sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk

+==============================================================================+
| libbio-db-gff-perl 1.7.4-1 (amd64)           Mon, 03 Jun 2024 17:23:54 +0000 |
+==============================================================================+

Package: libbio-db-gff-perl
Version: 1.7.4-1
Source Version: 1.7.4-1
Distribution: perl-5.40-throwaway
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-b3079e61-7668-4475-a68a-f97c16a8a394' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-gff-perl_1.7.4-1 perl-5.40-throwaway amd64
---------------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-gff-perl_1.7.4-1 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------
I: NOTICE: Log filtering will replace 'build/libbio-db-gff-perl-g6vlZ9/resolver-N3UbmI' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B]
Get:2 http://localhost:3142/debian unstable InRelease [198 kB]
Get:3 http://localhost:3142/debian sid InRelease [198 kB]
Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B]
Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB]
Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
Get:7 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB]
Get:7 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB]
Get:8 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB]
Fetched 571 kB in 2s (252 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  login passwd
2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 1564 kB of archives.
After this operation, 57.3 kB disk space will be freed.
Get:1 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB]
Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Preparing to unpack .../login_1%3a4.13+dfsg1-5_amd64.deb ...
Unpacking login (1:4.13+dfsg1-5) over (1:4.13+dfsg1-4) ...
Setting up login (1:4.13+dfsg1-5) ...
Installing new version of config file /etc/pam.d/login ...
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(Reading database ... 21765 files and directories currently installed.)
Preparing to unpack .../passwd_1%3a4.13+dfsg1-5_amd64.deb ...
Unpacking passwd (1:4.13+dfsg1-5) over (1:4.13+dfsg1-4) ...
Setting up passwd (1:4.13+dfsg1-5) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/srv/debomatic/incoming/libbio-db-gff-perl_1.7.4-1.dsc exists in /srv/debomatic/incoming; copying to chroot
I: NOTICE: Log filtering will replace 'build/libbio-db-gff-perl-g6vlZ9/libbio-db-gff-perl-1.7.4' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbio-db-gff-perl-g6vlZ9' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl, build-essential, fakeroot, perl
Filtered Build-Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl, build-essential, fakeroot, perl
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [763 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [775 B]
Fetched 2147 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  apache2-bin autoconf automake autopoint autotools-dev bsdextrautils
  ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot
  file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl
  libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3
  libaprutil1-ldap libaprutil1t64 libarchive-zip-perl libbio-db-biofetch-perl
  libbio-perl-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl
  libclass-data-inheritable-perl libclone-perl libcom-err2 libcurl4t64
  libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl
  libdevel-symdump-perl libelf1t64 libencode-locale-perl
  libexception-class-perl libexpat1 libfakeroot libfile-listing-perl
  libfile-stripnondeterminism-perl libgssapi-krb5-2 libhtml-parser-perl
  libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
  libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl
  libio-socket-ssl-perl libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblua5.3-0 liblwp-mediatypes-perl
  liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl
  libnet-http-perl libnet-ssleay-perl libnghttp2-14 libpipeline1 libpsl5t64
  librtmp1 libssh2-1t64 libsub-uplevel-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-most-perl
  libtest-warn-perl libtext-diff-perl libtimedate-perl libtool
  libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl
  libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf
  sensible-utils
Suggested packages:
  apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl
  libmldbm-perl libnet-daemon-perl libsql-statement-perl krb5-doc krb5-user
  libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran
  | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl
  libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libalgorithm-diff-xs-perl libapache2-reload-perl
  libbsd-resource-perl bioperl-run | libbio-perl-run-perl libace-perl
  libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
  libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
  libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl
  libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
  libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
  libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
  libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
  libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
  libxml-writer-perl libxml-libxml-perl libcgi-fast-perl perl-tk
  libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl
  libxml-perl libarchive-cpio-perl libhtml-format-perl
  libio-compress-brotli-perl krb5-locales libmodule-signature-perl
  libpod-readme-perl libsoftware-license-perl publicsuffix libltdl-dev
  libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl
  libmail-sendmail-perl
The following NEW packages will be installed:
  apache2-bin autoconf automake autopoint autotools-dev bsdextrautils
  ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot
  file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl
  libapache-dbi-perl libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3
  libaprutil1-ldap libaprutil1t64 libarchive-zip-perl libbio-db-biofetch-perl
  libbio-perl-perl libbrotli1 libcapture-tiny-perl libcgi-pm-perl
  libclass-data-inheritable-perl libclone-perl libcom-err2 libcurl4t64
  libdata-stag-perl libdbi-perl libdebhelper-perl libdevel-stacktrace-perl
  libdevel-symdump-perl libelf1t64 libencode-locale-perl
  libexception-class-perl libexpat1 libfakeroot libfile-listing-perl
  libfile-stripnondeterminism-perl libgssapi-krb5-2 libhtml-parser-perl
  libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl
  libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl
  libio-socket-ssl-perl libio-string-perl libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblua5.3-0 liblwp-mediatypes-perl
  liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl
  libnet-http-perl libnet-ssleay-perl libnghttp2-14 libpipeline1 libpsl5t64
  librtmp1 libssh2-1t64 libsub-uplevel-perl libtest-deep-perl
  libtest-differences-perl libtest-exception-perl libtest-most-perl
  libtest-warn-perl libtext-diff-perl libtimedate-perl libtool
  libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl
  libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf
  sbuild-build-depends-main-dummy sensible-utils
0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 29.2 MB/31.2 MB of archives.
After this operation, 110 MB of additional disk space will be used.
Get:1 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.82-1+b1 [99.2 kB]
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B]
Get:3 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get:5 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB]
Get:8 file:/srv/reprepro perl-5.40/main amd64 libapache2-mod-perl2 amd64 2.0.13-1+b4 [810 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB]
Get:11 file:/srv/reprepro perl-5.40/main amd64 libdbi-perl amd64 1.643-4+b3 [755 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libapr1t64 amd64 1.7.2-3.2 [102 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libaprutil1t64 amd64 1.6.3-2 [88.3 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libaprutil1-dbd-sqlite3 amd64 1.6.3-2 [13.8 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libaprutil1-ldap amd64 1.6.3-2 [12.0 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B]
Get:30 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 liblua5.3-0 amd64 5.3.6-2+b2 [129 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 apache2-bin amd64 2.4.59-2 [1382 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:52 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libdevel-symdump-perl all 2.18-5 [15.8 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:75 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 libapache-dbi-perl all 1.12-3 [48.5 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.64-1 [217 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:89 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libmodule-build-perl all 0.423400-2 [252 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 29.2 MB in 0s (97.4 MB/s)
Selecting previously unselected package netbase.
(Reading database ... 21765 files and directories currently installed.)
Preparing to unpack .../00-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ...
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Configuration file '/etc/protocols'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
 ==> Using current old file as you requested.

Configuration file '/etc/services'
 ==> File on system created by you or by a script.
 ==> File also in package provided by package maintainer.
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146 added, 0 removed; done.
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Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up groff-base (1.23.0-4) ...
Setting up libhtml-parser-perl:amd64 (3.82-1+b1) ...
Setting up libio-socket-ssl-perl (2.085-1) ...
Setting up libhttp-message-perl (6.46-1) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libcurl4t64:amd64 (8.8.0-1) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libcgi-pm-perl (4.64-1) ...
Setting up apache2-bin (2.4.59-2) ...
Setting up man-db (2.12.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.15.3) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.77-1) ...
Setting up libapache2-mod-perl2 (2.0.13-1+b4) ...
Setting up libbio-db-biofetch-perl (1.7.3-4) ...
