sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +=========================================================================================+ | libbio-tools-run-alignment-tcoffee-perl 1.7.4-3 (amd64) Sun, 15 Sep 2024 14:40:24 +0000 | +=========================================================================================+ Package: libbio-tools-run-alignment-tcoffee-perl Version: 1.7.4-3 Source Version: 1.7.4-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-8aa6c8ed-00c9-4dbd-8a3f-f14219e23417' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-run-alignment-tcoffee-perl_1.7.4-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-run-alignment-tcoffee-perl_1.7.4-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-tcoffee-perl-qoXDB2/resolver-X7vfYK' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://localhost:3142/debian sid InRelease Hit:3 http://deb.debian.org/debian unstable InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-tcoffee-perl-qoXDB2/libbio-tools-run-alignment-tcoffee-perl-1.7.4' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-tcoffee-perl-qoXDB2' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libtest-exception-perl, perl, t-coffee Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libtest-exception-perl, perl, t-coffee dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [795 B] Get:5 copy:/<>/apt_archive ./ Packages [763 B] Fetched 2167 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfakeroot libfile-sort-perl libfile-stripnondeterminism-perl libicu72 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-exception-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils t-coffee Suggested packages: autoconf-archive gnu-standards autoconf-doc clustalx seaview dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl boxshade t-coffee-examples Recommended packages: curl | wget | lynx libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl libalgorithm-diff-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl amap-align clustalo dialign-tx fsa kalign mafft muscle mustang ncbi-blast+ poa prank probcons proda tm-align The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfakeroot libfile-sort-perl libfile-stripnondeterminism-perl libicu72 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-exception-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils t-coffee 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 24.9 MB/25.0 MB of archives. After this operation, 91.2 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libfile-sort-perl all 1.01-3 [21.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libbio-perl-run-perl all 1.7.3-11 [528 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libdevel-checkbin-perl all 0.04-3 [5228 B] Get:42 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 t-coffee amd64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [1032 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.9 MB in 0s (162 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_amd64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package clustalw. Preparing to unpack .../15-clustalw_2.1+lgpl-7_amd64.deb ... Unpacking clustalw (2.1+lgpl-7) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.191-2_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-5_amd64.deb ... Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../30-libfakeroot_1.36-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.36-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../31-fakeroot_1.36-1_amd64.deb ... Unpacking fakeroot (1.36-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../32-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../33-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../34-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../35-libio-pty-perl_1.20-1+b2_amd64.deb ... Unpacking libio-pty-perl (1:1.20-1+b2) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../36-libipc-run-perl_20231003.0-2_all.deb ... Unpacking libipc-run-perl (20231003.0-2) ... Selecting previously unselected package libfile-sort-perl. Preparing to unpack .../37-libfile-sort-perl_1.01-3_all.deb ... Unpacking libfile-sort-perl (1.01-3) ... Selecting previously unselected package libbio-perl-run-perl. Preparing to unpack .../38-libbio-perl-run-perl_1.7.3-11_all.deb ... Unpacking libbio-perl-run-perl (1.7.3-11) ... Selecting previously unselected package libdevel-checkbin-perl. Preparing to unpack .../39-libdevel-checkbin-perl_0.04-3_all.deb ... Unpacking libdevel-checkbin-perl (0.04-3) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../40-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../41-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package t-coffee. Preparing to unpack .../42-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_amd64.deb ... Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../43-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libdevel-checkbin-perl (0.04-3) ... Setting up libio-pty-perl (1:1.20-1+b2) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up clustalw (2.1+lgpl-7) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up libfile-sort-perl (1.01-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libbio-perl-run-perl (1.7.3-11) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 clustalw_2.1+lgpl-7 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libbio-perl-perl_1.7.8-1 libbio-perl-run-perl_1.7.3-11 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdevel-checkbin-perl_0.04-3 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-sort-perl_1.01-3 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-pty-perl_1:1.20-1+b2 libio-string-perl_1.08-4 libipc-run-perl_20231003.0-2 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsub-uplevel-perl_0.2800-3 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtest-exception-perl_0.43-3 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-run-alignment-tcoffee-perl Binary: libbio-tools-run-alignment-tcoffee-perl Architecture: all Version: 1.7.4-3 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-TCoffee Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-tcoffee-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-tcoffee-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: clustalw , libbio-perl-perl , libbio-perl-run-perl , libdevel-checkbin-perl, libtest-exception-perl , perl, t-coffee Package-List: libbio-tools-run-alignment-tcoffee-perl deb science optional arch=all Checksums-Sha1: dda94eb00899c2865e61c7feb6205971c317a26a 29373 libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz 9cfe1c2bfcc88a86fff487599a91d70fd296550f 2536 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz Checksums-Sha256: 3d8b41b9701933249cde26dd0e8a919958b218f1f585183a7a225e6a254d6523 29373 libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz 4935d6d288109914fd62dab352c8607fdb6f98c6d1d86051bcb3aee6a4fd391a 2536 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz Files: 49c2a232f3c64b8a4add2560f1c0322b 29373 libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz 9166dd5e7ea488e1517195b5b459cd14 2536 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmNJeyYACgkQV5wWDUye I+jWxxAAn5gP4C1VG50fdXjUx+a0nAUTUQEM6Vv5yKxmb1+bBM8j8d8gsxHt7I+x zLWEutCiBLRpK71vibCkt2uLqvmmhNj2pvpvmsjneuLfqZS3UDYIjWd0XzGCcu5V 7oqI25YWatKjqQrn3lW0rdutyo3MF4jYizYB4XbJB07Fx2rZ9FR6X1SnAYPfMeXu Zt6ID0SvI7vY5egSSyiuT4at3WZvcTlutGUZIVCJomnItqgXqImeNu5eY9WlYzuQ QBxCdWFaHfgbsZiFnGnD9gq6eYU67Fs6i2teloXrilbL1NjL2tX5sMrdwV0T7eOR kw9+LHUpGM3c+4BeQ+LmFQABcPFkHGf/mrFgXlsoVgerRmbcSxHQWewD4N7Xp+z8 CDbfCKjKXsUY1YbbeXx1WurBwUQdPF5ynytmJmbgYTc3VmmrtW3Yx3lTfgRpeHdU hvHzVtTyFHUM2tcSoVKLJM7SHgnU7mxakVXVButZIS3oFfsKJ6oF6XT1qEuCU61w bjH5nk37DSdNRKhVudfWkH+hmQARQQ6OgsbSzEltH4TN815A2GNVKRkXmhYYUqCb VlbhP8dglJPv9sywKH6sogsSFKA1wycA+cew77Kfk4DlTZjr85IDfC4O93LdKHJz oR0pfJjQmmSFaVW9DYLByf6MIy5vISXxrRx3cbmArtPGPFshvZ8= =0S/o -----END PGP SIGNATURE----- gpgv: Signature made Fri Oct 14 15:07:18 2022 UTC gpgv: using RSA key B23862C415D6565A4E86CBD7579C160D4C9E23E8 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc: no acceptable signature found dpkg-source: info: extracting libbio-tools-run-alignment-tcoffee-perl in /<> dpkg-source: info: unpacking libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-typos.