sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | kmer 0~20150903+r2013-8 (amd64) Sun, 04 Aug 2024 03:03:19 +0000 | +==============================================================================+ Package: kmer Version: 0~20150903+r2013-8 Source Version: 0~20150903+r2013-8 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-90ce4fcc-56d0-4bb7-87bf-fb69474e25be' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup kmer_0~20150903+r2013-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup kmer_0~20150903+r2013-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/kmer-BWD4Xj/resolver-tdOPAK' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://deb.debian.org/debian unstable InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-04-0206.27-F-2024-08-04-0206.27.pdiff [18.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-08-04-0206.27-F-2024-08-04-0206.27.pdiff [18.6 kB] Get:5 http://localhost:3142/debian sid InRelease [198 kB] Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://localhost:3142/debian sid/main Sources T-2024-08-04-0206.27-F-2024-08-04-0206.27.pdiff [16.7 kB] Get:7 http://localhost:3142/debian sid/main Sources T-2024-08-04-0206.27-F-2024-08-04-0206.27.pdiff [16.7 kB] Fetched 559 kB in 6s (98.8 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/kmer_0~20150903+r2013-8.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/kmer-BWD4Xj/kmer-0~20150903+r2013' with '<>' I: NOTICE: Log filtering will replace 'build/kmer-BWD4Xj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [650 B] Get:5 copy:/<>/apt_archive ./ Packages [682 B] Fetched 1941 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-dev python3.12-minimal sensible-utils tzdata zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python3 python3-dev python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy sensible-utils tzdata zlib1g-dev 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 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unstable/main amd64 python3-setuptools all 70.3.0-2 [504 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20240603 [109 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.2-1 [155 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.3.7-4 [154 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.4-3 [2114 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.4-3 [5077 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.12.4-1 [9736 B] Get:56 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.4-3 [499 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.12.4-1 [26.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.0 MB in 0s (144 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.4-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.4-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.4-3_amd64.deb ... Unpacking python3.12-minimal (3.12.4-3) ... Setting up libpython3.12-minimal:amd64 (3.12.4-3) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.12-minimal (3.12.4-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 23286 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.4-1_amd64.deb ... Unpacking python3-minimal (3.12.4-1) ... Selecting previously unselected package media-types. 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Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Aug 4 03:03:35 UTC 2024. Universal Time is now: Sun Aug 4 03:03:35 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:amd64 (2.6.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libpython3.12-stdlib:amd64 (3.12.4-3) ... Setting up libtool (2.4.7-7) ... Setting up python3.12 (3.12.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libpython3.12t64:amd64 (3.12.4-3) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (7.3.7-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3-stdlib:amd64 (3.12.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.12.4-1) ... Setting up libpython3.12-dev:amd64 (3.12.4-3) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.12-dev (3.12.4-3) ... Setting up python3-pkg-resources (70.3.0-2) ... Setting up libpython3-dev:amd64 (3.12.4-1) ... Setting up python3-setuptools (70.3.0-2) ... Setting up debhelper (13.16) ... Setting up dh-exec (0.30) ... Setting up python3-dev (3.12.4-1) ... Setting up dh-python (6.20240603) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-exec_0.30 dh-python_6.20240603 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 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Hash: SHA256 Format: 3.0 (quilt) Source: kmer Binary: kmer, libkmer-dev, meryl, libmeryl-dev, leaff, sim4db, atac, kmer-examples Architecture: any all Version: 0~20150903+r2013-8 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: http://kmer.sourceforge.net Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/kmer Vcs-Git: https://salsa.debian.org/med-team/kmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), dh-exec, dh-python, python3-dev Package-List: atac deb science optional arch=any kmer deb science optional arch=all kmer-examples deb science optional arch=all leaff deb science optional arch=any libkmer-dev deb libdevel optional arch=any libmeryl-dev deb libdevel optional arch=any meryl deb science optional arch=any sim4db deb science optional arch=any Checksums-Sha1: 6da7324491e761437f27207f0b9135d767452e7a 1251653 kmer_0~20150903+r2013.orig.tar.gz 195df8e3c6a695c6ae3ffa739f645c446b26603a 2379688 kmer_0~20150903+r2013-8.debian.tar.xz Checksums-Sha256: 8fd9c289244e69e38bb7709f3523d39edf1c2ced2cbcc687fcf00ecfca78ea47 1251653 kmer_0~20150903+r2013.orig.tar.gz f57681fccd59688d5e9707891ca7b049929e33f758da648c17df4acd7c4dc442 2379688 kmer_0~20150903+r2013-8.debian.tar.xz Files: 30b66a10ddc64022509dd8b85425880f 1251653 kmer_0~20150903+r2013.orig.tar.gz 24534875712ad4baf5abefe3e48ff9c7 2379688 kmer_0~20150903+r2013-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7CQYUOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGbFxAAiZIWzki9jdU/pjzKdXtr5N2teGeWJzX0lg9C LuYOwJzLJ7S554ql+EsgFwteDvSs7deL3ndi51MuUY+/6BoCWXRde0D+m5rZp2B1 w2yADadOvbmkMCf1d1bsJcTsgEQLCu2oZB+VtXe9Suet718MtfE7Q9fBcZRXp5+l xkw5nX0+AH8KZgDZePIRPjKNrTijXVIKhX8jn7JhJwDt5hNb577Cb4SBs+nchvae mPTMem0saU24ZxS6QSaC2Ss1tjcV023r9b3YaHS0h2gVnmSY5Ur/DE2qFmCv9fCk mnVHA7qRq0IwRcuw450DCZC9MsjIYtALvIVKEUrCgoE4dPSgSivKAmSAMGpWUVXF lnQ1ZgmeopNRoDQ3Apb4koSrWTL5f8jV1NUcyV1L9YvBqv35XLNC56tC0HfODM/E 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dpkg-source: info: applying spelling.patch dpkg-source: info: applying linux-cflags.patch dpkg-source: info: applying fix_wrong_evaluation_order.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network kmer_0~20150903+r2013-8 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network kmer_0~20150903+r2013-8 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-90ce4fcc-56d0-4bb7-87bf-fb69474e25be SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package kmer dpkg-buildpackage: info: source version 0~20150903+r2013-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Antoni Villalonga dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make real-clean make[2]: Entering directory '/<>' rm -f ESTmapper/*.o ESTmapper/mergeCounts ESTmapper/terminate ESTmapper/Make.depends ESTmapper/mergeCounts.C.d ESTmapper/terminate.C.d ESTmapper/mergeCounts ESTmapper/terminate rm -f atac-driver/libatac/*.o atac-driver/libatac/*~ atac-driver/libatac/libatac.a atac-driver/libatac/Make.depends atac-driver/libatac/atacFeature.C.d atac-driver/libatac/atacFeatureList.C.d atac-driver/libatac/atacFile.C.d atac-driver/libatac/atacFileStreamMerge.C.d atac-driver/libatac/atacMatch.C.d atac-driver/libatac/atacMatchList.C.d atac-driver/libatac/atacMatchOrder.C.d rm -f atac-driver/alignOverlap/*.o atac-driver/alignOverlap/*~ atac-driver/alignOverlap/core atac-driver/alignOverlap/overlap-process1.C atac-driver/alignOverlap/overlap-process2.C atac-driver/alignOverlap/overlap atac-driver/alignOverlap/Make.depends atac-driver/alignOverlap/overlap.C.d atac-driver/alignOverlap/overlap-sort.C.d atac-driver/alignOverlap/overlap-printAnno.C.d atac-driver/alignOverlap/overlap-find.C.d rm -f atac-driver/gapShifter/*.o atac-driver/gapShifter/*~ atac-driver/gapShifter/core atac-driver/gapShifter/gapShifter atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/correctGaps atac-driver/gapShifter/testAtac atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/Make.depends atac-driver/gapShifter/gapShifter.C.d atac-driver/gapShifter/extractSequence.C.d atac-driver/gapShifter/extractUnmapped.C.d atac-driver/gapShifter/coalesceMatches.C.d atac-driver/gapShifter/correctGaps.C.d atac-driver/gapShifter/testAtac.C.d atac-driver/gapShifter/cleanAtac.C.d atac-driver/gapShifter/projectFeatures.C.d rm -f atac-driver/lengthFilter/*.o atac-driver/lengthFilter/*~ atac-driver/lengthFilter/core atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/Make.depends atac-driver/lengthFilter/lengthFilter.C.d rm -f atac-driver/matchExtender/*.o atac-driver/matchExtender/*~ atac-driver/matchExtender/core atac-driver/matchExtender/matchExtender atac-driver/matchExtender/Make.depends atac-driver/matchExtender/matchExtender.C.d atac-driver/matchExtender/matchExtender-dump.C.d atac-driver/matchExtender/matchExtender-func.C.d rm -f atac-driver/mismatchCounter/*.o atac-driver/mismatchCounter/*~ atac-driver/mismatchCounter/core atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/Make.depends atac-driver/mismatchCounter/mismatchCounter.C.d rm -f atac-driver/statsGenerator/*.o atac-driver/statsGenerator/*~ atac-driver/statsGenerator/core atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/Make.depends atac-driver/statsGenerator/statsGenerator.C.d rm -f atac-driver/uniqueFilter/*.o atac-driver/uniqueFilter/*~ atac-driver/uniqueFilter/core atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/Make.depends atac-driver/uniqueFilter/uniqueFilter.C.d rm -f atac-driver/clumpMaker/*.o atac-driver/clumpMaker/*~ atac-driver/clumpMaker/core atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/Make.depends atac-driver/clumpMaker/clumpMaker.C.d rm -f atac-driver/chainer/*.o atac-driver/chainer/*/*.o atac-driver/chainer/*.so atac-driver/chainer/python/*.pyc atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/halignmodule.so atac-driver/chainer/Make.depends atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d atac-driver/chainer/localalign/GF_ALN_local.C.d atac-driver/chainer/localalign/GF_ALN_overlap.C.d atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d atac-driver/chainer/halign/halign.C.d atac-driver/chainer/halign/halignmodule.C.d rm -f atac-driver/chimera/*.o atac-driver/chimera/*~ atac-driver/chimera/core atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/Make.depends atac-driver/chimera/happy-clones-span-clumps.C.d rm -f atac-driver/Make.depends rm -f seatac/*.o seatac/seatac seatac/heavychains seatac/filter-nop.so seatac/filter-heavychains.so seatac/Make.depends seatac/seatac.C.d seatac/configuration.C.d seatac/encodedQuery.C.d seatac/hitMatrix.C.d seatac/thr-search.C.d seatac/thr-loader.C.d seatac/thr-deadlock.C.d seatac/hitMatrix-sort.C.d rm -f leaff/*.o leaff/leaff leaff/Make.depends leaff/leaff.C.d leaff/blocks.C.d leaff/dups.C.d leaff/gc.C.d leaff/partition.C.d leaff/simseq.C.d leaff/stats.C.d rm -f meryl/*.o meryl/meryl meryl/simple meryl/mapMers meryl/mapMers-depth meryl/kmer-mask meryl/libmerylguts.a meryl/Make.depends meryl/args.C.d meryl/binaryOp.C.d meryl/build.C.d meryl/build-threads.C.d meryl/dump.C.d meryl/estimate.C.d meryl/merge.C.d meryl/unaryOp.C.d meryl/meryl.C.d meryl/simple.C.d meryl/mapMers.C.d meryl/mapMers-depth.C.d meryl/kmer-mask.C.d rm -f seagen/*.o seagen/seagen seagen/hitConverter seagen/filterEST seagen/filterMRNA seagen/filterNULL seagen/filtertest seagen/sortHits seagen/filterESTsimple seagen/Make.depends seagen/searchGENOME.C.d seagen/configuration.C.d seagen/encodedQuery.C.d seagen/thr-deadlock.C.d seagen/thr-loader.C.d seagen/thr-search.C.d seagen/thr-output.C.d seagen/hitMatrix-sort.C.d seagen/aHit.C.d seagen/hitConverter.C.d seagen/filterEST.C.d seagen/filterEST-complicated.C.d seagen/filterMRNA.C.d seagen/filterNULL.C.d seagen/sortHits.C.d seagen/filtertest.C.d seagen/hitReader.C.d seagen/hitMatrix.C.d rm -f sim4dbutils/*.o sim4dbutils/cleanPolishes sim4dbutils/fixPolishesIID sim4dbutils/comparePolishes sim4dbutils/convertToAtac sim4dbutils/convertToExtent sim4dbutils/convertPolishes sim4dbutils/detectChimera sim4dbutils/depthOfPolishes sim4dbutils/filterPolishes sim4dbutils/headPolishes sim4dbutils/mappedCoverage sim4dbutils/mergePolishes sim4dbutils/parseSNP sim4dbutils/pickBestPolish sim4dbutils/pickBestPair sim4dbutils/pickUniquePolish sim4dbutils/plotCoverageVsIdentity sim4dbutils/removeDuplicate sim4dbutils/sortPolishes sim4dbutils/summarizePolishes sim4dbutils/uniqPolishes sim4dbutils/vennPolishes sim4dbutils/realignPolishes sim4dbutils/removeRedundant sim4dbutils/reportAlignmentDifferences sim4dbutils/Make.depends sim4dbutils/cleanPolishes.C.d sim4dbutils/fixPolishesIID.C.d sim4dbutils/comparePolishes.C.d sim4dbutils/convertToAtac.C.d sim4dbutils/convertToExtent.C.d sim4dbutils/convertPolishes.C.d sim4dbutils/detectChimera.C.d sim4dbutils/depthOfPolishes.C.d sim4dbutils/filterPolishes.C.d sim4dbutils/headPolishes.C.d sim4dbutils/mappedCoverage.C.d sim4dbutils/mergePolishes.C.d sim4dbutils/parseSNP.C.d sim4dbutils/pickBestPolish.C.d sim4dbutils/pickBestPair.C.d sim4dbutils/pickUniquePolish.C.d sim4dbutils/plotCoverageVsIdentity.C.d sim4dbutils/removeDuplicate.C.d sim4dbutils/sortPolishes.C.d sim4dbutils/summarizePolishes.C.d sim4dbutils/uniqPolishes.C.d sim4dbutils/vennPolishes.C.d sim4dbutils/realignPolishes.C.d sim4dbutils/removeRedundant.C.d sim4dbutils/reportAlignmentDifferences.C.d sim4dbutils/s4p_overlap.C.d rm -f sim4db/*.o sim4db/sim4db sim4db/Make.depends sim4db/sim4th.C.d rm -f snapper/*.o snapper/snapper2 snapper/Make.depends snapper/snapper2.C.d snapper/configuration.C.d snapper/thr-search.C.d snapper/thr-filter.C.d snapper/thr-polish.C.d snapper/thr-polish-dp.C.d snapper/hitMatrix.C.d snapper/hitMatrix-sort.C.d rm -f tapper/*.o tapper/tagger tapper/tapper tapper/tapperconvert tapper/tappermerge tapper/tappersort tapper/tappererrorcorrect tapper/Make.depends tapper/tagger.C.d tapper/tapper.C.d tapper/tapperconvert.C.d tapper/tappermerge.C.d tapper/tappersort.C.d tapper/tappererrorcorrect.C.d rm -f /<>/libsim4/*.o /<>/libsim4/sim4core/*.o /<>/libsim4/sim4polish/*.o /<>/libsim4/libsim4.a /<>/libsim4/Make.depends /<>/libsim4/sim4core/sim4command.C.d /<>/libsim4/sim4core/sim4parameters.C.d /<>/libsim4/sim4core/sim4string.C.d /<>/libsim4/sim4core/Xtend1.C.d /<>/libsim4/sim4core/align.C.d /<>/libsim4/sim4core/exon_cores.C.d /<>/libsim4/sim4core/extend.C.d /<>/libsim4/sim4core/glimmerSplice.C.d /<>/libsim4/sim4core/greedy.C.d /<>/libsim4/sim4core/mspManager.C.d /<>/libsim4/sim4core/pluri_align.C.d /<>/libsim4/sim4core/poly.C.d /<>/libsim4/sim4core/sim4b1.C.d /<>/libsim4/sim4core/sim4b1a.C.d /<>/libsim4/sim4core/sim4b1-1.C.d /<>/libsim4/sim4core/sim4b1-2.C.d /<>/libsim4/sim4core/sim4b1-3.C.d /<>/libsim4/sim4core/sim4b1-4.C.d /<>/libsim4/sim4core/sim4b1_s.C.d /<>/libsim4/sim4core/sites.C.d /<>/libsim4/sim4core/sites_donor.C.d /<>/libsim4/sim4core/sites_acceptor.C.d /<>/libsim4/sim4core/sites_score.C.d /<>/libsim4/sim4core/splice.C.d /<>/libsim4/sim4core/table.C.d /<>/libsim4/sim4core/util.C.d /<>/libsim4/sim4polish/sim4polish-compare.C.d /<>/libsim4/sim4polish/sim4polish-copy.C.d /<>/libsim4/sim4polish/sim4polish-deleteexon.C.d /<>/libsim4/sim4polish/sim4polish-exons.C.d /<>/libsim4/sim4polish/sim4polish-polishtostring.C.d /<>/libsim4/sim4polish/sim4polish-read.C.d /<>/libsim4/sim4polish/sim4polish-stringtopolish.C.d /<>/libsim4/sim4polish/sim4polish-updatescores.C.d /<>/libsim4/sim4polish/sim4polish.C.d /<>/libsim4/sim4polish/sim4polishList.C.d /<>/libsim4/sim4polish/sim4polishBuilder.C.d /<>/libsim4/sim4polish/sim4polishFile.C.d /<>/libsim4/sim4polish/sim4polishReader.C.d /<>/libsim4/sim4polish/sim4polishWriter.C.d rm -f /<>/libkmer/*.o /<>/libkmer/existDB /<>/libkmer/positionDB /<>/libkmer/libkmer.a /<>/libkmer/Make.depends /<>/libkmer/existDB-create-from-fasta.C.d /<>/libkmer/existDB-create-from-meryl.C.d /<>/libkmer/existDB-create-from-sequence.C.d /<>/libkmer/existDB-state.C.d /<>/libkmer/existDB.C.d /<>/libkmer/positionDB-access.C.d /<>/libkmer/positionDB-dump.C.d /<>/libkmer/positionDB-file.C.d /<>/libkmer/positionDB-mismatch.C.d /<>/libkmer/positionDB-sort.C.d /<>/libkmer/positionDB.C.d /<>/libkmer/driver-existDB.C.d /<>/libkmer/driver-posDB.C.d rm -f /<>/libmeryl/*.o /<>/libmeryl/libmeryl.a /<>/libmeryl/Make.depends /<>/libmeryl/libmeryl.C.d rm -f /<>/libbio/*.o /<>/libbio/libbio.a /<>/libbio/Make.depends /<>/libbio/alphabet.c.d /<>/libbio/alphabet-acgtspace.c.d /<>/libbio/alphabet-colorspace.c.d /<>/libbio/halign.c.d /<>/libbio/reversecomplement.c.d /<>/libbio/kmer.C.d rm -f /<>/libseq/*.o /<>/libseq/test-seqCache /<>/libseq/test-seqStream /<>/libseq/test-merStream /<>/libseq/libseq.a /<>/libseq/Make.depends /<>/libseq/fastaFile.C.d /<>/libseq/fastaStdin.C.d /<>/libseq/fastqFile.C.d /<>/libseq/fastqStdin.C.d /<>/libseq/seqStore.C.d /<>/libseq/sffFile.C.d /<>/libseq/seqFactory.C.d /<>/libseq/seqCache.C.d /<>/libseq/seqStream.C.d /<>/libseq/merStream.C.d /<>/libseq/test-seqCache.C.d /<>/libseq/test-seqStream.C.d /<>/libseq/test-merStream.C.d rm -f /<>/libutil/mt19937ar/*.o /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/diffs /<>/libutil/mt19937ar/mt19937ar-test /<>/libutil/mt19937ar/libmt19937ar.a /<>/libutil/mt19937ar/Make.depends /<>/libutil/mt19937ar/mt19937ar.c.d /<>/libutil/mt19937ar/test.c.d /<>/libutil/mt19937ar/*.o /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/diffs /<>/libutil/mt19937ar/mt19937ar-test rm -f /<>/libutil/kazlib/*.o /<>/libutil/kazlib/libkaz.a /<>/libutil/kazlib/Make.depends /<>/libutil/kazlib/dict.c.d /<>/libutil/kazlib/except.c.d /<>/libutil/kazlib/hash.c.d /<>/libutil/kazlib/list.c.d /<>/libutil/kazlib/sfx.c.d rm -f /<>/libutil/*.o /<>/libutil/libutil.a /<>/libutil/Make.depends /<>/libutil/file.c.d /<>/libutil/md5.c.d /<>/libutil/palloc.c.d /<>/libutil/qsort_mt.c.d /<>/libutil/util.c.d /<>/libutil/bigQueue.C.d /<>/libutil/bitPackedArray.C.d /<>/libutil/bitPackedFile.C.d /<>/libutil/fibonacciNumbers.C.d /<>/libutil/readBuffer.C.d /<>/libutil/recordFile.C.d /<>/libutil/speedCounter.C.d /<>/libutil/sweatShop.C.d rm -f Make.depends Make.compilers make[2]: Leaving directory '/<>' rm -rf installdir make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building kmer using existing ./kmer_0~20150903+r2013.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building kmer in kmer_0~20150903+r2013-8.debian.tar.xz dpkg-source: info: building kmer in kmer_0~20150903+r2013-8.dsc debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make install \ CLDFLAGS="-Wl,-z,relro -Wl,-z,now" \ CXXLDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' making /<>/libutil/kazlib/sfx.c.d making /<>/libutil/kazlib/list.c.d making /<>/libutil/kazlib/hash.c.d making /<>/libutil/kazlib/except.c.d making /<>/libutil/kazlib/dict.c.d gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/mt19937ar.o -c /<>/libutil/mt19937ar/mt19937ar.c /<>/libutil/mt19937ar/mt19937ar.c: In function ‘mtRandomGaussian’: /<>/libutil/mt19937ar/mt19937ar.c:166:34: warning: variable ‘y2’ set but not used [-Wunused-but-set-variable] 166 | double x1=0, x2=0, w=0, y1=0, y2=0; | ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/mt19937ar-test.o -c /<>/libutil/mt19937ar/mt19937ar-test.c gcc -Wl,-z,relro -Wl,-z,now -o /<>/libutil/mt19937ar/mt19937ar-test /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm /<>/libutil/mt19937ar/mt19937ar-test | diff - /<>/libutil/mt19937ar/mt19937ar.out > /<>/libutil/mt19937ar/diffs 2>&1 if test -s /<>/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi MT19937: Test Passed touch /<>/libutil/mt19937ar/test.c /<>/libutil/mt19937ar/mt19937ar-test | diff - /<>/libutil/mt19937ar/mt19937ar.out making /<>/libutil/mt19937ar/test.c.d making /<>/libutil/mt19937ar/mt19937ar.c.d making /<>/libutil/sweatShop.C.d making /<>/libutil/speedCounter.C.d making /<>/libutil/recordFile.C.d making /<>/libutil/readBuffer.C.d making /<>/libutil/fibonacciNumbers.C.d making /<>/libutil/bitPackedFile.C.d making /<>/libutil/bitPackedArray.C.d making /<>/libutil/bigQueue.C.d making /<>/libutil/util.c.d making /<>/libutil/qsort_mt.c.d making /<>/libutil/palloc.c.d making /<>/libutil/md5.c.d making /<>/libutil/file.c.d making /<>/libseq/test-merStream.C.d making /<>/libseq/test-seqStream.C.d making /<>/libseq/test-seqCache.C.d making /<>/libseq/merStream.C.d making /<>/libseq/seqStream.C.d making /<>/libseq/seqCache.C.d making /<>/libseq/seqFactory.C.d making /<>/libseq/sffFile.C.d making /<>/libseq/seqStore.C.d making /<>/libseq/fastqStdin.C.d making /<>/libseq/fastqFile.C.d making /<>/libseq/fastaStdin.C.d making /<>/libseq/fastaFile.C.d making /<>/libbio/kmer.C.d making /<>/libbio/reversecomplement.c.d making /<>/libbio/halign.c.d making /<>/libbio/alphabet-colorspace.c.d making /<>/libbio/alphabet-acgtspace.c.d making /<>/libbio/alphabet.c.d making /<>/libmeryl/libmeryl.C.d making /<>/libkmer/driver-posDB.C.d making /<>/libkmer/driver-existDB.C.d making /<>/libkmer/positionDB.C.d making /<>/libkmer/positionDB-sort.C.d making /<>/libkmer/positionDB-mismatch.C.d making /<>/libkmer/positionDB-file.C.d making /<>/libkmer/positionDB-dump.C.d making /<>/libkmer/positionDB-access.C.d making /<>/libkmer/existDB.C.d making /<>/libkmer/existDB-state.C.d making /<>/libkmer/existDB-create-from-sequence.C.d making /<>/libkmer/existDB-create-from-meryl.C.d making /<>/libkmer/existDB-create-from-fasta.C.d making /<>/libsim4/sim4polish/sim4polishWriter.C.d making /<>/libsim4/sim4polish/sim4polishReader.C.d making /<>/libsim4/sim4polish/sim4polishFile.C.d making /<>/libsim4/sim4polish/sim4polishBuilder.C.d making /<>/libsim4/sim4polish/sim4polishList.C.d making /<>/libsim4/sim4polish/sim4polish.C.d making /<>/libsim4/sim4polish/sim4polish-updatescores.C.d making /<>/libsim4/sim4polish/sim4polish-stringtopolish.C.d making /<>/libsim4/sim4polish/sim4polish-read.C.d making /<>/libsim4/sim4polish/sim4polish-polishtostring.C.d making /<>/libsim4/sim4polish/sim4polish-exons.C.d making /<>/libsim4/sim4polish/sim4polish-deleteexon.C.d making /<>/libsim4/sim4polish/sim4polish-copy.C.d making /<>/libsim4/sim4polish/sim4polish-compare.C.d making /<>/libsim4/sim4core/util.C.d making /<>/libsim4/sim4core/table.C.d making /<>/libsim4/sim4core/splice.C.d making /<>/libsim4/sim4core/sites_score.C.d making /<>/libsim4/sim4core/sites_acceptor.C.d making /<>/libsim4/sim4core/sites_donor.C.d making /<>/libsim4/sim4core/sites.C.d making /<>/libsim4/sim4core/sim4b1_s.C.d making /<>/libsim4/sim4core/sim4b1-4.C.d making /<>/libsim4/sim4core/sim4b1-3.C.d making /<>/libsim4/sim4core/sim4b1-2.C.d making /<>/libsim4/sim4core/sim4b1-1.C.d making /<>/libsim4/sim4core/sim4b1a.C.d making /<>/libsim4/sim4core/sim4b1.C.d making /<>/libsim4/sim4core/poly.C.d making /<>/libsim4/sim4core/pluri_align.C.d making /<>/libsim4/sim4core/mspManager.C.d making /<>/libsim4/sim4core/greedy.C.d making /<>/libsim4/sim4core/glimmerSplice.C.d making /<>/libsim4/sim4core/extend.C.d making /<>/libsim4/sim4core/exon_cores.C.d making /<>/libsim4/sim4core/align.C.d making /<>/libsim4/sim4core/Xtend1.C.d making /<>/libsim4/sim4core/sim4string.C.d making /<>/libsim4/sim4core/sim4parameters.C.d making /<>/libsim4/sim4core/sim4command.C.d making tapper/tappererrorcorrect.C.d making tapper/tappersort.C.d making tapper/tappermerge.C.d making tapper/tapperconvert.C.d making tapper/tapper.C.d making tapper/tagger.C.d making snapper/hitMatrix-sort.C.d making snapper/hitMatrix.C.d making snapper/thr-polish-dp.C.d making snapper/thr-polish.C.d making snapper/thr-filter.C.d making snapper/thr-search.C.d making snapper/configuration.C.d making snapper/snapper2.C.d making sim4db/sim4th.C.d making sim4dbutils/s4p_overlap.C.d making sim4dbutils/reportAlignmentDifferences.C.d making sim4dbutils/removeRedundant.C.d making sim4dbutils/realignPolishes.C.d making sim4dbutils/vennPolishes.C.d making sim4dbutils/uniqPolishes.C.d making sim4dbutils/summarizePolishes.C.d making sim4dbutils/sortPolishes.C.d making sim4dbutils/removeDuplicate.C.d making sim4dbutils/plotCoverageVsIdentity.C.d making sim4dbutils/pickUniquePolish.C.d making sim4dbutils/pickBestPair.C.d making sim4dbutils/pickBestPolish.C.d making sim4dbutils/parseSNP.C.d making sim4dbutils/mergePolishes.C.d making sim4dbutils/mappedCoverage.C.d making sim4dbutils/headPolishes.C.d making sim4dbutils/filterPolishes.C.d making sim4dbutils/depthOfPolishes.C.d making sim4dbutils/detectChimera.C.d making sim4dbutils/convertPolishes.C.d making sim4dbutils/convertToExtent.C.d making sim4dbutils/convertToAtac.C.d making sim4dbutils/comparePolishes.C.d making sim4dbutils/fixPolishesIID.C.d making sim4dbutils/cleanPolishes.C.d making seagen/hitMatrix.C.d making seagen/hitReader.C.d making seagen/filtertest.C.d making seagen/sortHits.C.d making seagen/filterNULL.C.d making seagen/filterMRNA.C.d making seagen/filterEST-complicated.C.d making seagen/filterEST.C.d making seagen/hitConverter.C.d making seagen/aHit.C.d making seagen/hitMatrix-sort.C.d making seagen/thr-output.C.d making seagen/thr-search.C.d making seagen/thr-loader.C.d making seagen/thr-deadlock.C.d making seagen/encodedQuery.C.d making seagen/configuration.C.d making seagen/searchGENOME.C.d making meryl/kmer-mask.C.d making meryl/mapMers-depth.C.d making meryl/mapMers.C.d making meryl/simple.C.d making meryl/meryl.C.d making meryl/unaryOp.C.d making meryl/merge.C.d making meryl/estimate.C.d making meryl/dump.C.d making meryl/build-threads.C.d making meryl/build.C.d making meryl/binaryOp.C.d making meryl/args.C.d making leaff/stats.C.d making leaff/simseq.C.d making leaff/partition.C.d making leaff/gc.C.d making leaff/dups.C.d making leaff/blocks.C.d making leaff/leaff.C.d making seatac/hitMatrix-sort.C.d making seatac/thr-deadlock.C.d making seatac/thr-loader.C.d making seatac/thr-search.C.d making seatac/hitMatrix.C.d making seatac/encodedQuery.C.d making seatac/configuration.C.d making seatac/seatac.C.d making atac-driver/chimera/happy-clones-span-clumps.C.d making atac-driver/chainer/halign/halignmodule.C.d making atac-driver/chainer/halign/halign.C.d making atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d making atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d making atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d making atac-driver/chainer/localalign/GF_ALN_overlap.C.d making atac-driver/chainer/localalign/GF_ALN_local.C.d making atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d making atac-driver/clumpMaker/clumpMaker.C.d making atac-driver/uniqueFilter/uniqueFilter.C.d making atac-driver/statsGenerator/statsGenerator.C.d making atac-driver/mismatchCounter/mismatchCounter.C.d making atac-driver/matchExtender/matchExtender-func.C.d making atac-driver/matchExtender/matchExtender-dump.C.d making atac-driver/matchExtender/matchExtender.C.d making atac-driver/lengthFilter/lengthFilter.C.d making atac-driver/gapShifter/projectFeatures.C.d making atac-driver/gapShifter/cleanAtac.C.d making atac-driver/gapShifter/testAtac.C.d making atac-driver/gapShifter/correctGaps.C.d making atac-driver/gapShifter/coalesceMatches.C.d making atac-driver/gapShifter/extractUnmapped.C.d making atac-driver/gapShifter/extractSequence.C.d making atac-driver/gapShifter/gapShifter.C.d making atac-driver/alignOverlap/overlap-find.C.d making atac-driver/alignOverlap/overlap-printAnno.C.d making atac-driver/alignOverlap/overlap-sort.C.d making atac-driver/alignOverlap/overlap.C.d making atac-driver/libatac/atacMatchOrder.C.d making atac-driver/libatac/atacMatchList.C.d making atac-driver/libatac/atacMatch.C.d making atac-driver/libatac/atacFileStreamMerge.C.d making atac-driver/libatac/atacFile.C.d making atac-driver/libatac/atacFeatureList.C.d making atac-driver/libatac/atacFeature.C.d making ESTmapper/terminate.C.d making ESTmapper/mergeCounts.C.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/mergeCounts.o -c ESTmapper/mergeCounts.C ESTmapper/mergeCounts.C: In function ‘int main(int, char**)’: ESTmapper/mergeCounts.C:33:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 33 | fgets(buf, 256, Fs[i]); | ~~~~~^~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o ESTmapper/mergeCounts ESTmapper/mergeCounts.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/terminate.o -c ESTmapper/terminate.C In file included from /<>/libutil/util++.H:4, from ESTmapper/terminate.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ ESTmapper/terminate.C: In member function ‘void iidReaderWriter::load(uint32)’: ESTmapper/terminate.C:82:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fscanf(inFile, uint32FMT, &iid); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ESTmapper/terminate.C:85:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fscanf(inFile, uint32FMT, &iid); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4command.o -c /<>/libsim4/sim4core/sim4command.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4core/sim4command.H:4, from /<>/libsim4/sim4core/sim4command.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sim4command.C: In member function ‘void sim4command::finalize()’: /<>/libsim4/sim4core/sim4command.C:147:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 147 | if (_genLo > _genHi) | ^ /<>/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getESTheader()’: /<>/libsim4/sim4core/sim4command.C:184:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 184 | static char *xxx = "anonymous cDNA sequence"; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getGENheader()’: /<>/libsim4/sim4core/sim4command.C:222:15: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 222 | char *xxx = "anonymous genomic sequence"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4parameters.o -c /<>/libsim4/sim4core/sim4parameters.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/mspManager.H:8, from /<>/libsim4/sim4core/sim4parameters.H:4, from /<>/libsim4/sim4core/sim4parameters.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4string.o -c /<>/libsim4/sim4core/sim4string.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4string.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sim4string.C: In member function ‘void Sim4::IDISPLAY(sim4polishBuilder&, char*, char*, char*, char*, int, int, int*, int, int, int, Exon*)’: /<>/libsim4/sim4core/sim4string.C:677:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^ /<>/libsim4/sim4core/sim4string.C:677:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^ /<>/libsim4/sim4core/sim4string.C:677:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 677 | register int i, j, op; | ^~ /<>/libsim4/sim4core/sim4string.C:681:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 681 | builder.addExonAlignment("Empty exon list; no alignment possible!", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:682:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 682 | "Empty exon list; no alignment possible!