sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libgo-perl 0.15-10 (amd64) Sun, 15 Sep 2024 18:57:33 +0000 | +==============================================================================+ Package: libgo-perl Version: 0.15-10 Source Version: 0.15-10 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-965d6245-ea3e-41fe-afb4-0fb0acf163f0' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libgo-perl_0.15-10 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libgo-perl_0.15-10 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libgo-perl-SS3MWs/resolver-RCgYXl' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libgo-perl_0.15-10.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libgo-perl-SS3MWs/libgo-perl-0.15' with '<>' I: NOTICE: Log filtering will replace 'build/libgo-perl-SS3MWs' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [760 B] Get:5 copy:/<>/apt_archive ./ Packages [772 B] Fetched 2141 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libclone-perl libdata-stag-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-checker-perl libxml-dom-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-perl libxml-writer-perl libxml2 libxslt1.1 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename sensible-utils ucf xsltproc Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libmldbm-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libclone-perl libdata-stag-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-checker-perl libxml-dom-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-perl libxml-writer-perl libxml2 libxslt1.1 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename sbuild-build-depends-main-dummy sensible-utils ucf xsltproc 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB/27.5 MB of archives. After this operation, 97.1 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.47-1+b1 [13.8 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:3 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get:4 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-1 [1381 kB] Get:9 file:/srv/reprepro perl-5.40/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-4+b1 [314 kB] Get:10 file:/srv/reprepro perl-5.40/main amd64 libxml-libxslt-perl amd64 2.003000-1+b1 [47.8 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] 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libelf1t64 amd64 0.191-2 [188 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.29-1 [103 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:60 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libxml-regexp-perl all 0.04-1.1 [7500 B] Get:68 http://deb.debian.org/debian unstable/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libxml-checker-perl all 0.13-7 [40.6 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1 [232 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 rename all 2.02-1 [21.8 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 xsltproc amd64 1.1.35-1.1 [114 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.5 MB in 0s (90.2 MB/s) Selecting previously unselected package netbase. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-1_amd64.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Preparing to unpack .../54-libnet-ssleay-perl_1.94-1+b2_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-1+b2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../55-libio-socket-ssl-perl_2.089-1_all.deb ... Unpacking libio-socket-ssl-perl (2.089-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../56-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../57-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../58-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../59-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../60-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../61-libxml-parser-perl_2.47-1+b3_amd64.deb ... Unpacking libxml-parser-perl (2.47-1+b3) ... Selecting previously unselected package libxml-perl. Preparing to unpack .../62-libxml-perl_0.08-4_all.deb ... Unpacking libxml-perl (0.08-4) ... Selecting previously unselected package libxml-regexp-perl. Preparing to unpack .../63-libxml-regexp-perl_0.04-1.1_all.deb ... Unpacking libxml-regexp-perl (0.04-1.1) ... Selecting previously unselected package libxml-dom-perl. Preparing to unpack .../64-libxml-dom-perl_1.46-2_all.deb ... Unpacking libxml-dom-perl (1.46-2) ... Selecting previously unselected package libxml-checker-perl. Preparing to unpack .../65-libxml-checker-perl_0.13-7_all.deb ... Unpacking libxml-checker-perl (0.13-7) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../66-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../67-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../68-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../69-libxml-libxml-perl_2.0207+dfsg+really+2.0134-4+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-4+b1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../70-libxslt1.1_1.1.35-1.1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.1) ... Selecting previously unselected package libxml-libxslt-perl:amd64. Preparing to unpack .../71-libxml-libxslt-perl_2.003000-1+b1_amd64.deb ... Unpacking libxml-libxslt-perl:amd64 (2.003000-1+b1) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../72-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package rename. Preparing to unpack .../73-rename_2.02-1_all.deb ... Unpacking rename (2.02-1) ... Selecting previously unselected package xsltproc. Preparing to unpack .../74-xsltproc_1.1.35-1.1_amd64.deb ... Unpacking xsltproc (1.1.35-1.1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../75-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libxml-regexp-perl (0.04-1.1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up rename (2.02-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.29-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libxslt1.1:amd64 (1.1.35-1.1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up xsltproc (1.1.35-1.1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-4+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up libxml-libxslt-perl:amd64 (2.003000-1+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-checker-perl (0.13-7) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libbio-perl-perl_1.7.8-1 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libclone-perl_0.47-1+b1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libexpat1_2.6.3-1 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 liburi-perl_5.29-1 libuuid1_2.40.2-8 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-checker-perl_0.13-7 libxml-dom-perl_1.46-2 libxml-libxml-perl_2.0207+dfsg+really+2.0134-4+b1 libxml-libxslt-perl_2.003000-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-parser-perl_2.47-1+b3 libxml-perl_0.08-4 libxml-regexp-perl_0.04-1.1 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg-3+b1 libxslt1.1_1.1.35-1.1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rename_2.02-1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.2-8 xsltproc_1.1.35-1.1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgo-perl Binary: libgo-perl Architecture: all Version: 0.15-10 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://geneontology.sourceforge.net/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libgo-perl Vcs-Git: https://salsa.debian.org/med-team/libgo-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename Package-List: libgo-perl deb perl optional arch=all Checksums-Sha1: 33ba8273c06a300c0deae61db852591920f29201 808993 libgo-perl_0.15.orig.tar.gz 6d510867e1f3b50aab3495710c3212c5469f22af 8476 libgo-perl_0.15-10.debian.tar.xz Checksums-Sha256: 423d26155ee85ca51ab2270cee59f4e85b193e57ac3a29aff827298c0a396b12 808993 libgo-perl_0.15.orig.tar.gz c49402ebbe8c2c76fc24a2921fb737af511be832cb700255e710523fec7b0a6f 8476 libgo-perl_0.15-10.debian.tar.xz Files: f4fb4f051821a836047e528303db585d 808993 libgo-perl_0.15.orig.tar.gz 9744fdd64086b2a52eee5c854450b554 8476 libgo-perl_0.15-10.debian.tar.xz Dgit: 700ac887dee8352752338ea54679626b6554a4e4 debian archive/debian/0.15-10 https://git.dgit.debian.org/libgo-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWAKREUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdptDhAAn/K6hKrc8ka5VJYHPubwnVxENCyD WEkaWNmu/SaKeH2xvI68ajDq8OdHRhWOjhByOVLvvx3CvCI80dnb00P34/2JXUNn 9Mh+hwXJs+H3jxZjyOENT77OSYM8fYLFanvr0cxRM4FyZ6ivhoc8f7Z2MG6xzUaE PDjjZnuZeluy48NniGElTkxX8Zqkrytk3JL4lIsXkKA28Q1JfIG+SLE4hR8vOvLF K7lnWFVWjUF98iMvevY5BzDd3fdzhSgT7wnaZFAgS3wixy+JdE+rc4aS/MwBJbre qZlnJTNmm2DPkpCzL/pT8HuxW0tM9xaj2sOvXk61Tvga+d0Zjx67R6aPamhzLAL4 e+QG+FU7BEw88GqkIMFNHUHLdEL4squNOxyjbe4teOwZlzM0fRW0lzDzBNGQ1jFc eKF6Mx/P5HUUufqwYiDtDEm/b8Dffnz0bHqv1A2x1h9Mk0Ab8dAVZ+wzGI7XueY7 9ixhC8bWEWY7I5069CpIIE/sQCFEEx5DushjN8NafqVjvGiml2b9v+Qv8ljygypd qOZ7f7jSokYHwHcsDNbCeOfUPRXBSmoC+L1iigwzUUDUQeB7jAexafmsDAh5U1xZ LP7/mbLn6GmKgqIS8KI3THedkZmfkv/WrESUG75XnYhXjNkkpxyg6cdZH5T7WduN v/jrjYXHhoRoHhA= =6iS3 -----END PGP SIGNATURE----- gpgv: Signature made Mon Dec 18 11:12:17 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgo-perl_0.15-10.dsc: no acceptable signature found dpkg-source: info: extracting libgo-perl in /<> dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libgo-perl_0.15-10 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libgo-perl_0.15-10 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-965d6245-ea3e-41fe-afb4-0fb0acf163f0 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libgo-perl using existing ./libgo-perl_0.15.