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-run-alignment-tcoffee-perl_1.7.4-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-run-alignment-tcoffee-perl_1.7.4-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-8aa6c8ed-00c9-4dbd-8a3f-f14219e23417 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-tools-run-alignment-tcoffee-perl dpkg-buildpackage: info: source version 1.7.4-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jelmer Vernooij dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-tools-run-alignment-tcoffee-perl using existing ./libbio-tools-run-alignment-tcoffee-perl_1.7.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-tools-run-alignment-tcoffee-perl in libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz dpkg-source: info: building libbio-tools-run-alignment-tcoffee-perl in libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Locating bin:t_coffee... found at /usr/bin/t_coffee. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Tools::Run::Alignment::TCoffee Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Tools/Run/Alignment/TCoffee.pm blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm Manifying 1 pod document make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/Tools/Run/Alignment/TCoffee.pm loaded ok ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author ! [Final Evaluation][TOT= 396][ 0 %] ! [Final Evaluation][TOT= 396][ 1 %] ! [Final Evaluation][TOT= 396][ 2 %] ! [Final Evaluation][TOT= 396][ 3 %] ! [Final Evaluation][TOT= 396][ 4 %] ! [Final Evaluation][TOT= 396][ 5 %] ! [Final Evaluation][TOT= 396][ 6 %] ! [Final Evaluation][TOT= 396][ 7 %] ! [Final Evaluation][TOT= 396][ 8 %] ! [Final Evaluation][TOT= 396][ 9 %] ! [Final Evaluation][TOT= 396][ 10 %] ! [Final Evaluation][TOT= 396][ 11 %] ! [Final Evaluation][TOT= 396][ 12 %] ! [Final Evaluation][TOT= 396][ 13 %] ! [Final Evaluation][TOT= 396][ 14 %] ! [Final Evaluation][TOT= 396][ 15 %] ! [Final Evaluation][TOT= 396][ 16 %] ! [Final Evaluation][TOT= 396][ 17 %] ! [Final Evaluation][TOT= 396][ 18 %] ! [Final Evaluation][TOT= 396][ 19 %] ! [Final Evaluation][TOT= 396][ 20 %] ! [Final Evaluation][TOT= 396][ 21 %] ! [Final Evaluation][TOT= 396][ 22 %] ! [Final Evaluation][TOT= 396][ 23 %] ! [Final Evaluation][TOT= 396][ 24 %] ! [Final Evaluation][TOT= 396][ 25 %] ! [Final Evaluation][TOT= 396][ 26 %] ! [Final Evaluation][TOT= 396][ 27 %] ! [Final Evaluation][TOT= 396][ 28 %] ! [Final Evaluation][TOT= 396][ 29 %] ! [Final Evaluation][TOT= 396][ 30 %] ! [Final Evaluation][TOT= 396][ 31 %] ! [Final Evaluation][TOT= 396][ 32 %] ! [Final Evaluation][TOT= 396][ 33 %] ! [Final Evaluation][TOT= 396][ 34 %] ! [Final Evaluation][TOT= 396][ 35 %] ! [Final Evaluation][TOT= 396][ 36 %] ! [Final Evaluation][TOT= 396][ 37 %] ! [Final Evaluation][TOT= 396][ 38 %] ! [Final Evaluation][TOT= 396][ 39 %] ! [Final Evaluation][TOT= 396][ 40 %] ! [Final Evaluation][TOT= 396][ 41 %] ! [Final Evaluation][TOT= 396][ 42 %] ! [Final Evaluation][TOT= 396][ 43 %] ! [Final Evaluation][TOT= 396][ 44 %] ! [Final Evaluation][TOT= 396][ 45 %] ! [Final Evaluation][TOT= 396][ 46 %] ! [Final Evaluation][TOT= 396][ 47 %] ! [Final Evaluation][TOT= 396][ 48 %] ! [Final Evaluation][TOT= 396][ 49 %] ! [Final Evaluation][TOT= 396][ 50 %] ! [Final Evaluation][TOT= 396][ 51 %] ! [Final Evaluation][TOT= 396][ 52 %] ! [Final Evaluation][TOT= 396][ 53 %] ! [Final Evaluation][TOT= 396][ 54 %] ! [Final Evaluation][TOT= 396][ 55 %] ! [Final Evaluation][TOT= 396][ 56 %] ! [Final Evaluation][TOT= 396][ 57 %] ! [Final Evaluation][TOT= 396][ 58 %] ! [Final Evaluation][TOT= 396][ 59 %] ! [Final Evaluation][TOT= 396][ 60 %] ! [Final Evaluation][TOT= 396][ 61 %] ! [Final Evaluation][TOT= 396][ 62 %] ! [Final Evaluation][TOT= 396][ 63 %] ! [Final Evaluation][TOT= 396][ 64 %] ! [Final Evaluation][TOT= 396][ 65 %] ! [Final Evaluation][TOT= 396][ 66 %] ! [Final Evaluation][TOT= 396][ 67 %] ! [Final Evaluation][TOT= 396][ 68 %] ! [Final Evaluation][TOT= 396][ 69 %] ! [Final Evaluation][TOT= 396][ 70 %] ! [Final Evaluation][TOT= 396][ 71 %] ! [Final Evaluation][TOT= 396][ 72 %] ! [Final Evaluation][TOT= 396][ 73 %] ! [Final Evaluation][TOT= 396][ 74 %] ! [Final Evaluation][TOT= 396][ 75 %] ! [Final Evaluation][TOT= 396][ 76 %] ! [Final Evaluation][TOT= 396][ 77 %] ! [Final Evaluation][TOT= 396][ 78 %] ! [Final Evaluation][TOT= 396][ 79 %] ! [Final Evaluation][TOT= 396][ 80 %] ! [Final Evaluation][TOT= 396][ 81 %] ! [Final Evaluation][TOT= 396][ 82 %] ! [Final Evaluation][TOT= 396][ 83 %] ! [Final Evaluation][TOT= 396][ 84 %] ! [Final Evaluation][TOT= 396][ 85 %] ! [Final Evaluation][TOT= 396][ 86 %] ! [Final Evaluation][TOT= 396][ 87 %] ! [Final Evaluation][TOT= 396][ 88 %] ! [Final Evaluation][TOT= 396][ 89 %] ! [Final Evaluation][TOT= 396][ 90 %] ! [Final Evaluation][TOT= 396][ 91 %] ! [Final Evaluation][TOT= 396][ 92 %] ! [Final Evaluation][TOT= 396][ 93 %] ! [Final Evaluation][TOT= 396][ 94 %] ! [Final Evaluation][TOT= 396][ 95 %] ! [Final Evaluation][TOT= 396][ 96 %] ! [Final Evaluation][TOT= 396][ 97 %] ! [Final Evaluation][TOT= 396][ 98 %] ! [Final Evaluation][TOT= 396][ 99 %] ! [Final Evaluation][TOT= 396][100 %] ! [Final Evaluation][TOT= 389][ 0 %] ! [Final Evaluation][TOT= 389][ 1 %] ! [Final Evaluation][TOT= 389][ 2 %] ! [Final Evaluation][TOT= 389][ 3 %] ! [Final Evaluation][TOT= 389][ 4 %] ! [Final Evaluation][TOT= 389][ 5 %] ! [Final Evaluation][TOT= 389][ 6 %] ! [Final Evaluation][TOT= 389][ 7 %] ! [Final Evaluation][TOT= 389][ 8 %] ! [Final Evaluation][TOT= 389][ 9 %] ! [Final Evaluation][TOT= 389][ 10 %] ! [Final Evaluation][TOT= 389][ 11 %] ! [Final Evaluation][TOT= 389][ 12 %] ! [Final Evaluation][TOT= 389][ 13 %] ! [Final Evaluation][TOT= 389][ 14 %] ! [Final Evaluation][TOT= 389][ 15 %] ! [Final Evaluation][TOT= 389][ 16 %] ! [Final Evaluation][TOT= 389][ 17 %] ! [Final Evaluation][TOT= 389][ 18 %] ! [Final Evaluation][TOT= 389][ 19 %] ! [Final Evaluation][TOT= 389][ 20 %] ! [Final Evaluation][TOT= 389][ 21 %] ! [Final Evaluation][TOT= 389][ 22 %] ! [Final Evaluation][TOT= 389][ 23 %] ! [Final Evaluation][TOT= 389][ 24 %] ! [Final Evaluation][TOT= 389][ 25 %] ! [Final Evaluation][TOT= 389][ 26 %] ! [Final Evaluation][TOT= 389][ 27 %] ! [Final Evaluation][TOT= 389][ 28 %] ! [Final Evaluation][TOT= 389][ 29 %] ! [Final Evaluation][TOT= 389][ 30 %] ! [Final Evaluation][TOT= 389][ 31 %] ! [Final Evaluation][TOT= 389][ 32 %] ! [Final Evaluation][TOT= 389][ 33 %] ! [Final Evaluation][TOT= 389][ 34 %] ! [Final Evaluation][TOT= 389][ 35 %] ! [Final Evaluation][TOT= 389][ 36 %] ! [Final Evaluation][TOT= 389][ 37 %] ! [Final Evaluation][TOT= 389][ 38 %] ! [Final Evaluation][TOT= 389][ 39 %] ! [Final Evaluation][TOT= 389][ 40 %] ! [Final Evaluation][TOT= 389][ 41 %] ! [Final Evaluation][TOT= 389][ 42 %] ! [Final Evaluation][TOT= 389][ 43 %] ! [Final Evaluation][TOT= 389][ 44 %] ! [Final Evaluation][TOT= 389][ 45 %] ! [Final Evaluation][TOT= 389][ 46 %] ! [Final Evaluation][TOT= 389][ 47 %] ! [Final Evaluation][TOT= 389][ 48 %] ! [Final Evaluation][TOT= 389][ 49 %] ! [Final Evaluation][TOT= 389][ 50 %] ! [Final Evaluation][TOT= 389][ 51 %] ! [Final Evaluation][TOT= 389][ 52 %] ! [Final Evaluation][TOT= 389][ 53 %] ! [Final Evaluation][TOT= 389][ 54 %] ! [Final Evaluation][TOT= 389][ 55 %] ! [Final Evaluation][TOT= 389][ 56 %] ! [Final Evaluation][TOT= 389][ 57 %] ! [Final Evaluation][TOT= 389][ 58 %] ! [Final Evaluation][TOT= 389][ 59 %] ! [Final Evaluation][TOT= 389][ 60 %] ! [Final Evaluation][TOT= 389][ 61 %] ! [Final Evaluation][TOT= 389][ 62 %] ! [Final Evaluation][TOT= 389][ 63 %] ! [Final Evaluation][TOT= 389][ 64 %] ! [Final Evaluation][TOT= 389][ 65 %] ! [Final Evaluation][TOT= 389][ 66 %] ! [Final Evaluation][TOT= 389][ 67 %] ! [Final Evaluation][TOT= 389][ 68 %] ! [Final Evaluation][TOT= 389][ 69 %] ! [Final Evaluation][TOT= 389][ 70 %] ! [Final Evaluation][TOT= 389][ 71 %] ! [Final Evaluation][TOT= 389][ 72 %] ! [Final Evaluation][TOT= 389][ 73 %] ! [Final Evaluation][TOT= 389][ 74 %] ! [Final Evaluation][TOT= 389][ 75 %] ! [Final Evaluation][TOT= 389][ 76 %] ! [Final Evaluation][TOT= 389][ 77 %] ! [Final Evaluation][TOT= 389][ 78 %] ! [Final Evaluation][TOT= 