sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | libbio-asn1-entrezgene-perl 1.730-3 (amd64) Mon, 03 Jun 2024 17:20:47 +0000 | +==============================================================================+ Package: libbio-asn1-entrezgene-perl Version: 1.730-3 Source Version: 1.730-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-56a7bf65-073c-4747-8961-68b6af5ceb2b' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-asn1-entrezgene-perl_1.730-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-asn1-entrezgene-perl_1.730-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-asn1-entrezgene-perl-Im3Jvl/resolver-AdL25V' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 http://localhost:3142/debian unstable InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB] Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Get:8 http://localhost:3142/debian sid/main Sources T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [22.0 kB] Fetched 571 kB in 2s (259 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: login passwd 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1564 kB of archives. After this operation, 57.3 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.13+dfsg1-5 [590 kB] Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 1564 kB in 0s (76.8 MB/s) (Reading database ... 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Setting up passwd (1:4.13+dfsg1-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-asn1-entrezgene-perl_1.730-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-asn1-entrezgene-perl-Im3Jvl/libbio-asn1-entrezgene-perl-1.730' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-asn1-entrezgene-perl-Im3Jvl' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-cluster-perl, libbio-perl-perl, libtest-most-perl, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, libbio-cluster-perl, libbio-perl-perl, libtest-most-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [734 B] Get:5 copy:/<>/apt_archive ./ Packages [713 B] Fetched 2056 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-cluster-perl libbio-perl-perl libbio-variation-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfakeroot libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu72 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils ucf 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB/26.3 MB of archives. After this operation, 94.2 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.82-1+b1 [99.2 kB] Get:2 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [908 B] Get:3 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.46-1+b3 [13.7 kB] Get:4 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-1+b2 [339 kB] Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:8 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b3 [199 kB] Get:9 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:12 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:13 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:15 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:16 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:19 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:20 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:21 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:22 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:23 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:24 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:27 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:30 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:31 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:32 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3 [670 kB] Get:35 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:36 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:37 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:38 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:40 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:46 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:54 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:58 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:59 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:74 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.6 MB in 0s (128 MB/s) Selecting previously unselected package netbase. (Reading database ... 21765 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:amd64 (0.46-1+b3) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.2.1-3) ... Setting up libxml2:amd64 (2.12.7+dfsg-3) ... Setting up liburi-perl (5.28-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:amd64 (3.82-1+b1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.15.3) ... Setting up libwww-perl (6.77-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-cluster-perl_1.7.3-6 libbio-perl-perl_1.7.8-1 libbio-variation-perl_1.7.5-3 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.1.0-1 libclass-data-inheritable-perl_0.08-3 libclone-perl_0.46-1+b3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.6.2-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhtml-parser-perl_3.82-1+b1 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_6.46-1 libhttp-negotiate-perl_6.01-2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.085-1 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-7 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-1+b2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 