sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-eutilities-perl 1.77-2 (amd64) Mon, 03 Jun 2024 17:25:42 +0000 | +==============================================================================+ Package: libbio-eutilities-perl Version: 1.77-2 Source Version: 1.77-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-2ea7316e-3b8d-4479-be32-138f1758297c' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-eutilities-perl_1.77-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-eutilities-perl_1.77-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-eutilities-perl-7MAyuH/resolver-KEd5eP' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 http://localhost:3142/debian unstable InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Fetched 571 kB in 2s (254 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: login passwd 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1564 kB of archives. After this operation, 57.3 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB] Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1564 kB in 0s (74.6 MB/s) (Reading database ... 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Setting up passwd (1:4.13+dfsg1-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-eutilities-perl_1.77-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-eutilities-perl-7MAyuH/libbio-eutilities-perl-1.77' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-eutilities-perl-7MAyuH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-asn1-entrezgene-perl, libbio-perl-perl, libhttp-message-perl, libtext-csv-perl, liburi-perl, libwww-perl, libxml-simple-perl, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-asn1-entrezgene-perl, libbio-perl-perl, libhttp-message-perl, libtext-csv-perl, liburi-perl, libwww-perl, libxml-simple-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [853 B] Get:5 copy:/<>/apt_archive ./ Packages [788 B] Fetched 2250 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libclone-perl libdata-stag-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtext-csv-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libtext-csv-xs-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libclone-perl libdata-stag-perl libdebhelper-perl libelf1t64 libencode-locale-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libtext-csv-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils ucf 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB/26.5 MB of archives. After this operation, 95.1 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.82-1+b1 [99.2 kB] Get:2 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB] Get:3 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:4 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [199 kB] Get:7 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:8 file:/srv/reprepro perl-5.40/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-3+b1 [313 kB] Get:9 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:10 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:13 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:14 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:16 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:17 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:19 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:20 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:21 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:22 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:23 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:24 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:25 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:28 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:32 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:33 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:36 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:37 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:38 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:39 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:41 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:46 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:54 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:58 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:59 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libtext-csv-perl all 2.04-1 [112 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.6 MB in 0s (161 MB/s) Selecting previously unselected package netbase. (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Preparing to unpack .../71-libxml-libxml-perl_2.0207+dfsg+really+2.0134-3+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-3+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../72-libxml-simple-perl_2.25-2_all.deb ... Unpacking libxml-simple-perl (2.25-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../73-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.2.1-3) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up liburi-perl (5.28-1) ... Setting up libtext-csv-perl (2.04-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libnet-http-perl (6.23-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:amd64 (3.82-1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-3+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.15.3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-asn1-entrezgene-perl_1.730-3 libbio-cluster-perl_1.7.3-6 libbio-perl-perl_1.7.8-1 libbio-variation-perl_1.7.5-3 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-1 libclone-perl_0.46-1+b3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libencode-locale-perl_1.05-3 libexpat1_2.6.2-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhtml-parser-perl_3.82-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.085-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-7 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtext-csv-perl_2.04-1 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.1-7 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-3+b1 libxml-namespacesupport-perl_1.12-2 libxml-parser-perl_2.47-1+b3 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml-twig-perl_1:3.52-3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.2.1-3 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-eutilities-perl Binary: libbio-eutilities-perl Architecture: all Version: 1.77-2 Maintainer: Debian Perl Group Uploaders: Carnë Draug Homepage: https://metacpan.org/release/Bio-EUtilities Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-eutilities-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-eutilities-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-asn1-entrezgene-perl , libbio-perl-perl , libhttp-message-perl , libtext-csv-perl , liburi-perl , libwww-perl , libxml-simple-perl , perl Package-List: libbio-eutilities-perl deb perl optional arch=all Checksums-Sha1: ee2a4960ae19eb212b9c9d8f81f149c80a9f9b65 98643 libbio-eutilities-perl_1.77.orig.tar.gz 93110b21a4a4d05f3faf89e3cdfaffad45ed6a0e 5356 libbio-eutilities-perl_1.77-2.debian.tar.xz Checksums-Sha256: 4d018c8cbda73c3d71487165261a3dfc4e823f8e22747497f6a586d5ad6f737f 98643 libbio-eutilities-perl_1.77.orig.tar.gz 6c611cf1f466f4e54266a3fe2f6852eeba3aa42973f0ec914625d719e7eb711b 5356 libbio-eutilities-perl_1.77-2.debian.tar.xz Files: b4f862d0ec104628bce8e280d767adf0 98643 libbio-eutilities-perl_1.77.orig.tar.gz 7f8a558f55cf02ce513d44f2211af53b 5356 libbio-eutilities-perl_1.77-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmNLcvcACgkQV5wWDUye I+hx2g//ekO43cGa5ovp54hnEdgtsIHJ8OLZhh48XswLD5FMtd08XU5FQCL09TfA dBL5VFzmr8yYsFA15bpO2V2Wp65yLK0E8/kJjDkLFtVit8DrLDNau0zMVuW5wZgP YNQrfkcSF98/firWCmg0ybMDRkHdU/m4ka2w7FeJ4qcr0PvrTGg1emAQvabxaQJo 59dBqHx1awJEyD0bsGn9OPLp5N6+RjUnF+Uv1zvi4b9RAuAI2h8x0W7q5//TGnZ5 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debian/patches/series dpkg-source: info: applying inline-DTDs-on-testsuite dpkg-source: info: applying autopkgtest-compile.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-eutilities-perl_1.77-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-eutilities-perl_1.77-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-2ea7316e-3b8d-4479-be32-138f1758297c SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-eutilities-perl dpkg-buildpackage: info: source version 1.77-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jelmer Vernooij dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-eutilities-perl using existing ./libbio-eutilities-perl_1.77.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-eutilities-perl in libbio-eutilities-perl_1.77-2.debian.tar.xz dpkg-source: info: building libbio-eutilities-perl in libbio-eutilities-perl_1.77-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::EUtilities Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Tools/EUtilities/Link/LinkSet.pm blib/lib/Bio/Tools/EUtilities/Link/LinkSet.pm cp lib/Bio/Tools/EUtilities/Summary/Item.pm blib/lib/Bio/Tools/EUtilities/Summary/Item.pm cp lib/Bio/Tools/EUtilities/Summary/ItemContainerI.pm blib/lib/Bio/Tools/EUtilities/Summary/ItemContainerI.pm cp lib/Bio/Tools/EUtilities/Link.pm blib/lib/Bio/Tools/EUtilities/Link.pm cp lib/Bio/Tools/EUtilities.pm blib/lib/Bio/Tools/EUtilities.pm cp lib/Bio/Tools/EUtilities/EUtilDataI.pm blib/lib/Bio/Tools/EUtilities/EUtilDataI.pm cp lib/Bio/EUtilities.pm blib/lib/Bio/EUtilities.pm cp lib/Bio/Tools/EUtilities/Info/LinkInfo.pm blib/lib/Bio/Tools/EUtilities/Info/LinkInfo.pm cp lib/Bio/Tools/EUtilities/HistoryI.pm blib/lib/Bio/Tools/EUtilities/HistoryI.pm cp lib/Bio/Tools/EUtilities/Info/FieldInfo.pm blib/lib/Bio/Tools/EUtilities/Info/FieldInfo.pm cp