sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +===============================================================================+ | libbio-alignio-stockholm-perl 1.7.3-2 (amd64) Sun, 15 Sep 2024 14:24:14 +0000 | +===============================================================================+ Package: libbio-alignio-stockholm-perl Version: 1.7.3-2 Source Version: 1.7.3-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-9dadde09-354d-41fa-abba-fa7a2c553e16' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-0kikcF/resolver-SpJ2J1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-alignio-stockholm-perl_1.7.3-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-0kikcF/libbio-alignio-stockholm-perl-1.7.3' with '<>' I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-0kikcF' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, build-essential, fakeroot, perl Filtered Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, build-essential, fakeroot, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [680 B] Get:5 copy:/<>/apt_archive ./ Packages [692 B] Fetched 1981 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libfakeroot libfile-stripnondeterminism-perl libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 23.3 MB of archives. After this operation, 86.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [904 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:39 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.3 MB in 0s (120 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 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libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsub-uplevel-perl_0.2800-3 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-alignio-stockholm-perl Binary: libbio-alignio-stockholm-perl Architecture: all Version: 1.7.3-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-AlignIO-stockholm Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-alignio-stockholm-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-alignio-stockholm-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl Build-Depends-Indep: perl Package-List: libbio-alignio-stockholm-perl deb perl optional arch=all Checksums-Sha1: 89ca9fbb76d58140f42d80776efbdce958454baa 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz 9b80b333ca155afb28773df1dab39eec5da38f0d 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz Checksums-Sha256: c2699f42341902bb1db2407708141d589d7b40cac4531879d7744147c35500e2 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz f6f3683dc8b27bda0ecfe5cd4ce65bc01911798ed54e29a167fa7928d43cafe8 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz Files: 47361a5c56b1efc8be723c76c342ea0d 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz 6b5bada7af9da7f04f9c73591dcef594 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl5eD04RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGN4xAAmF4QkmTG8izvJqmRL5YXJJTSQxuaR+IS 7NwjtQxTiDOj/Jf5nQ4hAMU5+dI55TNGvRd+Cf3j5JbQRBW7i1tvRzTLMOD/PlfD CUhboORX1kcOdQUdVuNeVxLKFBTvPps0ic0ABjhbGPQFyhdoe3yPmVIkNgOpxOZw Lb5GNtmUIl1EZdRUAum3gaScWacoflW1NjNnrMi8d2Uq3c1lDjG25pdvS1BVKsmD E7rcXzz/3p8SjcpX5kEOPHZKTfE23/QmqGmOvg3tZt2DJ40ig/JHOVipCOG1c914 q4e8piis10pS+n9gW3cXoOqdRsYuXXUjHiMml94EO9jOnQh+DunBoHp+bwuFfeIN Xcv98Qmqx/10U/WXJ04mJFT4zkAV4s7WIqRBu6xUGEEAcVL4+WX4hLvkgs1xOs1n je6IP3o7B90sbhd84v3nSlnliMoNfJP3ANDgWmIwpLTBQvWRjJ50o/QZyxoGW3Rt 1qynAQXdQ6oGC6o+vQKChZM0LS4rGhwbwoLFabfoDAQdN5AjOL8Yqps7DZJIFkMz RttwU5fANbUKWXO9sJ8LKMhwHfta0+6LYveGR4BfKJKkSKiyfu14CPLLU8EUhL/b vwzoFLSN3OIkLW6XWyWPYdyPpziwWRMPmw6iKUTXq3NqEgCM7wMJjJBNvb+UI5jC kj0G9yUG5jE= =VF0H -----END PGP SIGNATURE----- gpgv: Signature made Tue Mar 3 08:03:26 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-alignio-stockholm-perl_1.7.3-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-alignio-stockholm-perl in /<> dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-9dadde09-354d-41fa-abba-fa7a2c553e16 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package libbio-alignio-stockholm-perl dpkg-buildpackage: info: source version 1.7.3-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-alignio-stockholm-perl using existing ./libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz dpkg-source: info: building libbio-alignio-stockholm-perl in libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz dpkg-source: info: building libbio-alignio-stockholm-perl in libbio-alignio-stockholm-perl_1.7.3-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::AlignIO::stockholm Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<>' cp lib/Bio/AlignIO/stockholm.pm blib/lib/Bio/AlignIO/stockholm.pm cp lib/Bio/Index/Stockholm.pm blib/lib/Bio/Index/Stockholm.pm Manifying 2 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..2 ok 1 - Bio/AlignIO/stockholm.pm loaded ok ok 2 - Bio/Index/Stockholm.pm loaded ok ok t/AlignIO.t .............. 