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libgo-perl in libgo-perl_0.15-10.debian.tar.xz dpkg-source: info: building libgo-perl in libgo-perl_0.15-10.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp go-perl.pod blib/lib/go-perl.pod cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp scripts/go-apply-xslt blib/script/go-apply-xslt cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:49 2024 # Current time GMT: Sun Sep 15 18:57:49 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:49 2024 # Current time GMT: Sun Sep 15 18:57:49 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:49 2024 # Current time GMT: Sun Sep 15 18:57:49 2024 # Using Test.pm version 1.31 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:49 2024 # Current time GMT: Sun Sep 15 18:57:49 2024 # Using Test.pm version 1.31 ok 1 ok 2 ROOT: cellular_component ROOT: molecular_function ROOT: biological_process ok 3 ok 4 EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0000142|GO:0030480|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0007610|GO:0008150|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:49 2024 # Current time GMT: Sun Sep 15 18:57:49 2024 # Using Test.pm version 1.31 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: Part of ROOT: root ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a EDGE|GO:0008150|root|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:ai EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root ROOT: Part of TERMS: 29 SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a SYNS:fake synonym|FAKE:0001|class I PI3K EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 EDGE|GO:0008150|root|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0035095|GO:0035094|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042595|GO:0042594|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of TERMS: 29 DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:ai EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0048148|GO:0042220|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:50 2024 # Current time GMT: Sun Sep 15 18:57:50 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:51 2024 # Current time GMT: Sun Sep 15 18:57:51 2024 # Using Test.pm version 1.31 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.040000 for linux # Current time local: Sun Sep 15 18:57:52 2024 # Current time GMT: Sun Sep 15 18:57:52 2024 # Using Test.pm version 1.31 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 3 wallclock secs ( 0.08 usr 0.03 sys + 2.12 cusr 0.21 csys = 2.44 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgo-perl/ make -j2 install DESTDIR=/<>/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /<>/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /<>/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /<>/debian/libgo-perl/usr/bin/go2summary Installing /<>/debian/libgo-perl/usr/bin/go2obo_text Installing /<>/debian/libgo-perl/usr/bin/go2godb_prestore Installing /<>/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /<>/debian/libgo-perl/usr/bin/go2obo Installing /<>/debian/libgo-perl/usr/bin/go-apply-xslt Installing /<>/debian/libgo-perl/usr/bin/go-dag-summary.pl Installing /<>/debian/libgo-perl/usr/bin/go2sxpr Installing /<>/debian/libgo-perl/usr/bin/go2obo_html Installing /<>/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /<>/debian/libgo-perl/usr/bin/go2rdfxml Installing /<>/debian/libgo-perl/usr/bin/go2prolog Installing /<>/debian/libgo-perl/usr/bin/go2xml Installing /<>/debian/libgo-perl/usr/bin/go2fmt.pl Installing /<>/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /<>/debian/libgo-perl/usr/bin/go2owl Installing /<>/debian/libgo-perl/usr/bin/go2rdf Installing /<>/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /<>/debian/libgo-perl/usr/bin/go2obo_xml Installing /<>/debian/libgo-perl/usr/bin/go2chadoxml Installing /<>/debian/libgo-perl/usr/bin/map2slim Installing /<>/debian/libgo-perl/usr/bin/go2error_report Installing /<>/debian/libgo-perl/usr/bin/go2pathlist Installing /<>/debian/libgo-perl/usr/bin/go2tbl Installing /<>/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /<>/debian/libgo-perl/usr/bin/go2text_html make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install prename 's/\.pl//' /<>/debian/libgo-perl/usr/bin/* prename 's/\.pl//' /<>/debian/libgo-perl/usr/share/man/man1/*.pl* make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgo-perl' in '../libgo-perl_0.15-10_all.deb'. dpkg-genbuildinfo -O../libgo-perl_0.15-10_amd64.buildinfo dpkg-genchanges -O../libgo-perl_0.15-10_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T18:57:55Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libgo-perl_0.15-10_amd64.changes: --------------------------------- Format: 1.8 Date: Mon, 18 Dec 2023 12:00:35 +0100 Source: libgo-perl Binary: libgo-perl Architecture: source all Version: 0.15-10 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libgo-perl - perl modules for GO and other OBO ontologies Closes: 1046227 Changes: libgo-perl (0.15-10) unstable; urgency=medium . * Team upload. * d/clean: new: cleanup test artifacts. (Closes: #1046227) * d/control: declare compliance to standards version 4.6.2. 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da8cabf54ed7f35e75852ebc4f6c0724 6440 perl optional libgo-perl_0.15-10_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libgo-perl Binary: libgo-perl Architecture: all source Version: 0.15-10 Checksums-Md5: a06886d42446a3bb55ecbeab29500fc6 1257 libgo-perl_0.15-10.dsc 76cadaf781f60b6e25e8683d90632235 251004 libgo-perl_0.15-10_all.deb Checksums-Sha1: e58bef5500156fddd5633daee4c47d73a0298c17 1257 libgo-perl_0.15-10.dsc b18a4e4152fb6a3c56ed1b2909527058c5bbe554 251004 libgo-perl_0.15-10_all.deb Checksums-Sha256: 5bd569baa635934b7f85c6ef6be7f35ef3971a8e4e292efd740580efb39ccdaf 1257 libgo-perl_0.15-10.dsc 8f2d8be19a68de797f4ed98a1c41bf275341d25620387a5828cc852f48187121 251004 libgo-perl_0.15-10_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 18:57:54 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-4), libclone-perl (= 0.47-1+b1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libexpat1 (= 2.6.3-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgcrypt20 (= 1.11.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgpg-error0 (= 1.50-3), libgprofng0 (= 2.43.1-4), libhtml-parser-perl (= 3.83-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.089-1), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-4), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsystemd0 (= 256.6-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.32-1), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), liburi-perl (= 5.29-1), libuuid1 (= 2.40.2-8), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-checker-perl (= 0.13-7), libxml-dom-perl (= 1.46-2), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-4+b1), libxml-libxslt-perl (= 2.003000-1+b1), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b3), libxml-perl (= 0.08-4), libxml-regexp-perl (= 0.04-1.1), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg-3+b1), libxslt1.1 (= 1.1.35-1.1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.2-1), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rename (= 2.02-1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.2-8), xsltproc (= 1.1.35-1.1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1702897235" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libgo-perl_0.15-10_all.deb -------------------------- new Debian package, version 2.0. size 251004 bytes: control archive=6084 bytes. 874 bytes, 17 lines control 15966 bytes, 214 lines md5sums Package: libgo-perl Version: 0.15-10 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 945 Depends: perl:any, libdata-stag-perl, libgraphviz-perl, libyaml-perl Recommends: libxml-libxml-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc Suggests: bioperl Section: perl Priority: optional Homepage: http://geneontology.sourceforge.net/ Description: perl modules for GO and other OBO ontologies This is a collection of perl code for dealing with Gene Ontologies (GO) and Open Biomedical Ontologies (OBO) style ontologies. It is part of the ‘go-dev’ distribution, but this Debian package is made from the CPAN archive. This package contains both scripts (which can be used with no knowledge of perl), and libraries which will be of use to perl programmers using GO or OBO. drwxr-xr-x root/root 0 2023-12-18 11:00 ./ drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/ drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/bin/ -rwxr-xr-x root/root 2679 2023-12-18 11:00 ./usr/bin/go-apply-xslt -rwxr-xr-x root/root 3933 2023-12-18 11:00 ./usr/bin/go-dag-summary -rwxr-xr-x root/root 2086 2023-12-18 11:00 ./usr/bin/go-export-graph -rwxr-xr-x root/root 916 2023-12-18 11:00 ./usr/bin/go-export-prolog -rwxr-xr-x root/root 4590 2023-12-18 11:00 ./usr/bin/go-filter-subset -rwxr-xr-x root/root 2379 2023-12-18 11:00 ./usr/bin/go-show-assocs-by-node -rwxr-xr-x root/root 2961 2023-12-18 11:00 ./usr/bin/go-show-paths-to-root -rwxr-xr-x root/root 111 