Setting up libapache-dbi-perl (1.12-3) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.38-12) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64)
Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1
Package versions: adduser_3.137 apache2-bin_2.4.59-2 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapache-dbi-perl_1.12-3 libapache2-mod-perl2_2.0.13-1+b4 libapr1t64_1.7.2-3.2 libaprutil1-dbd-sqlite3_1.6.3-2 libaprutil1-ldap_1.6.3-2 libaprutil1t64_1.6.3-2 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-db-biofetch-perl_1.7.3-4 libbio-perl-perl_1.7.8-1 libblkid1_2.40.1-7 libbrotli1_1.1.0-2+b3 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.1.0-1 libcgi-pm-perl_4.64-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b3 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libcurl4t64_8.8.0-1 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdbi-perl_1.643-4+b3 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdevel-stacktrace-perl_2.0500-1 libdevel-symdump-perl_2.18-5 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.2-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libgssapi-krb5-2_1.20.1-6+b1 libhogweed6t64_3.9.1-2.2 libhtml-parser-perl_3.82-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.085-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libk5crypto3_1.20.1-6+b1 libkeyutils1_1.6.3-3 libkrb5-3_1.20.1-6+b1 libkrb5support0_1.20.1-6+b1 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblua5.3-0_5.3.6-2+b2 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmodule-build-perl_0.423400-2 libmount1_2.40.1-7 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.9.1-2.2 libnghttp2-14_1.61.0-1+b1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libpsl5t64_0.21.2-1.1 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssh2-1t64_1.11.0-5 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.1-7 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.2.1-3 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: libbio-db-gff-perl
Binary: libbio-db-gff-perl
Architecture: all
Version: 1.7.4-1
Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: https://metacpan.org/release/Bio-DB-GFF
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-gff-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-db-gdd.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 12), libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl, libtest-most-perl, libmodule-build-perl
Build-Depends-Indep: perl
Package-List:
 libbio-db-gff-perl deb perl optional arch=all
Checksums-Sha1:
 a8119d0f8d43e2380f89531a18a366e97dc10ef3 281469 libbio-db-gff-perl_1.7.4.orig.tar.gz
 2b12f80c493209c5cade7ebb00c9533cdfef2011 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz
Checksums-Sha256:
 9becc9df6f6b7c5174aa0b818e7c6a0f2feb92aacf3ac2bd94071edc65b81267 281469 libbio-db-gff-perl_1.7.4.orig.tar.gz
 9fa118d284e408097733127e7733f15fcefd19cb40f1297d43fdf3c435a8ffc4 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz
Files:
 f603ebc9a1d8574cdfc4812ef4b9abec 281469 libbio-db-gff-perl_1.7.4.orig.tar.gz
 01ce0df5e07509f48b2834190764e98c 1968 libbio-db-gff-perl_1.7.4-1.debian.tar.xz

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gpgv: Signature made Mon Jan 13 15:19:19 2020 UTC
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-db-gff-perl_1.7.4-1.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-db-gff-perl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4.orig.tar.gz
dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4-1.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-gff-perl_1.7.4-1 perl-5.40-throwaway amd64
---------------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-gff-perl_1.7.4-1 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=debomatic
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic
SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic
SCHROOT_COMMAND=env
SCHROOT_GID=110
