sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==========================================================================================+ | libbio-tools-run-alignment-clustalw-perl 1.7.4-4 (amd64) Sun, 15 Sep 2024 14:40:07 +0000 | +==========================================================================================+ Package: libbio-tools-run-alignment-clustalw-perl Version: 1.7.4-4 Source Version: 1.7.4-4 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-0df5c85d-a675-498f-a524-b63ad6f8ba96' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-run-alignment-clustalw-perl_1.7.4-4 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-run-alignment-clustalw-perl_1.7.4-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-clustalw-perl-7qnovU/resolver-vIv4Ij' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-clustalw-perl-7qnovU/libbio-tools-run-alignment-clustalw-perl-1.7.4' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-tools-run-alignment-clustalw-perl-7qnovU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, clustalw, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [739 B] Get:5 copy:/<>/apt_archive ./ Packages [729 B] Fetched 2077 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfakeroot libfile-sort-perl libfile-stripnondeterminism-perl libicu72 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc clustalx seaview dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl libalgorithm-diff-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils clustalw debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfakeroot libfile-sort-perl libfile-stripnondeterminism-perl libicu72 libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 23.9 MB/23.9 MB of archives. After this operation, 88.3 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libio-pty-perl amd64 1:1.20-1+b2 [34.3 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 clustalw amd64 2.1+lgpl-7 [282 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libfile-sort-perl all 1.01-3 [21.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libbio-perl-run-perl all 1.7.3-11 [528 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libdevel-checkbin-perl all 0.04-3 [5228 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.9 MB in 0s (163 MB/s) Selecting previously unselected package sensible-utils. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libbio-perl-run-perl (1.7.3-11) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 clustalw_2.1+lgpl-7 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libbio-perl-perl_1.7.8-1 libbio-perl-run-perl_1.7.3-11 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdevel-checkbin-perl_0.04-3 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perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-run-alignment-clustalw-perl Binary: libbio-tools-run-alignment-clustalw-perl Architecture: all Version: 1.7.4-4 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-Clustalw Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-run-alignment-clustalw-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: clustalw, libbio-perl-perl , libbio-perl-run-perl , libdevel-checkbin-perl, perl Package-List: libbio-tools-run-alignment-clustalw-perl deb science optional arch=all Checksums-Sha1: 926fde7762db2c2e9aa3d94295fb8cf7c9994cc7 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz afbecfb4e13107fbe55b65b6f1ca32b17bf9f32b 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz Checksums-Sha256: 4e322d50fd945257f61609ed6e59c3e6817948166a6230d24d5ca23b507e331e 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz 965f00a501de21962ec1c853012d0e89fd5bec0b918d69920379a8ea26a1dd67 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz Files: 6820fcb8ca70c5fd75baa4bf979ab274 30259 libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz f5d8d608554a3ceae1819305ee47bb80 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXu9bMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGdLA/+KHzyYHubnj2tsx76crDPlYFPAwdMf4Rf Q6kOTqKh1HuGOGRhG2pFnBhsyurL05T4s2hUiu5zlOiDzqASe4nsKP7Gd8N6BvF9 A8FT7wOC1vMT9+cI39tOG8YfiakzB8/6kXYQ8wF1xRTtXJPQyzLRr+kosM+5dSzA 6w1Xe96GhgVQHOtVfLAhazxeR8GG1RW79uUFVNWR/4uh4XSBViF7cXF/8rke8WH8 hVHVw4cplZrMt9LjJUZDVt/H9obQmux6KwQzMbqT0LGQQo/B/aVJ9yxFoSDh6Qz+ poirqWbe4lJ+A9qrL8ucR/Zc1Q9jCDt6AQ4ADsGzVFuZzUQBeX6yVaW3UndpqToT c5Ei8+sjpT1V5yZPu9SZb8XA6C/28pxwdDVTtdL9AC0RFcyFsNO99HkAUhLJtWy5 9eV8K2HgF+1Bgvolf1PRK0PzDKDJjx6m2OwBHuNLYL9gSc/IJ4d3F44nd7h7ZzgZ yqvAgkeIuz3F3xmbFbHYChmt/qAiyiphazU9PxFH0d5LfuDjX0XOlXSViymdPNnG YZZnG7PujaPDdoHFz48hvzc9Wjkxz+8KOsVV3fO/g3OQnPqEuYA9dUzQ9dNMHb6x 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+------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-run-alignment-clustalw-perl_1.7.4-4 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-run-alignment-clustalw-perl_1.7.4-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-0df5c85d-a675-498f-a524-b63ad6f8ba96 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-tools-run-alignment-clustalw-perl dpkg-buildpackage: info: source version 1.7.4-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-tools-run-alignment-clustalw-perl using existing ./libbio-tools-run-alignment-clustalw-perl_1.7.