sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-db-ncbihelper-perl 1.7.8-1 (amd64) Mon, 03 Jun 2024 17:24:22 +0000 | +==============================================================================+ Package: libbio-db-ncbihelper-perl Version: 1.7.8-1 Source Version: 1.7.8-1 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-2b7bc045-037e-4ded-b83b-ffb036257636' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-ncbihelper-perl_1.7.8-1 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-ncbihelper-perl_1.7.8-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-db-ncbihelper-perl-IGIXpP/resolver-KXe68m' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 http://localhost:3142/debian unstable InRelease [198 kB] Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:4 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Fetched 571 kB in 2s (259 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: login passwd 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1564 kB of archives. After this operation, 57.3 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB] Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1564 kB in 0s (73.5 MB/s) (Reading database ... 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Setting up passwd (1:4.13+dfsg1-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-db-ncbihelper-perl_1.7.8-1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-db-ncbihelper-perl-IGIXpP/libbio-db-ncbihelper-perl-1.7.8' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-db-ncbihelper-perl-IGIXpP' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-asn1-entrezgene-perl, libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-perl-perl, libbio-asn1-entrezgene-perl, libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [867 B] Get:5 copy:/<>/apt_archive ./ Packages [879 B] Fetched 2355 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libcache-cache-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl liberror-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl libcgi-fast-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libcache-cache-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl liberror-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils ucf 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 26.0 MB/26.7 MB of archives. After this operation, 95.2 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.82-1+b1 [99.2 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B] Get:3 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB] Get:4 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:8 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [199 kB] Get:9 file:/srv/reprepro perl-5.40/main amd64 libipc-sharelite-perl amd64 0.17-5+b3 [23.1 kB] Get:10 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:12 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unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:47 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:59 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:60 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:62 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get:74 http://localhost:3142/debian unstable/main amd64 liberror-perl all 0.17029-2 [29.0 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.64-1 [217 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:79 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.0 MB in 0s (120 MB/s) Selecting previously unselected package netbase. (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Selecting previously unselected package liberror-perl. Preparing to unpack .../71-liberror-perl_0.17029-2_all.deb ... Unpacking liberror-perl (0.17029-2) ... Selecting previously unselected package libipc-sharelite-perl. Preparing to unpack .../72-libipc-sharelite-perl_0.17-5+b3_amd64.deb ... Unpacking libipc-sharelite-perl (0.17-5+b3) ... Selecting previously unselected package libcache-cache-perl. Preparing to unpack .../73-libcache-cache-perl_1.08-3_all.deb ... Unpacking libcache-cache-perl (1.08-3) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../74-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../75-libcgi-pm-perl_4.64-1_all.deb ... Unpacking libcgi-pm-perl (4.64-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../76-libclass-data-inheritable-perl_0.08-3_all.deb ... 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libipc-sharelite-perl (0.17-5+b3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up liberror-perl (0.17029-2) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.2.1-3) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libcache-cache-perl (1.08-3) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:amd64 (3.82-1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.15.3) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-asn1-entrezgene-perl_1.730-3 libbio-cluster-perl_1.7.3-6 libbio-perl-perl_1.7.8-1 libbio-variation-perl_1.7.5-3 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcache-cache-perl_1.08-3 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.1.0-1 libcgi-pm-perl_4.64-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.6 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perl-modules-5.40_5.40.0~rc1-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-db-ncbihelper-perl Binary: libbio-db-ncbihelper-perl Architecture: all Version: 1.7.8-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Étienne Mollier Homepage: https://metacpan.org/release/Bio-DB-NCBIHelper Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-db-ncbihelper-perl.