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:694:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 694 | builder.addExonAlignment("Alignment fragment not found; no alignment possible!", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/sim4string.C:695:30: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 695 | "Alignment fragment not found; no alignment possible!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/Xtend1.o -c /<>/libsim4/sim4core/Xtend1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/Xtend1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/align.o -c /<>/libsim4/sim4core/align.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/align.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/align.C: In member function ‘void Sim4::path(int, int, char, int, int, char, int, edit_script**, edit_script**)’: /<>/libsim4/sim4core/align.C:777:13: warning: ‘head2’ may be used uninitialized [-Wmaybe-uninitialized] 777 | if (head2) *tail = tail2; | ^~~~~ /<>/libsim4/sim4core/align.C:557:38: note: ‘head2’ declared here 557 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/exon_cores.o -c /<>/libsim4/sim4core/exon_cores.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/exon_cores.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/extend.o -c /<>/libsim4/sim4core/extend.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/extend.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/glimmerSplice.o -c /<>/libsim4/sim4core/glimmerSplice.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/glimmerSplice.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/glimmerSplice.C: In function ‘void readModel(Fixed_Length_ICM_t*, const char*)’: /<>/libsim4/sim4core/glimmerSplice.C:53:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4core/glimmerSplice.C:84:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fread ((*fixed).permutation, sizeof (int), (*fixed).length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/greedy.o -c /<>/libsim4/sim4core/greedy.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/greedy.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/mspManager.o -c /<>/libsim4/sim4core/mspManager.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/mspManager.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/pluri_align.o -c /<>/libsim4/sim4core/pluri_align.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/pluri_align.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/poly.o -c /<>/libsim4/sim4core/poly.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/poly.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/poly.C: In member function ‘void Sim4::get_polyAT(char*, int, int*, int*, int)’: /<>/libsim4/sim4core/poly.C:9:16: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^ /<>/libsim4/sim4core/poly.C:9:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^~~~~ /<>/libsim4/sim4core/poly.C:9:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 9 | register int i, sum10, sum20; | ^~~~~ /<>/libsim4/sim4core/poly.C:10:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ /<>/libsim4/sim4core/poly.C:10:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ /<>/libsim4/sim4core/poly.C:10:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 10 | register char *s, *t, *v; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1.o -c /<>/libsim4/sim4core/sim4b1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1a.o -c /<>/libsim4/sim4core/sim4b1a.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1a.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-1.o -c /<>/libsim4/sim4core/sim4b1-1.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-1.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-2.o -c /<>/libsim4/sim4core/sim4b1-2.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-2.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-3.o -c /<>/libsim4/sim4core/sim4b1-3.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-3.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1-4.o -c /<>/libsim4/sim4core/sim4b1-4.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1-4.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sim4b1_s.o -c /<>/libsim4/sim4core/sim4b1_s.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sim4b1_s.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites.o -c /<>/libsim4/sim4core/sites.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/sites.C: In function ‘int readtree(Sim4*, char*, tree*, int)’: /<>/libsim4/sim4core/sites.C:452:6: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 452 | int len; | ^~~ /<>/libsim4/sim4core/sites.C: In function ‘int Is_Cod_NonCod(const int*, double*, int)’: /<>/libsim4/sim4core/sites.C:751:12: warning: ‘scores’ may be used uninitialized [-Wmaybe-uninitialized] 751 | double *scores; | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_donor.o -c /<>/libsim4/sim4core/sites_donor.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_donor.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_acceptor.o -c /<>/libsim4/sim4core/sites_acceptor.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_acceptor.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/sites_score.o -c /<>/libsim4/sim4core/sites_score.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/sites_score.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/splice.o -c /<>/libsim4/sim4core/splice.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/splice.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/table.o -c /<>/libsim4/sim4core/table.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/table.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/table.C: In member function ‘void Sim4::bld_table(char*, int, mss_t, int)’: /<>/libsim4/sim4core/table.C:112:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 112 | if (emer < 0) | ^~ /<>/libsim4/sim4core/table.C:115:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 115 | ecode <<= 2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4core/util.o -c /<>/libsim4/sim4core/util.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4core/sim4.H:15, from /<>/libsim4/sim4core/util.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4core/util.C: In member function ‘void Sim4::complement_exons(Exon**, int, int)’: /<>/libsim4/sim4core/util.C:23:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 23 | register int aux; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-compare.o -c /<>/libsim4/sim4polish/sim4polish-compare.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-compare.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:249:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 249 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:249:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 249 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ /<>/libsim4/sim4polish/sim4polish-compare.C:365:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, "s4p_compareExons()-- Can't allocate "uint32FMT" + "uint32FMT" words for counting exons.\n%s\n", A->_numExons, B->_numExons, strerror(errno)); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-copy.o -c /<>/libsim4/sim4polish/sim4polish-copy.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-copy.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-deleteexon.o -c /<>/libsim4/sim4polish/sim4polish-deleteexon.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-deleteexon.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-exons.o -c /<>/libsim4/sim4polish/sim4polish-exons.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-exons.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-polishtostring.o -c /<>/libsim4/sim4polish/sim4polish-polishtostring.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-polishtostring.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:58:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:68:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:80:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 80 | sprintf(gpp, "%c"uint32FMT" ", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:91:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | sprintf(gpp, "%c"uint32FMT"", gaptyp, gapcnt); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 163 | fprintf(stderr, "sim4reader: Unknown matchOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:176:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolish()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:100: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:181:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | sprintf(outc, "sim4begin\n"uint32FMT"["uint32FMT"-"uint32FMT"-"uint32FMT"] "uint32FMT"["uint32FMT"-"uint32FMT"] <"uint32FMT"-"uint32FMT"-"uint32FMT"-%s-%s>\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:212:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | sprintf(outc, ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">%s\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:323:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 323 | fprintf(stderr, "sim4reader: Unknown strandOrientation '"uint32FMT"' in printPolishGFF3()\n", _matchOrientation); | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:346:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | sprintf(outc, uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:350:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 350 | sprintf(outc, "ID=sim4db"uint32FMT";Name="uint32FMT":%s;Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:354:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 354 | sprintf(outc, "targetLen="uint32FMT";pA="uint32FMT";pT="uint32FMT";genRegion="uint32FMT"-"uint32FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:363:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 363 | sprintf(outc, uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:368:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 368 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;Gap=%s;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ /<>/libsim4/sim4polish/sim4polish-polishtostring.C:371:91: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | sprintf(outc, "Parent=sim4db"uint32FMT";Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c;nMatches="uint32FMT"", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-read.o -c /<>/libsim4/sim4polish/sim4polish-read.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-read.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-read.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "sim4reader: Got '%s', expecting 'sim4begin' at byte "uint64FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-read.C:65:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] 65 | #warning LAZY PROGRAMMER did not extend an array | ^~~~~~~ /<>/libsim4/sim4polish/sim4polish-read.C:126:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "sim4reader: Got '%s', expecting GFF3 mRNA line at byte "uint64FMT"\n", | ^ /<>/libsim4/sim4polish/sim4polish-read.C:150:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] 150 | #warning LAZY PROGRAMMER did not extend an array | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-stringtopolish.o -c /<>/libsim4/sim4polish/sim4polish-stringtopolish.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:42:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | uint32 r = sscanf(lines[cl], ""uint32FMT"["uint32FMT" "uint32FMT" "uint32FMT"] "uint32FMT"["uint32FMT" "uint32FMT"] <"uint32FMT" "uint32FMT" "uint32FMT" %s %s>", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:72:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 72 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:127:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | while (sscanf(lines[cl], ""uint32FMT"-"uint32FMT" ("uint32FMT"-"uint32FMT") <"uint32FMT"-"uint32FMT"-"uint32FMT">", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stderr, "sim4polish::s4p_linesToPolishS4DB()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:243:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\tmRNA\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:246:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 246 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:275:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | r = sscanf(crttok, "ID=sim4db"uint32FMT"", &matchID); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:280:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 280 | r = sscanf(crttok, "Name="uint32FMT":%s", &_estID, _estDefLine); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:285:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | r = sscanf(crttok, "Target="uint32FMT":%s "uint32FMT" "uint32FMT" %c", &_estID, _estDefLine, &dummy1, &dummy2, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:293:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 293 | r = sscanf(crttok, "targetLen="uint32FMT"", &_estLen); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:296:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | r = sscanf(crttok, "pA="uint32FMT"", &_estPolyA); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:299:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | r = sscanf(crttok, "pT="uint32FMT"", &_estPolyT); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:302:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:302:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | r = sscanf(crttok, "genRegion="uint32FMT"-"uint32FMT"", &_genRegionOffset, &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:313:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 313 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:339:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | r = sscanf(lines[cl], ""uint32FMT":%s\tsim4db\texon\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t.