SCHROOT_GROUP=sbuild
SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-b3079e61-7668-4475-a68a-f97c16a8a394
SCHROOT_UID=1002
SCHROOT_USER=debomatic
SHELL=/bin/sh
USER=debomatic

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz
dpkg-buildpackage: info: source package libbio-db-gff-perl
dpkg-buildpackage: info: source version 1.7.4-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <michael.crusoe@gmail.com>
 dpkg-source -Zxz --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean
   dh_clean
 dpkg-source -Zxz -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building libbio-db-gff-perl using existing ./libbio-db-gff-perl_1.7.4.orig.tar.gz
dpkg-source: info: building libbio-db-gff-perl in libbio-db-gff-perl_1.7.4-1.debian.tar.xz
dpkg-source: info: building libbio-db-gff-perl in libbio-db-gff-perl_1.7.4-1.dsc
 debian/rules build
dh build
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::DB::GFF
Writing MYMETA.yml and MYMETA.json
   dh_auto_build
	make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm
cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
cp lib/Bio/DB/GFF/Aggregator.pm blib/lib/Bio/DB/GFF/Aggregator.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
cp lib/Bio/DB/GFF/Aggregator/so_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm
cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm
cp lib/Bio/DB/GFF/Aggregator/coding.pm blib/lib/Bio/DB/GFF/Aggregator/coding.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm
cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm
cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm
cp lib/Bio/DB/GFF/Aggregator/orf.pm blib/lib/Bio/DB/GFF/Aggregator/orf.pm
cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm
cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm
cp lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm
cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm
cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm
cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm
cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm
cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
cp lib/Bio/DB/GFF/Homol.pm blib/lib/Bio/DB/GFF/Homol.pm
cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm
cp lib/Bio/DB/GFF/Typename.pm blib/lib/Bio/DB/GFF/Typename.pm
cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
cp bin/bp_bulk_load_gff blib/script/bp_bulk_load_gff
cp bin/bp_das_server blib/script/bp_das_server
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bulk_load_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_das_server
cp bin/bp_fast_load_gff blib/script/bp_fast_load_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fast_load_gff
cp bin/bp_genbank2gff blib/script/bp_genbank2gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff
cp bin/bp_generate_histogram blib/script/bp_generate_histogram
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_generate_histogram
cp bin/bp_load_gff blib/script/bp_load_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff
cp bin/bp_meta_gff blib/script/bp_meta_gff
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_meta_gff
Manifying 6 pod documents
Manifying 27 pod documents
Manifying 16 pod documents
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test
	make -j2 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ......... 
1..50
ok 1 - Bio/DB/GFF.pm loaded ok
ok 2 - Bio/DB/GFF/Adaptor/berkeleydb.pm loaded ok
ok 3 - Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm loaded ok
ok 4 - Bio/DB/GFF/Adaptor/biofetch.pm loaded ok
ok 5 - Bio/DB/GFF/Adaptor/biofetch_oracle.pm loaded ok
ok 6 - Bio/DB/GFF/Adaptor/dbi.pm loaded ok
ok 7 - Bio/DB/GFF/Adaptor/dbi/caching_handle.pm loaded ok
ok 8 - Bio/DB/GFF/Adaptor/dbi/iterator.pm loaded ok
ok 9 - Bio/DB/GFF/Adaptor/dbi/mysql.pm loaded ok
ok 10 - Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm loaded ok
ok 11 - Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm loaded ok
