sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk

+===============================================================================+
| libbio-alignio-stockholm-perl 1.7.3-2 (amd64) Mon, 03 Jun 2024 17:20:32 +0000 |
+===============================================================================+

Package: libbio-alignio-stockholm-perl
Version: 1.7.3-2
Source Version: 1.7.3-2
Distribution: perl-5.40-throwaway
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: full

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-525bd82e-e8d8-46a3-8a03-cf7f58f73bd5' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64
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I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64'.

Finished processing commands.
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I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-SHa4Fq/resolver-b6bBFd' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B]
Get:2 http://localhost:3142/debian unstable InRelease [198 kB]
Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B]
Get:3 http://localhost:3142/debian sid InRelease [198 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:5 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 Packages T-2024-06-03-1404.32-F-2024-06-03-0205.12.pdiff [25.4 kB]
Get:7 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB]
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2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:2 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.13+dfsg1-5 [974 kB]
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| Fetch source files                                                           |
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Local sources
-------------

/srv/debomatic/incoming/libbio-alignio-stockholm-perl_1.7.3-2.dsc exists in /srv/debomatic/incoming; copying to chroot
I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-SHa4Fq/libbio-alignio-stockholm-perl-1.7.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/libbio-alignio-stockholm-perl-SHa4Fq' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, build-essential, fakeroot, perl
Filtered Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl, build-essential, fakeroot, perl
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
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Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base
  groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl
  libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl
  libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64
  libexception-class-perl libfakeroot libfile-stripnondeterminism-perl
  libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1
  libsub-uplevel-perl libtest-deep-perl libtest-differences-perl
  libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
  libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl
Recommended packages:
  curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run
  | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
  libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
  libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
  libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
  libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
  libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
  libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
  libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
  libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
  libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl
  | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl
  libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils debhelper
  dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base
  groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl
  libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl
  libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64
  libexception-class-perl libfakeroot libfile-stripnondeterminism-perl
  libicu72 libio-string-perl libmagic-mgc libmagic1t64 libpipeline1
  libsub-uplevel-perl libtest-deep-perl libtest-differences-perl
  libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl
  libtool libuchardet0 libxml2 m4 man-db po-debconf
  sbuild-build-depends-main-dummy sensible-utils
0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
Need to get 22.5 MB of archives.
After this operation, 84.3 MB of additional disk space will be used.
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Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
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Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB]
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Get:29 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
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Get:33 http://localhost:3142/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B]
Get:39 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB]
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Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-3) ...
Setting up libfakeroot:amd64 (1.34-1) ...
Setting up libelf1t64:amd64 (0.191-1+b1) ...
Setting up fakeroot (1.34-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libio-string-perl (1.08-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libclass-data-inheritable-perl (0.08-3) ...
Setting up libtext-diff-perl (1.45-2) ...
Setting up autopoint (0.21-14) ...
Setting up autoconf (2.71-3) ...
Setting up libcapture-tiny-perl (0.48-2) ...
Setting up dwz (0.15-1+b1) ...
Setting up libdata-stag-perl (0.14-3) ...
Setting up sensible-utils (0.0.22) ...
Setting up libuchardet0:amd64 (0.0.8-1+b1) ...
Setting up libsub-uplevel-perl (0.2800-3) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libbio-perl-perl (1.7.8-1) ...
Setting up libxml2:amd64 (2.12.7+dfsg-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.21-14+b1) ...
Setting up libtool (2.4.7-7) ...
Setting up libtest-warn-perl (0.37-2) ...
Setting up libtest-differences-perl (0.71-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libtest-exception-perl (0.43-3) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-4) ...
Setting up libtest-most-perl (0.38-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.12.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.15.3) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.38-12) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64)
Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1
Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libbio-perl-perl_1.7.8-1 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcapture-tiny-perl_0.48-2 libcc1-0_14.1.0-1 libclass-data-inheritable-perl_0.08-3 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libexception-class-perl_1.45-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libio-string-perl_1.08-4 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-7 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtest-deep-perl_1.204-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 libuuid1_2.40.1-7 libxml2_2.12.7+dfsg-3 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-5 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.13+dfsg1-5 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: libbio-alignio-stockholm-perl
Binary: libbio-alignio-stockholm-perl
Architecture: all
Version: 1.7.3-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <michael.crusoe@gmail.com>
Homepage: https://metacpan.org/release/Bio-AlignIO-stockholm
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/libbio-alignio-stockholm-perl
Vcs-Git: https://salsa.debian.org/med-team/libbio-alignio-stockholm-perl.git
Testsuite: autopkgtest-pkg-perl
Build-Depends: debhelper-compat (= 12), libbio-perl-perl, libtest-most-perl
Build-Depends-Indep: perl
Package-List:
 libbio-alignio-stockholm-perl deb perl optional arch=all
Checksums-Sha1:
 89ca9fbb76d58140f42d80776efbdce958454baa 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz
 9b80b333ca155afb28773df1dab39eec5da38f0d 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
Checksums-Sha256:
 c2699f42341902bb1db2407708141d589d7b40cac4531879d7744147c35500e2 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz
 f6f3683dc8b27bda0ecfe5cd4ce65bc01911798ed54e29a167fa7928d43cafe8 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
Files:
 47361a5c56b1efc8be723c76c342ea0d 37596 libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz
 6b5bada7af9da7f04f9c73591dcef594 1780 libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz

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gpgv: Signature made Tue Mar  3 08:03:26 2020 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libbio-alignio-stockholm-perl_1.7.3-2.dsc: no acceptable signature found
dpkg-source: info: extracting libbio-alignio-stockholm-perl in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz
dpkg-source: info: unpacking libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz

Check disk space
----------------

Sufficient free space for build

+------------------------------------------------------------------------------+
| Starting Timed Build Commands                                                |
+------------------------------------------------------------------------------+


/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64
--------------------------------------------------------------------------------------------------------------------------------------


I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-alignio-stockholm-perl_1.7.3-2 perl-5.40-throwaway amd64'.

Finished processing commands.
--------------------------------------------------------------------------------

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LC_ALL=C.UTF-8
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
LOGNAME=debomatic
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic
SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic
SCHROOT_COMMAND=env
SCHROOT_GID=110
SCHROOT_GROUP=sbuild
SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-525bd82e-e8d8-46a3-8a03-cf7f58f73bd5
SCHROOT_UID=1002
SCHROOT_USER=debomatic
SHELL=/bin/sh
USER=debomatic

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz
dpkg-buildpackage: info: source package libbio-alignio-stockholm-perl
dpkg-buildpackage: info: source version 1.7.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source -Zxz --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean
   dh_clean
 dpkg-source -Zxz -b .
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building libbio-alignio-stockholm-perl using existing ./libbio-alignio-stockholm-perl_1.7.3.orig.tar.gz
dpkg-source: info: building libbio-alignio-stockholm-perl in libbio-alignio-stockholm-perl_1.7.3-2.debian.tar.xz
dpkg-source: info: building libbio-alignio-stockholm-perl in libbio-alignio-stockholm-perl_1.7.3-2.dsc
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
	/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro"
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::AlignIO::stockholm
Writing MYMETA.yml and MYMETA.json
   dh_auto_build
	make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp lib/Bio/Index/Stockholm.pm blib/lib/Bio/Index/Stockholm.pm
cp lib/Bio/AlignIO/stockholm.pm blib/lib/Bio/AlignIO/stockholm.pm
Manifying 2 pod documents
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test
	make -j2 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ........... 
1..2
ok 1 - Bio/AlignIO/stockholm.pm loaded ok
ok 2 - Bio/Index/Stockholm.pm loaded ok
ok
t/AlignIO.t .............. 
1..87
ok 1 - use Bio::AlignIO::stockholm;
ok 2 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO'
ok 3 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9 - An object of class 'Bio::Annotation::Comment' isa 'Bio::Annotation::Comment'
ok 10 - Stockholm annotation
ok 11 - Stockholm annotation
ok 12 - stockholm output test