1..87 ok 1 - use Bio::AlignIO::stockholm; ok 2 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO' ok 3 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 - An object of class 'Bio::Annotation::Comment' isa 'Bio::Annotation::Comment' ok 10 - Stockholm annotation ok 11 - Stockholm annotation ok 12 - stockholm output test ok 13 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 - 'Stockholm annotation' isa 'Bio::Annotation::Reference' ok 21 - Stockholm annotation ok 22 - Stockholm annotation ok 23 - Stockholm annotation ok 24 - Stockholm annotation ok 25 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 26 - Rfam meta data ok 27 - Rfam meta data ok 28 ok 29 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 36 - Rfam meta data ok 37 - Rfam meta data ok 38 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO' ok 39 ok 40 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 41 ok 42 ok 43 ok 44 ok 45 - An object of class 'Bio::Annotation::SimpleValue' isa 'Bio::Annotation::SimpleValue' ok 46 - Pfam annotation ok 47 ok 48 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 49 ok 50 ok 51 ok 52 ok 53 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI' ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI' ok 60 - Pfam aln meta data ok 61 - Pfam aln meta data ok 62 - Pfam aln meta data ok 63 - Pfam aln meta data ok 64 - Pfam aln meta data ok 65 - Pfam aln meta data ok 66 - Pfam seq meta data ok 67 - Pfam seq meta data ok 68 - Pfam seq meta data ok 69 - Pfam seq meta data ok 70 ok 71 - An object of class 'Bio::SeqFeature::Generic' isa 'Bio::SeqFeatureI' ok 72 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::Meta' ok 73 - An object of class 'Bio::Annotation::Target' isa 'Bio::AnnotationI' ok 74 - An object of class 'Bio::Annotation::Target' isa 'Bio::Annotation::DBLink' ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/Index.t ................ 1..4 ok 1 - use Bio::Index::Stockholm; ok 2 - An object of class 'Bio::Index::Stockholm' isa 'Bio::Index::Stockholm' ok 3 ok 4 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign' ok All tests successful. Files=7, Tests=93, 1 wallclock secs ( 0.04 usr 0.00 sys + 0.45 cusr 0.08 csys = 0.57 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-alignio-stockholm-perl/ make -j2 install DESTDIR=/<>/debian/libbio-alignio-stockholm-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 2 pod documents Installing /<>/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/Index/Stockholm.pm Installing /<>/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/AlignIO/stockholm.pm Installing /<>/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::AlignIO::stockholm.3pm Installing /<>/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::Index::Stockholm.3pm make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-alignio-stockholm-perl' in '../libbio-alignio-stockholm-perl_1.7.3-2_all.deb'. dpkg-genbuildinfo -O../libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo dpkg-genchanges -O../libbio-alignio-stockholm-perl_1.7.3-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T14:24:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libbio-alignio-stockholm-perl_1.7.3-2_amd64.changes: ---------------------------------------------------- Format: 1.8 Date: Tue, 03 Mar 2020 09:00:01 +0100 Source: libbio-alignio-stockholm-perl Binary: libbio-alignio-stockholm-perl Architecture: source all Version: 1.7.3-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-alignio-stockholm-perl - stockholm sequence input/output stream Closes: 952747 Changes: libbio-alignio-stockholm-perl (1.7.3-2) unstable; urgency=medium . * Team upload. * Add missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3) Closes: #952747 * Add salsa-ci file (routine-update) Checksums-Sha1: 94b0bc10a10314053f2267775515556b20d31692 1376 libbio-alignio-stockholm-perl_1.7.3-2.dsc a1ba6cf1afeb8d2220ed728f7498197f2fc88af0 1788 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz 00b45c2ca56c653d33c056bfeb8c4a4d672a4e13 22536 libbio-alignio-stockholm-perl_1.7.3-2_all.deb 9a277716e0d2a101dc57bb08b2e3166386c6ee72 5692 libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo Checksums-Sha256: f57e93117188637f5383f4c688e3c22f106ec25c43a441f2b229fd858c59ba70 1376 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1.0 Source: libbio-alignio-stockholm-perl Binary: libbio-alignio-stockholm-perl Architecture: all source Version: 1.7.3-2 Checksums-Md5: 79b18f9e0f0dcfe57d84197e708ae054 1376 libbio-alignio-stockholm-perl_1.7.3-2.dsc dea3e44978c0ce8d5e483a142a8cb3cf 22536 libbio-alignio-stockholm-perl_1.7.3-2_all.deb Checksums-Sha1: 94b0bc10a10314053f2267775515556b20d31692 1376 libbio-alignio-stockholm-perl_1.7.3-2.dsc 00b45c2ca56c653d33c056bfeb8c4a4d672a4e13 22536 libbio-alignio-stockholm-perl_1.7.3-2_all.deb Checksums-Sha256: f57e93117188637f5383f4c688e3c22f106ec25c43a441f2b229fd858c59ba70 1376 libbio-alignio-stockholm-perl_1.7.3-2.dsc 8ef917aa27ff82ec9c6c4d10e9f03e46cf5abccd1e3126a72810b51eda9c70c8 22536 libbio-alignio-stockholm-perl_1.7.3-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 14:24:29 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), 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gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcapture-tiny-perl (= 0.48-2), libcc1-0 (= 14.2.0-4), libclass-data-inheritable-perl (= 0.08-3), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libexception-class-perl (= 1.45-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-4), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 256.6-1), libtest-deep-perl (= 1.204-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1583222401" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbio-alignio-stockholm-perl_1.7.3-2_all.deb --------------------------------------------- new Debian package, version 2.0. size 22536 bytes: control archive=888 bytes. 665 bytes, 16 lines control 591 bytes, 7 lines md5sums Package: libbio-alignio-stockholm-perl Version: 1.7.3-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 66 Depends: perl:any, libbio-perl-perl Breaks: libbio-perl-perl (<< 1.7.3) Replaces: libbio-perl-perl (<< 1.7.3) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-AlignIO-stockholm Description: stockholm sequence input/output stream Indexes Stockholm format alignments such as those from Pfam and Rfam. Returns raw stream data using the ID or a Bio::SimpleAlign object (via Bio::AlignIO). . Bio::AlignIO::stockholm also allows for ID parsing using a callback: drwxr-xr-x root/root 0 2020-03-03 08:00 ./ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/ -rw-r--r-- root/root 305 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/changelog.Debian.gz -rw-r--r-- root/root 166 2018-09-25 00:13 ./usr/share/doc/libbio-alignio-stockholm-perl/changelog.gz -rw-r--r-- root/root 1160 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/copyright drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/man/man3/ -rw-r--r-- root/root 4237 2020-03-03 08:00 ./usr/share/man/man3/Bio::AlignIO::stockholm.3pm.gz -rw-r--r-- root/root 4631 2020-03-03 08:00 ./usr/share/man/man3/Bio::Index::Stockholm.3pm.gz drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/perl5/Bio/AlignIO/ -rw-r--r-- root/root 26826 2018-09-25 00:13 ./usr/share/perl5/Bio/AlignIO/stockholm.pm drwxr-xr-x root/root 0 2020-03-03 08:00 ./usr/share/perl5/Bio/Index/ -rw-r--r-- root/root 12966 2018-09-25 00:13 ./usr/share/perl5/Bio/Index/Stockholm.pm +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 684 Build-Time: 3 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/libbio-alignio-stockholm-perl_1.7.3-2.dsc Machine Architecture: amd64 Package: libbio-alignio-stockholm-perl Package-Time: 15 Source-Version: 1.7.3-2 Space: 684 Status: successful Version: 1.7.3-2 -------------------------------------------------------------------------------- Finished at 2024-09-15T14:24:29Z Build needed 00:00:15, 684k disk space