ok 12 - Bio/DB/GFF/Adaptor/dbi/oracle.pm loaded ok
ok 13 - Bio/DB/GFF/Adaptor/dbi/pg.pm loaded ok
ok 14 - Bio/DB/GFF/Adaptor/dbi/pg_fts.pm loaded ok
ok 15 - Bio/DB/GFF/Adaptor/memory.pm loaded ok
ok 16 - Bio/DB/GFF/Adaptor/memory/feature_serializer.pm loaded ok
ok 17 - Bio/DB/GFF/Adaptor/memory/iterator.pm loaded ok
ok 18 - Bio/DB/GFF/Aggregator.pm loaded ok
ok 19 - Bio/DB/GFF/Aggregator/alignment.pm loaded ok
ok 20 - Bio/DB/GFF/Aggregator/clone.pm loaded ok
ok 21 - Bio/DB/GFF/Aggregator/coding.pm loaded ok
ok 22 - Bio/DB/GFF/Aggregator/gene.pm loaded ok
ok 23 - Bio/DB/GFF/Aggregator/match.pm loaded ok
ok 24 - Bio/DB/GFF/Aggregator/none.pm loaded ok
ok 25 - Bio/DB/GFF/Aggregator/orf.pm loaded ok
ok 26 - Bio/DB/GFF/Aggregator/processed_transcript.pm loaded ok
ok 27 - Bio/DB/GFF/Aggregator/so_transcript.pm loaded ok
ok 28 - Bio/DB/GFF/Aggregator/transcript.pm loaded ok
ok 29 - Bio/DB/GFF/Aggregator/ucsc_acembly.pm loaded ok
ok 30 - Bio/DB/GFF/Aggregator/ucsc_ensgene.pm loaded ok
ok 31 - Bio/DB/GFF/Aggregator/ucsc_genscan.pm loaded ok
ok 32 - Bio/DB/GFF/Aggregator/ucsc_refgene.pm loaded ok
ok 33 - Bio/DB/GFF/Aggregator/ucsc_sanger22.pm loaded ok
ok 34 - Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm loaded ok
ok 35 - Bio/DB/GFF/Aggregator/ucsc_softberry.pm loaded ok
ok 36 - Bio/DB/GFF/Aggregator/ucsc_twinscan.pm loaded ok
ok 37 - Bio/DB/GFF/Aggregator/ucsc_unigene.pm loaded ok
ok 38 - Bio/DB/GFF/Featname.pm loaded ok
ok 39 - Bio/DB/GFF/Feature.pm loaded ok
ok 40 - Bio/DB/GFF/Homol.pm loaded ok
ok 41 - Bio/DB/GFF/RelSegment.pm loaded ok
ok 42 - Bio/DB/GFF/Segment.pm loaded ok
ok 43 - Bio/DB/GFF/Typename.pm loaded ok
ok 44 - bin/bp_bulk_load_gff compiled ok
ok 45 - bin/bp_das_server compiled ok
ok 46 - bin/bp_fast_load_gff compiled ok
ok 47 - bin/bp_genbank2gff compiled ok
ok 48 - bin/bp_generate_histogram compiled ok
ok 49 - bin/bp_load_gff compiled ok
ok 50 - bin/bp_meta_gff compiled ok
ok
t/author-mojibake.t .... skipped: these tests are for testing by the author
t/author-pod-syntax.t .. skipped: these tests are for testing by the author

You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.

t/BioDBGFF.t ........... 
1..275
ok 1 - use Bio::DB::GFF;
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 102 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
ok 124
ok 125
ok 126
ok 127
ok 128
ok 129
ok 130
ok 131
ok 132 # skip delete_groups() not implemented by this adaptor
ok 133 # skip delete_groups() not implemented by this adaptor
ok 134
ok 135
ok 136
ok 137
ok 138
ok 139
ok 140
ok 141
ok 142
ok 143
ok 144
ok 145
ok 146
ok 147
ok 148
ok 149
ok 150
ok 151
ok 152
ok 153
ok 154
ok 155
ok 156
ok 157
ok 158
ok 159
ok 160
ok 161
ok 162
ok 163
ok 164
ok 165
ok 166
ok 167
ok 168
ok 169
ok 170
ok 171
ok 172
ok 173
ok 174
ok 175
ok 176
ok 177
ok 178
ok 179
ok 180
ok 181
ok 182
ok 183
ok 184
ok 185
ok 186
ok 187
ok 188
ok 189
ok 190
ok 191
ok 192
ok 193
ok 194
ok 195
ok 196
ok 197
ok 198
ok 199
ok 200
ok 201
ok 202
ok 203
ok 204
ok 205
ok 206
ok 207
ok 208
ok 209
ok 210
ok 211
ok 212
ok 213
ok 214
ok 215
ok 216
ok 217
ok 218
ok 219
ok 220
ok 221
ok 222
ok 223
ok 224
ok 225
ok 226
ok 227
ok 228
ok 229
ok 230
ok 231
ok 232
ok 233
ok 234
ok 235
ok 236
ok 237
ok 238 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 239 # skip fetch_feature_by_gid() not implemented by this adaptor
ok 240
ok 241
ok 242
ok 243
ok 244
ok 245
ok 246 # skip preferred groups are not supported by gff3
ok 247 # skip preferred groups are not supported by gff3
ok 248 # skip preferred groups are not supported by gff3
ok 249
ok 250
ok 251
ok 252
ok 253
ok 254
ok 255
ok 256
ok 257
ok 258
ok 259
ok 260
ok 261
ok 262
ok 263
ok 264
ok 265
ok 266
ok 267
ok 268
ok 269 # skip delete_groups() not implemented by this adaptor
ok 270 # skip delete_groups() not implemented by this adaptor
ok 271
ok 272
ok 273
ok 274
ok 275
ok
All tests successful.