389][ 79 %] ! [Final Evaluation][TOT= 389][ 80 %] ! [Final Evaluation][TOT= 389][ 81 %] ! [Final Evaluation][TOT= 389][ 82 %] ! [Final Evaluation][TOT= 389][ 83 %] ! [Final Evaluation][TOT= 389][ 84 %] ! [Final Evaluation][TOT= 389][ 85 %] ! [Final Evaluation][TOT= 389][ 86 %] ! [Final Evaluation][TOT= 389][ 87 %] ! [Final Evaluation][TOT= 389][ 88 %] ! [Final Evaluation][TOT= 389][ 89 %] ! [Final Evaluation][TOT= 389][ 90 %] ! [Final Evaluation][TOT= 389][ 91 %] ! [Final Evaluation][TOT= 389][ 92 %] ! [Final Evaluation][TOT= 389][ 93 %] ! [Final Evaluation][TOT= 389][ 94 %] ! [Final Evaluation][TOT= 389][ 95 %] ! [Final Evaluation][TOT= 389][ 96 %] ! [Final Evaluation][TOT= 389][ 97 %] ! [Final Evaluation][TOT= 389][ 98 %] ! [Final Evaluation][TOT= 389][ 99 %] ! [Final Evaluation][TOT= 389][100 %] ! [Final Evaluation][TOT= 383][ 0 %] ! [Final Evaluation][TOT= 383][ 1 %] ! [Final Evaluation][TOT= 383][ 2 %] ! [Final Evaluation][TOT= 383][ 3 %] ! [Final Evaluation][TOT= 383][ 4 %] ! [Final Evaluation][TOT= 383][ 5 %] ! [Final Evaluation][TOT= 383][ 6 %] ! [Final Evaluation][TOT= 383][ 7 %] ! [Final Evaluation][TOT= 383][ 8 %] ! [Final Evaluation][TOT= 383][ 9 %] ! [Final Evaluation][TOT= 383][ 10 %] ! [Final Evaluation][TOT= 383][ 11 %] ! [Final Evaluation][TOT= 383][ 12 %] ! [Final Evaluation][TOT= 383][ 13 %] ! [Final Evaluation][TOT= 383][ 14 %] ! [Final Evaluation][TOT= 383][ 15 %] ! [Final Evaluation][TOT= 383][ 16 %] ! [Final Evaluation][TOT= 383][ 17 %] ! [Final Evaluation][TOT= 383][ 18 %] ! [Final Evaluation][TOT= 383][ 19 %] ! [Final Evaluation][TOT= 383][ 20 %] ! [Final Evaluation][TOT= 383][ 21 %] ! [Final Evaluation][TOT= 383][ 22 %] ! [Final Evaluation][TOT= 383][ 23 %] ! [Final Evaluation][TOT= 383][ 24 %] ! [Final Evaluation][TOT= 383][ 25 %] ! [Final Evaluation][TOT= 383][ 26 %] ! [Final Evaluation][TOT= 383][ 27 %] ! [Final Evaluation][TOT= 383][ 28 %] ! [Final Evaluation][TOT= 383][ 29 %] ! [Final Evaluation][TOT= 383][ 30 %] ! [Final Evaluation][TOT= 383][ 31 %] ! [Final Evaluation][TOT= 383][ 32 %] ! [Final Evaluation][TOT= 383][ 33 %] ! [Final Evaluation][TOT= 383][ 34 %] ! [Final Evaluation][TOT= 383][ 35 %] ! [Final Evaluation][TOT= 383][ 36 %] ! [Final Evaluation][TOT= 383][ 37 %] ! [Final Evaluation][TOT= 383][ 38 %] ! [Final Evaluation][TOT= 383][ 39 %] ! [Final Evaluation][TOT= 383][ 40 %] ! [Final Evaluation][TOT= 383][ 41 %] ! [Final Evaluation][TOT= 383][ 42 %] ! [Final Evaluation][TOT= 383][ 43 %] ! [Final Evaluation][TOT= 383][ 44 %] ! [Final Evaluation][TOT= 383][ 45 %] ! [Final Evaluation][TOT= 383][ 46 %] ! [Final Evaluation][TOT= 383][ 47 %] ! [Final Evaluation][TOT= 383][ 48 %] ! [Final Evaluation][TOT= 383][ 49 %] ! [Final Evaluation][TOT= 383][ 50 %] ! [Final Evaluation][TOT= 383][ 51 %] ! [Final Evaluation][TOT= 383][ 52 %] ! [Final Evaluation][TOT= 383][ 53 %] ! [Final Evaluation][TOT= 383][ 54 %] ! [Final Evaluation][TOT= 383][ 55 %] ! [Final Evaluation][TOT= 383][ 56 %] ! [Final Evaluation][TOT= 383][ 57 %] ! [Final Evaluation][TOT= 383][ 58 %] ! [Final Evaluation][TOT= 383][ 59 %] ! [Final Evaluation][TOT= 383][ 60 %] ! [Final Evaluation][TOT= 383][ 61 %] ! [Final Evaluation][TOT= 383][ 62 %] ! [Final Evaluation][TOT= 383][ 63 %] ! [Final Evaluation][TOT= 383][ 64 %] ! [Final Evaluation][TOT= 383][ 65 %] ! [Final Evaluation][TOT= 383][ 66 %] ! [Final Evaluation][TOT= 383][ 67 %] ! [Final Evaluation][TOT= 383][ 68 %] ! [Final Evaluation][TOT= 383][ 69 %] ! [Final Evaluation][TOT= 383][ 70 %] ! [Final Evaluation][TOT= 383][ 71 %] ! [Final Evaluation][TOT= 383][ 72 %] ! [Final Evaluation][TOT= 383][ 73 %] ! [Final Evaluation][TOT= 383][ 74 %] ! [Final Evaluation][TOT= 383][ 75 %] ! [Final Evaluation][TOT= 383][ 76 %] ! [Final Evaluation][TOT= 383][ 77 %] ! [Final Evaluation][TOT= 383][ 78 %] ! [Final Evaluation][TOT= 383][ 79 %] ! [Final Evaluation][TOT= 383][ 80 %] ! [Final Evaluation][TOT= 383][ 81 %] ! [Final Evaluation][TOT= 383][ 82 %] ! [Final Evaluation][TOT= 383][ 83 %] ! [Final Evaluation][TOT= 383][ 84 %] ! [Final Evaluation][TOT= 383][ 85 %] ! [Final Evaluation][TOT= 383][ 86 %] ! [Final