lib/Bio/Tools/EUtilities/EUtilParameters.pm blib/lib/Bio/Tools/EUtilities/EUtilParameters.pm cp lib/Bio/Tools/EUtilities/Link/UrlLink.pm blib/lib/Bio/Tools/EUtilities/Link/UrlLink.pm cp lib/Bio/Tools/EUtilities/Query.pm blib/lib/Bio/Tools/EUtilities/Query.pm cp lib/Bio/DB/EUtilities.pm blib/lib/Bio/DB/EUtilities.pm cp lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm blib/lib/Bio/Tools/EUtilities/Query/GlobalQuery.pm cp lib/Bio/Tools/EUtilities/Summary.pm blib/lib/Bio/Tools/EUtilities/Summary.pm cp lib/Bio/Tools/EUtilities/Summary/DocSum.pm blib/lib/Bio/Tools/EUtilities/Summary/DocSum.pm cp lib/Bio/Tools/EUtilities/Info.pm blib/lib/Bio/Tools/EUtilities/Info.pm cp lib/Bio/Tools/EUtilities/History.pm blib/lib/Bio/Tools/EUtilities/History.pm cp bin/bp_einfo blib/script/bp_einfo cp bin/bp_genbank_ref_extractor blib/script/bp_genbank_ref_extractor "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_einfo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank_ref_extractor Manifying 2 pod documents Manifying 19 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..21 ok 1 - Bio/DB/EUtilities.pm loaded ok ok 2 - Bio/EUtilities.pm loaded ok ok 3 - Bio/Tools/EUtilities.pm loaded ok ok 4 - Bio/Tools/EUtilities/EUtilDataI.pm loaded ok ok 5 - Bio/Tools/EUtilities/EUtilParameters.pm loaded ok ok 6 - Bio/Tools/EUtilities/History.pm loaded ok ok 7 - Bio/Tools/EUtilities/HistoryI.pm loaded ok ok 8 - Bio/Tools/EUtilities/Info.pm loaded ok ok 9 - Bio/Tools/EUtilities/Info/FieldInfo.pm loaded ok ok 10 - Bio/Tools/EUtilities/Info/LinkInfo.pm loaded ok ok 11 - Bio/Tools/EUtilities/Link.pm loaded ok ok 12 - Bio/Tools/EUtilities/Link/LinkSet.pm loaded ok ok 13 - Bio/Tools/EUtilities/Link/UrlLink.pm loaded ok ok 14 - Bio/Tools/EUtilities/Query.pm loaded ok ok 15 - Bio/Tools/EUtilities/Query/GlobalQuery.pm loaded ok ok 16 - Bio/Tools/EUtilities/Summary.pm loaded ok ok 17 - Bio/Tools/EUtilities/Summary/DocSum.pm loaded ok ok 18 - Bio/Tools/EUtilities/Summary/Item.pm loaded ok ok 19 - Bio/Tools/EUtilities/Summary/ItemContainerI.pm loaded ok ok 20 - bin/bp_einfo compiled ok ok 21 - bin/bp_genbank_ref_extractor compiled ok ok t/author-eol.t .............. skipped: these tests are for testing by the author t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-no-tabs.t .......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/egquery.t ................. 1..18 ok 1 - get_db ok 2 - get_database ok 3 - get_databases ok 4 - get_term ok 5 - get_count ok 6 - get_count ok 7 - get_count ok 8 - get_GlobalQueries ok 9 - get_term ok 10 - get_term ok 11 - get_term ok 12 - get_term ok 13 - get_term ok 14 - get_term ok 15 - get_term ok 16 - get_term ok 17 - get_term ok 18 - get_term ok t/einfo.t ................... 1..49 ok 1 - get_available_databases ok 2 - get_databases ok 3 - get_db ok 4 - get_record_count ok 5 - get_menu_name ok 6 - get_last_update ok 7 - get_description ok 8 - FieldInfo ok 9 - LinkInfo ok 10 - get_db ok 11 - get_dbs ok 12 - get_record_count ok 13 - get_menu_name ok 14 - get_last_update ok 15 - get_description ok 16 - FieldInfo ok 17 - get_term_count ok 18 - get_field_name ok 19 - get_field_code ok 20 - get_field_description ok 21 - is_date ok 22 - is_singletoken ok 23 - is_hierarchy ok 24 - is_hidden ok 25 - is_numerical ok 26 - get_term_count ok 27 - get_field_name ok 28 - get_field_code ok 29 - get_field_description ok 30 - is_date ok 31 - is_singletoken ok 32 - is_hierarchy ok 33 - is_hidden ok 34 - is_numerical ok 35 - LinkInfo ok 36 - get_dbto ok 37 - get_dbfrom ok 38 - get_link_name ok 39 - get_link_description ok 40 - get_priority ok 41 - get_html_tag ok 42 - get_url ok 43 - get_dbto ok 44 - get_dbfrom ok 45 - get_link_name ok 46 - get_link_description ok 47 - get_priority ok 48 - get_html_tag ok 49 - get_url ok t/elink_acheck.t ............ 1..128 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - get_ids ok 5 - uncorrelated LinkSets lump everything together ok 6 ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 8 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 66 ok 67 - get_ids ok 68 - get_ids ok 69 - correlated LinkSets separate ID data ok 70 ok 71 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 72 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok t/elink_lcheck.t ............ 1..62 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 33 ok 34 - get_ids ok 35 - correlated LinkSets separate ID data ok 36 ok 37 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok t/elink_llinks.t ............ 1..84 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 44 ok 45 - get_ids ok 46 - correlated LinkSets separate ID data ok 47 ok 48 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 49 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok t/elink_ncheck.t ............ 