sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-variation-perl 1.7.5-3 (amd64) Tue, 06 Aug 2024 13:06:01 +0000 | +==============================================================================+ Package: libbio-variation-perl Version: 1.7.5-3 Source Version: 1.7.5-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-6ea20dda-7566-4ac2-af4d-03bdce20a032' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-variation-perl_1.7.5-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-variation-perl_1.7.5-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-FkPICH/resolver-3GHKAI' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Ign:3 http://localhost:3142/debian sid InRelease Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-variation-perl_1.7.5-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-FkPICH/libbio-variation-perl-1.7.5' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-variation-perl-FkPICH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [758 B] Get:5 copy:/<>/apt_archive ./ Packages [770 B] Fetched 2137 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-db-embl-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-db-embl-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB/26.6 MB of archives. After this operation, 94.9 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:3 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.1-2 [1380 kB] Get:7 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:8 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [198 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-4 [96.6 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:30 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:57 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libbio-db-embl-perl all 1.7.4-4 [7820 B] Get:64 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:66 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.9 MB in 0s (151 MB/s) Selecting previously unselected package netbase. (Reading database ... 22925 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.1-2_amd64.deb ... Unpacking openssl (3.3.1-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Unpacking libhtml-parser-perl:amd64 (3.83-1+b1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../49-libhtml-tree-perl_5.07-3_all.deb ... Unpacking libhtml-tree-perl (5.07-3) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../50-libhttp-cookies-perl_6.11-1_all.deb ... Unpacking libhttp-cookies-perl (6.11-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../51-libhttp-negotiate-perl_6.01-2_all.deb ... Unpacking libhttp-negotiate-perl (6.01-2) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../52-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../53-libnet-ssleay-perl_1.94-1+b2_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-1+b2) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../54-libio-socket-ssl-perl_2.088-1_all.deb ... Unpacking libio-socket-ssl-perl (2.088-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../55-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../56-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../57-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../58-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../59-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package libbio-db-embl-perl. Preparing to unpack .../60-libbio-db-embl-perl_1.7.4-4_all.deb ... Unpacking libbio-db-embl-perl (1.7.4-4) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../61-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../62-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../63-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../64-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../65-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../66-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../67-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../68-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../69-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../70-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../71-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../72-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../73-libxml-parser-perl_2.47-1+b3_amd64.deb ... Unpacking libxml-parser-perl (2.47-1+b3) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../74-libxml-twig-perl_1%3a3.52-3_all.deb ... Unpacking libxml-twig-perl (1:3.52-3) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../75-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../76-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-4) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libbio-db-embl-perl (1.7.4-4) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43-1 