sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-coordinate-perl 1.7.1-4 (amd64) Mon, 03 Jun 2024 17:22:15 +0000 | +==============================================================================+ Package: libbio-coordinate-perl Version: 1.7.1-4 Source Version: 1.7.1-4 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-d7b9885b-9088-4ee0-b39e-19b417be6a0d' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-coordinate-perl_1.7.1-4 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-coordinate-perl_1.7.1-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-coordinate-perl-06Pbh5/resolver-LG5NLY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 http://localhost:3142/debian unstable InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Fetched 571 kB in 2s (253 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: login passwd 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1564 kB of archives. After this operation, 57.3 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB] Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1564 kB in 0s (74.9 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21779 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-5_amd64.deb ... Unpacking login (1:4.13+dfsg1-5) over (1:4.13+dfsg1-4) ... Setting up login (1:4.13+dfsg1-5) ... Installing new version of config file /etc/pam.d/login ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-5_amd64.deb ... Unpacking passwd (1:4.13+dfsg1-5) over (1:4.13+dfsg1-4) ... Setting up passwd (1:4.13+dfsg1-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-coordinate-perl_1.7.1-4.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-coordinate-perl-06Pbh5/libbio-coordinate-perl-1.7.1' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-coordinate-perl-06Pbh5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, bioperl (>= 1.7.1), perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, bioperl (>= 1.7.1), perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [663 B] Get:5 copy:/<>/apt_archive ./ Packages [675 B] Fetched 1947 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 85.0 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:21 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:32 http://localhost:3142/debian unstable/main amd64 bioperl all 1.7.8-1 [246 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:35 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:38 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:39 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:40 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:43 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:44 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:45 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:46 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:48 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.7 MB in 0s (157 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-1) ... Setting up debhelper (13.15.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bioperl_1.7.8-1 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-perl-perl_1.7.8-1 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.1.0-1 libclass-data-inheritable-perl_0.08-3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libexception-class-perl_1.45-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 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libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 libuuid1_2.40.1-7 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all Version: 1.7.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://metacpan.org/release/Bio-Coordinate Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-coordinate-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: bioperl (>= 1.7.1), perl Package-List: libbio-coordinate-perl deb perl optional arch=all Checksums-Sha1: c6c03b7406c85c7fca0e8488635d933089449967 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz 5c7f281dc78f80d21a48e3c7e8d50ba8e810253f 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz Checksums-Sha256: 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz bf01a6c0dee853676de704f203700ff758c1096e247b97a258ec958c4e146143 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz Files: 7353a7d2f672a69f573aa08b86b4ddab 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz 8d5ec6405bea1b93258a52c858482828 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+9G5wRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEuxQ//fc0WJBarWAm8k5+0enYYhbPUUErW+JUC mAnTjck8rC4Zr5z4ebOJ/iDFyuxzbSlWByjFIkEzjY551HrD5xQlot1nqaNRttBa 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/<> dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-coordinate-perl_1.7.1-4 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-coordinate-perl_1.7.1-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-d7b9885b-9088-4ee0-b39e-19b417be6a0d SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-coordinate-perl using existing ./libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-coordinate-perl in libbio-coordinate-perl_1.7.1-4.debian.tar.xz dpkg-source: info: building libbio-coordinate-perl in libbio-coordinate-perl_1.7.1-4.