sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-db-seqfeature-perl 1.7.4-2 (amd64) Tue, 06 Aug 2024 13:07:52 +0000 | +==============================================================================+ Package: libbio-db-seqfeature-perl Version: 1.7.4-2 Source Version: 1.7.4-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-7b479008-118f-4ab9-8514-4b9b55a33932' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-seqfeature-perl_1.7.4-2 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-seqfeature-perl_1.7.4-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-db-seqfeature-perl-A0Hbqy/resolver-7Z1IMV' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-db-seqfeature-perl_1.7.4-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-db-seqfeature-perl-A0Hbqy/libbio-db-seqfeature-perl-1.7.4' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-db-seqfeature-perl-A0Hbqy' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [750 B] Get:5 copy:/<>/apt_archive ./ Packages [762 B] Fetched 2121 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: apache2-bin autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libarchive-zip-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-perl-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libcom-err2 libcurl4t64 libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl libdevel-symdump-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libpipeline1 libpq5 libpsl5t64 librtmp1 libssh2-1t64 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils Suggested packages: apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl libapache2-reload-perl libbsd-resource-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-mysql-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libcgi-fast-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl krb5-locales publicsuffix libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: apache2-bin autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libarchive-zip-perl libbio-db-biofetch-perl libbio-db-gff-perl libbio-perl-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libcom-err2 libcurl4t64 libdata-stag-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl libdevel-symdump-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libgssapi-krb5-2 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libpipeline1 libpq5 libpsl5t64 librtmp1 libssh2-1t64 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 29.8 MB/32.5 MB of archives. After this operation, 114 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.1-2 [1380 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b1 [99.7 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB] Get:7 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:15 file:/srv/reprepro perl-5.40/main amd64 libapache2-mod-perl2 amd64 2.0.13-1+b4 [810 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-4 [96.6 kB] Get:17 file:/srv/reprepro perl-5.40/main amd64 libdbi-perl amd64 1.643-4+b3 [755 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:20 file:/srv/reprepro perl-5.40/main amd64 libpq5 amd64 16.3-1+b2 [218 kB] Get:21 file:/srv/reprepro perl-5.40/main amd64 libdbd-pg-perl amd64 3.18.0-1+b3 [210 kB] Get:22 file:/srv/reprepro perl-5.40/main amd64 libdbd-sqlite3-perl amd64 1.74-1+b3 [176 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libapr1t64 amd64 1.7.2-3.2 [102 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libaprutil1t64 amd64 1.6.3-3 [89.3 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-3 [13.9 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libaprutil1-ldap amd64 1.6.3-3 [12.1 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b4 [300 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:33 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.62.1-2 [74.9 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-7 [216 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.9.1-1 [463 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b1 [147 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 apache2-bin amd64 2.4.62-1 [1387 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:55 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:78 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.088-1 [222 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libcgi-pm-perl all 4.66-1 [217 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libbio-db-gff-perl all 1.7.4-1 [273 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:93 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.8 MB in 0s (80.7 MB/s) Selecting previously unselected package netbase. (Reading database ... 