dpkg-dev_1.22.11 g++-13_13.3.0-5 g++-14_14.2.0-1 gcc-13_13.3.0-5 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-5 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.10.3-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.43-1 binutils-common_2.43-1 binutils-x86-64-linux-gnu_2.43-1 bsdextrautils_2.40.2-4 bsdutils_1:2.40.2-4 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-5 cpp-13-x86-64-linux-gnu_13.3.0-5 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-5 g++-13-x86-64-linux-gnu_13.3.0-5 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-5 gcc-13-base_13.3.0-5 gcc-13-x86-64-linux-gnu_13.3.0-5 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.43-1 libbio-db-embl-perl_1.7.4-4 libbio-perl-perl_1.7.8-1 libblkid1_2.40.2-4 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.2.0-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.43-1 libctf0_2.43-1 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.2-1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-5 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.43-1 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.088-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-4 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.43-1 libsmartcols1_2.40.2-4 libsqlite3-0_3.46.0-1 libssl3t64_3.3.1-2 libstdc++-13-dev_13.3.0-5 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.2-4 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-parser-perl_2.47-1+b3 libxml-twig-perl_1:3.52-3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.3-1 locales-all_2.39-6 login_1:4.16.0-2+really2.40.2-4 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.1-2 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-4 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all Version: 1.7.5-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Variation Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-variation-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-variation-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libtest-most-perl, libbio-db-embl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Package-List: libbio-variation-perl deb perl optional arch=all Checksums-Sha1: 72fd802799ca83cf4a900710f09cd252dc59f665 60430 libbio-variation-perl_1.7.5.orig.tar.gz 2d464a4a7d9a574f378a46d7a2edf31ae5e65762 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz Checksums-Sha256: 4bffdd060b5e793919f700e46056eb3f0195ed4df2e60ad68b383c31e51f824f 60430 libbio-variation-perl_1.7.5.orig.tar.gz 2ca70dc29abd5b8e4ee7659247d5d415c62d645cde7046ae5075b2b392b92546 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz Files: 8495ecbaf4392ecd6d1d56127b4111a3 60430 libbio-variation-perl_1.7.5.orig.tar.gz 6b2aecb2d4e44634e1852c8f2c444b65 2176 libbio-variation-perl_1.7.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGouOARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFW4BAAhMsOR9mZFTevkF8cd6SwVZafLY5sAh1w 1fX+5zahLOHFSBQP4kSeUyzVEifiMrc8CVjIVn3b1XVt/xL/H+fHU4U8F0f6MUEv paV1L6zOdzwKoxV33+C4dV82OjRIIohUqjBWA2k1FSK3qHdXs941ypCVWiLED3U4 AwYPFBJvVmnyCn1Jkcl2US/jol3XoBrZxlGHeS3ut/Z7GGSnwK9YIOuQ9xCHfsuM 8TPw1PbeTOtIr6mQaoQ7hXuX+s9OsbPuOcDeFE4j9fFPfkR8VjwfmkGqDb0sCrPR S3xGr+ZgvS/CGn1wB4Pq5JkKek7sZv+4P+fUOeqIu8lgs7JzjtbZmdiiwZ/kG5z0 qY7ufPr71aYJXwcVvLFarPaneoGav31YMMJ9BjiwakaR3Kf23GMcKWLNOCVj8Yei fAmZFMp/eHr1X+q8s9cM3oEpxNat2P9INAl0L6K3WMVRFKytNXaiHZVacijomYRE HQF0PIz8lMJg0a55Wb+vDvuvWMK/B4QEFy7dILZZJBZQFET9yt54wY/TKIdylqqR LK/A4brjGzjp2B8oZwCCVLt7PgQhjeQhTBkVXu65pP9dVKKUFxgb7ekjOSi3J5Uv ebL0Mez3gNRMUPRR65Atlb6UuhmIzy//QWmN11BVYkJuYKYOIeKsIpdxCzTQnTdn 9743FMqj090= =fJ8O -----END PGP SIGNATURE----- gpgv: Signature made Thu Dec 2 12:15:28 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-variation-perl_1.7.5-3.dsc: no acceptable signature found dpkg-source: info: extracting libbio-variation-perl in /<> dpkg-source: info: unpacking libbio-variation-perl_1.7.5.orig.tar.gz dpkg-source: info: unpacking libbio-variation-perl_1.7.5-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-variation-perl_1.7.5-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-variation-perl_1.7.5-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-6ea20dda-7566-4ac2-af4d-03bdce20a032 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-variation-perl dpkg-buildpackage: info: source version 1.7.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-variation-perl using existing ./libbio-variation-perl_1.7.5.orig.tar.gz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5-3.debian.tar.xz dpkg-source: info: building libbio-variation-perl in libbio-variation-perl_1.7.5-3.