Files=4, Tests=325,  4 wallclock secs ( 0.04 usr  0.01 sys +  3.06 cusr  0.60 csys =  3.71 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary
dh binary
   dh_testroot
   dh_prep
   dh_auto_install --destdir=debian/libbio-db-gff-perl/
	make -j2 install DESTDIR=/<<PKGBUILDDIR>>/debian/libbio-db-gff-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Manifying 6 pod documents
Manifying 27 pod documents
Manifying 16 pod documents
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Featname.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Feature.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Homol.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/oracle.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/match.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/coding.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/so_transcript.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/orf.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_fast_load_gff.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_genbank2gff.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_load_gff.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_meta_gff.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_generate_histogram.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man1/bp_bulk_load_gff.1p
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_acembly.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::none.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_twinscan.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::RelSegment.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_refgene.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::alignment.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_genscan.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_unigene.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::clone.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Featname.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::coding.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::gene.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg_fts.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::transcript.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_ensgene.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Segment.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::so_transcript.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Feature.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::oracle.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::orf.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::match.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::pg.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Typename.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::feature_serializer.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::processed_transcript.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::memory::iterator.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Homol.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_sanger22.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Aggregator::ucsc_softberry.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_load_gff
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_fast_load_gff
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_das_server
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_generate_histogram
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_genbank2gff
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff
Installing /<<PKGBUILDDIR>>/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'libbio-db-gff-perl' in '../libbio-db-gff-perl_1.7.4-1_all.deb'.
 dpkg-genbuildinfo -O../libbio-db-gff-perl_1.7.4-1_amd64.buildinfo
 dpkg-genchanges -O../libbio-db-gff-perl_1.7.4-1_amd64.changes
dpkg-genchanges: info: including full source code in upload
 dpkg-source -Zxz --after-build .
dpkg-buildpackage: info: full upload (original source is included)
--------------------------------------------------------------------------------
Build finished at 2024-06-03T17:24:16Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


libbio-db-gff-perl_1.7.4-1_amd64.changes:
-----------------------------------------

Format: 1.8
Date: Mon, 13 Jan 2020 13:16:18 +0100
Source: libbio-db-gff-perl
Binary: libbio-db-gff-perl
Architecture: source all
Version: 1.7.4-1
Distribution: perl-5.40-throwaway
Urgency: medium
Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
Changed-By: Michael R. Crusoe <michael.crusoe@gmail.com>
Description:
 libbio-db-gff-perl - Storage and retrieval of sequence annotation data
Changes:
 libbio-db-gff-perl (1.7.4-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.4.1