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-tools-run-alignment-clustalw-perl in libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz dpkg-source: info: building libbio-tools-run-alignment-clustalw-perl in libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Locating bin:clustalw... found at /usr/bin/clustalw. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Tools::Run::Alignment::Clustalw Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Tools/Run/Alignment/Clustalw.pm blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm Manifying 1 pod document make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/Tools/Run/Alignment/Clustalw.pm loaded ok ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/Clustalw.t ............. ok 1 - Found input file ok 2 - Found profile1 file ok 3 - Found profile2 file ok 4 - An object of class 'Bio::Tools::Run::Alignment::Clustalw' isa 'Bio::Tools::Run::Alignment::Clustalw' ok 5 - program_dir returned correct default ok 6 - error_string returned correct default ok 7 - outfile_name returned correct default ok 8 - bootstrap returned correct default ok 9 - Correct exe default name ok 10 - check clustalw version 2.1 is less than 1.8 ok 11 - No error occured ok 12 - outfile_name returned something ok 13 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 14 - Correct number of seqs returned ok 15 - Score ok 16 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 17 - Correct number of seqs returned ok 18 - Got correct sequence by position ok 19 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 20 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 21 - Correct number of seqs returned ok 22 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 23 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 24 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok 25 - An object of class 'Bio::Tree::Tree' isa 'Bio::Tree::Tree' ok 26 - footprinting worked ok 27 - Got correct sequence by position ok 28 - Got correct sequence by position ok 29 - Set and got ktuple correctly ok 30 - Set and got topdiags correctly ok 31 - Set and got window correctly ok 32 - Set and got pairgap correctly ok 33 - Set and got fixedgap correctly ok 34 - Set and got floatgap correctly ok 35 - Set and got matrix correctly ok 36 - Set and got type correctly ok 37 - Set and got output correctly ok 38 - Set and got outfile correctly ok 39 - set and got quiet correctly ok 40 - set and got bootstrap correctly 1..40 ok All tests successful. Files=7, Tests=41, 1 wallclock secs ( 0.01 usr 0.02 sys + 0.72 cusr 0.15 csys = 0.90 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-tools-run-alignment-clustalw-perl/ make -j2 install DESTDIR=/<>/debian/libbio-tools-run-alignment-clustalw-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Installing /<>/debian/libbio-tools-run-alignment-clustalw-perl/usr/share/perl5/Bio/Tools/Run/Alignment/Clustalw.pm Installing /<>/debian/libbio-tools-run-alignment-clustalw-perl/usr/share/man/man3/Bio::Tools::Run::Alignment::Clustalw.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-tools-run-alignment-clustalw-perl' in '../libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb'. dpkg-genbuildinfo -O../libbio-tools-run-alignment-clustalw-perl_1.7.4-4_amd64.buildinfo dpkg-genchanges -O../libbio-tools-run-alignment-clustalw-perl_1.7.4-4_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T14:40:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-tools-run-alignment-clustalw-perl_1.7.4-4_amd64.changes: --------------------------------------------------------------- Format: 1.8 Date: Mon, 11 Mar 2024 13:13:03 +0100 Source: libbio-tools-run-alignment-clustalw-perl Binary: libbio-tools-run-alignment-clustalw-perl Architecture: source all Version: 1.7.4-4 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Perl Group Changed-By: Andreas Tille Description: libbio-tools-run-alignment-clustalw-perl - Bioperl interface to Clustal W Changes: libbio-tools-run-alignment-clustalw-perl (1.7.4-4) unstable; urgency=medium . * Team upload . [ Debian Janitor ] * Set upstream metadata fields: Bug-Database. * Update standards version to 4.6.2, no changes needed. . [ Andreas Tille ] * Add debian/salsa.ci to exclude i386 builds * Update lintian-overrides Checksums-Sha1: adc39329cb4e30017c59f1c0bc7eca91be1dd0c1 1606 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc afbecfb4e13107fbe55b65b6f1ca32b17bf9f32b 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz c07483bc41c7c04510668194453f0858d7ec628c 24488 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb 95d11bac9709a987896818c6922942ce3095f7ea 5573 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_amd64.buildinfo Checksums-Sha256: c2c966d1ec1f8d8dfb4c3ef71d7a84f6ca4dc389f28b7a1f681b2d463f6ecfa4 1606 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc 965f00a501de21962ec1c853012d0e89fd5bec0b918d69920379a8ea26a1dd67 2628 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.debian.tar.xz 6293c6c7ef73fe3559476dd5d0866877beeeedbfea644db4e332deece5a38ef7 24488 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb c758af724085d047db95ab58097f7024d3ea79ca4c2ff1ddb74a0d7a419ec871 5573 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24488 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb Checksums-Sha1: adc39329cb4e30017c59f1c0bc7eca91be1dd0c1 1606 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc c07483bc41c7c04510668194453f0858d7ec628c 24488 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb Checksums-Sha256: c2c966d1ec1f8d8dfb4c3ef71d7a84f6ca4dc389f28b7a1f681b2d463f6ecfa4 1606 libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc 6293c6c7ef73fe3559476dd5d0866877beeeedbfea644db4e332deece5a38ef7 24488 libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 14:40:22 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu 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SOURCE_DATE_EPOCH="1710159183" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-tools-run-alignment-clustalw-perl_1.7.4-4_all.deb -------------------------------------------------------- new Debian package, version 2.0. size 24488 bytes: control archive=844 bytes. 612 bytes, 15 lines control 596 bytes, 6 lines md5sums Package: libbio-tools-run-alignment-clustalw-perl Version: 1.7.4-4 Architecture: all Maintainer: Debian Perl Group Installed-Size: 71 Depends: perl:any, clustalw, libbio-perl-perl, libbio-perl-run-perl Section: science Priority: optional Homepage: https://metacpan.org/release/Bio-Tools-Run-Alignment-Clustalw Description: Bioperl interface to Clustal W Bio::Tools::Run::Alignment::Clustalw provides a Perl interface to Clustal W, a program for alignment of multiple nucleotide and peptide sequences. . This module distribution is part of the Bioperl project. drwxr-xr-x root/root 0 2024-03-11 12:13 ./ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/doc/libbio-tools-run-alignment-clustalw-perl/ -rw-r--r-- root/root 715 2024-03-11 12:13 ./usr/share/doc/libbio-tools-run-alignment-clustalw-perl/changelog.Debian.gz -rw-r--r-- root/root 496 2018-07-11 14:56 ./usr/share/doc/libbio-tools-run-alignment-clustalw-perl/changelog.gz -rw-r--r-- root/root 1101 2024-03-11 12:13 ./usr/share/doc/libbio-tools-run-alignment-clustalw-perl/copyright drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 200 2024-03-11 12:13 ./usr/share/lintian/overrides/libbio-tools-run-alignment-clustalw-perl drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/man/man3/ -rw-r--r-- root/root 9846 2024-03-11 12:13 ./usr/share/man/man3/Bio::Tools::Run::Alignment::Clustalw.3pm.gz drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/perl5/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/perl5/Bio/Tools/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/perl5/Bio/Tools/Run/ drwxr-xr-x root/root 0 2024-03-11 12:13 ./usr/share/perl5/Bio/Tools/Run/Alignment/ -rw-r--r-- root/root 41134 2024-03-11 12:13 ./usr/share/perl5/Bio/Tools/Run/Alignment/Clustalw.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 792 Build-Time: 3 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/libbio-tools-run-alignment-clustalw-perl_1.7.4-4.dsc Machine Architecture: amd64 Package: libbio-tools-run-alignment-clustalw-perl Package-Time: 15 Source-Version: 1.7.4-4 Space: 792 Status: successful Version: 1.7.4-4 -------------------------------------------------------------------------------- Finished at 2024-09-15T14:40:22Z Build needed 00:00:15, 792k disk space