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Variation Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Variation/RNAChange.pm blib/lib/Bio/Variation/RNAChange.pm cp lib/Bio/Variation.pm blib/lib/Bio/Variation.pm cp lib/Bio/Variation/VariantI.pm blib/lib/Bio/Variation/VariantI.pm cp lib/Bio/Variation/IO.pm blib/lib/Bio/Variation/IO.pm cp lib/Bio/Variation/SNP.pm blib/lib/Bio/Variation/SNP.pm cp lib/Bio/Variation/IO/flat.pm blib/lib/Bio/Variation/IO/flat.pm cp lib/Bio/Variation/Allele.pm blib/lib/Bio/Variation/Allele.pm cp lib/Bio/Variation/DNAMutation.pm blib/lib/Bio/Variation/DNAMutation.pm cp lib/Bio/Variation/IO/xml.pm blib/lib/Bio/Variation/IO/xml.pm cp lib/Bio/Variation/AAReverseMutate.pm blib/lib/Bio/Variation/AAReverseMutate.pm cp lib/Bio/Variation/AAChange.pm blib/lib/Bio/Variation/AAChange.pm cp lib/Bio/Variation/SeqDiff.pm blib/lib/Bio/Variation/SeqDiff.pm cp bin/bp_flanks blib/script/bp_flanks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_flanks Manifying 1 pod document Manifying 12 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..13 ok 1 - Bio/Variation.pm loaded ok ok 2 - Bio/Variation/AAChange.pm loaded ok ok 3 - Bio/Variation/AAReverseMutate.pm loaded ok ok 4 - Bio/Variation/Allele.pm loaded ok ok 5 - Bio/Variation/DNAMutation.pm loaded ok ok 6 - Bio/Variation/IO.pm loaded ok ok 7 - Bio/Variation/IO/flat.pm loaded ok ok 8 - Bio/Variation/IO/xml.pm loaded ok ok 9 - Bio/Variation/RNAChange.pm loaded ok ok 10 - Bio/Variation/SNP.pm loaded ok ok 11 - Bio/Variation/SeqDiff.pm loaded ok ok 12 - Bio/Variation/VariantI.pm loaded ok ok 13 - bin/bp_flanks compiled ok ok t/AAChange.t ............. 1..27 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::AAChange; ok 3 - use Bio::Variation::RNAChange; ok 4 ok 5 - An object of class 'Bio::Variation::AAChange' isa 'Bio::Variation::AAChange' ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 - Trivial name is [V3A] ok 27 ok t/AAReverseMutate.t ...... 1..16 ok 1 - use Bio::Variation::AAReverseMutate; ok 2 ok 3 - An object of class 'Bio::Variation::AAReverseMutate' isa 'Bio::Variation::AAReverseMutate' ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 - An object of class 'Bio::Variation::RNAChange' isa 'Bio::Variation::RNAChange' ok 11 ok 12 ok 13 ok 14 - Codon_ori is |ttc| ok 15 ok 16 ok t/Allele.t ............... 1..14 ok 1 - use Bio::Variation::Allele; ok 2 - An object of class 'Bio::Variation::Allele' isa 'Bio::Variation::Allele' ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/DNAMutation.t .......... 1..37 ok 1 - use Bio::Variation::DNAMutation; ok 2 - use Bio::Variation::Allele; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok t/RNAChange.t ............ 1..31 ok 1 - use Bio::Variation::Allele; ok 2 - use Bio::Variation::RNAChange; ok 3 - use Bio::Variation::AAChange; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 - label ismissense ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 - Codon_ori is |gaa| ok 26 - Codon_mut is |aaa| ok 27 ok 28 ok 29 ok 30 ok 31 ok t/SeqDiff.t .............. 1..44 ok 1 - use Bio::Variation::SeqDiff; ok 2 - use Bio::Variation::DNAMutation; ok 3 - use Bio::Variation::Allele; ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 34 - An object of class 'Bio::Variation::DNAMutation' isa 'Bio::Variation::VariantI' ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeq' ok 43 ok 44 ok t/SNP.t .................. 1..13 ok 1 - use Bio::Variation::SNP; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok t/Variation_IO.t ......... 1..26 ok 1 - use Bio::Variation::IO; ok 2 ok 3 ok 4 ok 5 ok 6 - test output file compared to input ok 7 ok 8 ok 9 ok 10 ok 11 - test output file compared to input ok 12 ok 13 ok 14 ok 15 ok 16 - test output file compared to input ok 17 ok 18 ok 19 ok 20 ok 21 - test output file compared to input ok 22 ok 23 ok 24 ok 25 ok 26 - test output file compared to input ok All tests successful. Files=12, Tests=221, 2 wallclock secs ( 0.04 usr 0.02 sys + 1.90 cusr 0.42 csys = 2.38 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-variation-perl/ make -j2 install DESTDIR=/<>/debian/libbio-variation-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Manifying 12 pod documents Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAReverseMutate.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SeqDiff.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/RNAChange.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/AAChange.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/Allele.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/SNP.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/DNAMutation.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/VariantI.