Evaluation][TOT= 383][ 87 %] ! [Final Evaluation][TOT= 383][ 88 %] ! [Final Evaluation][TOT= 383][ 89 %] ! [Final Evaluation][TOT= 383][ 90 %] ! [Final Evaluation][TOT= 383][ 91 %] ! [Final Evaluation][TOT= 383][ 92 %] ! [Final Evaluation][TOT= 383][ 93 %] ! [Final Evaluation][TOT= 383][ 94 %] ! [Final Evaluation][TOT= 383][ 95 %] ! [Final Evaluation][TOT= 383][ 96 %] ! [Final Evaluation][TOT= 383][ 97 %] ! [Final Evaluation][TOT= 383][ 98 %] ! [Final Evaluation][TOT= 383][ 99 %] ! [Final Evaluation][TOT= 383][100 %] ! [Final Evaluation][TOT= 397][ 0 %] ! [Final Evaluation][TOT= 397][ 1 %] ! [Final Evaluation][TOT= 397][ 2 %] ! [Final Evaluation][TOT= 397][ 3 %] ! [Final Evaluation][TOT= 397][ 4 %] ! [Final Evaluation][TOT= 397][ 5 %] ! [Final Evaluation][TOT= 397][ 6 %] ! [Final Evaluation][TOT= 397][ 7 %] ! [Final Evaluation][TOT= 397][ 8 %] ! [Final Evaluation][TOT= 397][ 9 %] ! [Final Evaluation][TOT= 397][ 10 %] ! [Final Evaluation][TOT= 397][ 11 %] ! [Final Evaluation][TOT= 397][ 12 %] ! [Final Evaluation][TOT= 397][ 13 %] ! [Final Evaluation][TOT= 397][ 14 %] ! [Final Evaluation][TOT= 397][ 15 %] ! [Final Evaluation][TOT= 397][ 16 %] ! [Final Evaluation][TOT= 397][ 17 %] ! [Final Evaluation][TOT= 397][ 18 %] ! [Final Evaluation][TOT= 397][ 19 %] ! [Final Evaluation][TOT= 397][ 20 %] ! [Final Evaluation][TOT= 397][ 21 %] ! [Final Evaluation][TOT= 397][ 22 %] ! [Final Evaluation][TOT= 397][ 23 %] ! [Final Evaluation][TOT= 397][ 24 %] ! [Final Evaluation][TOT= 397][ 25 %] ! [Final Evaluation][TOT= 397][ 26 %] ! [Final Evaluation][TOT= 397][ 27 %] ! [Final Evaluation][TOT= 397][ 28 %] ! [Final Evaluation][TOT= 397][ 29 %] ! [Final Evaluation][TOT= 397][ 30 %] ! [Final Evaluation][TOT= 397][ 31 %] ! [Final Evaluation][TOT= 397][ 32 %] ! [Final Evaluation][TOT= 397][ 33 %] ! [Final Evaluation][TOT= 397][ 34 %] ! [Final Evaluation][TOT= 397][ 35 %] ! [Final Evaluation][TOT= 397][ 36 %] ! [Final Evaluation][TOT= 397][ 37 %] ! [Final Evaluation][TOT= 397][ 38 %] ! [Final Evaluation][TOT= 397][ 39 %] ! [Final Evaluation][TOT= 397][ 40 %] ! [Final Evaluation][TOT= 397][ 41 %] ! [Final Evaluation][TOT= 397][ 42 %] ! [Final Evaluation][TOT= 397][ 43 %] ! [Final Evaluation][TOT= 397][ 44 %] ! [Final Evaluation][TOT= 397][ 45 %] ! [Final Evaluation][TOT= 397][ 46 %] ! [Final Evaluation][TOT= 397][ 47 %] ! [Final Evaluation][TOT= 397][ 48 %] ! [Final Evaluation][TOT= 397][ 49 %] ! [Final Evaluation][TOT= 397][ 50 %] ! [Final Evaluation][TOT= 397][ 51 %] ! [Final Evaluation][TOT= 397][ 52 %] ! [Final Evaluation][TOT= 397][ 53 %] ! [Final Evaluation][TOT= 397][ 54 %] ! [Final Evaluation][TOT= 397][ 55 %] ! [Final Evaluation][TOT= 397][ 56 %] ! [Final Evaluation][TOT= 397][ 57 %] ! [Final Evaluation][TOT= 397][ 58 %] ! [Final Evaluation][TOT= 397][ 59 %] ! [Final Evaluation][TOT= 397][ 60 %] ! [Final Evaluation][TOT= 397][ 61 %] ! [Final Evaluation][TOT= 397][ 62 %] ! [Final Evaluation][TOT= 397][ 63 %] ! [Final Evaluation][TOT= 397][ 64 %] ! [Final Evaluation][TOT= 397][ 65 %] ! [Final Evaluation][TOT= 397][ 66 %] ! [Final Evaluation][TOT= 397][ 67 %] ! [Final Evaluation][TOT= 397][ 68 %] ! [Final Evaluation][TOT= 397][ 69 %] ! [Final Evaluation][TOT= 397][ 70 %] ! [Final Evaluation][TOT= 397][ 71 %] ! [Final Evaluation][TOT= 397][ 72 %] ! [Final Evaluation][TOT= 397][ 73 %] ! [Final Evaluation][TOT= 397][ 74 %] ! [Final Evaluation][TOT= 397][ 75 %] ! [Final Evaluation][TOT= 397][ 76 %] ! [Final Evaluation][TOT= 397][ 77 %] ! [Final Evaluation][TOT= 397][ 78 %] ! [Final Evaluation][TOT= 397][ 79 %] ! [Final Evaluation][TOT= 397][ 80 %] ! [Final Evaluation][TOT= 397][ 81 %] ! [Final Evaluation][TOT= 397][ 82 %] ! [Final Evaluation][TOT= 397][ 83 %] ! [Final Evaluation][TOT= 397][ 84 %] ! [Final Evaluation][TOT= 397][ 85 %] ! [Final Evaluation][TOT= 397][ 86 %] ! [Final Evaluation][TOT= 397][ 87 %] ! [Final Evaluation][TOT= 397][ 88 %] ! [Final Evaluation][TOT= 397][ 89 %] ! [Final Evaluation][TOT= 397][ 90 %] ! [Final Evaluation][TOT= 397][ 91 %] ! [Final Evaluation][TOT= 397][ 92 %] ! [Final Evaluation][TOT= 397][ 93 %] ! [Final Evaluation][TOT= 397][ 