22925 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.1-2_amd64.deb ... Unpacking openssl (3.3.1-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Selecting previously unselected package libtest-most-perl. Preparing to unpack .../099-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../100-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-4) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libbrotli1:amd64 (1.1.0-2+b4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1) ... Setting up libnghttp2-14:amd64 (1.62.1-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libapr1t64:amd64 (1.7.2-3.2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up liblua5.4-0:amd64 (5.4.6-3+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libdevel-symdump-perl (2.18-5) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libssh2-1t64:amd64 (1.11.0-7) ... Setting up openssl (3.3.1-2) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up libdbi-perl:amd64 (1.643-4+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libaprutil1t64:amd64 (1.6.3-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libaprutil1-ldap:amd64 (1.6.3-3) ... Setting up libaprutil1-dbd-sqlite3:amd64 (1.6.3-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b1) ... Setting up libdbd-sqlite3-perl:amd64 (1.74-1+b3) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libcurl4t64:amd64 (8.9.1-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.66-1) ... Setting up libpq5:amd64 (16.3-1+b2) ... Setting up libdbd-pg-perl (3.18.0-1+b3) ... Setting up apache2-bin (2.4.62-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libapache2-mod-perl2 (2.0.13-1+b4) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libapache-dbi-perl (1.12-3) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43-1 dpkg-dev_1.22.11 g++-13_13.3.0-5 g++-14_14.2.0-1 gcc-13_13.3.0-5 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-5 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.10.3-1 Package versions: adduser_3.137 apache2-bin_2.4.62-1 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.43-1 binutils-common_2.43-1 binutils-x86-64-linux-gnu_2.43-1 bsdextrautils_2.40.2-4 bsdutils_1:2.40.2-4 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-5 cpp-13-x86-64-linux-gnu_13.3.0-5 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-5 g++-13-x86-64-linux-gnu_13.3.0-5 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-5 gcc-13-base_13.3.0-5 gcc-13-x86-64-linux-gnu_13.3.0-5 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapache-dbi-perl_1.12-3 libapache2-mod-perl2_2.0.13-1+b4 libapr1t64_1.7.2-3.2 libaprutil1-dbd-sqlite3_1.6.3-3 libaprutil1-ldap_1.6.3-3 libaprutil1t64_1.6.3-3 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.43-1 libbio-db-biofetch-perl_1.7.3-4 libbio-db-gff-perl_1.7.4-1 libbio-perl-perl_1.7.8-1 libblkid1_2.40.2-4 libbrotli1_1.1.0-2+b4 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.2.0-1 libcgi-pm-perl_4.66-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b3 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.43-1 libctf0_2.43-1 libcurl4t64_8.9.1-1 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdbd-pg-perl_3.18.0-1+b3 libdbd-sqlite3-perl_1.74-1+b3 libdbi-perl_1.643-4+b3 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdevel-stacktrace-perl_2.0500-1 libdevel-symdump-perl_2.18-5 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.2-1 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-5 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.43-1 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1 libhtml-parser-perl_3.83-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.088-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblua5.4-0_5.4.6-3+b1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-4 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.10-1 libnghttp2-14_1.62.1-2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 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libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.2-4 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.3-1 locales-all_2.39-6 login_1:4.16.0-2+really2.40.2-4 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.1-2 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-4 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-db-seqfeature-perl Binary: libbio-db-seqfeature-perl Architecture: all Version: 1.7.4-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-DB-SeqFeature Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl, perl, libtest-most-perl Package-List: libbio-db-seqfeature-perl deb perl optional arch=all Checksums-Sha1: b383bf7a3ef3d08126fb21c9daa77f0b25501da9 258495 libbio-db-seqfeature-perl_1.7.4.orig.tar.gz 6f11630c55f98cbc17869fafbbcc245877af48c9 2212 libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz Checksums-Sha256: f2304f95fb77a12732b1883817525609e54fa70b2638ed2de0696d503407fe91 258495 libbio-db-seqfeature-perl_1.7.4.orig.tar.gz 6a09c2359eb0cec0e5e8028ddf8c6eb7a75f0cebd37234039cbd4ed534d4d17c 2212 libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz Files: 05a289d46d45f8d3932a4a3f8ed16f6b 258495 libbio-db-seqfeature-perl_1.7.4.orig.tar.gz d6e8763609acfe0e12c475d927bf7e1d 2212 libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPUGjQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHR3w//STP96el6RrsXbMfZfcA9yNtiDVLc4R74 84imTlsJ0rPmbNKyB159o+nuVm5C6mcq+KfJKcrCHxaqcZ/xAjGmX2yDP9jYNOYK 63G+eQ6VqDcM+MMhkT/KXm/oVNTB/NDDoKlVB8BW4/wWD4LudpoqdpySRSH2mAFE 4mVQGQTqxvYap3oYdqnL2zY4qWCJhSpEBm4mE3tRpS3q4/b7r+OLbnK/eOUo36zt CaFfMx8SL3B3968ANQpLiAP7d2rhego5GYuMdTu0ouvgPEUJ443E3aW1A/3C0fl0 irvz4kyfL8s3yKvWDshr0543LZ7wcWltY3NizUV9WdZXFkA+T1AKW1sTbayP4sXH 347zHCUhPC4VlnjWCB2ACQbO8UXSJDCxgGnhqq2F4oJNoyuwujqZlvAmsIv+Lqlm JCs+bxPbGEPIs+5cjQ5iOUmcGZQx92rQkc1nEwFda1Aw1EqRdbv8R5gseotlc7BQ rR39ae95e5zecP4TNdAKY5dp5/gfSEhhT/t0ZpWhSC63WGTGKYv+PvYut/RrFLJ4 iaUfTT+9m9+8tk1fkUmCOnwSCG7Fp1pyxJBDt9R+hTqNP5YWxdL1wk+0FQRo8Tcz qXx6Ti21ifVntQglSv8AO611y+1PxfICJlnTBUcqVrY8VqQwvhIhVB1DpltoFUBX k9H+B9sV2Tk= =xs1V -----END PGP SIGNATURE----- gpgv: Signature made Fri Jan 27 18:38:44 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-seqfeature-perl_1.7.4-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-seqfeature-perl in /<> dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-seqfeature-perl_1.7.4-2 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-seqfeature-perl_1.7.4-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-7b479008-118f-4ab9-8514-4b9b55a33932 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-db-seqfeature-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-db-seqfeature-perl using existing ./libbio-db-seqfeature-perl_1.7.4.orig.tar.gz dpkg-source: info: building libbio-db-seqfeature-perl in libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz dpkg-source: info: building libbio-db-seqfeature-perl in libbio-db-seqfeature-perl_1.7.4-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::SeqFeature Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb.pm cp lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm cp lib/Bio/DB/SeqFeature/NormalizedFeature.pm blib/lib/Bio/DB/SeqFeature/NormalizedFeature.pm cp lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm cp lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm blib/lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm cp lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm blib/lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm cp lib/Bio/DB/SeqFeature/Store/bdb.pm blib/lib/Bio/DB/SeqFeature/Store/bdb.pm cp lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm blib/lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm cp lib/Bio/DB/SeqFeature/Store/memory.pm blib/lib/Bio/DB/SeqFeature/Store/memory.pm cp lib/Bio/DB/SeqFeature/Store.pm blib/lib/Bio/DB/SeqFeature/Store.pm cp lib/Bio/DB/SeqFeature/Store/LoadHelper.pm blib/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm cp lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm cp lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm blib/lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm cp lib/Bio/DB/SeqFeature.pm blib/lib/Bio/DB/SeqFeature.pm cp lib/Bio/DB/SeqFeature/Segment.pm blib/lib/Bio/DB/SeqFeature/Segment.pm cp lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm blib/lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm cp lib/Bio/DB/SeqFeature/Store/Loader.pm blib/lib/Bio/DB/SeqFeature/Store/Loader.pm cp bin/bp_seqfeature_delete blib/script/bp_seqfeature_delete "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_delete cp bin/bp_seqfeature_gff3 blib/script/bp_seqfeature_gff3 "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_gff3 cp bin/bp_seqfeature_load blib/script/bp_seqfeature_load "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqfeature_load Manifying 1 pod document Manifying 19 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..20 ok 1 - Bio/DB/SeqFeature.pm loaded ok ok 2 - Bio/DB/SeqFeature/NormalizedFeature.pm loaded ok ok 3 - Bio/DB/SeqFeature/NormalizedFeatureI.pm loaded ok ok 4 - Bio/DB/SeqFeature/NormalizedTableFeatureI.pm loaded ok ok 5 - Bio/DB/SeqFeature/Segment.pm