liburi-perl_5.28-1 libuuid1_2.40.1-7 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-namespacesupport-perl_1.12-2 libxml-parser-perl_2.47-1+b3 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-twig-perl_1:3.52-3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.2.1-3 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 perl-openssl-defaults_7+b2 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-asn1-entrezgene-perl Binary: libbio-asn1-entrezgene-perl Architecture: all Version: 1.730-3 Maintainer: Debian Perl Group Uploaders: gregor herrmann , Florian Schlichting Homepage: https://metacpan.org/release/Bio-ASN1-EntrezGene Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-asn1-entrezgene-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-asn1-entrezgene-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-cluster-perl , libbio-perl-perl , libtest-most-perl , perl Package-List: libbio-asn1-entrezgene-perl deb perl optional arch=all Checksums-Sha1: 3c67cf7490a81b781a4434f0f6034ad4544fa8e2 157307 libbio-asn1-entrezgene-perl_1.730.orig.tar.gz 193510a918e524591b5fceef1befe115e7e23bfa 3452 libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz Checksums-Sha256: f9e778db705ce5c35ad2798e38a8490b644edfdc14253aa1b74a1f5e79fc6a4b 157307 libbio-asn1-entrezgene-perl_1.730.orig.tar.gz 5e283bc9c3d15ed50f1e9f763af8b14612cfe3854a388e52abbde884722b32c8 3452 libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz Files: 35a135a893e8751a54525482782861d6 157307 libbio-asn1-entrezgene-perl_1.730.orig.tar.gz 7a9fd7652ff64e9cbc3b977ace71c185 3452 libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz Dgit: 65903f8eb48e2fc1f1278bf8fd4eed4d1284b4be debian archive/debian/1.730-3 https://git.dgit.debian.org/libbio-asn1-entrezgene-perl -----BEGIN PGP SIGNATURE----- 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D1E1316E93A760A8104D85FABB3A68018649AA06 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-asn1-entrezgene-perl_1.730-3.dsc: no acceptable signature found dpkg-source: info: extracting libbio-asn1-entrezgene-perl in /<> dpkg-source: info: unpacking libbio-asn1-entrezgene-perl_1.730.orig.tar.gz dpkg-source: info: unpacking libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-asn1-entrezgene-perl_1.730-3 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-asn1-entrezgene-perl_1.730-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-56a7bf65-073c-4747-8961-68b6af5ceb2b SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-asn1-entrezgene-perl dpkg-buildpackage: info: source version 1.730-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by gregor herrmann dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-asn1-entrezgene-perl using existing ./libbio-asn1-entrezgene-perl_1.730.orig.tar.gz dpkg-source: info: building libbio-asn1-entrezgene-perl in libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz dpkg-source: info: building libbio-asn1-entrezgene-perl in libbio-asn1-entrezgene-perl_1.730-3.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::ASN1::EntrezGene Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/SeqIO/entrezgene.pm blib/lib/Bio/SeqIO/entrezgene.pm cp lib/Bio/ASN1/EntrezGene.pm blib/lib/Bio/ASN1/EntrezGene.pm cp lib/Bio/ASN1/Sequence.pm blib/lib/Bio/ASN1/Sequence.pm cp lib/Bio/ASN1/EntrezGene/Indexer.pm blib/lib/Bio/ASN1/EntrezGene/Indexer.pm cp lib/Bio/ASN1/Sequence/Indexer.pm blib/lib/Bio/ASN1/Sequence/Indexer.pm Manifying 5 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..5 ok 1 - Bio/ASN1/EntrezGene.pm loaded ok ok 2 - Bio/ASN1/EntrezGene/Indexer.pm loaded ok ok 3 - Bio/ASN1/Sequence.pm loaded ok ok 4 - Bio/ASN1/Sequence/Indexer.pm loaded ok ok 5 - Bio/SeqIO/entrezgene.pm loaded ok ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/entrezgene.t ........... 1..1427 ok 1 - use Bio::SeqIO::entrezgene; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 - correct number of loops for T3 ok 10 ok 11 - correct number of loops for T4 ok 12 - correct number of loops for T5 ok 13 - correct number of loops for T6 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 - correct number of loops for T7 ok 20 - correct number of loops for T8 ok 21 ok 22 ok 23 ok 24 - correct number of loops for T10 ok 25 - correct number of loops for T11a ok 26 - correct number of loops for T11a ok 27 - correct number of loops for T11a ok 28 - correct number of loops for T11 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - correct number of loops for T12 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 - correct number of loops for T15 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 - correct number of loops for T3 ok 66 ok 67 - correct number of loops for T4 ok 68 - correct number of loops for T5 ok 69 - correct number of loops for T6 ok 70 ok 71 ok 72 ok 73 - correct number of loops for T7 ok 74 - correct number of loops for T8 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 - correct number of loops for T10 ok 132 - correct number of loops for T11a ok 133 - correct number of loops for T11a ok 134 - correct number of loops for T11a ok 135 - correct number of loops for T11 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 - correct number of loops for T15 ok 168 ok 169 ok 170 ok 171 ok 172 - correct number of loops for T3 ok 173 ok 174 - correct number of loops for T4 ok 175 - correct number of loops for T5 ok 176 - correct number of loops for T6 ok 177 - correct number of loops