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm Manifying 13 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..13 ok 1 - Bio/Coordinate.pm loaded ok ok 2 - Bio/Coordinate/Chain.pm loaded ok ok 3 - Bio/Coordinate/Collection.pm loaded ok ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok ok 6 - Bio/Coordinate/Graph.pm loaded ok ok 7 - Bio/Coordinate/MapperI.pm loaded ok ok 8 - Bio/Coordinate/Pair.pm loaded ok ok 9 - Bio/Coordinate/Result.pm loaded ok ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok ok 11 - Bio/Coordinate/Result/Match.pm loaded ok ok 12 - Bio/Coordinate/ResultI.pm loaded ok ok 13 - Bio/Coordinate/Utils.pm loaded ok ok t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/CoordinateBoundaryTest.t .. 1..174 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 5 ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 7 ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 9 ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 11 ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 33 ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 35 ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 51 ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 53 ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 69 ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 71 ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 89 ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 91 ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 109 ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 111 ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 113 ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 115 ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 133 ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 143 ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 153 ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 165 ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok t/CoordinateGraph.t ......... 1..7 ok 1 - use Bio::Coordinate::Graph; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/CoordinateMapper.t ........ 1..175 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::Result::Match; ok 4 - use Bio::Coordinate::Result::Gap; ok 5 - use Bio::Coordinate::Chain; ok 6 - use Bio::Coordinate::Collection; ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI' ok 16 ok 17 ok 18 ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI' ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap' ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 - Match: |314696| Test: 314696| ok 139 ok 140 ok 141 ok 142 - Match: |341| Test: 341| ok 143 ok 144 ok 145 ok 146 - Match: |315843| Test: 315843| ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - Match: |627011| Test: 627011| ok 153 ok 154 ok 155 ok 156 - Match: |chr1| Test: chr1| ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok t/GeneCoordinateMapper.t .... 1..116 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::ExtrapolatingPair; ok 4 - use Bio::Coordinate::GeneMapper; ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. Files=8, Tests=485, 1 wallclock secs ( 0.04 usr 0.02 sys + 0.90 cusr 0.13 csys = 1.09 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-coordinate-perl/ make -j2 install DESTDIR=/<>/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 13 pod documents Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /<>/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-4_all.deb'. dpkg-genbuildinfo -O../libbio-coordinate-perl_1.7.1-4_amd64.buildinfo dpkg-genchanges -O../libbio-coordinate-perl_1.7.1-4_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T17:22:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-coordinate-perl_1.7.1-4_amd64.changes: --------------------------------------------- Format: 1.8 Date: Tue, 24 Nov 2020 15:39:07 +0100 Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: source all Version: 1.7.1-4 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-coordinate-perl - BioPerl modules for working with biological coordinates Changes: libbio-coordinate-perl (1.7.1-4) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: 232c1e8a914d41be22d615e24e0935446b4833fe 1263 libbio-coordinate-perl_1.7.1-4.dsc e0fe18fa9cb4553c41d5d9885cff81d3f2d9fe40 2844 libbio-coordinate-perl_1.7.1-4.debian.tar.xz 50bef7734087d3b95417477d71a2169295542ef2 53528 libbio-coordinate-perl_1.7.1-4_all.deb 8de6dae6458b9c9b49781f429572452d70252217 5553 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo Checksums-Sha256: 69d56fa6e2b7234d16cedb240cc0ed7251cb2820b31f92e3544923e215288558 1263 libbio-coordinate-perl_1.7.1-4.dsc 2a6ce105ca5a51fcf53fe4ad371bf9b7dfa0ea7141289e985c00d988a803d0c3 2844 libbio-coordinate-perl_1.7.1-4.debian.tar.xz 952193794ed757a3b14584c8db321251e51d056c1d36790eceeb1a71000eee37 53528 libbio-coordinate-perl_1.7.1-4_all.deb ad549329aac47ebe11cbecca98e11e983915a6d73f873881e3d0c58e70248ad0 5553 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo Files: ae5c8b3a32798ed24486fc9d24a67087 1263 perl optional libbio-coordinate-perl_1.7.1-4.dsc fbc1d527afa9ffdf04d9516360d487f6 2844 perl optional libbio-coordinate-perl_1.7.1-4.debian.tar.xz 9e353a70d43879e2312f2f3ce8959442 53528 perl optional libbio-coordinate-perl_1.7.1-4_all.deb 7a7397babeaa4d72faf45a25d900b982 5553 perl optional libbio-coordinate-perl_1.7.1-4_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all source Version: 1.7.1-4 Checksums-Md5: ae5c8b3a32798ed24486fc9d24a67087 1263 libbio-coordinate-perl_1.7.1-4.dsc 9e353a70d43879e2312f2f3ce8959442 53528 libbio-coordinate-perl_1.7.1-4_all.deb Checksums-Sha1: 