ok 13 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20 - 'Stockholm annotation' isa 'Bio::Annotation::Reference'
ok 21 - Stockholm annotation
ok 22 - Stockholm annotation
ok 23 - Stockholm annotation
ok 24 - Stockholm annotation
ok 25 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI'
ok 26 - Rfam meta data
ok 27 - Rfam meta data
ok 28
ok 29 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI'
ok 36 - Rfam meta data
ok 37 - Rfam meta data
ok 38 - An object of class 'Bio::AlignIO::stockholm' isa 'Bio::AlignIO'
ok 39
ok 40 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 41
ok 42
ok 43
ok 44
ok 45 - An object of class 'Bio::Annotation::SimpleValue' isa 'Bio::Annotation::SimpleValue'
ok 46 - Pfam annotation
ok 47
ok 48 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 49
ok 50
ok 51
ok 52
ok 53 - An object of class 'Bio::SimpleAlign' isa 'Bio::Align::AlignI'
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::MetaI'
ok 60 - Pfam aln meta data
ok 61 - Pfam aln meta data
ok 62 - Pfam aln meta data
ok 63 - Pfam aln meta data
ok 64 - Pfam aln meta data
ok 65 - Pfam aln meta data
ok 66 - Pfam seq meta data
ok 67 - Pfam seq meta data
ok 68 - Pfam seq meta data
ok 69 - Pfam seq meta data
ok 70
ok 71 - An object of class 'Bio::SeqFeature::Generic' isa 'Bio::SeqFeatureI'
ok 72 - An object of class 'Bio::Seq::Meta' isa 'Bio::Seq::Meta'
ok 73 - An object of class 'Bio::Annotation::Target' isa 'Bio::AnnotationI'
ok 74 - An object of class 'Bio::Annotation::Target' isa 'Bio::Annotation::DBLink'
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/Index.t ................ 
1..4
ok 1 - use Bio::Index::Stockholm;
ok 2 - An object of class 'Bio::Index::Stockholm' isa 'Bio::Index::Stockholm'
ok 3
ok 4 - An object of class 'Bio::SimpleAlign' isa 'Bio::SimpleAlign'
ok
All tests successful.
Files=7, Tests=93,  0 wallclock secs ( 0.03 usr  0.00 sys +  0.42 cusr  0.10 csys =  0.55 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/libbio-alignio-stockholm-perl/
	make -j2 install DESTDIR=/<<PKGBUILDDIR>>/debian/libbio-alignio-stockholm-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Manifying 2 pod documents
Installing /<<PKGBUILDDIR>>/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/Index/Stockholm.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-alignio-stockholm-perl/usr/share/perl5/Bio/AlignIO/stockholm.pm
Installing /<<PKGBUILDDIR>>/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::AlignIO::stockholm.3pm
Installing /<<PKGBUILDDIR>>/debian/libbio-alignio-stockholm-perl/usr/share/man/man3/Bio::Index::Stockholm.3pm
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'libbio-alignio-stockholm-perl' in '../libbio-alignio-stockholm-perl_1.7.3-2_all.deb'.
 dpkg-genbuildinfo -O../libbio-alignio-stockholm-perl_1.7.3-2_amd64.buildinfo
 dpkg-genchanges -O../libbio-alignio-stockholm-perl_1.7.3-2_amd64.changes
dpkg-genchanges: info: not including original source code in upload
 dpkg-source -Zxz --after-build .
dpkg-buildpackage: info: binary and diff upload (original source NOT included)
--------------------------------------------------------------------------------
Build finished at 2024-06-03T17:20:45Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


libbio-alignio-stockholm-perl_1.7.3-2_amd64.changes:
----------------------------------------------------