94 %] ! [Final Evaluation][TOT= 397][ 95 %] ! [Final Evaluation][TOT= 397][ 96 %] ! [Final Evaluation][TOT= 397][ 97 %] ! [Final Evaluation][TOT= 397][ 98 %] ! [Final Evaluation][TOT= 397][ 99 %] ! [Final Evaluation][TOT= 397][100 %] t/TCoffee.t .............. ok 1 - An object of class 'Bio::Tools::Run::Alignment::TCoffee' isa 'Bio::Tools::Run::Alignment::TCoffee' ok 2 - set factory parameter ok 3 - get factory parameter ok 4 - Code tested only on t_coffee versions > 1.22 #Single Thread ok 5 ok 6 #Single Thread ok 7 #Single Thread #Single Thread #Single Thread #Single Thread #Single Thread ok 8 ok 9 - no T-COFFEE errors ok 10 ok 11 ok 12 #Single Thread #Single Thread ok 13 ok 14 ok 15 #Single Thread #Single Thread ok 16 ok 17 - expect 21 >= val >= 23 ok 18 - expect 47 or 48 #Single Thread ok 19 - simple generic run ok 20 #Single Thread #Single Thread #Single Thread #Single Thread #Single Thread ok 21 ok 22 - no T-COFFEE errors ok 23 ok 24 - expect 13 or 14 ok 25 - expect 41 or 42 1..25 rmdir /tmp/hGZtDhCCn3 ok All tests successful. Files=7, Tests=26, 9 wallclock secs ( 0.03 usr 0.00 sys + 4.34 cusr 4.52 csys = 8.89 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-tools-run-alignment-tcoffee-perl/ make -j2 install DESTDIR=/<>/debian/libbio-tools-run-alignment-tcoffee-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Installing /<>/debian/libbio-tools-run-alignment-tcoffee-perl/usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm Installing /<>/debian/libbio-tools-run-alignment-tcoffee-perl/usr/share/man/man3/Bio::Tools::Run::Alignment::TCoffee.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-tools-run-alignment-tcoffee-perl' in '../libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb'. dpkg-genbuildinfo -O../libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.buildinfo dpkg-genchanges -O../libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T14:40:47Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.changes: -------------------------------------------------------------- Format: 1.8 Date: Fri, 14 Oct 2022 16:06:32 +0100 Source: libbio-tools-run-alignment-tcoffee-perl Binary: libbio-tools-run-alignment-tcoffee-perl Architecture: source all Version: 1.7.4-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Perl Group Changed-By: Jelmer Vernooij Description: libbio-tools-run-alignment-tcoffee-perl - Bioperl interface to T-Coffee Changes: libbio-tools-run-alignment-tcoffee-perl (1.7.4-3) unstable; urgency=medium . [ Debian Janitor ] * Remove constraints unnecessary since buster * Update standards version to 4.6.0, no changes needed. Checksums-Sha1: 240586bac92b3ee5f76c8aa7f3454ca908d18030 1650 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 979361b47d7fc4ec95b8570552044f415505b78e 2544 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz 3cba5b45a21a38c1eda1bf4c047e382c34c17464 23064 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb 96bcb9a56deb8f118c7fe6b96d899a46bbb964fb 5694 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.buildinfo Checksums-Sha256: 894bb1d919359a81e7592f964e5fcb8f85cbc065c81ca0ab9490cad4fdeb951b 1650 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 6bcb9e3ad0bc55740100940a7b2879202229bcb7b74f7b17cb5dcb8aab8d0fe8 2544 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz 639ca74debdaf412cea990aa16fc5c8ffb9b055f73cad8e4f4a4fcee54ef72f3 23064 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb 48d35181a6a5512b2daa1626d92780ff28b195f706d2483d7dd8adac3bd5004e 5694 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.buildinfo Files: 8603b47a720e6cce8c2b9975cff3952a 1650 science optional libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 222388134fa0cd11a3f7305c65e533a1 2544 science optional libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.debian.tar.xz 608dda49487563c469655868a0967ec3 23064 science optional libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb b0bc4e717835e1ee8a66bd1125819ba2 5694 science optional libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-tools-run-alignment-tcoffee-perl Binary: libbio-tools-run-alignment-tcoffee-perl