1..58 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 29 ok 30 - get_ids ok 31 - correlated LinkSets separate ID data ok 32 ok 33 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 34 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok t/elink_neighbor.t .......... 1..61 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 33 ok 34 - get_ids ok 35 - correlated LinkSets separate ID data ok 36 ok 37 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok t/elink_neighbor_history.t .. 1..63 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::HistoryI' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 34 ok 35 - get_ids ok 36 - correlated LinkSets separate ID data ok 37 ok 38 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 39 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 40 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::HistoryI' ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok t/elink_scores.t ............ 1..56 ok 1 - An object of class 'Bio::Tools::EUtilities::Link' isa 'Bio::Tools::EUtilities::Link' ok 2 ok 3 - get_ids ok 4 - uncorrelated LinkSets lump everything together ok 5 ok 6 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - An object of class 'Bio::Tools::EUtilities::Link::LinkSet' isa 'Bio::Tools::EUtilities::Link::LinkSet' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok t/epost.t ................... 1..15 ok 1 - An object of class 'Bio::Tools::EUtilities::Query' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 2 - An object of class 'Bio::Tools::EUtilities::Query' isa 'Bio::Tools::EUtilities::Query' ok 3 - eutil ok 4 - datatype ok 5 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::HistoryI' ok 6 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::EUtilDataI' ok 7 - eutil ok 8 - eutil ok 9 - get_webenv ok 10 - get_query_key ok 11 - history ok 12 - get_database ok 13 - get_ids ok 14 - get_database ok 15 - get_ids ok t/esearch.t ................. 1..31 ok 1 - get_count ok 2 ok 3 - get_ids ok 4 - get_retstart ok 5 - get_retmax ok 6 - get_translation_from ok 7 - get_translation_to ok 8 - get_db ok 9 - get_database ok 10 - get_term ok 11 - get_db ok 12 - get_database ok 13 - get_term ok 14 - get_corrected_query ok 15 - get_replaced_terms ok 16 - get_count ok 17 - An object of class 'Bio::Tools::EUtilities::History' isa 'Bio::Tools::EUtilities::HistoryI' ok 18 - get_webenv ok 19 - get_query_key ok 20 - history ok 21 - get_ids ok 22 - get_retstart ok 23 - get_retmax ok 24 - get_translation_from ok 25 - get_translation_to ok 26 - get_db ok 27 - get_database ok 28 - get_term ok 29 - get_corrected_query ok 30 - get_replaced_terms ok 31 - get_GlobalQueries ok t/espell.t .................. 1..20 ok 1 - get_db ok 2 - get_dbs ok 3 - get_database ok 4 - get_databases ok 5 - get_term ok 6 - get_corrected_query ok 7 - get_replaced_terms ok 8 - get_replaced_terms ok 9 - get_count ok 10 ok 11 - get_ids ok 12 - get_retstart ok 13 - get_retmax ok 14 - get_translation_from ok 15 - get_translation_to ok 16 - get_db ok 17 - get_dbs ok 18 - get_database ok 19 - get_databases ok 20 - get_term ok t/esummary.t ................ 1..81 ok 1 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 2 ok 3 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 4 ok 5 - get_ids ok 6 ok 7 - An object of class 'Bio::Tools::EUtilities::Summary::DocSum' isa 'Bio::Tools::EUtilities::Summary::DocSum' ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 51 ok 52 - An object of class 'Bio::Tools::EUtilities::Summary' isa 'Bio::Tools::EUtilities::Summary' ok 53 ok 54 - get_ids ok 55 ok 56 - An object of class 'Bio::Tools::EUtilities::Summary::DocSum' isa 'Bio::Tools::EUtilities::Summary::DocSum' ok 57 ok 58 ok 59 ok 60 ok 61 - An object of class 'Bio::Tools::EUtilities::Summary::Item' isa 'Bio::Tools::EUtilities::Summary::Item' ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok t/EUtilParameters.t ......... 1..12 ok 1 ok 2 - An object of class 'HTTP::Request' isa 'HTTP::Request' ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 - available_parameters ok 10 - available_parameters ok 11 - get_parameters ok 12 - get_parameters ok t/release-EUtilities.t ...... skipped: these tests are for release candidate testing All tests successful. Files=20, Tests=759, 3 wallclock secs ( 0.09 usr 0.01 sys + 2.36 cusr 0.37 csys = 2.83 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-eutilities-perl/ make -j2 install DESTDIR=/<>/debian/libbio-eutilities-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 2 pod documents Manifying 19 pod documents Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/EUtilities.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/DB/EUtilities.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Query.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/EUtilDataI.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/History.