\t", | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:342:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 342 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:366:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 366 | r = sscanf(crttok, "Parent=sim4db"uint32FMT"", &dummy1); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:377:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 377 | r = sscanf(crttok, "nMatches="uint32FMT"", &exon._numMatches); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:403:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 403 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:437:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 437 | fprintf(stderr, "sim4polish::s4p_linesToPolishGFF3()-- byte "uint32FMT": '%s'\n", startPosition, lines[cl]); | ^ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishS4DB(uint32, uint32, char**, uint32*)’: /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:140:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 140 | memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishGFF3(uint32, uint32, char**, uint32*)’: /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:261:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 261 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:261:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 261 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:262:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 262 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:262:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 262 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:263:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 263 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:263:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 263 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:264:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 264 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:264:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 264 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:265:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 265 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:265:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 265 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:266:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 266 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:266:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 266 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:267:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 267 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:267:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 267 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:268:5: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 268 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:268:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 268 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 346 | if ((dummy1 != _genID) || strcmp(dummybuf, _genDefLine) || | ~~~~~~~^~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:347:40: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 347 | (sOri != '+') && (sOri != '-') && (sOri != '.')) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:352:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 352 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:352:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 352 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:353:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 353 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:353:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 353 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:354:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 354 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:354:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 354 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:355:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 355 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:355:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 355 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:356:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 356 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:356:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 356 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:357:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 357 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:357:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 357 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:358:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 358 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:358:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 358 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:359:7: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 359 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:359:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 359 | while (*clptr!='\t') clptr++; clptr++; | ^~~~~ /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:370:30: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] 370 | r = sscanf(crttok, "Target=%s "uint32FMT" "uint32FMT" %c", &dummybuf, &exon._estFrom, &exon._estTo, &mOri); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ | | | char (*)[1000] /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:383:39: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat=] 383 | r = sscanf(crttok, "intron=%s", &dummybuf); | ~^ ~~~~~~~~~ | | | | | char (*)[1000] | char* /<>/libsim4/sim4polish/sim4polish-stringtopolish.C:414:13: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 414 | memcpy(nnn, _exons, sizeof(sim4polishExon) * _numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish-updatescores.o -c /<>/libsim4/sim4polish/sim4polish-updatescores.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish-updatescores.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polish.o -c /<>/libsim4/sim4polish/sim4polish.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishList.o -c /<>/libsim4/sim4polish/sim4polishList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4polish/sim4polishList.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishBuilder.o -c /<>/libsim4/sim4polish/sim4polishBuilder.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libsim4/sim4polish/sim4polishBuilder.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polishBuilder.C: In member function ‘sim4polish* sim4polishBuilder::release()’: /<>/libsim4/sim4polish/sim4polishBuilder.C:246:11: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 246 | memcpy(it->_exons + i, ex[i], sizeof(sim4polishExon)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/libsim4/sim4polish/sim4polishBuilder.H:4, from /<>/libsim4/sim4polish/sim4polishBuilder.C:7: /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishFile.o -c /<>/libsim4/sim4polish/sim4polishFile.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishFile.H:4, from /<>/libsim4/sim4polish/sim4polishFile.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libsim4/sim4polish/sim4polishFile.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); | ^ /<>/libsim4/sim4polish/sim4polishFile.C:120:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Failed to reposition %s to record "uint32FMT", only "uint32FMT" records\n", _path, ordinal, _polishRecordLen), exit(1); | ^ /<>/libsim4/sim4polish/sim4polishFile.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "polishes: "uint32FMT"\r", _polishRecordLen); | ^ /<>/libsim4/sim4polish/sim4polishFile.C: In member function ‘void sim4polishFile::loadIndex()’: /<>/libsim4/sim4polish/sim4polishFile.C:141:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | fread(&magic, sizeof(char), 8, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:145:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fread(&_polishRecordLen, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:151:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fread( _polishRecord, sizeof(polishRecord), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:152:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fread( _polishRecordEST, sizeof(uint32), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:153:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fread( _polishRecordGEN, sizeof(uint32), _polishRecordLen, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:155:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fread(&_maxEST, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:156:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fread(&_maxGEN, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:161:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fread( _ESTiidLocation, sizeof(uint32), _maxEST, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polishFile.C:162:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fread( _GENiidLocation, sizeof(uint32), _maxGEN, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishReader.o -c /<>/libsim4/sim4polish/sim4polishReader.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishReader.H:4, from /<>/libsim4/sim4polish/sim4polishReader.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/sim4polish/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libsim4/sim4polish/sim4polishWriter.o -c /<>/libsim4/sim4polish/sim4polishWriter.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4polish/sim4polishWriter.H:4, from /<>/libsim4/sim4polish/sim4polishWriter.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f /<>/libsim4/libsim4.a && ar ruvs /<>/libsim4/libsim4.a /<>/libsim4/sim4core/sim4command.o /<>/libsim4/sim4core/sim4parameters.o /<>/libsim4/sim4core/sim4string.o /<>/libsim4/sim4core/Xtend1.o /<>/libsim4/sim4core/align.o /<>/libsim4/sim4core/exon_cores.o /<>/libsim4/sim4core/extend.o /<>/libsim4/sim4core/glimmerSplice.o /<>/libsim4/sim4core/greedy.o /<>/libsim4/sim4core/mspManager.o /<>/libsim4/sim4core/pluri_align.o /<>/libsim4/sim4core/poly.o /<>/libsim4/sim4core/sim4b1.o /<>/libsim4/sim4core/sim4b1a.o /<>/libsim4/sim4core/sim4b1-1.o /<>/libsim4/sim4core/sim4b1-2.o /<>/libsim4/sim4core/sim4b1-3.o /<>/libsim4/sim4core/sim4b1-4.o /<>/libsim4/sim4core/sim4b1_s.o /<>/libsim4/sim4core/sites.o /<>/libsim4/sim4core/sites_donor.o /<>/libsim4/sim4core/sites_acceptor.o /<>/libsim4/sim4core/sites_score.o /<>/libsim4/sim4core/splice.o /<>/libsim4/sim4core/table.o /<>/libsim4/sim4core/util.o /<>/libsim4/sim4polish/sim4polish-compare.o /<>/libsim4/sim4polish/sim4polish-copy.o /<>/libsim4/sim4polish/sim4polish-deleteexon.o /<>/libsim4/sim4polish/sim4polish-exons.o /<>/libsim4/sim4polish/sim4polish-polishtostring.o /<>/libsim4/sim4polish/sim4polish-read.o /<>/libsim4/sim4polish/sim4polish-stringtopolish.o /<>/libsim4/sim4polish/sim4polish-updatescores.o /<>/libsim4/sim4polish/sim4polish.o /<>/libsim4/sim4polish/sim4polishList.o /<>/libsim4/sim4polish/sim4polishBuilder.o /<>/libsim4/sim4polish/sim4polishFile.o /<>/libsim4/sim4polish/sim4polishReader.o /<>/libsim4/sim4polish/sim4polishWriter.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libsim4/libsim4.a a - /<>/libsim4/sim4core/sim4command.o a - /<>/libsim4/sim4core/sim4parameters.o a - /<>/libsim4/sim4core/sim4string.o a - /<>/libsim4/sim4core/Xtend1.o a - /<>/libsim4/sim4core/align.o a - /<>/libsim4/sim4core/exon_cores.o a - /<>/libsim4/sim4core/extend.o a - /<>/libsim4/sim4core/glimmerSplice.o a - /<>/libsim4/sim4core/greedy.o a - /<>/libsim4/sim4core/mspManager.o a - /<>/libsim4/sim4core/pluri_align.o a - /<>/libsim4/sim4core/poly.o a - /<>/libsim4/sim4core/sim4b1.o a - /<>/libsim4/sim4core/sim4b1a.o a - /<>/libsim4/sim4core/sim4b1-1.o a - /<>/libsim4/sim4core/sim4b1-2.o a - /<>/libsim4/sim4core/sim4b1-3.o a - /<>/libsim4/sim4core/sim4b1-4.o a - /<>/libsim4/sim4core/sim4b1_s.o a - /<>/libsim4/sim4core/sites.o a - /<>/libsim4/sim4core/sites_donor.o a - /<>/libsim4/sim4core/sites_acceptor.o a - /<>/libsim4/sim4core/sites_score.o a - /<>/libsim4/sim4core/splice.o a - /<>/libsim4/sim4core/table.o a - /<>/libsim4/sim4core/util.o a - /<>/libsim4/sim4polish/sim4polish-compare.o a - /<>/libsim4/sim4polish/sim4polish-copy.o a - /<>/libsim4/sim4polish/sim4polish-deleteexon.o a - /<>/libsim4/sim4polish/sim4polish-exons.o a - /<>/libsim4/sim4polish/sim4polish-polishtostring.o a - /<>/libsim4/sim4polish/sim4polish-read.o a - /<>/libsim4/sim4polish/sim4polish-stringtopolish.o a - /<>/libsim4/sim4polish/sim4polish-updatescores.o a - /<>/libsim4/sim4polish/sim4polish.o a - /<>/libsim4/sim4polish/sim4polishList.o a - /<>/libsim4/sim4polish/sim4polishBuilder.o a - /<>/libsim4/sim4polish/sim4polishFile.o a - /<>/libsim4/sim4polish/sim4polishReader.o a - /<>/libsim4/sim4polish/sim4polishWriter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastaFile.o -c /<>/libseq/fastaFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastaFile.H:4, from /<>/libseq/fastaFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastaFile.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:151:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "fastaFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:252:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 252 | fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C:252:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 252 | fprintf(stderr, "fastaFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastaFile.C: In member function ‘void fastaFile::loadIndex(char*)’: /<>/libseq/fastaFile.C:357:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 357 | fread(&_header, sizeof(fastaFileHeader), 1, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastaFile.C:379:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 379 | fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastaFile.C:380:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 380 | fread(_names, sizeof(char), _header._namesLength, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastaStdin.o -c /<>/libseq/fastaStdin.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastaStdin.H:4, from /<>/libseq/fastaStdin.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastaStdin.C: In member function ‘virtual bool fastaStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/libseq/fastaStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] 110 | bool ret = true; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastqFile.o -c /<>/libseq/fastqFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastqFile.H:4, from /<>/libseq/fastqFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastqFile.C:141:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 141 | fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:141:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 141 | fprintf(stderr, "fastqFile::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:253:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 253 | fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:253:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 253 | fprintf(stderr, "fastqFile::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/fastqFile.C:533:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C:533:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C:533:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 533 | fprintf(stderr, "REALLOC len="uint32FMT" from "uint32FMT" to "uint32FMT"\n", indexLen, indexMax, indexMax * 2); | ^ /<>/libseq/fastqFile.C: In member function ‘void fastqFile::loadIndex(char*)’: /<>/libseq/fastqFile.C:354:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | fread(&_header, sizeof(fastqFileHeader), 1, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastqFile.C:374:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 374 | fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/fastqFile.C:375:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 375 | fread(_names, sizeof(char), _header._namesLength, I); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/fastqStdin.o -c /<>/libseq/fastqStdin.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/fastqStdin.H:4, from /<>/libseq/fastqStdin.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/fastqStdin.C: In member function ‘virtual bool fastqStdin::getSequence(uint32, char*&, uint32&, uint32&, char*&, uint32&, uint32&)’: /<>/libseq/fastqStdin.C:110:9: warning: unused variable ‘ret’ [-Wunused-variable] 110 | bool ret = true; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqStore.o -c /<>/libseq/seqStore.