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/xml.pm Installing /<>/debian/libbio-variation-perl/usr/share/perl5/Bio/Variation/IO/flat.pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man1/bp_flanks.1p Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::xml.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SeqDiff.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::Allele.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::RNAChange.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::VariantI.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::IO::flat.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::DNAMutation.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::AAChange.3pm Installing /<>/debian/libbio-variation-perl/usr/share/man/man3/Bio::Variation::SNP.3pm Installing /<>/debian/libbio-variation-perl/usr/bin/bp_flanks make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-variation-perl' in '../libbio-variation-perl_1.7.5-3_all.deb'. dpkg-genbuildinfo -O../libbio-variation-perl_1.7.5-3_amd64.buildinfo dpkg-genchanges -O../libbio-variation-perl_1.7.5-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-06T13:06:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-variation-perl_1.7.5-3_amd64.changes: -------------------------------------------- Format: 1.8 Date: Thu, 02 Dec 2021 13:10:30 +0100 Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: source all Version: 1.7.5-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-variation-perl - BioPerl variation-related functionality Closes: 963866 Changes: libbio-variation-perl (1.7.5-3) unstable; urgency=medium . * Team upload. * Upstream has brocken dependency circle so drop dependency from libbio-db-ncbihelper-perl here as well Closes: #963866 * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Repository. * watch file standard 4 (routine-update) Checksums-Sha1: 3783355a8e387ee4c941529d2640570ac7b4ec15 1351 libbio-variation-perl_1.7.5-3.dsc 8ed2b0f25977047ea9240293f3c94e0359ac291e 2184 libbio-variation-perl_1.7.5-3.debian.tar.xz 0af3e02f2335fce2a92f9f53a051cc0d0ec32f09 69316 libbio-variation-perl_1.7.5-3_all.deb e47fedfc6e28c248872d0aaecb4cc208dd2f6ae4 6524 libbio-variation-perl_1.7.5-3_amd64.buildinfo Checksums-Sha256: 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Format: 1.0 Source: libbio-variation-perl Binary: libbio-variation-perl Architecture: all source Version: 1.7.5-3 Checksums-Md5: 8aa7d1220bc5b4927d759c485da4675a 1351 libbio-variation-perl_1.7.5-3.dsc 511d9e13ffd5cd534c2105b99da31ca5 69316 libbio-variation-perl_1.7.5-3_all.deb Checksums-Sha1: 3783355a8e387ee4c941529d2640570ac7b4ec15 1351 libbio-variation-perl_1.7.5-3.dsc 0af3e02f2335fce2a92f9f53a051cc0d0ec32f09 69316 libbio-variation-perl_1.7.5-3_all.deb Checksums-Sha256: 7f29fd234d282afb8b464fff1dfd5f53c3e675cc9704bbf05792fdcb20bbb69b 1351 libbio-variation-perl_1.7.5-3.dsc 75b6519a1e87628f3710b2331acbc9831010a18cc00100c5583e52bf706f523e 69316 libbio-variation-perl_1.7.5-3_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 06 Aug 2024 13:06:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.43-1), binutils-common (= 2.43-1), binutils-x86-64-linux-gnu (= 2.43-1), bsdextrautils (= 2.40.2-4), bsdutils (= 1:2.40.2-4), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-5), cpp-13-x86-64-linux-gnu (= 13.3.0-5), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-5), gcc-13-base (= 13.3.0-5), gcc-13-x86-64-linux-gnu (= 13.3.0-5), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.43-1), libbio-db-embl-perl (= 1.7.4-4), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.2-4), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.2.0-1), libclass-data-inheritable-perl (= 0.08-3), libclone-perl (= 0.46-1+b3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.43-1), libctf0 (= 2.43-1), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-5), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.43-1), libhtml-parser-perl (= 3.83-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.088-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-4), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.43-1), libsmartcols1 (= 2.40.2-4), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256.4-2), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.2-4), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-parser-perl (= 2.47-1+b3), libxml-twig-perl (= 1:3.52-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.3-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.1-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-4), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1638447030" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-variation-perl_1.7.5-3_all.deb ------------------------------------- new Debian package, version 2.0. size 69316 bytes: control archive=1560 bytes. 