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/EUtilParameters.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/HistoryI.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/DocSum.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/ItemContainerI.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Summary/Item.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info/LinkInfo.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Info/FieldInfo.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link/UrlLink.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Link/LinkSet.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/perl5/Bio/Tools/EUtilities/Query/GlobalQuery.pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man1/bp_einfo.1p Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man1/bp_genbank_ref_extractor.1p Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link::UrlLink.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::ItemContainerI.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::DB::EUtilities.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::History.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Query.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link::LinkSet.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::EUtilDataI.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Query::GlobalQuery.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::DocSum.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary::Item.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info::FieldInfo.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Summary.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::EUtilities.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::HistoryI.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::EUtilParameters.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Info::LinkInfo.3pm Installing /<>/debian/libbio-eutilities-perl/usr/share/man/man3/Bio::Tools::EUtilities::Link.3pm Installing /<>/debian/libbio-eutilities-perl/usr/bin/bp_einfo Installing /<>/debian/libbio-eutilities-perl/usr/bin/bp_genbank_ref_extractor make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-eutilities-perl' in '../libbio-eutilities-perl_1.77-2_all.deb'. dpkg-genbuildinfo -O../libbio-eutilities-perl_1.77-2_amd64.buildinfo dpkg-genchanges -O../libbio-eutilities-perl_1.77-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T17:26:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-eutilities-perl_1.77-2_amd64.changes: -------------------------------------------- Format: 1.8 Date: Sun, 16 Oct 2022 03:56:15 +0100 Source: libbio-eutilities-perl Binary: libbio-eutilities-perl Architecture: source all Version: 1.77-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Perl Group Changed-By: Jelmer Vernooij Description: libbio-eutilities-perl - BioPerl interface to the Entrez Programming Utilities (E-utilitie Changes: libbio-eutilities-perl (1.77-2) unstable; urgency=medium . [ Debian Janitor ] * Bump debhelper from old 12 to 13. * Update standards version to 4.5.1, no changes needed. Checksums-Sha1: d2a82475fdd4ff2a0f8e921722585e4d29f5b454 1481 libbio-eutilities-perl_1.77-2.dsc 5478151aeb4b65524153904d3f915b3a603ba009 5364 libbio-eutilities-perl_1.77-2.debian.tar.xz 4d2d041cda881fc01b0851d81abbfac03d3b9693 118620 libbio-eutilities-perl_1.77-2_all.deb 77e8f6ed6f6b04bf6573853f7920cabfb699143d 6379 libbio-eutilities-perl_1.77-2_amd64.buildinfo Checksums-Sha256: 5271dbe6393dab92324dc342b2514c8a340dae62544ae4d6c0270cd75cab45b4 1481 libbio-eutilities-perl_1.77-2.dsc b2c25bfd4971a7f1247f4410baa02f5ae099bb2ae58fa6d72a70fe420df1b859 5364 libbio-eutilities-perl_1.77-2.debian.tar.xz a18932ad7ce49d039f4804f886e927a571359e48e17936cd4afd66b42e5c4913 118620 libbio-eutilities-perl_1.77-2_all.deb 3596a7a6defac40979b8cf2c2e9df457ce187e1fb5a814a8fac836b9fa0acb6f 6379 libbio-eutilities-perl_1.77-2_amd64.buildinfo Files: e8f0d8e50ac9a1a2b689a3050fc59a47 1481 perl optional libbio-eutilities-perl_1.77-2.dsc 28a34baaba2b06e499ff8b0bd8dfa049 5364 perl optional libbio-eutilities-perl_1.77-2.debian.tar.xz 9e7de6218bdaf51df14dc54342d0e21d 118620 perl optional libbio-eutilities-perl_1.77-2_all.deb 7f6fa74a0bb3c7003ea1a59f5f788da8 6379 perl optional libbio-eutilities-perl_1.77-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-eutilities-perl Binary: libbio-eutilities-perl Architecture: all source Version: 1.77-2 Checksums-Md5: e8f0d8e50ac9a1a2b689a3050fc59a47 1481 libbio-eutilities-perl_1.77-2.dsc 9e7de6218bdaf51df14dc54342d0e21d 118620 libbio-eutilities-perl_1.77-2_all.deb Checksums-Sha1: d2a82475fdd4ff2a0f8e921722585e4d29f5b454 1481 libbio-eutilities-perl_1.77-2.dsc 4d2d041cda881fc01b0851d81abbfac03d3b9693 118620 libbio-eutilities-perl_1.77-2_all.deb Checksums-Sha256: 