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/seqStore.H:4, from /<>/libseq/seqStore.C:2: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqStore.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:129:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "seqStore::getSequence(full)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:197:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:197:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "seqStore::getSequence(part)-- iid "uint32FMT" more than number of sequences "uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:96: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:203:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "seqStore::getSequence(part)-- for iid "uint32FMT"; invalid bgn="uint32FMT" end="uint32FMT"; seqLen="uint32FMT"\n", | ^ /<>/libseq/seqStore.C:463:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 463 | fprintf(stderr, "constructSeqStore()-- sequence %s too long, must be shorter than "uint64FMT" Gbp.\n", | ^ /<>/libseq/seqStore.C:467:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 467 | fprintf(stderr, "constructSeqStore()-- too many sequences, must be fewer than "uint64FMT".\n", | ^ /<>/libseq/seqStore.C:620:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C:620:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 620 | fprintf(stderr, "constructSeqStore()-- seqStore '%s' constructed ("uint32FMT" sequences, "uint64FMT" ACGT letters, "uint32FMT" ACGT blocks, "uint32FMT" GAP blocks).\n", | ^ /<>/libseq/seqStore.C: In function ‘void constructSeqStore(char*, seqCache*)’: /<>/libseq/seqStore.C:410:9: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] 410 | memset(&HEAD, sizeof(seqStoreHeader), 0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In constructor ‘seqStore::seqStore(const char*)’: /<>/libseq/seqStore.C:21:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 21 | fread(&_header, sizeof(seqStoreHeader), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In member function ‘virtual seqFile* seqStore::openFile(const char*)’: /<>/libseq/seqStore.C:73:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | fread(&magic1, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:74:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 74 | fread(&magic2, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C: In member function ‘void seqStore::loadIndex()’: /<>/libseq/seqStore.C:318:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 318 | fread(&_header, sizeof(seqStoreHeader), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 329 | fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:343:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 343 | fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/seqStore.C:347:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | fread( _names, sizeof(char), _header._namesLength, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/sffFile.o -c /<>/libseq/sffFile.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/sffFile.H:4, from /<>/libseq/sffFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqFactory.o -c /<>/libseq/seqFactory.C In file included from /<>/libseq/seqFactory.H:4, from /<>/libseq/seqFactory.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/fastaFile.H:4, from /<>/libseq/seqFactory.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqCache.o -c /<>/libseq/seqCache.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/seqCache.H:4, from /<>/libseq/seqCache.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqCache.C:171:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stderr, "seqCache::loadAllSequences()-- Failed to load iid "uint32FMT".\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/seqStream.o -c /<>/libseq/seqStream.C In file included from /<>/libseq/seqFactory.H:4, from /<>/libseq/seqStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqStream.H:4, from /<>/libseq/seqStream.C:2: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libseq/seqStream.C:236:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:236:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:236:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "seqStream::setRange()-- ERROR: range ("uint64FMT","uint64FMT") too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:268:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:268:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(stderr, "seqStream::sequenceNumberOfPosition()-- WARNING: position p="uint64FMT" too big; only "uint64FMT" positions.\n", | ^ /<>/libseq/seqStream.C:340:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:340:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:340:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #1 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ /<>/libseq/seqStream.C:386:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 386 | fprintf(stderr, "seqStream::fillBuffer()-- Failed to getSequence(part) #2 iid="uint32FMT" bgn="uint32FMT" end="uint32FMT"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/merStream.o -c /<>/libseq/merStream.C In file included from /<>/libutil/util++.H:4, from /<>/libseq/merStream.H:4, from /<>/libseq/merStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-seqCache.o -c /<>/libseq/test-seqCache.C In file included from /<>/libseq/test-seqCache.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-seqCache.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-seqCache.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-seqCache.C:15:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 15 | fprintf(stderr, "testID:"uint32FMT" - empty sequence\n", testID); | ^ /<>/libseq/test-seqCache.C:22:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 22 | fprintf(stderr, "testID:"uint32FMT" - header differs '%s' vs '%s'\n", testID, S->header(), correctSequence[sid].header); | ^ /<>/libseq/test-seqCache.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:26:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:26:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "testID:"uint32FMT" - header length differs "uint32FMT" vs "uint32FMT"\n", testID, S->headerLength(), correctSequence[sid].headerLength); | ^ /<>/libseq/test-seqCache.C:30:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 30 | fprintf(stderr, "testID:"uint32FMT" - sequence differs\n", testID); | ^ /<>/libseq/test-seqCache.C:34:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:34:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:34:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs strlen "uint32FMT" vs "uint32FMT"\n", testID, (uint32)strlen(S->sequence()), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ /<>/libseq/test-seqCache.C:38:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | fprintf(stderr, "testID:"uint32FMT" - sequence length differs "uint32FMT" vs "uint32FMT"\n", testID, S->sequenceLength(), correctSequence[sid].sequenceLength); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-seqStream.o -c /<>/libseq/test-seqStream.C In file included from /<>/libseq/test-seqStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-seqStream.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-seqStream.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-seqStream.C:17:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:17:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stderr, "testIndexing()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:55:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:55:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "lengthOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:60:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stderr, "startOf "uint32FMT" returned "uint64FMT", not correct "uint64FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:65:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "IIDOf "uint32FMT" returned "uint32FMT", not correct "uint32FMT"\n", | ^ /<>/libseq/test-seqStream.C:74:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:74:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:74:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stderr, "sequenceNumberOfPosition "uint64FMT" returned "uint32FMT", not correct "uint32FMT".\n", | ^ /<>/libseq/test-seqStream.C:95:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 95 | fprintf(stderr, "wrong separator at sep "uint32FMT" got %d expected %d\n", x, s, sep); | ^ /<>/libseq/test-seqStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:124:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:124:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- letter wrong got'%c'\n", sp, si, st, ch, chainSeq[sib]); | ^ /<>/libseq/test-seqStream.C:128:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:128:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqPos wrong got "uint32FMT"\n", sp, si, st, ch, chainSeqPos[sib]); | ^ /<>/libseq/test-seqStream.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- seqIID wrong got"uint32FMT"\n", sp, si, st, ch, chainSeqIID[sib]); | ^ /<>/libseq/test-seqStream.C:136:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:136:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "sp="uint32FMT" si="uint32FMT" st="uint64FMT" ch=%c -- strPos wrong got "uint64FMT"\n", sp, si, st, ch, chainStrPos[sib]); | ^ /<>/libseq/test-seqStream.C:145:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 145 | fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); | ^ /<>/libseq/test-seqStream.C:145:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 145 | fprintf(stderr, "iterated length wrong; sib="uint32FMT" sie="uint32FMT"\n", sib, sie); | ^ /<>/libseq/test-seqStream.C:159:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 159 | fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ /<>/libseq/test-seqStream.C:159:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 159 | fprintf(stderr, "testChaining()-- numSeq="uint32FMT" sep=%c sepLen="uint32FMT"\n", numSeq, sep, sepLen); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libseq/test-merStream.o -c /<>/libseq/test-merStream.C In file included from /<>/libseq/test-merStream.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libseq/seqCache.H:4, from /<>/libseq/test-merStream.C:3: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libseq/test-merStream.C:7: /<>/libseq/test-correctSequence.H:33:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stderr, "generateCorrectSequence()-- Using seed "uint32FMT"\n", seed); | ^ /<>/libseq/test-correctSequence.H:34:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-correctSequence.H:34:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(stderr, "generateCorrectSequence()-- Generating "uint32FMT" sequences of length "uint32FMT" to "uint32FMT"\n", numSeq, minLen, maxLen); | ^ /<>/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? [-Wcpp] 11 | #warning HOW DO WE TEST IF WE GET ALL THE MERS? | ^~~~~~~ /<>/libseq/test-merStream.C:33:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:33:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 33 | fprintf(stdout, "MS pos="uint32FMT" posInSeq="uint64FMT" posInStr="uint64FMT" seqNum="uint64FMT"\n", | ^ /<>/libseq/test-merStream.C:39:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(stdout, "MS pos="uint32FMT" failed '%s' != '%s'.\n", pos, testmer, seq + pos); | ^ /<>/libseq/test-merStream.C:124:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C:124:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C:124:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "mer stream position out of range; at "uint32FMT", range "uint32FMT"-"uint32FMT"\n", | ^ /<>/libseq/test-merStream.C: In function ‘int main(int, char**)’: /<>/libseq/test-merStream.C:223:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 223 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:225:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 225 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:228:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 228 | testMerStreamSimple(MS, 20, "GGGTCAACTCCGCCCGCACTCTAGC", SP); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:243:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 243 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:245:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 245 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/libseq/test-merStream.C:248:33: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 248 | testMerStreamSimple(MS, 20, "GATCACTCGCGCACTCTAGCA", SP); | ^~~~~~~~~~~~~~~~~~~~~~~ rm -f /<>/libseq/libseq.a && ar ruvs /<>/libseq/libseq.a /<>/libseq/fastaFile.o /<>/libseq/fastaStdin.o /<>/libseq/fastqFile.o /<>/libseq/fastqStdin.o /<>/libseq/seqStore.o /<>/libseq/sffFile.o /<>/libseq/seqFactory.o /<>/libseq/seqCache.o /<>/libseq/seqStream.o /<>/libseq/merStream.o /<>/libseq/test-seqCache.o /<>/libseq/test-seqStream.o /<>/libseq/test-merStream.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libseq/libseq.a a - /<>/libseq/fastaFile.o a - /<>/libseq/fastaStdin.o a - /<>/libseq/fastqFile.o a - /<>/libseq/fastqStdin.o a - /<>/libseq/seqStore.o a - /<>/libseq/sffFile.o a - /<>/libseq/seqFactory.o a - /<>/libseq/seqCache.o a - /<>/libseq/seqStream.o a - /<>/libseq/merStream.o a - /<>/libseq/test-seqCache.o a - /<>/libseq/test-seqStream.o a - /<>/libseq/test-merStream.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet.o -c /<>/libbio/alphabet.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet-acgtspace.o -c /<>/libbio/alphabet-acgtspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/alphabet-colorspace.o -c /<>/libbio/alphabet-colorspace.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/halign.o -c /<>/libbio/halign.c /<>/libbio/halign.c: In function ‘align_path’: /<>/libbio/halign.c:385:7: warning: ‘head2’ may be used uninitialized [-Wmaybe-uninitialized] 385 | if (head2) *tail = tail2; | ^~~~~ /<>/libbio/halign.c:163:32: note: ‘head2’ declared here 163 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/reversecomplement.o -c /<>/libbio/reversecomplement.c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libbio/kmer.o -c /<>/libbio/kmer.C In file included from /<>/libbio/kmer.H:28, from /<>/libbio/kmer.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/kmer.H:29: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f /<>/libbio/libbio.a && ar ruvs /<>/libbio/libbio.a /<>/libbio/alphabet.o /<>/libbio/alphabet-acgtspace.o /<>/libbio/alphabet-colorspace.o /<>/libbio/halign.o /<>/libbio/reversecomplement.o /<>/libbio/kmer.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libbio/libbio.a a - /<>/libbio/alphabet.o a - /<>/libbio/alphabet-acgtspace.o a - /<>/libbio/alphabet-colorspace.o a - /<>/libbio/halign.o a - /<>/libbio/reversecomplement.o a - /<>/libbio/kmer.o gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/file.o -c /<>/libutil/file.c /<>/libutil/file.c: In function ‘openFile’: /<>/libutil/file.c:382:9: warning: variable ‘isRW’ set but not used [-Wunused-but-set-variable] 382 | int isRW = 1; | ^~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/md5.o -c /<>/libutil/md5.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/palloc.o -c /<>/libutil/palloc.