for T7 ok 178 - correct number of loops for T8 ok 179 ok 180 - correct number of loops for T10 ok 181 - correct number of loops for T11a ok 182 - correct number of loops for T11 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 - correct number of loops for T15 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 - correct number of loops for T3 ok 196 ok 197 - correct number of loops for T4 ok 198 - correct number of loops for T5 ok 199 - correct number of loops for T6 ok 200 ok 201 - correct number of loops for T7 ok 202 - correct number of loops for T8 ok 203 ok 204 - correct number of loops for T10 ok 205 - correct number of loops for T11 ok 206 - correct number of loops for T15 ok 207 ok 208 ok 209 ok 210 ok 211 - correct number of loops for T3 ok 212 - correct number of loops for T4 ok 213 - correct number of loops for T5 ok 214 ok 215 - correct number of loops for T6 ok 216 ok 217 - correct number of loops for T7 ok 218 - correct number of loops for T8 ok 219 ok 220 - correct number of loops for T10 ok 221 - correct number of loops for T11 ok 222 - correct number of loops for T15 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 - correct number of loops for T3 ok 229 - correct number of loops for T4 ok 230 - correct number of loops for T5 ok 231 ok 232 - correct number of loops for T6 ok 233 ok 234 - correct number of loops for T7 ok 235 - correct number of loops for T8 ok 236 ok 237 - correct number of loops for T10 ok 238 - correct number of loops for T11 ok 239 - correct number of loops for T15 ok 240 ok 241 ok 242 ok 243 ok 244 - correct number of loops for T3 ok 245 - correct number of loops for T4 ok 246 - correct number of loops for T5 ok 247 ok 248 - correct number of loops for T6 ok 249 ok 250 - correct number of loops for T7 ok 251 - correct number of loops for T8 ok 252 ok 253 - correct number of loops for T10 ok 254 - correct number of loops for T11 ok 255 - correct number of loops for T15 ok 256 ok 257 ok 258 ok 259 ok 260 - correct number of loops for T3 ok 261 - correct number of loops for T4 ok 262 - correct number of loops for T5 ok 263 - correct number of loops for T6 ok 264 - correct number of loops for T7 ok 265 - correct number of loops for T8 ok 266 ok 267 - correct number of loops for T10 ok 268 ok 269 - correct number of loops for T11a ok 270 - correct number of loops for T11a ok 271 - correct number of loops for T11a ok 272 - correct number of loops for T11 ok 273 - correct number of loops for T15 ok 274 ok 275 ok 276 ok 277 ok 278 - correct number of loops for T3 ok 279 ok 280 - correct number of loops for T4 ok 281 - correct number of loops for T5 ok 282 - correct number of loops for T6 ok 283 ok 284 - correct number of loops for T7 ok 285 - correct number of loops for T8 ok 286 ok 287 ok 288 ok 289 ok 290 ok 291 ok 292 ok 293 ok 294 ok 295 ok 296 ok 297 ok 298 ok 299 ok 300 ok 301 ok 302 ok 303 ok 304 ok 305 ok 306 ok 307 ok 308 ok 309 ok 310 ok 311 ok 312 ok 313 ok 314 ok 315 ok 316 ok 317 ok 318 ok 319 ok 320 ok 321 ok 322 ok 323 ok 324 ok 325 ok 326 ok 327 - correct number of loops for T10 ok 328 - correct number of loops for T11a ok 329 - correct number of loops for T11a ok 330 ok 331 - correct number of loops for T11a ok 332 - correct number of loops for T11 ok 333 ok 334 ok 335 ok 336 ok 337 ok 338 ok 339 ok 340 ok 341 ok 342 ok 343 ok 344 ok 345 ok 346 ok 347 ok 348 ok 349 ok 350 ok 351 ok 352 ok 353 ok 354 ok 355 ok 356 ok 357 ok 358 ok 359 ok 360 ok 361 ok 362 ok 363 ok 364 ok 365 ok 366 ok 367 ok 368 ok 369 ok 370 ok 371 ok 372 ok 373 ok 374 ok 375 - correct number of loops for T15 ok 376 ok 377 ok 378 ok 379 ok 380 - correct number of loops for T3 ok 381 - correct number of loops for T4 ok 382 ok 383 - correct number of loops for T5 ok 384 - correct number of loops for T6 ok 385 ok 386 - correct number of loops for T7 ok 387 ok 388 - correct number of loops for T8 ok 389 ok 390 ok 391 ok 392 ok 393 ok 394 ok 395 ok 396 ok 397 ok 398 ok 399 ok 400 ok 401 ok 402 ok 403 ok 404 ok 405 ok 406 ok 407 ok 408 ok 409 ok 410 ok 411 ok 412 ok 413 ok 414 ok 415 ok 416 ok 417 ok 418 ok 419 ok 420 ok 421 ok 422 ok 423 ok 424 ok 425 ok 426 ok 427 ok 428 ok 429 ok 430 ok 431 ok 432 ok 433 ok 434 ok 435 ok 436 ok 437 ok 438 ok 439 ok 440 ok 441 ok 442 ok 443 ok 444 ok 445 ok 446 ok 447 ok 448 ok 449 ok 450 ok 451 ok 452 ok 453 ok 454 ok 455 ok 456 ok 457 ok 458 ok 459 ok 460 ok 461 ok 462 ok 463 ok 464 ok 465 ok 466 - correct number of loops for T10 ok 467 - correct number of loops for T11a ok 468 - correct number of loops for T11a ok 469 - correct number of loops for T11a ok 470 - correct number of loops for T11 ok 471 ok 472 ok 473 ok 474 ok 475 ok 476 ok 477 ok 478 ok 479 ok 480 ok 481 ok 482 ok 483 ok 484 ok 485 ok 486 ok 487 ok 488 ok 489 ok 490 ok 491 ok 492 ok 493 ok 494 ok 495 ok 496 ok 497 ok 498 ok 499 ok 500 ok 501 ok 502 ok 503 ok 504 ok 505 ok 506 ok 507 ok 508 ok 509 ok 510 ok 511 ok 512 ok 513 ok 514 ok 515 ok 516 ok 517 ok 518 ok 519 ok 520 ok 521 ok 522 ok 523 - correct number of loops for T15 ok 524 ok 525 ok 526 ok 527 ok 528 - correct number of loops for T3 ok 529 - correct number of loops for T4 ok 530 - correct number of loops for T5 ok 531 - correct number of loops for T6 ok 532 ok 533 - correct number of loops for T7 ok 534 ok 535 - correct number of loops for T8 ok 536 ok 537 - correct number of loops for T10 ok 538 - correct number of loops for T11a ok 539 - correct number of