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+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

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Binary: libbio-db-gff-perl
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Mon, 03 Jun 2024 17:24:16 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
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 init-system-helpers (= 1.66),
 intltool-debian (= 0.35.0+20060710.6),
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 libapache-dbi-perl (= 1.12-3),
 libapache2-mod-perl2 (= 2.0.13-1+b4),
 libapr1t64 (= 1.7.2-3.2),
 libaprutil1-dbd-sqlite3 (= 1.6.3-2),
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 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.1.0-1),
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 libaudit1 (= 1:3.1.2-2.1),
 libbinutils (= 2.42-4),
 libbio-db-biofetch-perl (= 1.7.3-4),
 libbio-perl-perl (= 1.7.8-1),
 libblkid1 (= 2.40.1-7),
 libbrotli1 (= 1.1.0-2+b3),
 libbz2-1.0 (= 1.0.8-5.1),
 libc-bin (= 2.38-12),
 libc-dev-bin (= 2.38-12),
 libc6 (= 2.38-12),
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 libcap-ng0 (= 0.8.5-1),
 libcap2 (= 1:2.66-5),
 libcapture-tiny-perl (= 0.48-2),
 libcc1-0 (= 14.1.0-1),
 libcgi-pm-perl (= 4.64-1),
 libclass-data-inheritable-perl (= 0.08-3),
 libclone-perl (= 0.46-1+b3),
 libcom-err2 (= 1.47.1-1),
 libcrypt-dev (= 1:4.4.36-4),
 libcrypt1 (= 1:4.4.36-4),
 libctf-nobfd0 (= 2.42-4),
 libctf0 (= 2.42-4),
 libcurl4t64 (= 8.8.0-1),
 libdata-stag-perl (= 0.14-3),
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 libdbi-perl (= 1.643-4+b3),
 libdebconfclient0 (= 0.272),
 libdebhelper-perl (= 13.15.3),
 libdevel-stacktrace-perl (= 2.0500-1),
 libdevel-symdump-perl (= 2.18-5),
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 libencode-locale-perl (= 1.05-3),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.6.2-1),
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 libfile-listing-perl (= 6.16-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libgcc-13-dev (= 13.2.0-25),
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 libgdbm6t64 (= 1.23-5.1+b1),
 libgmp10 (= 2:6.3.0+dfsg-2+b1),
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 libhogweed6t64 (= 3.9.1-2.2),
 libhtml-parser-perl (= 3.82-1+b1),
 libhtml-tagset-perl (= 3.24-1),
 libhtml-tree-perl (= 5.07-3),
 libhttp-cookies-perl (= 6.11-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.46-1),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 14.1.0-1),
 libicu72 (= 72.1-4+b1),
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 libio-string-perl (= 1.08-4),
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 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.14-1),
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 libpam-modules-bin (= 1.5.3-7),
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 libquadmath0 (= 14.1.0-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
 libsasl2-2 (= 2.1.28+dfsg1-6),
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 libselinux1 (= 3.5-2+b2),
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 libtest-most-perl (= 0.38-1),
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 libuchardet0 (= 0.0.8-1+b1),
 libudev1 (= 256~rc3-7),
 libunistring5 (= 1.2-1),
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 libxml2 (= 2.12.7+dfsg-3),
 libzstd1 (= 1.5.5+dfsg2-2),
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 patch (= 2.7.6-7),
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 perl-openssl-defaults (= 7+b2),
 po-debconf (= 1.0.21+nmu1),
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 xz-utils (= 5.6.1+really5.4.5-1),
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Environment:
 DEB_BUILD_OPTIONS="parallel=2"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1578917778"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libbio-db-gff-perl_1.7.4-1_all.deb
----------------------------------

 new Debian package, version 2.0.
 size 261204 bytes: control archive=3532 bytes.
    1283 bytes,    35 lines      control
    8721 bytes,   102 lines      md5sums
 Package: libbio-db-gff-perl
 Version: 1.7.4-1
 Architecture: all
 Maintainer: Michael R. Crusoe <michael.crusoe@gmail.com>
 Installed-Size: 842
 Depends: perl:any, libapache-dbi-perl, libbio-perl-perl, libbio-db-biofetch-perl, libcgi-pm-perl
 Breaks: libbio-perl-perl (<< 1.7.3)
 Replaces: libbio-perl-perl (<< 1.7.3)
 Section: perl
 Priority: optional
 Homepage: https://metacpan.org/release/Bio-DB-GFF
 Description: Storage and retrieval of sequence annotation data
  Bio::DB::GFF provides fast indexed access to a sequence annotation database.
  It supports multiple database types (ACeDB, relational), and multiple schemas
  through a system of adaptors and aggregators.
  .
  The following operations are supported by this module:
  .