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, pkg-perl-autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libbio-asn1-entrezgene-perl, libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, libtest-exception-perl, libtest-most-perl, libtest-requiresinternet-perl, liburi-perl, libwww-perl, libxml-twig-perl, perl Package-List: libbio-db-ncbihelper-perl deb perl optional arch=all Checksums-Sha1: fd263a4beed6ed77aba3f3d9140ff6bc2828f84c 45770 libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz 25bcf9c5e538be7fa4f07a996df1de91e5d28edd 3256 libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz Checksums-Sha256: f8e2a739c872608a24003a642a686b6e9c72af59a3bc0aceea6e5a5c2ea5ecbf 45770 libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz 9dd469bf301d104aa65edd69d7bacf54b7da1b4fbbbb9768d7272308242e0924 3256 libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz Files: 6c23bce7c78b806bfcce14efc3079077 45770 libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz 60a1a18e61cbb5af198d818d4eb7cf59 3256 libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz Dgit: 85eabed006ac3c830e07f83dd7b41b1cebed299a debian archive/debian/1.7.8-1 https://git.dgit.debian.org/libbio-db-ncbihelper-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV/GvwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoypxAAqgtzqUgL5oaxJNA3wrcz2p5YTlcN uAcTuCzNSXAJWVM91+Atkydc4VukSIYCA+hvLo4Tqn9RkjwygfQBYUjr+qzoRGs5 rL7MTR3GRx/LEorLK/MzzI7bGHfHIJCqgWfru8mtpxc/JpJES/L3hD51F5qpBZty 4g8mp8wZqQMt+yA+U38sFBLaDFej+sUjiEyhiinHwiyWNIoFc1iI7Ww24JTNEPMg hadvSCD8nBZ/jigBwnSJ/mth34PSN8GdNiY2uxLJh7ZdUd1kvOo2sSCwn2n6wCxI 3Tc3v4yfkL2u1givLId8qkV7AK1trmy3y7fHyaoCeU6sxZJEEanJqmnsalUEsacT wbcQwSPIfKUSRqXlzjhsjdHfUpXsDDamKPYcOsN0d+x1QphDrzP0ExKTHdhB2pqF uhFWQhDurkXRxYyvq61a2WR2iIrQUDv7YxjzfwLZosh+ZotFosxnoeiU5HMzw5/H W8vmgitn4nMSKfY0HiCo0qGel9SbSR6XeCofzQmpleplrEYbixEaGeBCtRwGTLrl GWD0z3QEf6xMZaKWr9FEPSJZ2WkEuFFTFNDZceGQUQeTAA2riw0hDbSwnj+QXG5x wOFTaVo6IEdYWUuh0/hO3o0OBkbSO0UI5bQda8yo+2R+AjHKauwJ4rR2djUcvFSD 3zrAu/HeWQu/Olo= =N2JW -----END PGP SIGNATURE----- gpgv: Signature made Sun Dec 17 15:59:56 2023 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-db-ncbihelper-perl_1.7.8-1.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-ncbihelper-perl in /<> dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz dpkg-source: info: unpacking libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_tests Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-ncbihelper-perl_1.7.8-1 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-ncbihelper-perl_1.7.8-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-2b7bc045-037e-4ded-b83b-ffb036257636 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-db-ncbihelper-perl dpkg-buildpackage: info: source version 1.7.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-db-ncbihelper-perl using existing ./libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-db-ncbihelper-perl in libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz dpkg-source: info: building libbio-db-ncbihelper-perl in libbio-db-ncbihelper-perl_1.7.8-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::NCBIHelper Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/<>' dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/DB/Taxonomy/entrez.pm blib/lib/Bio/DB/Taxonomy/entrez.pm cp lib/Bio/DB/GenBank.pm blib/lib/Bio/DB/GenBank.pm cp lib/Bio/DB/EntrezGene.pm blib/lib/Bio/DB/EntrezGene.pm cp lib/Bio/DB/Query/GenBank.pm blib/lib/Bio/DB/Query/GenBank.pm cp lib/Bio/DB/NCBIHelper.pm blib/lib/Bio/DB/NCBIHelper.pm cp lib/Bio/DB/GenPept.pm blib/lib/Bio/DB/GenPept.pm cp bin/bp_biofetch_genbank_proxy blib/script/bp_biofetch_genbank_proxy cp bin/bp_download_query_genbank blib/script/bp_download_query_genbank "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biofetch_genbank_proxy "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_download_query_genbank cp bin/bp_query_entrez_taxa blib/script/bp_query_entrez_taxa "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_query_entrez_taxa Manifying 3 pod documents Manifying 6 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..9 ok 1 - Bio/DB/EntrezGene.pm loaded ok ok 2 - Bio/DB/GenBank.pm loaded ok ok 3 - Bio/DB/GenPept.pm loaded ok ok 4 - Bio/DB/NCBIHelper.pm loaded ok ok 5 - Bio/DB/Query/GenBank.pm loaded ok ok 6 - Bio/DB/Taxonomy/entrez.pm loaded ok ok 7 - bin/bp_biofetch_genbank_proxy compiled ok ok 8 - bin/bp_download_query_genbank compiled ok ok 9 - bin/bp_query_entrez_taxa compiled ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/EntrezGene.t ......... skipped: NO_NETWORK_TESTING t/GenBank.t ............ skipped: NO_NETWORK_TESTING t/GenPept.t ............ skipped: NO_NETWORK_TESTING t/Query-Genbank.t ...... skipped: NO_NETWORK_TESTING t/RefSeq.t ............. skipped: NO_NETWORK_TESTING t/Taxonomy.t ........... skipped: NO_NETWORK_TESTING All tests successful. Files=9, Tests=9, 0 wallclock secs ( 0.02 usr 0.01 sys + 0.74 cusr 0.14 csys = 0.91 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-ncbihelper-perl/ make -j2 install DESTDIR=/<>/debian/libbio-db-ncbihelper-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 3 pod documents Manifying 6 pod documents Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/NCBIHelper.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenBank.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/EntrezGene.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/GenPept.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Taxonomy/entrez.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/perl5/Bio/DB/Query/GenBank.pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_query_entrez_taxa.1p Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_biofetch_genbank_proxy.1p Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man1/bp_download_query_genbank.1p Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::NCBIHelper.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenPept.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::GenBank.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Query::GenBank.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::EntrezGene.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm Installing /<>/debian/libbio-db-ncbihelper-perl/usr/bin/bp_query_entrez_taxa Installing /<>/debian/libbio-db-ncbihelper-perl/usr/bin/bp_download_query_genbank Installing /<>/debian/libbio-db-ncbihelper-perl/usr/bin/bp_biofetch_genbank_proxy make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-ncbihelper-perl' in '../libbio-db-ncbihelper-perl_1.7.8-1_all.deb'. dpkg-genbuildinfo -O../libbio-db-ncbihelper-perl_1.7.8-1_amd64.buildinfo dpkg-genchanges -O../libbio-db-ncbihelper-perl_1.7.8-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T17:24:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-db-ncbihelper-perl_1.7.8-1_amd64.changes: ------------------------------------------------ Format: 1.8 Date: Sun, 17 Dec 2023 16:56:22 +0100 Source: libbio-db-ncbihelper-perl Binary: libbio-db-ncbihelper-perl Architecture: source all Version: 1.7.8-1 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-db-ncbihelper-perl - collection of routines useful for queries to NCBI databases Changes: libbio-db-ncbihelper-perl (1.7.8-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * d/control: remove obsolete constraints (routine-upsdate) * d/copyright: refresh copyright years. 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02b6f88b42b6f82eee7b9554bd0bdb9ca42b57f2753ad31df6a1ed29b9017a55 6894 libbio-db-ncbihelper-perl_1.7.8-1_amd64.buildinfo Files: 8ca383d14be085d8bbde56849ce3cb4f 1593 perl optional libbio-db-ncbihelper-perl_1.7.8-1.dsc 6c23bce7c78b806bfcce14efc3079077 45770 perl optional libbio-db-ncbihelper-perl_1.7.8.orig.tar.gz 60a1a18e61cbb5af198d818d4eb7cf59 3256 perl optional libbio-db-ncbihelper-perl_1.7.8-1.debian.tar.xz a4964158b3f3a39b49ce3d54608e1a49 56072 perl optional libbio-db-ncbihelper-perl_1.7.8-1_all.deb 318e1f11b6878e5225b40de15045efa5 6894 perl optional libbio-db-ncbihelper-perl_1.7.8-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-db-ncbihelper-perl Binary: libbio-db-ncbihelper-perl Architecture: all source Version: 1.7.8-1 Checksums-Md5: 8ca383d14be085d8bbde56849ce3cb4f 1593 libbio-db-ncbihelper-perl_1.7.8-1.dsc a4964158b3f3a39b49ce3d54608e1a49 56072 libbio-db-ncbihelper-perl_1.7.8-1_all.deb Checksums-Sha1: 12de85aff44b4c7c72c362673c2e3200cbc81852 1593 libbio-db-ncbihelper-perl_1.7.8-1.dsc 904d8a5e3cc5c65addec5a2b74f4df0f759641a4 56072 libbio-db-ncbihelper-perl_1.7.8-1_all.deb Checksums-Sha256: 10fc2862d852467897fd812cdfe3ccc785a1265fde601103306b234d2e4c847f 1593 libbio-db-ncbihelper-perl_1.7.8-1.dsc a16a49d168688bc006d467c7e4f5686a548438c4c0f5c51b79f323f3751de264 56072 libbio-db-ncbihelper-perl_1.7.8-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Jun 2024 17:24:40 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-7), bsdutils (= 1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libbio-asn1-entrezgene-perl (= 1.730-3), libbio-cluster-perl (= 1.7.3-6), libbio-perl-perl (= 1.7.8-1), libbio-variation-perl (= 1.7.5-3), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcache-cache-perl (= 1.08-3), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.1.0-1), libcgi-pm-perl (= 4.64-1), libclass-data-inheritable-perl (= 0.08-3), libclone-perl (= 0.46-1+b3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libencode-locale-perl (= 1.05-3), liberror-perl (= 0.17029-2), libexception-class-perl (= 1.45-1), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhtml-parser-perl (= 3.82-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.085-1), libio-string-perl (= 1.08-4), libipc-sharelite-perl (= 0.17-5+b3), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256~rc3-7), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-requiresinternet-perl (= 0.05-4), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.1-7), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b3), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml-twig-perl (= 1:3.52-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-5), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.2.1-3), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1702828582" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-db-ncbihelper-perl_1.7.8-1_all.deb ----------------------------------------- new Debian package, version 2.0. size 56072 bytes: control archive=1500 bytes. 865 bytes, 17 lines control 1920 bytes, 24 lines md5sums Package: libbio-db-ncbihelper-perl Version: 1.7.8-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 160 Depends: perl:any, libbio-perl-perl, libbio-asn1-entrezgene-perl, libcache-cache-perl, libcgi-pm-perl, libhttp-message-perl, liburi-perl, libwww-perl, libxml-twig-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-DB-NCBIHelper Description: collection of routines useful for queries to NCBI databases Provides a single place to setup some common methods for querying NCBI web databases. Bio::DB::NCBIHelper just centralizes the methods for constructing a URL for querying NCBI GenBank and NCBI GenPept and the common HTML stripping done in postprocess_data(). . The base NCBI query URL used is: https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi drwxr-xr-x root/root 0 2023-12-17 15:56 ./ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/bin/ -rwxr-xr-x root/root 8246 2023-12-17 15:56 ./usr/bin/bp_biofetch_genbank_proxy -rwxr-xr-x root/root 3316 2023-12-17 15:56 ./usr/bin/bp_download_query_genbank -rwxr-xr-x root/root 2701 2023-12-17 15:56 ./usr/bin/bp_query_entrez_taxa drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/doc/libbio-db-ncbihelper-perl/ -rw-r--r-- root/root 879 2023-12-17 15:56 ./usr/share/doc/libbio-db-ncbihelper-perl/changelog.Debian.gz -rw-r--r-- root/root 646 2023-12-15 04:22 ./usr/share/doc/libbio-db-ncbihelper-perl/changelog.gz -rw-r--r-- root/root 1547 2023-12-17 15:56 ./usr/share/doc/libbio-db-ncbihelper-perl/copyright drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/doc/libbio-db-ncbihelper-perl/examples/ -rw-r--r-- root/root 5326 2023-12-15 04:22 ./usr/share/doc/libbio-db-ncbihelper-perl/examples/gb2features.pl -rw-r--r-- root/root 785 2023-12-15 04:22 ./usr/share/doc/libbio-db-ncbihelper-perl/examples/getGenBank.pl -rw-r--r-- root/root 4118 2023-12-15 04:22 ./usr/share/doc/libbio-db-ncbihelper-perl/examples/subsequence.cgi drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/man/man1/ -rw-r--r-- root/root 2235 2023-12-17 15:56 ./usr/share/man/man1/bp_biofetch_genbank_proxy.1p.gz -rw-r--r-- root/root 1359 2023-12-17 15:56 ./usr/share/man/man1/bp_download_query_genbank.1p.gz -rw-r--r-- root/root 1257 2023-12-17 15:56 ./usr/share/man/man1/bp_query_entrez_taxa.1p.gz drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/man/man3/ -rw-r--r-- root/root 2492 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::EntrezGene.3pm.gz -rw-r--r-- root/root 4497 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::GenBank.3pm.gz -rw-r--r-- root/root 2769 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::GenPept.3pm.gz -rw-r--r-- root/root 4415 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::NCBIHelper.3pm.gz -rw-r--r-- root/root 3668 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::Query::GenBank.3pm.gz -rw-r--r-- root/root 3456 2023-12-17 15:56 ./usr/share/man/man3/Bio::DB::Taxonomy::entrez.3pm.gz drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/perl5/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/perl5/Bio/DB/ -rw-r--r-- root/root 5582 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/EntrezGene.pm -rw-r--r-- root/root 12168 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/GenBank.pm -rw-r--r-- root/root 6756 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/GenPept.pm -rw-r--r-- root/root 22597 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/NCBIHelper.pm drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/perl5/Bio/DB/Query/ -rw-r--r-- root/root 11174 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/Query/GenBank.pm drwxr-xr-x root/root 0 2023-12-17 15:56 ./usr/share/perl5/Bio/DB/Taxonomy/ -rw-r--r-- root/root 21992 2023-12-15 04:22 ./usr/share/perl5/Bio/DB/Taxonomy/entrez.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1152 Build-Time: 4 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/libbio-db-ncbihelper-perl_1.7.8-1.dsc Machine Architecture: amd64 Package: libbio-db-ncbihelper-perl Package-Time: 18 Source-Version: 1.7.8-1 Space: 1152 Status: successful Version: 1.7.8-1 -------------------------------------------------------------------------------- Finished at 2024-06-03T17:24:40Z Build needed 00:00:18, 1152k disk space