loops for T11 ok 540 ok 541 - correct number of loops for T15 ok 542 ok 543 ok 544 ok 545 ok 546 - correct number of loops for T3 ok 547 - correct number of loops for T4 ok 548 - correct number of loops for T5 ok 549 - correct number of loops for T6 ok 550 ok 551 ok 552 ok 553 - correct number of loops for T7 ok 554 - correct number of loops for T8 ok 555 ok 556 ok 557 ok 558 ok 559 ok 560 ok 561 ok 562 ok 563 ok 564 ok 565 ok 566 ok 567 ok 568 ok 569 ok 570 ok 571 ok 572 ok 573 ok 574 ok 575 ok 576 ok 577 ok 578 - correct number of loops for T10 ok 579 - correct number of loops for T11a ok 580 - correct number of loops for T11a ok 581 - correct number of loops for T11a ok 582 - correct number of loops for T11 ok 583 ok 584 ok 585 ok 586 ok 587 ok 588 ok 589 ok 590 ok 591 ok 592 ok 593 ok 594 ok 595 ok 596 ok 597 ok 598 ok 599 ok 600 ok 601 ok 602 ok 603 ok 604 ok 605 ok 606 ok 607 ok 608 ok 609 ok 610 ok 611 ok 612 ok 613 ok 614 ok 615 ok 616 ok 617 - correct number of loops for T15 ok 618 ok 619 ok 620 ok 621 ok 622 - correct number of loops for T3 ok 623 - correct number of loops for T4 ok 624 ok 625 - correct number of loops for T5 ok 626 - correct number of loops for T6 ok 627 ok 628 - correct number of loops for T7 ok 629 ok 630 - correct number of loops for T8 ok 631 ok 632 - correct number of loops for T10 ok 633 - correct number of loops for T11a ok 634 - correct number of loops for T11a ok 635 - correct number of loops for T11a ok 636 - correct number of loops for T11 ok 637 ok 638 ok 639 ok 640 ok 641 ok 642 ok 643 ok 644 ok 645 ok 646 ok 647 ok 648 - correct number of loops for T15 ok 649 ok 650 ok 651 ok 652 ok 653 - correct number of loops for T3 ok 654 - correct number of loops for T4 ok 655 ok 656 - correct number of loops for T5 ok 657 - correct number of loops for T6 ok 658 - correct number of loops for T7 ok 659 - correct number of loops for T8 ok 660 ok 661 - correct number of loops for T10 ok 662 - correct number of loops for T11a ok 663 - correct number of loops for T11a ok 664 - correct number of loops for T11a ok 665 - correct number of loops for T11 ok 666 ok 667 ok 668 ok 669 ok 670 ok 671 ok 672 ok 673 ok 674 ok 675 ok 676 ok 677 ok 678 ok 679 ok 680 ok 681 ok 682 ok 683 ok 684 ok 685 ok 686 ok 687 - correct number of loops for T15 ok 688 ok 689 ok 690 ok 691 ok 692 - correct number of loops for T3 ok 693 - correct number of loops for T4 ok 694 - correct number of loops for T5 ok 695 - correct number of loops for T6 ok 696 ok 697 ok 698 - correct number of loops for T7 ok 699 - correct number of loops for T8 ok 700 ok 701 ok 702 ok 703 ok 704 ok 705 - correct number of loops for T10 ok 706 - correct number of loops for T11a ok 707 - correct number of loops for T11a ok 708 - correct number of loops for T11a ok 709 - correct number of loops for T11 ok 710 ok 711 ok 712 ok 713 ok 714 ok 715 ok 716 ok 717 ok 718 ok 719 ok 720 ok 721 ok 722 ok 723 ok 724 ok 725 ok 726 ok 727 ok 728 ok 729 ok 730 ok 731 ok 732 ok 733 ok 734 - correct number of loops for T15 ok 735 ok 736 ok 737 ok 738 ok 739 - correct number of loops for T3 ok 740 - correct number of loops for T4 ok 741 - correct number of loops for T5 ok 742 - correct number of loops for T6 ok 743 - correct number of loops for T7 ok 744 - correct number of loops for T8 ok 745 ok 746 - correct number of loops for T10 ok 747 - correct number of loops for T11 ok 748 - correct number of loops for T15 ok 749 ok 750 ok 751 ok 752 ok 753 - correct number of loops for T3 ok 754 - correct number of loops for T4 ok 755 - correct number of loops for T5 ok 756 - correct number of loops for T6 ok 757 - correct number of loops for T7 ok 758 - correct number of loops for T8 ok 759 ok 760 - correct number of loops for T10 ok 761 - correct number of loops for T11 ok 762 - correct number of loops for T15 ok 763 ok 764 ok 765 ok 766 ok 767 - correct number of loops for T3 ok 768 - correct number of loops for T4 ok 769 ok 770 - correct number of loops for T5 ok 771 - correct number of loops for T6 ok 772 ok 773 ok 774 ok 775 - correct number of loops for T7 ok 776 - correct number of loops for T8 ok 777 ok 778 - correct number of loops for T10 ok 779 - correct number of loops for T11a ok 780 - correct number of loops for T11 ok 781 ok 782 ok 783 ok 784 ok 785 ok 786 ok 787 ok 788 ok 789 ok 790 ok 791 ok 792 - correct number of loops for T15 ok 793 ok 794 ok 795 ok 796 ok 797 ok 798 - correct number of loops for T3 ok 799 - correct number of loops for T4 ok 800 - correct number of loops for T5 ok 801 - correct number of loops for T6 ok 802 - correct number of loops for T7 ok 803 - correct number of loops for T8 ok 804 ok 805 - correct number of loops for T10 ok 806 - correct number of loops for T11 ok 807 - correct number of loops for T15 ok 808 ok 809 ok 810 ok 811 ok 812 - correct number of loops for T3 ok 813 - correct number of loops for T4 ok 814 - correct number of loops for T5 ok 815 - correct number of loops for T6 ok 816 - correct number of loops for T7 ok 817 - correct number of loops for T8 ok 818 ok 819 - correct number of loops for T10 ok 820 - correct number of loops for T11 ok 821 - correct number of loops for T15 ok 822 ok 823 ok 824 ok 825 ok 826 ok 827 - correct number of loops for T3 ok 828 - correct number of loops for T4 ok 829 - correct number of loops for T5 ok 830 - correct number of loops for T6 ok 831 - correct number of loops for T7 ok 832 - correct number of loops