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/qsort_mt.o -c /<>/libutil/qsort_mt.c /<>/libutil/qsort_mt.c: In function ‘qsort_algo’: /<>/libutil/qsort_mt.c:264:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 264 | pthread_t id; | ^~ /<>/libutil/qsort_mt.c: In function ‘qsort_thread’: /<>/libutil/qsort_mt.c:370:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] 370 | pthread_t id; | ^~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/util.o -c /<>/libutil/util.c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bigQueue.o -c /<>/libutil/bigQueue.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bigQueue.H:4, from /<>/libutil/bigQueue.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bigQueue.C: In member function ‘void bigQueue::mergeTemporaryFiles()’: /<>/libutil/bigQueue.C:204:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fread(thing, _objectSize, 1, _temporaryFiles[i]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bigQueue.C:255:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 255 | fread(thing, _objectSize, 1, _temporaryFiles[fileid]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bigQueue.C: In member function ‘bool bigQueue::next()’: /<>/libutil/bigQueue.C:302:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 302 | fread(_thingBuffer, _objectSize, 1, _temporaryFiles[0]); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bitPackedArray.o -c /<>/libutil/bitPackedArray.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bitPackedArray.C:8: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bitPackedArray.C:35:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", | ^ /<>/libutil/bitPackedArray.C:35:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stderr, "bitPackedArray::get()-- element index "uint64FMT" is out of range, only "uint64FMT" elements.\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/bitPackedFile.o -c /<>/libutil/bitPackedFile.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/bitPackedFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/bitPackedFile.C:168:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 168 | fprintf(stderr, " at position "uint64HEX"\n", file_offset); | ^ /<>/libutil/bitPackedFile.C:367:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 367 | fprintf(stderr, "bitPackedFile::seekNormal() '%s' seek to pos="uint64FMT" failed: %s\n", | ^ /<>/libutil/bitPackedFile.C:376:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 376 | fprintf(stderr, "bitPackedFile::seekNormal() '%s' read of "uint64FMT" bytes failed': %s\n", | ^ /<>/libutil/bitPackedFile.C: In constructor ‘bitPackedFile::bitPackedFile(const char*, uint64, bool)’: /<>/libutil/bitPackedFile.C:109:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 109 | write(_file, t, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C:110:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 110 | write(_file, &at, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C:111:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | write(_file, &bt, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/bitPackedFile.C: In member function ‘void bitPackedFile::flushDirty()’: /<>/libutil/bitPackedFile.C:232:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | write(_file, _bfr, sizeof(uint64) * _bfrmax); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/fibonacciNumbers.o -c /<>/libutil/fibonacciNumbers.C In file included from /<>/libutil/fibonacciNumbers.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/readBuffer.o -c /<>/libutil/readBuffer.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/readBuffer.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/readBuffer.C:132:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ /<>/libutil/readBuffer.C:132:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "readBuffer::fillBuffer()-- only read "uint64FMT" bytes, couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ /<>/libutil/readBuffer.C:165:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stderr, "readBuffer()-- '%s' couldn't seek to position "int64FMT": %s\n", | ^ /<>/libutil/readBuffer.C:228:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(stderr, "readBuffer()-- couldn't read "uint64FMT" bytes from '%s': n%s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/recordFile.o -c /<>/libutil/recordFile.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/recordFile.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/recordFile.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 227 | fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", | ^ /<>/libutil/recordFile.C:227:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 227 | fprintf(stderr, "recordFile::seek() '%s' seek to record="uint64FMT" at fileposition="uint64FMT" failed: %s\n", | ^ /<>/libutil/recordFile.C:233:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C:233:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C:233:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 233 | fprintf(stderr, "recordFile::seek() '%s' read of "uint64FMT" bytes failed at record "uint64FMT", fileposition "uint64FMT"': %s\n", | ^ /<>/libutil/recordFile.C: In constructor ‘recordFile::recordFile(const char*, uint32, uint32, char)’: /<>/libutil/recordFile.C:68:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | write(_file, &recordFileMagic1, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:69:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | write(_file, &recordFileMagic2, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:70:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | write(_file, &_numRecords, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:71:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | write(_file, &_recordSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:72:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | write(_file, &_headerSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:73:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | write(_file, _header, sizeof(char) * _headerSize); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:112:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 112 | read(_file, &m1, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:113:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 113 | read(_file, &m2, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:114:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 114 | read(_file, &_numRecords, sizeof(uint64)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:115:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | read(_file, &_recordSize, sizeof(uint32)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:116:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 116 | read(_file, &_headerSize, sizeof(uint32)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:117:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | read(_file, _header, sizeof(char) * _headerSize); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In destructor ‘recordFile::~recordFile()’: /<>/libutil/recordFile.C:151:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | write(_file, &recordFileMagic1, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:152:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | write(_file, &recordFileMagic2, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:153:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | write(_file, &_numRecords, sizeof(uint64)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:154:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | write(_file, &_recordSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | write(_file, &_headerSize, sizeof(uint32)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C:156:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | write(_file, _header, sizeof(char) * _headerSize); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In member function ‘void recordFile::flushDirty()’: /<>/libutil/recordFile.C:197:8: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | write(_file, _bfr, _recordSize * _rec); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/recordFile.C: In member function ‘void recordFile::seek(uint64, bool)’: /<>/libutil/recordFile.C:231:7: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | read(_file, _bfr, _recordSize * _bfrmax); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/speedCounter.o -c /<>/libutil/speedCounter.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/speedCounter.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/sweatShop.o -c /<>/libutil/sweatShop.C In file included from /<>/libutil/util++.H:4, from /<>/libutil/sweatShop.H:7, from /<>/libutil/sweatShop.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libutil/sweatShop.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); | ^ /<>/libutil/sweatShop.C:127:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "sweatShop::setThreadData()-- worker ID "uint32FMT" more than number of workers="uint32FMT"\n", t, _numberOfWorkers), exit(1); | ^ /<>/libutil/sweatShop.C:390:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:390:135: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" loaded; "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" written; "uint64FMTW(8)" queued for output)\r", | ^ /<>/libutil/sweatShop.C:425:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:425:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:425:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 425 | fprintf(stderr, " %6.1f/s - "uint64FMTW(8)" queued for compute; "uint64FMTW(8)" finished; "uint64FMTW(8)" queued for output)\n", | ^ /<>/libutil/sweatShop.C:560:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 560 | fprintf(stderr, "sweatShop::run()-- Failed to launch worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); | ^ /<>/libutil/sweatShop.C:580:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 580 | fprintf(stderr, "sweatShop::run()-- Failed to join worker thread "uint32FMT": %s.\n", i, strerror(err)), exit(1); | ^ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/dict.o -c /<>/libutil/kazlib/dict.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/except.o -c /<>/libutil/kazlib/except.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/hash.o -c /<>/libutil/kazlib/hash.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/list.o -c /<>/libutil/kazlib/list.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/kazlib/sfx.o -c /<>/libutil/kazlib/sfx.c rm -f /<>/libutil/libutil.a && ar ruvs /<>/libutil/libutil.a /<>/libutil/file.o /<>/libutil/md5.o /<>/libutil/palloc.o /<>/libutil/qsort_mt.o /<>/libutil/util.o /<>/libutil/bigQueue.o /<>/libutil/bitPackedArray.o /<>/libutil/bitPackedFile.o /<>/libutil/fibonacciNumbers.o /<>/libutil/readBuffer.o /<>/libutil/recordFile.o /<>/libutil/speedCounter.o /<>/libutil/sweatShop.o /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/kazlib/dict.o /<>/libutil/kazlib/except.o /<>/libutil/kazlib/hash.o /<>/libutil/kazlib/list.o /<>/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/libutil.a a - /<>/libutil/file.o a - /<>/libutil/md5.o a - /<>/libutil/palloc.o a - /<>/libutil/qsort_mt.o a - /<>/libutil/util.o a - /<>/libutil/bigQueue.o a - /<>/libutil/bitPackedArray.o a - /<>/libutil/bitPackedFile.o a - /<>/libutil/fibonacciNumbers.o a - /<>/libutil/readBuffer.o a - /<>/libutil/recordFile.o a - /<>/libutil/speedCounter.o a - /<>/libutil/sweatShop.o a - /<>/libutil/mt19937ar/mt19937ar.o a - /<>/libutil/kazlib/dict.o a - /<>/libutil/kazlib/except.o a - /<>/libutil/kazlib/hash.o a - /<>/libutil/kazlib/list.o a - /<>/libutil/kazlib/sfx.o g++ -Wl,-z,relro -Wl,-z,now -o ESTmapper/terminate ESTmapper/terminate.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeature.o -c atac-driver/libatac/atacFeature.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFeature.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeature.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.C:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacFeature.C:109:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "Feature longer than sequence (by "uint32FMT"bp): seqLen="uint32FMTW(8)" %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeatureList.o -c atac-driver/libatac/atacFeatureList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFeatureList.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFeatureList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFeatureList.C: In member function ‘void atacFeatureList::add(atacFeature&)’: atac-driver/libatac/atacFeatureList.C:50:52: warning: operation on ‘((atacFeatureList*)this)->atacFeatureList::_featuresLen’ may be undefined [-Wsequence-point] 50 | _features[_featuresLen].featureiid = _featuresLen++; | ~~~~~~~~~~~~^~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFile.o -c atac-driver/libatac/atacFile.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFile.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFile.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFile.C: In member function ‘void atacFileBase::readHeader(char*, FILE*)’: atac-driver/libatac/atacFile.C:255:7: warning: the address of ‘atacFileBase::_fileA’ will never be NULL [-Waddress] 255 | if (_fileA && _fileA[0]) { | ^~~~~~ atac-driver/libatac/atac.H:59:22: note: ‘atacFileBase::_fileA’ declared here 59 | char _fileA[1024]; // The name of our genome files | ^~~~~~ atac-driver/libatac/atacFile.C:262:7: warning: the address of ‘atacFileBase::_fileB’ will never be NULL [-Waddress] 262 | if (_fileB && _fileB[0]) { | ^~~~~~ atac-driver/libatac/atac.H:60:22: note: ‘atacFileBase::_fileB’ declared here 60 | char _fileB[1024]; | ^~~~~~ atac-driver/libatac/atacFile.C: In member function ‘atacMatch* atacFileStream::nextMatch(char)’: atac-driver/libatac/atacFile.C:76:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 76 | fgets(_inLine, 1024, _inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘atacFeature* atacFileStream::nextFeature(char*)’: atac-driver/libatac/atacFile.C:105:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | fgets(_inLine, 1024, _inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In constructor ‘atacFile::atacFile(const char*)’: atac-driver/libatac/atacFile.C:171:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fgets(inLine, 1024, inFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C: In member function ‘void atacFileBase::readHeader(char*, FILE*)’: atac-driver/libatac/atacFile.C:206:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 206 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFile.C:245:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFileStreamMerge.o -c atac-driver/libatac/atacFileStreamMerge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacFileStreamMerge.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacFileStreamMerge.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacFileStreamMerge.C: In member function ‘void atacFileStreamMerge::addFile(const char*)’: atac-driver/libatac/atacFileStreamMerge.C:86:11: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class afsm’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 86 | memcpy(F, _files, sizeof(afsm) * _filesLen); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/libatac/atacFileStreamMerge.C:27:7: note: ‘class afsm’ declared here 27 | class afsm { | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatch.o -c atac-driver/libatac/atacMatch.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atac.H:26, from atac-driver/libatac/atacMatch.