loaded ok ok 6 - Bio/DB/SeqFeature/Store.pm loaded ok ok 7 - Bio/DB/SeqFeature/Store/DBI/Iterator.pm loaded ok ok 8 - Bio/DB/SeqFeature/Store/DBI/mysql.pm loaded ok ok 9 - Bio/DB/SeqFeature/Store/FeatureFileLoader.pm loaded ok ok 10 - Bio/DB/SeqFeature/Store/GFF2Loader.pm loaded ok ok 11 - Bio/DB/SeqFeature/Store/GFF3Loader.pm loaded ok ok 12 - Bio/DB/SeqFeature/Store/LoadHelper.pm loaded ok ok 13 - Bio/DB/SeqFeature/Store/Loader.pm loaded ok ok 14 - Bio/DB/SeqFeature/Store/bdb.pm loaded ok ok 15 - Bio/DB/SeqFeature/Store/berkeleydb.pm loaded ok ok 16 - Bio/DB/SeqFeature/Store/berkeleydb3.pm loaded ok ok 17 - Bio/DB/SeqFeature/Store/memory.pm loaded ok ok 18 - bin/bp_seqfeature_delete compiled ok ok 19 - bin/bp_seqfeature_gff3 compiled ok ok 20 - bin/bp_seqfeature_load compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/SeqFeature.t ......... 1..116 ok 1 - use Bio::SeqFeature::Generic; ok 2 - use Bio::DB::SeqFeature::Store; ok 3 - use Bio::DB::SeqFeature::Store::GFF3Loader; ok 4 - use Bio::Root::IO; ok 5 - use Bio::DB::Fasta; ok 6 - use File::Copy; ok 7 ok 8 ok 9 ok 10 - adding a feature ok 11 ok 12 ok 13 ok 14 - adding a feature with no primary_id ok 15 ok 16 - searching for a feature that shouldnt exist ok 17 - simple type ok 18 - base type with colon ok 19 - base type alone ok 20 - queried types are not interpolated ok 21 ok 22 ok 23 - An object of class 'Bio::DB::GFF::Typename' isa 'Bio::DB::GFF::Typename' ok 24 - feature deletion ok 25 ok 26 ok 27 - adding subfeatures ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 - feature names should be case insensitive ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 - base type ok 65 - base:source type ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 - An object of class 'Bio::Location::Split' isa 'Bio::Location::Split' ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 - keyword search; 1 term ok 103 - keyword search; 2 terms ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 112 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 113 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 114 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 115 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok 116 # skip Namespaces only supported for DBI::mysql and DBI::Pg adaptors ok All tests successful. Files=4, Tests=136, 2 wallclock secs ( 0.03 usr 0.00 sys + 1.15 cusr 0.28 csys = 1.46 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-seqfeature-perl/ make -j2 install DESTDIR=/<>/debian/libbio-db-seqfeature-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 1 pod document Manifying 19 pod documents Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeatureI.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Segment.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/NormalizedFeature.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF3Loader.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/LoadHelper.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/berkeleydb3.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/memory.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/Loader.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/GFF2Loader.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/bdb.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/SQLite.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Pg.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/perl5/Bio/DB/SeqFeature/Store/DBI/Iterator.pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man1/bp_seqfeature_load.1p Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF3Loader.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Segment.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb3.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::LoadHelper.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::mysql.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::berkeleydb.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Pg.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::memory.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::bdb.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::Iterator.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::DBI::SQLite.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeature.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::FeatureFileLoader.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::Loader.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedTableFeatureI.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::NormalizedFeatureI.