for T8 ok 833 ok 834 - correct number of loops for T10 ok 835 - correct number of loops for T11 ok 836 - correct number of loops for T15 ok 837 ok 838 ok 839 ok 840 ok 841 - correct number of loops for T3 ok 842 - correct number of loops for T4 ok 843 - correct number of loops for T5 ok 844 - correct number of loops for T6 ok 845 - correct number of loops for T7 ok 846 - correct number of loops for T8 ok 847 ok 848 - correct number of loops for T10 ok 849 - correct number of loops for T11 ok 850 - correct number of loops for T15 ok 851 ok 852 ok 853 ok 854 ok 855 - correct number of loops for T3 ok 856 - correct number of loops for T4 ok 857 - correct number of loops for T5 ok 858 - correct number of loops for T6 ok 859 - correct number of loops for T7 ok 860 - correct number of loops for T8 ok 861 ok 862 - correct number of loops for T10 ok 863 - correct number of loops for T11 ok 864 - correct number of loops for T15 ok 865 ok 866 ok 867 ok 868 ok 869 - correct number of loops for T3 ok 870 - correct number of loops for T4 ok 871 - correct number of loops for T5 ok 872 - correct number of loops for T6 ok 873 - correct number of loops for T7 ok 874 - correct number of loops for T8 ok 875 ok 876 - correct number of loops for T10 ok 877 - correct number of loops for T11 ok 878 - correct number of loops for T15 ok 879 ok 880 ok 881 ok 882 ok 883 - correct number of loops for T3 ok 884 - correct number of loops for T4 ok 885 - correct number of loops for T5 ok 886 - correct number of loops for T6 ok 887 - correct number of loops for T7 ok 888 - correct number of loops for T8 ok 889 ok 890 - correct number of loops for T10 ok 891 - correct number of loops for T11 ok 892 - correct number of loops for T15 ok 893 ok 894 ok 895 ok 896 ok 897 - correct number of loops for T3 ok 898 - correct number of loops for T4 ok 899 ok 900 - correct number of loops for T5 ok 901 - correct number of loops for T6 ok 902 ok 903 ok 904 ok 905 - correct number of loops for T7 ok 906 - correct number of loops for T8 ok 907 ok 908 ok 909 ok 910 - correct number of loops for T10 ok 911 ok 912 - correct number of loops for T11a ok 913 - correct number of loops for T11 ok 914 ok 915 ok 916 ok 917 ok 918 ok 919 ok 920 ok 921 ok 922 ok 923 ok 924 ok 925 ok 926 ok 927 ok 928 ok 929 ok 930 ok 931 - correct number of loops for T13/14 ok 932 ok 933 ok 934 ok 935 ok 936 ok 937 ok 938 ok 939 ok 940 ok 941 ok 942 ok 943 ok 944 ok 945 ok 946 ok 947 ok 948 ok 949 - correct number of loops for T15 ok 950 ok 951 ok 952 ok 953 ok 954 - correct number of loops for T3 ok 955 - correct number of loops for T4 ok 956 - correct number of loops for T5 ok 957 - correct number of loops for T6 ok 958 - correct number of loops for T7 ok 959 - correct number of loops for T8 ok 960 ok 961 - correct number of loops for T10 ok 962 - correct number of loops for T11 ok 963 - correct number of loops for T15 ok 964 ok 965 ok 966 ok 967 ok 968 - correct number of loops for T3 ok 969 - correct number of loops for T4 ok 970 - correct number of loops for T5 ok 971 - correct number of loops for T6 ok 972 - correct number of loops for T7 ok 973 - correct number of loops for T8 ok 974 ok 975 - correct number of loops for T10 ok 976 - correct number of loops for T11 ok 977 - correct number of loops for T15 ok 978 ok 979 ok 980 ok 981 ok 982 - correct number of loops for T3 ok 983 - correct number of loops for T4 ok 984 - correct number of loops for T5 ok 985 - correct number of loops for T6 ok 986 - correct number of loops for T7 ok 987 - correct number of loops for T8 ok 988 ok 989 - correct number of loops for T10 ok 990 - correct number of loops for T11 ok 991 - correct number of loops for T15 ok 992 ok 993 ok 994 ok 995 ok 996 - correct number of loops for T3 ok 997 - correct number of loops for T4 ok 998 - correct number of loops for T5 ok 999 - correct number of loops for T6 ok 1000 ok 1001 ok 1002 - correct number of loops for T7 ok 1003 - correct number of loops for T8 ok 1004 ok 1005 ok 1006 ok 1007 - correct number of loops for T10 ok 1008 - correct number of loops for T11a ok 1009 - correct number of loops for T11 ok 1010 ok 1011 ok 1012 ok 1013 ok 1014 ok 1015 ok 1016 ok 1017 ok 1018 ok 1019 ok 1020 ok 1021 ok 1022 ok 1023 ok 1024 ok 1025 ok 1026 ok 1027 ok 1028 ok 1029 - correct number of loops for T15 ok 1030 ok 1031 ok 1032 ok 1033 ok 1034 - correct number of loops for T3 ok 1035 - correct number of loops for T4 ok 1036 - correct number of loops for T5 ok 1037 - correct number of loops for T6 ok 1038 ok 1039 - correct number of loops for T7 ok 1040 ok 1041 - correct number of loops for T8 ok 1042 ok 1043 ok 1044 ok 1045 ok 1046 ok 1047 ok 1048 ok 1049 ok 1050 ok 1051 ok 1052 ok 1053 ok 1054 ok 1055 ok 1056 ok 1057 ok 1058 ok 1059 ok 1060 ok 1061 ok 1062 ok 1063 ok 1064 ok 1065 ok 1066 ok 1067 ok 1068 ok 1069 ok 1070 ok 1071 ok 1072 ok 1073 ok 1074 ok 1075 ok 1076 ok 1077 ok 1078 ok 1079 ok 1080 ok 1081 ok 1082 ok 1083 ok 1084 ok 1085 ok 1086 ok 1087 ok 1088 ok 1089 ok 1090 ok 1091 ok 1092 ok 1093 ok 1094 ok 1095 ok 1096 ok 1097 ok 1098 ok 1099 ok 1100 ok 1101 ok 1102 ok 1103 ok 1104 ok 1105 ok 1106 ok 1107 ok 1108 ok 1109 ok 1110 ok 1111 ok 1112 ok 1113 ok 1114 ok 1115 ok 1116 ok 1117 ok 1118 ok 1119 ok 1120 ok 1121 ok 1122 ok 1123 - correct number of loops for T10 ok 1124 - correct number of loops for T11a ok 1125 - correct number of loops for T11 ok 1126 ok 1127 ok 1128 ok 1129 ok 1130 ok 1131 