5271dbe6393dab92324dc342b2514c8a340dae62544ae4d6c0270cd75cab45b4 1481 libbio-eutilities-perl_1.77-2.dsc a18932ad7ce49d039f4804f886e927a571359e48e17936cd4afd66b42e5c4913 118620 libbio-eutilities-perl_1.77-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Jun 2024 17:26:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-7), bsdutils (= 1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libbio-asn1-entrezgene-perl (= 1.730-3), libbio-cluster-perl (= 1.7.3-6), libbio-perl-perl (= 1.7.8-1), libbio-variation-perl (= 1.7.5-3), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libclone-perl (= 0.46-1+b3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libencode-locale-perl (= 1.05-3), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhtml-parser-perl (= 3.82-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.085-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsystemd0 (= 256~rc3-7), libtext-csv-perl (= 2.04-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.1-7), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-3+b1), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b3), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml-simple-perl (= 2.25-2), libxml-twig-perl (= 1:3.52-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-5), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.2.1-3), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1665888975" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-eutilities-perl_1.77-2_all.deb ------------------------------------- new Debian package, version 2.0. size 118620 bytes: control archive=2184 bytes. 1390 bytes, 25 lines control 3898 bytes, 45 lines md5sums Package: libbio-eutilities-perl Version: 1.77-2 Architecture: all Maintainer: Debian Perl Group Installed-Size: 372 Depends: perl:any, libbio-asn1-entrezgene-perl, libbio-perl-perl, libhttp-message-perl, libtext-csv-perl, liburi-perl, libwww-perl, libxml-simple-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-EUtilities Description: BioPerl interface to the Entrez Programming Utilities (E-utilities) The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. This package provides a programmatic interface to NCBI's Entrez Programming Utilities commonly referred to as E-utilities. Namely, it provides the Bio::DB::EUtilities and Bio::Tools::EUtilities perl modules. . Entrez is a federated search engine at the National Center for Biotechnology Information (NCBI) for a large number of databases covering a variety of biomedical data, including nucleotide and protein sequences, gene records, three-dimensional molecular structures, and the biomedical literature. E-utilities are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI). drwxr-xr-x root/root 0 2022-10-16 02:56 ./ drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/ drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/bin/ -rwxr-xr-x root/root 4539 2022-10-16 02:56 ./usr/bin/bp_einfo -rwxr-xr-x root/root 48493 2022-10-16 02:56 ./usr/bin/bp_genbank_ref_extractor drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/ drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/doc/libbio-eutilities-perl/ -rw-r--r-- root/root 715 2022-10-16 02:56 ./usr/share/doc/libbio-eutilities-perl/changelog.Debian.gz -rw-r--r-- root/root 882 2020-03-09 18:58 ./usr/share/doc/libbio-eutilities-perl/changelog.gz -rw-r--r-- root/root 1064 2022-10-16 02:56 ./usr/share/doc/libbio-eutilities-perl/copyright drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/man/man1/ -rw-r--r-- root/root 2106 2022-10-16 02:56 ./usr/share/man/man1/bp_einfo.1p.gz -rw-r--r-- root/root 4893 2022-10-16 02:56 ./usr/share/man/man1/bp_genbank_ref_extractor.1p.gz drwxr-xr-x root/root 0 2022-10-16 02:56 ./usr/share/man/man3/ -rw-r--r-- root/root 8950 2022-10-16 02:56 ./usr/share/man/man3/Bio::DB::EUtilities.3pm.gz -rw-r--r-- root/root 1776 2022-10-16 02:56 ./usr/share/man/man3/Bio::EUtilities.3pm.gz -rw-r--r-- root/root 7890 2022-10-16 02:56 ./usr/share/man/man3/Bio::Tools::EUtilities.3pm.gz -rw-r--r-- root/root 2964 2022-10-16 02:56 ./usr/share/man/man3/Bio::Tools::EUtilities::EUtilDataI.3pm.gz -rw-r--r-- root/root 4571 2022-10-16 02:56 ./usr/share/man/man3/Bio::Tools::EUtilities::EUtilParameters.3pm.gz -rw-r--r-- root/root 2348 2022-10-16 02:56 ./usr/share/man/man3/Bio::Tools::EUtilities::History.3pm.gz -rw-r--r-- root/root 2220 2022-10-16 02:56 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 2380 Build-Time: 6 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/libbio-eutilities-perl_1.77-2.dsc Machine Architecture: amd64 Package: libbio-eutilities-perl Package-Time: 20 Source-Version: 1.77-2 Space: 2380 Status: successful Version: 1.77-2 -------------------------------------------------------------------------------- Finished at 2024-06-03T17:26:02Z Build needed 00:00:20, 2380k disk space