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacMatch.C:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:131:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 1: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C:139:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "Match longer than sequence (by "uint32FMT"bp) in 2: seqLen="uint32FMTW(8)" %s\n", | ^ atac-driver/libatac/atacMatch.C: In constructor ‘atacMatch::atacMatch(char*, char*, uint32, char*, uint32, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: atac-driver/libatac/atacMatch.C:50:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 50 | strncpy(matchuid, muid, 16); | ^ atac-driver/libatac/atacMatch.C: In member function ‘void atacMatch::decode(char*)’: atac-driver/libatac/atacMatch.C:100:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 16 equals destination size [-Wstringop-truncation] 100 | strncpy(matchuid, S[2], 16); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchList.o -c atac-driver/libatac/atacMatchList.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacMatchList.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchList.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchOrder.o -c atac-driver/libatac/atacMatchOrder.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/libatac/atacMatchOrder.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from atac-driver/libatac/atac.H:30, from atac-driver/libatac/atacMatchOrder.C:24: atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from atac-driver/libatac/atac.H:34: atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from atac-driver/libatac/atac.H:37: atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/libatac/atacMatchOrder.C:38:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 38 | sprintf(n.matchuid, "merge"uint32FMT, mergeuid); | ^ rm -f atac-driver/libatac/libatac.a && ar ruvs atac-driver/libatac/libatac.a atac-driver/libatac/atacFeature.o atac-driver/libatac/atacFeatureList.o atac-driver/libatac/atacFile.o atac-driver/libatac/atacFileStreamMerge.o atac-driver/libatac/atacMatch.o atac-driver/libatac/atacMatchList.o atac-driver/libatac/atacMatchOrder.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating atac-driver/libatac/libatac.a a - atac-driver/libatac/atacFeature.o a - atac-driver/libatac/atacFeatureList.o a - atac-driver/libatac/atacFile.o a - atac-driver/libatac/atacFileStreamMerge.o a - atac-driver/libatac/atacMatch.o a - atac-driver/libatac/atacMatchList.o a - atac-driver/libatac/atacMatchOrder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap.o -c atac-driver/alignOverlap/overlap.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap.C:123:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 123 | fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); | ^ atac-driver/alignOverlap/overlap.C:123:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 123 | fprintf(stderr, "unmapped: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.unmapped.getSum(), statsB.unmapped.getSum()); | ^ atac-driver/alignOverlap/overlap.C:124:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:124:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 124 | fprintf(stderr, "unique mapping 1: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map1unique.getSum(), statsB.map1unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:125:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 125 | fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:125:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 125 | fprintf(stderr, "unique mapping 2: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.map2unique.getSum(), statsB.map2unique.getSum()); | ^ atac-driver/alignOverlap/overlap.C:126:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); | ^ atac-driver/alignOverlap/overlap.C:126:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 126 | fprintf(stderr, "different: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.different.getSum(), statsB.different.getSum()); | ^ atac-driver/alignOverlap/overlap.C:127:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); | ^ atac-driver/alignOverlap/overlap.C:127:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "wild diff: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.wilddiff.getSum(), statsB.wilddiff.getSum()); | ^ atac-driver/alignOverlap/overlap.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); | ^ atac-driver/alignOverlap/overlap.C:128:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "same: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.same.getSum(), statsB.same.getSum()); | ^ atac-driver/alignOverlap/overlap.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); | ^ atac-driver/alignOverlap/overlap.C:129:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "inconsistent: A:"uint32FMTW(10)" B:"uint32FMTW(10)"\n", statsA.inconsistent.getSum(), statsB.inconsistent.getSum()); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-find.o -c atac-driver/alignOverlap/overlap-find.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-find.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap-find.C:45:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); | ^ atac-driver/alignOverlap/overlap-find.C:45:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | fprintf(stderr, "isolated Unique: map1: "uint32FMT" map2: "uint32FMT"\n", sumA, sumB); | ^ atac-driver/alignOverlap/overlap-find.C:59:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(stderr, "got invalid type; "uint32FMT" -- %c\n", type, (char)type), exit(1); | ^ atac-driver/alignOverlap/overlap-find.C:91:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); | ^ atac-driver/alignOverlap/overlap-find.C:91:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "%s: "uint32FMT" len:"uint32FMT"\n", msg, count, len); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-matchTree.o -c atac-driver/alignOverlap/overlap-matchTree.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-matchTree.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-printAnno.o -c atac-driver/alignOverlap/overlap-printAnno.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-printAnno.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:46:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(F, "%c "uint32FMTW(4)":"uint32FMTW(09)"-"uint32FMTW(09)"["uint32FMTW(6)"] ", | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:63:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 63 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:65:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m1->iid1, m1->pos1 + off1, m1->pos1 + off1 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:69:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:85:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 85 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid2, sta, end); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:87:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", m2->iid1, m2->pos1 + off2, m2->pos1 + off2 + len); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ atac-driver/alignOverlap/overlap-printAnno.C:91:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(F, "("uint32FMTW(8)": "uint32FMTW(9)"-"uint32FMTW(9)") ", uint32ZERO, uint32ZERO, uint32ZERO); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-sort.o -c atac-driver/alignOverlap/overlap-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-sort.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ ln -f /<>/atac-driver/alignOverlap/overlap-process.C /<>/atac-driver/alignOverlap/overlap-process1.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -DINDEX=1 -DNAME=process1 -DPOS1=pos1 -DPOS2=pos2 -DLEN2=len2 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process1.o -c atac-driver/alignOverlap/overlap-process1.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process1.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ ln -f /<>/atac-driver/alignOverlap/overlap-process.C /<>/atac-driver/alignOverlap/overlap-process2.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -DINDEX=2 -DNAME=process2 -DPOS1=pos2 -DPOS2=pos1 -DLEN2=len1 -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process2.o -c atac-driver/alignOverlap/overlap-process2.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/alignOverlap/overlap.H:26, from atac-driver/alignOverlap/overlap-process2.C:19: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/alignOverlap/overlap.H:28: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ In file included from atac-driver/alignOverlap/overlap.H:41: atac-driver/alignOverlap/overlap-span.H:75:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ atac-driver/alignOverlap/overlap-span.H:75:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | fprintf(stderr, "span_t::split()-- _beg="uint32FMT" _end="uint32FMT" postition="uint32FMT"?\n", _beg, _end, position); | ^ In file included from atac-driver/alignOverlap/overlap.H:45: atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]); | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/alignOverlap/overlap atac-driver/alignOverlap/overlap.o atac-driver/alignOverlap/overlap-find.o atac-driver/alignOverlap/overlap-matchTree.o atac-driver/alignOverlap/overlap-printAnno.o atac-driver/alignOverlap/overlap-sort.o atac-driver/alignOverlap/overlap-process1.o atac-driver/alignOverlap/overlap-process2.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/gapShifter.o -c atac-driver/gapShifter/gapShifter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/gapShifter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:203:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:203:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:223:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 223 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:223:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 223 | fprintf(stderr, "iid1 "uint32FMT", iid2 "uint32FMT"\n", iid1, iid2); | ^ atac-driver/gapShifter/gapShifter.C:510:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:510:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 510 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:515:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:515:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 515 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:523:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:523:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 523 | fprintf(logFile, "%s\t%s\t%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\t", | ^ atac-driver/gapShifter/gapShifter.C:528:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:528:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 528 | fprintf(logFile, "%s:"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t->\t"uint32FMT"\t"uint32FMT"\n", | ^ atac-driver/gapShifter/gapShifter.C:738:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 738 | fprintf(stderr, "Shifting gaps of length at most "uint32FMT" bases, to the %s.\n", gapLimit, (shiftRight) ? "right" : "left"); | ^ atac-driver/gapShifter/gapShifter.C:750:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 750 | fprintf(stderr, "numShifted = "uint32FMT"\n", numShifted); | ^ atac-driver/gapShifter/gapShifter.C:751:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 751 | fprintf(stderr, "numNotShifted = "uint32FMT"\n", numNotShifted); | ^ atac-driver/gapShifter/gapShifter.C:752:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 752 | fprintf(stderr, "numDiffSeq = "uint32FMT"\n", numDiffSeq); | ^ atac-driver/gapShifter/gapShifter.C:753:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 753 | fprintf(stderr, "numDiffOri = "uint32FMT"\n", numDiffOri); | ^ atac-driver/gapShifter/gapShifter.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 754 | fprintf(stderr, "numZeroLen = "uint32FMT"\n", numZeroLen); | ^ atac-driver/gapShifter/gapShifter.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 755 | fprintf(stderr, "numOutOfOrder = "uint32FMT"\n", numOutOfOrder); | ^ atac-driver/gapShifter/gapShifter.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 756 | fprintf(stderr, "numNotAdjacent = "uint32FMT"\n", numNotAdjacent); | ^ atac-driver/gapShifter/gapShifter.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 757 | fprintf(stderr, "numNoGap = "uint32FMT"\n", numNoGap); | ^ atac-driver/gapShifter/gapShifter.C:758:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 758 | fprintf(stderr, "numGapTooBig = "uint32FMT"\n", numGapTooBig); | ^ atac-driver/gapShifter/gapShifter.C:759:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 759 | fprintf(stderr, "numOverlapping = "uint32FMT"\n", numOverlapping); | ^ atac-driver/gapShifter/gapShifter.C:762:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); | ^ atac-driver/gapShifter/gapShifter.C:762:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "amountShifted["uint32FMT"] = "uint32FMT" (number of gaps shifted by [number of bases])\n", x, amountShifted[x]); | ^ atac-driver/gapShifter/gapShifter.C:764:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 764 | fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); | ^ atac-driver/gapShifter/gapShifter.C:764:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 764 | fprintf(stderr, "shifted "uint32FMT" out of "uint32FMT" (%6.2f%%)\n", gapsShifted, ML.numMatches(), (double)gapsShifted / (double)ML.numMatches() * 100.0); | ^ atac-driver/gapShifter/gapShifter.C:780:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/gapShifter.C:780:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 780 | fprintf(stdout, "M u %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/gapShifter atac-driver/gapShifter/gapShifter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractSequence.o -c atac-driver/gapShifter/extractSequence.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/gapShifter/extractSequence.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/extractSequence.C:110:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:110:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:110:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(Aoutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ atac-driver/gapShifter/extractSequence.C:121:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(Boutput, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" match %s(%s)\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractSequence.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractUnmapped.o -c atac-driver/gapShifter/extractUnmapped.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/extractUnmapped.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/extractUnmapped.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:105:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 105 | fprintf(output, "%s extracted from iid "uint32FMT" pos "uint32FMT" "uint32FMT" between match %s(%s) and %s(%s)\n", | ^ atac-driver/gapShifter/extractUnmapped.C:583:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 583 | fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); | ^ atac-driver/gapShifter/extractUnmapped.C:583:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 583 | fprintf(stderr, "Done masking. "uint32FMT" in A, "uint32FMT" in B.\n", stats[0], stats[1]); | ^ atac-driver/gapShifter/extractUnmapped.C: In function ‘int main(int, char**)’: atac-driver/gapShifter/extractUnmapped.C:541:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 541 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/extractUnmapped.