   - retrieving a segment of sequence based on the ID of a landmark
  .
   - retrieving the DNA from that segment
  .
   - finding all annotations that overlap with the segment
  .
   - finding all annotations that are completely contained within the
  segment
  .
   - retrieving all annotations of a particular type, either within a
  segment, or globally
  .
   - conversion from absolute to relative coordinates and back again,
  using any arbitrary landmark for the relative coordinates
  .
   - using a sequence segment to create new segments based on relative
  offsets

drwxr-xr-x root/root         0 2020-01-13 12:16 ./
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-rwxr-xr-x root/root     14904 2020-01-13 12:16 ./usr/bin/bp_das_server
-rwxr-xr-x root/root     15702 2020-01-13 12:16 ./usr/bin/bp_fast_load_gff
-rwxr-xr-x root/root     10434 2020-01-13 12:16 ./usr/bin/bp_genbank2gff
-rwxr-xr-x root/root      3659 2020-01-13 12:16 ./usr/bin/bp_generate_histogram
-rwxr-xr-x root/root      6174 2020-01-13 12:16 ./usr/bin/bp_load_gff
-rwxr-xr-x root/root      2230 2020-01-13 12:16 ./usr/bin/bp_meta_gff
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/doc/libbio-db-gff-perl/
-rw-r--r-- root/root       309 2020-01-13 12:16 ./usr/share/doc/libbio-db-gff-perl/changelog.Debian.gz
-rw-r--r-- root/root       278 2020-01-08 20:41 ./usr/share/doc/libbio-db-gff-perl/changelog.gz
-rw-r--r-- root/root      1137 2020-01-13 12:16 ./usr/share/doc/libbio-db-gff-perl/copyright
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/man/
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/man/man1/
-rw-r--r-- root/root      2726 2020-01-13 12:16 ./usr/share/man/man1/bp_bulk_load_gff.1p.gz
-rw-r--r-- root/root      2650 2020-01-13 12:16 ./usr/share/man/man1/bp_fast_load_gff.1p.gz
-rw-r--r-- root/root      1929 2020-01-13 12:16 ./usr/share/man/man1/bp_genbank2gff.1p.gz
-rw-r--r-- root/root      1445 2020-01-13 12:16 ./usr/share/man/man1/bp_generate_histogram.1p.gz
-rw-r--r-- root/root      2409 2020-01-13 12:16 ./usr/share/man/man1/bp_load_gff.1p.gz
-rw-r--r-- root/root      1503 2020-01-13 12:16 ./usr/share/man/man1/bp_meta_gff.1p.gz
drwxr-xr-x root/root         0 2020-01-13 12:16 ./usr/share/man/man3/
-rw-r--r-- root/root     24438 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF.3pm.gz
-rw-r--r-- root/root      3005 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm.gz
-rw-r--r-- root/root      1230 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm.gz
-rw-r--r-- root/root      1968 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch.3pm.gz
-rw-r--r-- root/root      1979 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::biofetch_oracle.3pm.gz
-rw-r--r-- root/root      9351 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi.3pm.gz
-rw-r--r-- root/root      2192 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::caching_handle.3pm.gz
-rw-r--r-- root/root      1222 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::iterator.3pm.gz
-rw-r--r-- root/root      4496 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysql.3pm.gz
-rw-r--r-- root/root      4849 2020-01-13 12:16 ./usr/share/man/man3/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3pm.gz
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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: full
Build-Space: 4368
Build-Time: 8
Distribution: perl-5.40-throwaway
Host Architecture: amd64
Install-Time: 9
Job: /srv/debomatic/incoming/libbio-db-gff-perl_1.7.4-1.dsc
Machine Architecture: amd64
Package: libbio-db-gff-perl
Package-Time: 22
Source-Version: 1.7.4-1
Space: 4368
Status: successful
Version: 1.7.4-1
--------------------------------------------------------------------------------
Finished at 2024-06-03T17:24:16Z
Build needed 00:00:22, 4368k disk space