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/share/man/man3/Bio::DB::SeqFeature::Store::GFF2Loader.3pm Installing /<>/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_load Installing /<>/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_gff3 Installing /<>/debian/libbio-db-seqfeature-perl/usr/bin/bp_seqfeature_delete make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-seqfeature-perl' in '../libbio-db-seqfeature-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo -O../libbio-db-seqfeature-perl_1.7.4-2_amd64.buildinfo dpkg-genchanges -O../libbio-db-seqfeature-perl_1.7.4-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-06T13:08:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-db-seqfeature-perl_1.7.4-2_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Fri, 27 Jan 2023 19:25:14 +0100 Source: libbio-db-seqfeature-perl Binary: libbio-db-seqfeature-perl Architecture: source all Version: 1.7.4-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-db-seqfeature-perl - Normalized feature for use with Bio::DB::SeqFeature::Store Changes: libbio-db-seqfeature-perl (1.7.4-2) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Team maintenance in Debian Med team * Set upstream metadata fields: Repository. * Remove redundant field Homepage from upstream metadata * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database. * watch file standard 4 (routine-update) . [ Jelmer Vernooij ] * Fix Vcs-Git field. Checksums-Sha1: 5f7a0741561c10ef42fca4418f7977ab770ea01d 1394 libbio-db-seqfeature-perl_1.7.4-2.dsc 6f11630c55f98cbc17869fafbbcc245877af48c9 2212 libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz bd55f4d8de1ab9c3ee1cb6271e1f2fb6a896b1da 162996 libbio-db-seqfeature-perl_1.7.4-2_all.deb bad9cf7d16d217b2652927c35fc9162dcf2b44ba 7619 libbio-db-seqfeature-perl_1.7.4-2_amd64.buildinfo Checksums-Sha256: 8ddb413d06dd0cb346f9ac45455a89e38bed98da8b620a5899e4eb6b2a114326 1394 libbio-db-seqfeature-perl_1.7.4-2.dsc 6a09c2359eb0cec0e5e8028ddf8c6eb7a75f0cebd37234039cbd4ed534d4d17c 2212 libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz 121c9fb74e352f28fa217d5a811ed7ad273b0d9987ab977cd4ebe3fec7242154 162996 libbio-db-seqfeature-perl_1.7.4-2_all.deb a86b8e851871c72e31800815482ede6ea39bde89be9550a189cdb11ef69d2264 7619 libbio-db-seqfeature-perl_1.7.4-2_amd64.buildinfo Files: 89496893a2e45841c4fc1d25255d0932 1394 perl optional libbio-db-seqfeature-perl_1.7.4-2.dsc d6e8763609acfe0e12c475d927bf7e1d 2212 perl optional libbio-db-seqfeature-perl_1.7.4-2.debian.tar.xz fff6c3759eb60b17e989845ff5e269bf 162996 perl optional libbio-db-seqfeature-perl_1.7.4-2_all.deb 08a55c0c382d711dd9aa398729fedd18 7619 perl optional libbio-db-seqfeature-perl_1.7.4-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-db-seqfeature-perl Binary: libbio-db-seqfeature-perl Architecture: all source Version: 1.7.4-2 Checksums-Md5: 89496893a2e45841c4fc1d25255d0932 1394 libbio-db-seqfeature-perl_1.7.4-2.dsc fff6c3759eb60b17e989845ff5e269bf 162996 libbio-db-seqfeature-perl_1.7.4-2_all.deb Checksums-Sha1: 5f7a0741561c10ef42fca4418f7977ab770ea01d 1394 libbio-db-seqfeature-perl_1.7.4-2.dsc bd55f4d8de1ab9c3ee1cb6271e1f2fb6a896b1da 162996 libbio-db-seqfeature-perl_1.7.4-2_all.deb Checksums-Sha256: 8ddb413d06dd0cb346f9ac45455a89e38bed98da8b620a5899e4eb6b2a114326 1394 libbio-db-seqfeature-perl_1.7.4-2.dsc 121c9fb74e352f28fa217d5a811ed7ad273b0d9987ab977cd4ebe3fec7242154 162996 libbio-db-seqfeature-perl_1.7.4-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 06 Aug 2024 13:08:14 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: apache2-bin (= 2.4.62-1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.43-1), binutils-common (= 2.43-1), binutils-x86-64-linux-gnu (= 2.43-1), bsdextrautils (= 2.40.2-4), bsdutils (= 1:2.40.2-4), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-5), cpp-13-x86-64-linux-gnu (= 13.3.0-5), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-5), gcc-13-base (= 13.3.0-5), gcc-13-x86-64-linux-gnu (= 13.3.0-5), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libapache-dbi-perl (= 1.12-3), libapache2-mod-perl2 (= 2.0.13-1+b4), libapr1t64 (= 1.7.2-3.2), libaprutil1-dbd-sqlite3 (= 1.6.3-3), libaprutil1-ldap (= 1.6.3-3), libaprutil1t64 (= 1.6.3-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.43-1), libbio-db-biofetch-perl (= 1.7.3-4), libbio-db-gff-perl (= 1.7.4-1), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.2-4), libbrotli1 (= 1.1.0-2+b4), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.2.0-1), libcgi-pm-perl (= 4.66-1), libclass-data-inheritable-perl (= 0.08-3), libclone-perl (= 