2023-12-18 11:00 ./usr/bin/go2chadoxml -rwxr-xr-x root/root 728 2023-12-18 11:00 ./usr/bin/go2error_report -rwxr-xr-x root/root 6263 2023-12-18 11:00 ./usr/bin/go2fmt -rwxr-xr-x root/root 72 2023-12-18 11:00 ./usr/bin/go2godb_prestore -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2obo -rwxr-xr-x root/root 35 2023-12-18 11:00 ./usr/bin/go2obo_html -rwxr-xr-x root/root 35 2023-12-18 11:00 ./usr/bin/go2obo_text -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2obo_xml -rwxr-xr-x root/root 62 2023-12-18 11:00 ./usr/bin/go2owl -rwxr-xr-x root/root 35 2023-12-18 11:00 ./usr/bin/go2pathlist -rwxr-xr-x root/root 33 2023-12-18 11:00 ./usr/bin/go2prolog -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2rdf -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2rdfxml -rwxr-xr-x root/root 34 2023-12-18 11:00 ./usr/bin/go2summary -rwxr-xr-x root/root 31 2023-12-18 11:00 ./usr/bin/go2sxpr -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2tbl -rwxr-xr-x root/root 36 2023-12-18 11:00 ./usr/bin/go2text_html -rwxr-xr-x root/root 30 2023-12-18 11:00 ./usr/bin/go2xml -rwxr-xr-x root/root 21177 2023-12-18 11:00 ./usr/bin/map2slim drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/ drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/doc/libgo-perl/ -rw-r--r-- root/root 277 2023-12-18 11:00 ./usr/share/doc/libgo-perl/README.test -rw-r--r-- root/root 597 2023-12-18 11:00 ./usr/share/doc/libgo-perl/changelog.Debian.gz -rw-r--r-- root/root 2275 2011-08-01 22:10 ./usr/share/doc/libgo-perl/changelog.gz -rw-r--r-- root/root 1011 2023-12-18 11:00 ./usr/share/doc/libgo-perl/copyright drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/man/man1/ -rw-r--r-- root/root 984 2023-12-18 11:00 ./usr/share/man/man1/go-apply-xslt.1p.gz -rw-r--r-- root/root 1643 2023-12-18 11:00 ./usr/share/man/man1/go-dag-summary.1p.gz -rw-r--r-- root/root 1484 2023-12-18 11:00 ./usr/share/man/man1/go-export-graph.1p.gz -rw-r--r-- root/root 897 2023-12-18 11:00 ./usr/share/man/man1/go-export-prolog.1p.gz -rw-r--r-- root/root 2003 2023-12-18 11:00 ./usr/share/man/man1/go-filter-subset.1p.gz -rw-r--r-- root/root 1226 2023-12-18 11:00 ./usr/share/man/man1/go-show-assocs-by-node.1p.gz -rw-r--r-- root/root 1611 2023-12-18 11:00 ./usr/share/man/man1/go-show-paths-to-root.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2chadoxml.1p.gz -> go2fmt.1p.gz -rw-r--r-- root/root 924 2023-12-18 11:00 ./usr/share/man/man1/go2error_report.1p.gz -rw-r--r-- root/root 2637 2023-12-18 11:00 ./usr/share/man/man1/go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2godb_prestore.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2obo.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2obo_html.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2obo_text.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2obo_xml.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2owl.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2pathlist.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2prolog.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2rdf.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2rdfxml.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2summary.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2sxpr.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2tbl.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2text_html.1p.gz -> go2fmt.1p.gz lrwxrwxrwx root/root 0 2023-12-18 11:00 ./usr/share/man/man1/go2xml.1p.gz -> go2fmt.1p.gz -rw-r--r-- root/root 4591 2023-12-18 11:00 ./usr/share/man/man1/map2slim.1p.gz drwxr-xr-x root/root 0 2023-12-18 11:00 ./usr/share/man/man3/ -rw-r--r-- root/root 997 2023-12-18 11:00 ./usr/share/man/man3/GO::Basic.3pm.gz -rw-r--r-- root/root 1157 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::base.3pm.gz -rw-r--r-- root/root 919 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::go_def.3pm.gz -rw-r--r-- root/root 919 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::go_ont.3pm.gz -rw-r--r-- root/root 920 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::go_xref.3pm.gz -rw-r--r-- root/root 1129 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::godb_prestore.3pm.gz -rw-r--r-- root/root 1224 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::obj.3pm.gz -rw-r--r-- root/root 995 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm.gz -rw-r--r-- root/root 927 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::obo_html.3pm.gz -rw-r--r-- root/root 985 2023-12-18 11:00 ./usr/share/man/man3/GO::Handlers::obo_text.3pm.gz -rw-r--r-- root/root 1077 2023-12-18 11:00 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