Architecture: all source Version: 1.7.4-3 Checksums-Md5: 8603b47a720e6cce8c2b9975cff3952a 1650 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 608dda49487563c469655868a0967ec3 23064 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb Checksums-Sha1: 240586bac92b3ee5f76c8aa7f3454ca908d18030 1650 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 3cba5b45a21a38c1eda1bf4c047e382c34c17464 23064 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb Checksums-Sha256: 894bb1d919359a81e7592f964e5fcb8f85cbc065c81ca0ab9490cad4fdeb951b 1650 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc 639ca74debdaf412cea990aa16fc5c8ffb9b055f73cad8e4f4a4fcee54ef72f3 23064 libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 14:40:47 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), clustalw (= 2.1+lgpl-7), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libbio-perl-perl (= 1.7.8-1), libbio-perl-run-perl (= 1.7.3-11), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-4), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdevel-checkbin-perl (= 0.04-3), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-sort-perl (= 1.01-3), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libio-pty-perl (= 1:1.20-1+b2), libio-string-perl (= 1.08-4), libipc-run-perl (= 20231003.0-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-4), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256.6-1), libtest-exception-perl (= 0.43-3), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), t-coffee (= 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1665759992" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-tools-run-alignment-tcoffee-perl_1.7.4-3_all.deb ------------------------------------------------------- new Debian package, version 2.0. size 23064 bytes: control archive=856 bytes. 622 bytes, 15 lines control 590 bytes, 6 lines md5sums Package: libbio-tools-run-alignment-tcoffee-perl Version: 1.7.4-3 Architecture: all Maintainer: Debian Perl Group Installed-Size: 68 Depends: perl:any, libbio-perl-perl, libbio-perl-run-perl, t-coffee Section: science Priority: optional Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-TCoffee Description: Bioperl interface to T-Coffee Bio::Tools::Run::Alignment::TCoffee provides a Perl interface to T-Coffee, a program for multiple alignments of DNA, RNA, and protein sequences and structures. . This module distribution is part of the Bioperl project. drwxr-xr-x root/root 0 2022-10-14 15:06 ./ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/doc/libbio-tools-run-alignment-tcoffee-perl/ -rw-r--r-- root/root 602 2022-10-14 15:06 ./usr/share/doc/libbio-tools-run-alignment-tcoffee-perl/changelog.Debian.gz -rw-r--r-- root/root 582 2018-07-09 18:30 ./usr/share/doc/libbio-tools-run-alignment-tcoffee-perl/changelog.gz -rw-r--r-- root/root 1135 2022-10-14 15:06 ./usr/share/doc/libbio-tools-run-alignment-tcoffee-perl/copyright drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 231 2022-10-14 15:06 ./usr/share/lintian/overrides/libbio-tools-run-alignment-tcoffee-perl drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/man/man3/ -rw-r--r-- root/root 8665 2022-10-14 15:06 ./usr/share/man/man3/Bio::Tools::Run::Alignment::TCoffee.3pm.gz drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/perl5/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/perl5/Bio/Tools/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/perl5/Bio/Tools/Run/ drwxr-xr-x root/root 0 2022-10-14 15:06 ./usr/share/perl5/Bio/Tools/Run/Alignment/ -rw-r--r-- root/root 39380 2022-10-14 15:06 ./usr/share/perl5/Bio/Tools/Run/Alignment/TCoffee.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 800 Build-Time: 12 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/libbio-tools-run-alignment-tcoffee-perl_1.7.4-3.dsc Machine Architecture: amd64 Package: libbio-tools-run-alignment-tcoffee-perl Package-Time: 23 Source-Version: 1.7.4-3 Space: 800 Status: successful Version: 1.7.4-3 -------------------------------------------------------------------------------- Finished at 2024-09-15T14:40:47Z Build needed 00:00:23, 800k disk space