0.46-1+b3), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.43-1), libctf0 (= 2.43-1), libcurl4t64 (= 8.9.1-1), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdbd-pg-perl (= 3.18.0-1+b3), libdbd-sqlite3-perl (= 1.74-1+b3), libdbi-perl (= 1.643-4+b3), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdevel-stacktrace-perl (= 2.0500-1), libdevel-symdump-perl (= 2.18-5), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-5), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.6-2), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.43-1), libgssapi-krb5-2 (= 1.21.3-3), libhogweed6t64 (= 3.10-1), libhtml-parser-perl (= 3.83-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libidn2-0 (= 2.3.7-2), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.088-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), libldap-2.5-0 (= 2.5.18+dfsg-2+b1), liblsan0 (= 14.2.0-1), liblua5.4-0 (= 5.4.6-3+b1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-4), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libnettle8t64 (= 3.10-1), libnghttp2-14 (= 1.62.1-2), libp11-kit0 (= 0.25.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libpq5 (= 16.3-1+b2), libpsl5t64 (= 0.21.2-1.1), libquadmath0 (= 14.2.0-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4), libsasl2-2 (= 2.1.28+dfsg1-6), libsasl2-modules-db (= 2.1.28+dfsg1-6), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.43-1), libsmartcols1 (= 2.40.2-4), libsqlite3-0 (= 3.46.0-1), libssh2-1t64 (= 1.11.0-7), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256.4-2), libtasn1-6 (= 4.19.0-3+b2), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.2-4), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.3-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.3.1-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-4), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1674843914" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-db-seqfeature-perl_1.7.4-2_all.deb ----------------------------------------- new Debian package, version 2.0. size 162996 bytes: control archive=2032 bytes. 1185 bytes, 23 lines control 4004 bytes, 45 lines md5sums Package: libbio-db-seqfeature-perl Version: 1.7.4-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 570 Depends: perl:any, libbio-perl-perl, libbio-db-gff-perl, libdbd-pg-perl, libdbd-sqlite3-perl, libdbi-perl Breaks: libbio-perl-perl (<< 1.7.3) Replaces: libbio-perl-perl (<< 1.7.3) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-DB-SeqFeature Description: Normalized feature for use with Bio::DB::SeqFeature::Store The Bio::DB::SeqFeature object is the default SeqFeature class stored in Bio::DB::SeqFeature databases. It implements both the Bio::DB::SeqFeature::NormalizedFeatureI and Bio::DB::SeqFeature::NormalizedTableFeatureI interfaces, which means that its subfeatures, if any, are stored in the database in a normalized fashion, and that the parent/child hierarchy of features and subfeatures are also stored in the database as set of tuples. This provides efficiencies in both storage and retrieval speed. . Typically you will not create Bio::DB::SeqFeature directly, but will ask the database to do so on your behalf, as described in Bio::DB::SeqFeature::Store. drwxr-xr-x root/root 0 2023-01-27 18:25 ./ drwxr-xr-x root/root 0 2023-01-27 18:25 ./usr/ drwxr-xr-x root/root 0 2023-01-27 18:25 ./usr/bin/ -rwxr-xr-x root/root 4665 2023-01-27 18:25 ./usr/bin/bp_seqfeature_delete -rwxr-xr-x root/root 2396 2023-01-27 18:25 ./usr/bin/bp_seqfeature_gff3 -rwxr-xr-x root/root 7264 2023-01-27 18:25 ./usr/bin/bp_seqfeature_load drwxr-xr-x root/root 0 2023-01-27 18:25 ./usr/share/ drwxr-xr-x root/root 0 2023-01-27 18:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-01-27 18:25 ./usr/share/doc/libbio-db-seqfeature-perl/ -rw-r--r-- root/root 565 2023-01-27 18:25 ./usr/share/doc/libbio-db-seqfeature-perl/changelog.Debian.gz -rw-r--r-- root/root 340 2020-01-09 04:03 ./usr/share/doc/libbio-db-seqfeature-perl/changelog.gz -rw-r--r-- root/root 1234 2023-01-27 18:25 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Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 2916 Build-Time: 6 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 10 Job: /srv/debomatic/incoming/libbio-db-seqfeature-perl_1.7.4-2.dsc Machine Architecture: amd64 Package: libbio-db-seqfeature-perl Package-Time: 23 Source-Version: 1.7.4-2 Space: 2916 Status: successful Version: 1.7.4-2 -------------------------------------------------------------------------------- Finished at 2024-08-06T13:08:15Z Build needed 00:00:23, 2916k disk space