ok 1132 ok 1133 ok 1134 ok 1135 ok 1136 ok 1137 ok 1138 ok 1139 ok 1140 ok 1141 - correct number of loops for T15 ok 1142 ok 1143 ok 1144 ok 1145 ok 1146 ok 1147 - correct number of loops for T3 ok 1148 - correct number of loops for T4 ok 1149 ok 1150 - correct number of loops for T5 ok 1151 ok 1152 - correct number of loops for T6 ok 1153 ok 1154 ok 1155 ok 1156 ok 1157 - correct number of loops for T7 ok 1158 ok 1159 - correct number of loops for T8 ok 1160 ok 1161 - correct number of loops for T10 ok 1162 - correct number of loops for T11a ok 1163 - correct number of loops for T11 ok 1164 ok 1165 ok 1166 ok 1167 ok 1168 ok 1169 ok 1170 ok 1171 ok 1172 ok 1173 ok 1174 ok 1175 ok 1176 - correct number of loops for T15 ok 1177 ok 1178 ok 1179 ok 1180 ok 1181 - correct number of loops for T3 ok 1182 - correct number of loops for T4 ok 1183 - correct number of loops for T5 ok 1184 - correct number of loops for T6 ok 1185 ok 1186 ok 1187 ok 1188 - correct number of loops for T7 ok 1189 ok 1190 - correct number of loops for T8 ok 1191 ok 1192 - correct number of loops for T10 ok 1193 - correct number of loops for T11a ok 1194 - correct number of loops for T11 ok 1195 ok 1196 ok 1197 ok 1198 ok 1199 ok 1200 ok 1201 ok 1202 ok 1203 ok 1204 ok 1205 ok 1206 ok 1207 ok 1208 ok 1209 ok 1210 ok 1211 ok 1212 ok 1213 ok 1214 ok 1215 ok 1216 ok 1217 ok 1218 ok 1219 ok 1220 ok 1221 - correct number of loops for T13/14 ok 1222 ok 1223 ok 1224 ok 1225 ok 1226 ok 1227 ok 1228 ok 1229 ok 1230 ok 1231 - correct number of loops for T15 ok 1232 ok 1233 ok 1234 ok 1235 ok 1236 ok 1237 - correct number of loops for T3 ok 1238 ok 1239 - correct number of loops for T4 ok 1240 ok 1241 - correct number of loops for T5 ok 1242 ok 1243 - correct number of loops for T6 ok 1244 ok 1245 - correct number of loops for T7 ok 1246 ok 1247 - correct number of loops for T8 ok 1248 ok 1249 ok 1250 ok 1251 - correct number of loops for T10 ok 1252 - correct number of loops for T11a ok 1253 - correct number of loops for T11 ok 1254 ok 1255 ok 1256 ok 1257 ok 1258 ok 1259 ok 1260 ok 1261 ok 1262 ok 1263 ok 1264 ok 1265 ok 1266 ok 1267 - correct number of loops for T15 ok 1268 ok 1269 ok 1270 ok 1271 ok 1272 - correct number of loops for T3 ok 1273 - correct number of loops for T4 ok 1274 - correct number of loops for T5 ok 1275 ok 1276 - correct number of loops for T6 ok 1277 ok 1278 ok 1279 - correct number of loops for T7 ok 1280 - correct number of loops for T8 ok 1281 ok 1282 - correct number of loops for T10 ok 1283 - correct number of loops for T11a ok 1284 - correct number of loops for T11a ok 1285 - correct number of loops for T11a ok 1286 - correct number of loops for T11a ok 1287 - correct number of loops for T11 ok 1288 ok 1289 ok 1290 ok 1291 ok 1292 - correct number of loops for T15 ok 1293 ok 1294 ok 1295 ok 1296 ok 1297 - correct number of loops for T3 ok 1298 - correct number of loops for T4 ok 1299 - correct number of loops for T5 ok 1300 - correct number of loops for T6 ok 1301 ok 1302 ok 1303 - correct number of loops for T7 ok 1304 - correct number of loops for T8 ok 1305 ok 1306 - correct number of loops for T10 ok 1307 - correct number of loops for T11a ok 1308 - correct number of loops for T11a ok 1309 - correct number of loops for T11a ok 1310 - correct number of loops for T11a ok 1311 - correct number of loops for T11 ok 1312 ok 1313 ok 1314 ok 1315 ok 1316 - correct number of loops for T15 ok 1317 ok 1318 ok 1319 ok 1320 ok 1321 ok 1322 - correct number of loops for T3 ok 1323 - correct number of loops for T4 ok 1324 - correct number of loops for T5 ok 1325 ok 1326 - correct number of loops for T6 ok 1327 ok 1328 ok 1329 ok 1330 - correct number of loops for T7 ok 1331 - correct number of loops for T8 ok 1332 ok 1333 - correct number of loops for T10 ok 1334 - correct number of loops for T11a ok 1335 - correct number of loops for T11a ok 1336 - correct number of loops for T11a ok 1337 - correct number of loops for T11a ok 1338 - correct number of loops for T11 ok 1339 ok 1340 ok 1341 ok 1342 ok 1343 ok 1344 ok 1345 ok 1346 ok 1347 - correct number of loops for T15 ok 1348 ok 1349 ok 1350 ok 1351 ok 1352 - correct number of loops for T3 ok 1353 - correct number of loops for T4 ok 1354 - correct number of loops for T5 ok 1355 - correct number of loops for T6 ok 1356 ok 1357 ok 1358 - correct number of loops for T7 ok 1359 - correct number of loops for T8 ok 1360 ok 1361 - correct number of loops for T10 ok 1362 ok 1363 - correct number of loops for T11a ok 1364 - correct number of loops for T11a ok 1365 - correct number of loops for T11a ok 1366 - correct number of loops for T11a ok 1367 - correct number of loops for T11 ok 1368 ok 1369 ok 1370 ok 1371 ok 1372 - correct number of loops for T15 ok 1373 ok 1374 ok 1375 ok 1376 ok 1377 ok 1378 - correct number of loops for T3 ok 1379 ok 1380 - correct number of loops for T4 ok 1381 - correct number of loops for T5 ok 1382 - correct number of loops for T6 ok 1383 ok 1384 ok 1385 - correct number of loops for T7 ok 1386 - correct number of loops for T8 ok 1387 ok 1388 - correct number of loops for T10 ok 1389 ok 1390 - correct number of loops for T11a ok 1391 - correct number of loops for T11a ok 1392 - correct number of loops for T11a ok 1393 - correct number of loops for T11a ok 1394 - correct number of loops for T11 ok 1395 ok 1396 ok 1397 ok 1398 ok 1399 - correct number of loops for T15 ok 1400 - looped through correct number of sequences ok 1401 ok 1402 ok 1403 ok 1404 ok 1405 ok 1406 ok 1407 ok 1408 ok 1409 ok 1410 ok 1411 ok 1412 ok 1413 ok 1414 ok 1415 ok 1416 ok 1417 ok 1418 ok 1419 ok 1420 ok 1421 ok 1422 - correct number of loops for T18 ok 1423 ok 1424 ok 1425 ok 1426 ok 1427 ok t/testindexer.t .......... 