921 bytes, 20 lines control 2277 bytes, 29 lines md5sums Package: libbio-variation-perl Version: 1.7.5-3 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 229 Depends: perl:any, libbio-perl-perl, libio-string-perl, libxml-twig-perl, libxml-writer-perl Breaks: libbio-perl-perl (<< 1.7.3) Replaces: libbio-perl-perl (<< 1.7.3) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-Variation Description: BioPerl variation-related functionality The code in this distribution focuses on simple low-dependency variant-related functionality for BioPerl. . Bio::Variation name space contains modules to store sequence variation information as differences between the reference sequence and changes sequences. Also included are classes to write out and recrete objects from EMBL-like flat files and XML. Lastly, there are simple classes to calculate values for sequence change objects. drwxr-xr-x root/root 0 2021-12-02 12:10 ./ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/bin/ -rwxr-xr-x root/root 9709 2021-12-02 12:10 ./usr/bin/bp_flanks drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/doc/libbio-variation-perl/ -rw-r--r-- root/root 520 2021-12-02 12:10 ./usr/share/doc/libbio-variation-perl/changelog.Debian.gz -rw-r--r-- root/root 326 2020-01-06 19:58 ./usr/share/doc/libbio-variation-perl/changelog.gz -rw-r--r-- root/root 1188 2021-12-02 12:10 ./usr/share/doc/libbio-variation-perl/copyright drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/man/ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/man/man1/ -rw-r--r-- root/root 2584 2021-12-02 12:10 ./usr/share/man/man1/bp_flanks.1p.gz drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/man/man3/ -rw-r--r-- root/root 1200 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation.3pm.gz -rw-r--r-- root/root 2602 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::AAChange.3pm.gz -rw-r--r-- root/root 2342 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::AAReverseMutate.3pm.gz -rw-r--r-- root/root 2308 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::Allele.3pm.gz -rw-r--r-- root/root 2517 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::DNAMutation.3pm.gz -rw-r--r-- root/root 3835 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::IO.3pm.gz -rw-r--r-- root/root 1747 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::IO::flat.3pm.gz -rw-r--r-- root/root 1923 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::IO::xml.3pm.gz -rw-r--r-- root/root 3173 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::RNAChange.3pm.gz -rw-r--r-- root/root 2115 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::SNP.3pm.gz -rw-r--r-- root/root 3976 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::SeqDiff.3pm.gz -rw-r--r-- root/root 4223 2021-12-02 12:10 ./usr/share/man/man3/Bio::Variation::VariantI.3pm.gz drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/perl5/ drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 1040 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation.pm drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/perl5/Bio/Variation/ -rw-r--r-- root/root 13893 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/AAChange.pm -rw-r--r-- root/root 7517 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/AAReverseMutate.pm -rw-r--r-- root/root 6642 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/Allele.pm -rw-r--r-- root/root 9955 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/DNAMutation.pm -rw-r--r-- root/root 9408 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/IO.pm drwxr-xr-x root/root 0 2021-12-02 12:10 ./usr/share/perl5/Bio/Variation/IO/ -rw-r--r-- root/root 21020 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/IO/flat.pm -rw-r--r-- root/root 14812 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/IO/xml.pm -rw-r--r-- root/root 16050 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/RNAChange.pm -rw-r--r-- root/root 4919 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/SNP.pm -rw-r--r-- root/root 25035 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/SeqDiff.pm -rw-r--r-- root/root 27318 2020-01-06 19:58 ./usr/share/perl5/Bio/Variation/VariantI.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1348 Build-Time: 6 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 9 Job: /srv/debomatic/incoming/libbio-variation-perl_1.7.5-3.dsc Machine Architecture: amd64 Package: libbio-variation-perl Package-Time: 23 Source-Version: 1.7.5-3 Space: 1348 Status: successful Version: 1.7.5-3 -------------------------------------------------------------------------------- Finished at 2024-08-06T13:06:24Z Build needed 00:00:23, 1348k disk space