232c1e8a914d41be22d615e24e0935446b4833fe 1263 libbio-coordinate-perl_1.7.1-4.dsc 50bef7734087d3b95417477d71a2169295542ef2 53528 libbio-coordinate-perl_1.7.1-4_all.deb Checksums-Sha256: 69d56fa6e2b7234d16cedb240cc0ed7251cb2820b31f92e3544923e215288558 1263 libbio-coordinate-perl_1.7.1-4.dsc 952193794ed757a3b14584c8db321251e51d056c1d36790eceeb1a71000eee37 53528 libbio-coordinate-perl_1.7.1-4_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Jun 2024 17:22:29 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bioperl (= 1.7.8-1), bsdextrautils (= 2.40.1-7), bsdutils (= 1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.1.0-1), libclass-data-inheritable-perl (= 0.08-3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libexception-class-perl (= 1.45-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256~rc3-7), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-7), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-5), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1606228747" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-coordinate-perl_1.7.1-4_all.deb -------------------------------------- new Debian package, version 2.0. size 53528 bytes: control archive=1524 bytes. 767 bytes, 18 lines control 2443 bytes, 30 lines md5sums Package: libbio-coordinate-perl Version: 1.7.1-4 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 171 Depends: perl:any, bioperl (>= 1.7.1) Breaks: bioperl (<= 1.7.0) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-Coordinate Description: BioPerl modules for working with biological coordinates The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. . Since BioPerl version 1.7 several modules where split into separate projects. This package provides the Bio::Coordinate module for working with biological coordinates. drwxr-xr-x root/root 0 2020-11-24 14:39 ./ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/doc/libbio-coordinate-perl/ -rw-r--r-- root/root 143 2016-12-15 05:02 ./usr/share/doc/libbio-coordinate-perl/README.md -rw-r--r-- root/root 695 2020-11-24 14:39 ./usr/share/doc/libbio-coordinate-perl/changelog.Debian.gz -rw-r--r-- root/root 280 2016-12-15 05:02 ./usr/share/doc/libbio-coordinate-perl/changelog.gz -rw-r--r-- root/root 1062 2020-11-24 14:39 ./usr/share/doc/libbio-coordinate-perl/copyright drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/man/man3/ -rw-r--r-- root/root 1867 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate.3pm.gz -rw-r--r-- root/root 2631 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Chain.3pm.gz -rw-r--r-- root/root 2842 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Collection.3pm.gz -rw-r--r-- root/root 2428 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm.gz -rw-r--r-- root/root 4433 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm.gz -rw-r--r-- root/root 3225 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Graph.3pm.gz -rw-r--r-- root/root 2040 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::MapperI.3pm.gz -rw-r--r-- root/root 2502 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Pair.3pm.gz -rw-r--r-- root/root 2360 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Result.3pm.gz -rw-r--r-- root/root 1639 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm.gz -rw-r--r-- root/root 1637 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Result::Match.3pm.gz -rw-r--r-- root/root 1625 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::ResultI.3pm.gz -rw-r--r-- root/root 2270 2020-11-24 14:39 ./usr/share/man/man3/Bio::Coordinate::Utils.3pm.gz drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 2494 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate.pm drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/perl5/Bio/Coordinate/ -rw-r--r-- root/root 5177 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Chain.pm -rw-r--r-- root/root 10492 2020-11-24 14:39 ./usr/share/perl5/Bio/Coordinate/Collection.pm -rw-r--r-- root/root 6370 2020-11-24 14:39 ./usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm -rw-r--r-- root/root 42089 2020-11-24 14:39 ./usr/share/perl5/Bio/Coordinate/GeneMapper.pm -rw-r--r-- root/root 10553 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Graph.pm -rw-r--r-- root/root 3686 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/MapperI.pm -rw-r--r-- root/root 12043 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Pair.pm -rw-r--r-- root/root 6293 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Result.pm drwxr-xr-x root/root 0 2020-11-24 14:39 ./usr/share/perl5/Bio/Coordinate/Result/ -rw-r--r-- root/root 1974 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Result/Gap.pm -rw-r--r-- root/root 1920 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Result/Match.pm -rw-r--r-- root/root 1865 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/ResultI.pm -rw-r--r-- root/root 7706 2016-12-15 05:02 ./usr/share/perl5/Bio/Coordinate/Utils.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1200 Build-Time: 3 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/libbio-coordinate-perl_1.7.1-4.dsc Machine Architecture: amd64 Package: libbio-coordinate-perl Package-Time: 14 Source-Version: 1.7.1-4 Space: 1200 Status: successful Version: 1.7.1-4 -------------------------------------------------------------------------------- Finished at 2024-06-03T17:22:29Z Build needed 00:00:14, 1200k disk space