1..6 # # # Test indexers (Bio::ASN1::EntrezGene::Indexer, Bio::ASN1::Sequence::Indexer) # Indexing and retrieval: # # # First testing gene indexer: ok 1 - An object of class 'Bio::ASN1::EntrezGene::Indexer' isa 'Bio::ASN1::EntrezGene::Indexer' ok 2 - A reference of type 'ARRAY' isa 'ARRAY' ok 3 - correct gene record retrieved # # # Now testing sequence indexer: ok 4 - An object of class 'Bio::ASN1::Sequence::Indexer' isa 'Bio::ASN1::Sequence::Indexer' ok 5 - A reference of type 'ARRAY' isa 'ARRAY' ok 6 - correct sequence record retrieved ok # # # Test parsers (Bio::ASN1::EntrezGene, Bio::ASN1::Sequence), # parsing and method call: # # # First testing gene parser: # # # Now testing sequence parser: t/testparser.t ........... 1..10 ok 1 - use Bio::ASN1::EntrezGene; ok 2 - use Bio::ASN1::Sequence; ok 3 - An object of class 'Bio::ASN1::EntrezGene' isa 'Bio::ASN1::EntrezGene' ok 4 - A reference of type 'ARRAY' isa 'ARRAY' ok 5 - correct geneid format ok 6 - rawdata() call ok 7 - An object of class 'Bio::ASN1::Sequence' isa 'Bio::ASN1::Sequence' ok 8 - A reference of type 'ARRAY' isa 'ARRAY' ok 9 - genbank id format test ok 10 - rawdata() call ok All tests successful. Files=9, Tests=1448, 1 wallclock secs ( 0.08 usr 0.01 sys + 0.99 cusr 0.14 csys = 1.22 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-asn1-entrezgene-perl/ make -j2 install DESTDIR=/<>/debian/libbio-asn1-entrezgene-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 5 pod documents Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/SeqIO/entrezgene.pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene.pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence.pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::SeqIO::entrezgene.3pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence.3pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm Installing /<>/debian/libbio-asn1-entrezgene-perl/usr/share/man/man3/Bio::ASN1::EntrezGene.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-asn1-entrezgene-perl' in '../libbio-asn1-entrezgene-perl_1.730-3_all.deb'. dpkg-genbuildinfo -O../libbio-asn1-entrezgene-perl_1.730-3_amd64.buildinfo dpkg-genchanges -O../libbio-asn1-entrezgene-perl_1.730-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T17:21:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-asn1-entrezgene-perl_1.730-3_amd64.changes: -------------------------------------------------- Format: 1.8 Date: Mon, 04 Mar 2024 21:17:51 +0100 Source: libbio-asn1-entrezgene-perl Binary: libbio-asn1-entrezgene-perl Architecture: source all Version: 1.730-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Perl Group Changed-By: gregor herrmann Description: libbio-asn1-entrezgene-perl - parser for NCBI Entrez Gene and NCBI Sequence records Closes: 1047073 Changes: libbio-asn1-entrezgene-perl (1.730-3) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.6.0, no changes needed. . [ gregor herrmann ] * Remove generated test files via debian/clean. (Closes: #1047073) * Update years of packaging copyright. * Declare compliance with Debian Policy 4.6.2. * Drop old Breaks/Replaces from dependencies. Checksums-Sha1: 13aada5db944ae39a6f2842690fb3f018a8efc2c 1467 libbio-asn1-entrezgene-perl_1.730-3.dsc 83e173c36f57f7e27f454ac86f80e5e7a4d6f0c0 3452 libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz 18faffc1ae3148d4c7fee9ddab4b0a6fa720bae3 46348 libbio-asn1-entrezgene-perl_1.730-3_all.deb 020f191b05a2e8a0708f226ed91fcc9384e0ae6c 6700 libbio-asn1-entrezgene-perl_1.730-3_amd64.buildinfo Checksums-Sha256: 6bed43d1d75e4ef3ccc608c9210c4e096ea38e2d1f383957db828eb826372274 1467 libbio-asn1-entrezgene-perl_1.730-3.dsc 69951074c924066202e12b563c0c896feb18e1aca4c28f065c274b11fa6a5799 3452 libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz 7e6e929f2404402b4047bcd5cbde58c891cda66a278e75a212eb93b62a0f0ffe 46348 libbio-asn1-entrezgene-perl_1.730-3_all.deb 4a09aeb1675ce293d38cb9371b2699d12fa8a1bbbff3e1d7a7df28ff5a17dec5 6700 libbio-asn1-entrezgene-perl_1.730-3_amd64.buildinfo Files: 42f38c1f638c33307c1482ba16b5d319 1467 perl optional libbio-asn1-entrezgene-perl_1.730-3.dsc 1abf9cfd6bea70fac7f621bd21c188ec 3452 perl optional libbio-asn1-entrezgene-perl_1.730-3.debian.tar.xz 95bf62c101abdc314b6dd6722bedf232 46348 perl optional libbio-asn1-entrezgene-perl_1.730-3_all.deb 3a8ff7544acbc8f18f96bcf641f39d7b 6700 perl optional libbio-asn1-entrezgene-perl_1.730-3_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-asn1-entrezgene-perl Binary: libbio-asn1-entrezgene-perl Architecture: all source Version: 1.730-3 Checksums-Md5: 42f38c1f638c33307c1482ba16b5d319 1467 libbio-asn1-entrezgene-perl_1.730-3.dsc 95bf62c101abdc314b6dd6722bedf232 46348 libbio-asn1-entrezgene-perl_1.730-3_all.deb Checksums-Sha1: 13aada5db944ae39a6f2842690fb3f018a8efc2c 1467 libbio-asn1-entrezgene-perl_1.730-3.dsc 18faffc1ae3148d4c7fee9ddab4b0a6fa720bae3 46348 libbio-asn1-entrezgene-perl_1.730-3_all.deb Checksums-Sha256: 6bed43d1d75e4ef3ccc608c9210c4e096ea38e2d1f383957db828eb826372274 1467 libbio-asn1-entrezgene-perl_1.730-3.dsc 7e6e929f2404402b4047bcd5cbde58c891cda66a278e75a212eb93b62a0f0ffe 46348 