Format: 1.8
Date: Tue, 03 Mar 2020 09:00:01 +0100
Source: libbio-alignio-stockholm-perl
Binary: libbio-alignio-stockholm-perl
Architecture: source all
Version: 1.7.3-2
Distribution: perl-5.40-throwaway
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 libbio-alignio-stockholm-perl - stockholm sequence input/output stream
Closes: 952747
Changes:
 libbio-alignio-stockholm-perl (1.7.3-2) unstable; urgency=medium
 .
   * Team upload.
   * Add missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3)
     Closes: #952747
   * Add salsa-ci file (routine-update)
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+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: libbio-alignio-stockholm-perl
Binary: libbio-alignio-stockholm-perl
Architecture: all source
Version: 1.7.3-2
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Mon, 03 Jun 2024 17:20:45 +0000
Build-Path: /<<PKGBUILDDIR>>
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 merged-usr-via-aliased-dirs
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 DEB_BUILD_OPTIONS="parallel=2"
 LANG="en_GB.UTF-8"
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 LC_COLLATE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 SOURCE_DATE_EPOCH="1583222401"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libbio-alignio-stockholm-perl_1.7.3-2_all.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 22536 bytes: control archive=888 bytes.
     665 bytes,    16 lines      control
     591 bytes,     7 lines      md5sums
 Package: libbio-alignio-stockholm-perl
 Version: 1.7.3-2
 Architecture: all
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 66
 Depends: perl:any, libbio-perl-perl
 Breaks: libbio-perl-perl (<< 1.7.3)
 Replaces: libbio-perl-perl (<< 1.7.3)
 Section: perl
 Priority: optional
 Homepage: https://metacpan.org/release/Bio-AlignIO-stockholm
 Description: stockholm sequence input/output stream
  Indexes Stockholm format alignments such as those from Pfam and Rfam. Returns
  raw stream data using the ID or a Bio::SimpleAlign object (via Bio::AlignIO).
  .
  Bio::AlignIO::stockholm also allows for ID parsing using a callback:

drwxr-xr-x root/root         0 2020-03-03 08:00 ./
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/
-rw-r--r-- root/root       305 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/changelog.Debian.gz
-rw-r--r-- root/root       166 2018-09-25 00:13 ./usr/share/doc/libbio-alignio-stockholm-perl/changelog.gz
-rw-r--r-- root/root      1160 2020-03-03 08:00 ./usr/share/doc/libbio-alignio-stockholm-perl/copyright
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/man/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/man/man3/
-rw-r--r-- root/root      4237 2020-03-03 08:00 ./usr/share/man/man3/Bio::AlignIO::stockholm.3pm.gz
-rw-r--r-- root/root      4631 2020-03-03 08:00 ./usr/share/man/man3/Bio::Index::Stockholm.3pm.gz
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/perl5/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/perl5/Bio/
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/perl5/Bio/AlignIO/
-rw-r--r-- root/root     26826 2018-09-25 00:13 ./usr/share/perl5/Bio/AlignIO/stockholm.pm
drwxr-xr-x root/root         0 2020-03-03 08:00 ./usr/share/perl5/Bio/Index/
-rw-r--r-- root/root     12966 2018-09-25 00:13 ./usr/share/perl5/Bio/Index/Stockholm.pm


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: full
Build-Space: 684
Build-Time: 3
Distribution: perl-5.40-throwaway
Host Architecture: amd64
Install-Time: 5
Job: /srv/debomatic/incoming/libbio-alignio-stockholm-perl_1.7.3-2.dsc
Machine Architecture: amd64
Package: libbio-alignio-stockholm-perl
Package-Time: 13
Source-Version: 1.7.3-2
Space: 684
Status: successful
Version: 1.7.3-2
--------------------------------------------------------------------------------
Finished at 2024-06-03T17:20:45Z
Build needed 00:00:13, 684k disk space