libbio-asn1-entrezgene-perl_1.730-3_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Jun 2024 17:21:04 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-7), bsdutils (= 1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libbio-cluster-perl (= 1.7.3-6), libbio-perl-perl (= 1.7.8-1), libbio-variation-perl (= 1.7.5-3), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.1.0-1), libclass-data-inheritable-perl (= 0.08-3), libclone-perl (= 0.46-1+b3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.6.2-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhtml-parser-perl (= 3.82-1+b1), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.46-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.085-1), libio-string-perl (= 1.08-4), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-1+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256~rc3-7), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), liburi-perl (= 5.28-1), libuuid1 (= 2.40.1-7), libwww-perl (= 6.77-1), libwww-robotrules-perl (= 6.02-1), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b3), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml-twig-perl (= 1:3.52-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg-3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-5), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl (= 3.2.1-3), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1709583471" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-asn1-entrezgene-perl_1.730-3_all.deb ------------------------------------------- new Debian package, version 2.0. size 46348 bytes: control archive=1380 bytes. 1119 bytes, 24 lines control 1506 bytes, 17 lines md5sums Package: libbio-asn1-entrezgene-perl Version: 1.730-3 Architecture: all Maintainer: Debian Perl Group Installed-Size: 165 Depends: perl:any, libbio-cluster-perl, libbio-perl-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-ASN1-EntrezGene Description: parser for NCBI Entrez Gene and NCBI Sequence records Bio::ASN1::EntrezGene and Bio::ASN1::Sequence are regular expression-based parsers for NCBI Entrez Gene genome databases (). . They parse ASN.1-formatted Entrez Gene records and NCBI sequences, returning data structures that contain all data items from the gene records or the sequence records. . The parser will report error & line number if input data does not conform to the NCBI Entrez Gene genome or NCBI Sequence annotation file format. . Bio::ASN1::Sequence is basically a modified version of the high-performance Bio::ASN1::EntrezGene parser. However this standalone module exists since it is more efficient to keep Sequence-specific code out of EntrezGene.pm. drwxr-xr-x root/root 0 2024-03-04 20:17 ./ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/doc/libbio-asn1-entrezgene-perl/ -rw-r--r-- root/root 961 2024-03-04 20:17 ./usr/share/doc/libbio-asn1-entrezgene-perl/changelog.Debian.gz -rw-r--r-- root/root 1861 2018-09-25 02:31 ./usr/share/doc/libbio-asn1-entrezgene-perl/changelog.gz -rw-r--r-- root/root 1277 2024-03-04 20:17 ./usr/share/doc/libbio-asn1-entrezgene-perl/copyright drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/doc/libbio-asn1-entrezgene-perl/examples/ -rwxr-xr-x root/root 1543 2018-09-25 02:31 ./usr/share/doc/libbio-asn1-entrezgene-perl/examples/indexer_test.pl -rwxr-xr-x root/root 25534 2018-09-25 02:31 ./usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_entrez_gene_example.pl -rwxr-xr-x root/root 712 2018-09-25 02:31 ./usr/share/doc/libbio-asn1-entrezgene-perl/examples/parse_sequence_example.pl -rwxr-xr-x root/root 834 2018-09-25 02:31 ./usr/share/doc/libbio-asn1-entrezgene-perl/examples/regex_parser_test.pl drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/man/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/man/man3/ -rw-r--r-- root/root 4631 2024-03-04 20:17 ./usr/share/man/man3/Bio::ASN1::EntrezGene.3pm.gz -rw-r--r-- root/root 3170 2024-03-04 20:17 ./usr/share/man/man3/Bio::ASN1::EntrezGene::Indexer.3pm.gz -rw-r--r-- root/root 4324 2024-03-04 20:17 ./usr/share/man/man3/Bio::ASN1::Sequence.3pm.gz -rw-r--r-- root/root 2949 2024-03-04 20:17 ./usr/share/man/man3/Bio::ASN1::Sequence::Indexer.3pm.gz -rw-r--r-- root/root 2507 2024-03-04 20:17 ./usr/share/man/man3/Bio::SeqIO::entrezgene.3pm.gz drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/Bio/ASN1/ -rw-r--r-- root/root 20117 2018-09-25 02:31 ./usr/share/perl5/Bio/ASN1/EntrezGene.pm drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/Bio/ASN1/EntrezGene/ -rw-r--r-- root/root 6840 2018-09-25 02:31 ./usr/share/perl5/Bio/ASN1/EntrezGene/Indexer.pm -rw-r--r-- root/root 19999 2018-09-25 02:31 ./usr/share/perl5/Bio/ASN1/Sequence.pm drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/Bio/ASN1/Sequence/ -rw-r--r-- root/root 6369 2018-09-25 02:31 ./usr/share/perl5/Bio/ASN1/Sequence/Indexer.pm drwxr-xr-x root/root 0 2024-03-04 20:17 ./usr/share/perl5/Bio/SeqIO/ -rw-r--r-- root/root 42505 2018-09-25 02:31 ./usr/share/perl5/Bio/SeqIO/entrezgene.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 2084 Build-Time: 3 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/libbio-asn1-entrezgene-perl_1.730-3.dsc Machine Architecture: amd64 Package: libbio-asn1-entrezgene-perl Package-Time: 17 Source-Version: 1.730-3 Space: 2084 Status: successful Version: 1.730-3 -------------------------------------------------------------------------------- Finished at 2024-06-03T17:21:04Z Build needed 00:00:17, 2084k disk space