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/coalesceMatches.o -c atac-driver/gapShifter/coalesceMatches.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/coalesceMatches.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/coalesceMatches.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/coalesceMatches.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/correctGaps.o -c atac-driver/gapShifter/correctGaps.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/correctGaps.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/correctGaps.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/correctGaps.C:138:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 138 | fprintf(logFile, "HEY! F gap of size "uint32FMT" not in a run?\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:200:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(logFile, "HEY! R gap of size "uint32FMT" not in a run?\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:222:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(logFile, "CLOSE "uint32FMT"----------------------------------------\n", gap1); | ^ atac-driver/gapShifter/correctGaps.C:235:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ atac-driver/gapShifter/correctGaps.C:235:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ atac-driver/gapShifter/correctGaps.C:235:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 235 | fprintf(logFile, "At gapSize="uint32FMT" closed "uint32FMT" f-gaps and "uint32FMT" r-gaps.\n", gapsize, fgaps, rgaps); | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/correctGaps atac-driver/gapShifter/correctGaps.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/testAtac.o -c atac-driver/gapShifter/testAtac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/testAtac.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/testAtac.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/testAtac.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity: ", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/testAtac atac-driver/gapShifter/testAtac.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/cleanAtac.o -c atac-driver/gapShifter/cleanAtac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/cleanAtac.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/cleanAtac.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/cleanAtac.C:149:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 149 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", | ^ atac-driver/gapShifter/cleanAtac.C:149:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 149 | fprintf(stderr, "match "uint32FMT" is only %6.2f%% identity and "uint32FMT" long: ", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/cleanAtac.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/projectFeatures.o -c atac-driver/gapShifter/projectFeatures.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/gapShifter/projectFeatures.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/gapShifter/projectFeatures.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/gapShifter/projectFeatures.C:72:2: warning: #warning BROKEN [-Wcpp] 72 | #warning BROKEN | ^~~~~~~ atac-driver/gapShifter/projectFeatures.C:132:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:132:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "M u Aprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:146:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 146 | fprintf(stdout, "M u Bprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:171:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "M u Cprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:112: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/gapShifter/projectFeatures.C:192:124: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u Dprojected"uint32FMT" %s.%s %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/projectFeatures.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/lengthFilter/lengthFilter.o -c atac-driver/lengthFilter/lengthFilter.C In file included from /<>/libutil/util++.H:4, from atac-driver/lengthFilter/lengthFilter.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ atac-driver/lengthFilter/lengthFilter.C:46:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | sprintf(inLine, "/globalMatchMinSize="uint32FMT"\n", minLength); | ^ atac-driver/lengthFilter/lengthFilter.C:57:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 57 | fprintf(stdout, "/globalMatchMinSize="uint32FMT"\n", minLength); | ^ atac-driver/lengthFilter/lengthFilter.C:114:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:114:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stderr, "lengthFilter: Discarded "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C:116:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "lengthFilter: Saved "uint32FMTW(8)" matches with total length "uint32FMTW(10)", %7.3f%% of the sequence in matches.\n", | ^ atac-driver/lengthFilter/lengthFilter.C: In function ‘void readHeader(char*, FILE*, uint32&, FILE*)’: atac-driver/lengthFilter/lengthFilter.C:34:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 34 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C:53:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | fgets(inLine, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~~~ atac-driver/lengthFilter/lengthFilter.C: In function ‘int main(int, char**)’: atac-driver/lengthFilter/lengthFilter.C:111:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 111 | fgets(inLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/lengthFilter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender.o -c atac-driver/matchExtender/matchExtender.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/matchExtender/matchExtender.C:27: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/matchExtender/matchExtender.C:192:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:192:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 192 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" 1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ atac-driver/matchExtender/matchExtender.C:201:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stdout, "M u %s . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" -1\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-dump.o -c atac-driver/matchExtender/matchExtender-dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-dump.C:25: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/match.H:8, from atac-driver/matchExtender/matchExtender-dump.C:26: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:31:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 31 | fprintf(out, "%s: ID:%s range1:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT")\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ atac-driver/matchExtender/matchExtender-dump.C:34:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 34 | fprintf(out, "%s ID:%s range2:"uint32FMT","uint32FMT" _pos="uint32FMT" (seqlen="uint32FMT") diag:"uint32FMT" %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-func.o -c atac-driver/matchExtender/matchExtender-func.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/matchExtender/matchExtender-func.C:26: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/matchExtender/matchExtender-func.C:27: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/matchExtender/matchExtender atac-driver/matchExtender/matchExtender.o atac-driver/matchExtender/matchExtender-dump.o atac-driver/matchExtender/matchExtender-func.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/mismatchCounter/mismatchCounter.o -c atac-driver/mismatchCounter/mismatchCounter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from atac-driver/mismatchCounter/mismatchCounter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/mismatchCounter/mismatchCounter.C:25: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/mismatchCounter/mismatchCounter.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stderr, "globalSequence = "uint32FMT"\n", globalSequence); | ^ atac-driver/mismatchCounter/mismatchCounter.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 198 | fprintf(stderr, "globalMismatches = "uint32FMT"\n", globalMismatches); | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/mismatchCounter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/statsGenerator/statsGenerator.o -c atac-driver/statsGenerator/statsGenerator.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/statsGenerator/statsGenerator.C:26: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/statsGenerator/statsGenerator.C:91:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stdout, "histogram %s "uint32FMT" items %8.3f average %8.3f std.dev.\n", | ^ atac-driver/statsGenerator/statsGenerator.C:102:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 102 | fprintf(out, uint64FMT" "uint32FMT"\n", i * _b, _h[i]); | ^ atac-driver/statsGenerator/statsGenerator.C:103:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); | ^ atac-driver/statsGenerator/statsGenerator.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(out, ">"uint64FMT" "uint32FMT"\n", _m, _l); | ^ atac-driver/statsGenerator/statsGenerator.C:133:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 133 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:133:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 133 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:136:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(out, "plot [0:"uint64FMT"][0:"uint64FMT"] \"%s.%s.histogramdat\" using 2 with lines\n", | ^ atac-driver/statsGenerator/statsGenerator.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # all letters, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:193:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:193:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "totalLength %s "uint64FMT" %s "uint64FMT" # ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:282:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 282 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifa.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:283:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 283 | fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifa.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:285:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 285 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifa.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:286:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifa.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:287:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 287 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifa, offset1, A)); | ^ atac-driver/statsGenerator/statsGenerator.C:289:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 289 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mma.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:290:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 290 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mma.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:291:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 291 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mma, offset1, A)); | ^ atac-driver/statsGenerator/statsGenerator.C:295:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)ifb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:296:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stdout, "totalLength "uint64FMT" # sum of lengths of all features\n", ifb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:298:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 298 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions\n", (uint64)ifb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:299:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, including N\n", ifb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:300:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 300 | fprintf(stdout, "coveredLength "uint64FMT" # sequence covered by a feature, ACGT only\n", tandemRepeatACGTLength(ifb, offset2, B)); | ^ atac-driver/statsGenerator/statsGenerator.C:302:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 302 | fprintf(stdout, "numberOfItems "uint64FMT" # after merging overlapping regions, only in matches\n", (uint64)mmb.numberOfIntervals()); | ^ atac-driver/statsGenerator/statsGenerator.C:303:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 303 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, including N\n", mmb.sumOfLengths()); | ^ atac-driver/statsGenerator/statsGenerator.C:304:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 304 | fprintf(stdout, "inMatches "uint64FMT" # sequence covered by a feature and in a match, ACGT only\n", tandemRepeatACGTLength(mmb, offset2, B)); | ^ atac-driver/statsGenerator/statsGenerator.C:335:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 335 | fprintf(stdout, "numberOfItems "uint64FMT"\n", (uint64)matches.numberOfMatches()); | ^ atac-driver/statsGenerator/statsGenerator.C:337:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 337 | fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", | ^ atac-driver/statsGenerator/statsGenerator.C:337:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 337 | fprintf(stdout, "matchLength %s "uint64FMT" %s "uint64FMT" # Sum of lengths of sequence in matches\n", | ^ atac-driver/statsGenerator/statsGenerator.C:349:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 349 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:349:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 349 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:353:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 353 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", | ^ atac-driver/statsGenerator/statsGenerator.C:353:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 353 | fprintf(stdout, "coveredLength %s "uint64FMT" %s "uint64FMT" # sequence covered by a match, ACGT only (new)\n", | ^ atac-driver/statsGenerator/statsGenerator.C:409:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 409 | fprintf(out, uint64FMT" "uint32FMT"\n", n, n50[iter-1]); | ^ atac-driver/statsGenerator/statsGenerator.C:507:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:82: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:507:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 507 | fprintf(stdout, "chrCoveredLength["uint32FMTW(2)"] %s "uint64FMT" "uint64FMT" %6.2f%% "uint64FMT" "uint64FMT" %6.2f%% # seqCov, totalSeq for both ALL and ACGTonly\n", | ^ atac-driver/statsGenerator/statsGenerator.C:516:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 516 | sprintf(label, "chr"uint32FMTW(02)"full", c); | ^ atac-driver/statsGenerator/statsGenerator.C:520:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | sprintf(label, "chr"uint32FMTW(02)"acgt", c); | ^ atac-driver/statsGenerator/statsGenerator.C:628:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 628 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:628:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 628 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, including N\n", | ^ atac-driver/statsGenerator/statsGenerator.C:631:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 631 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C:631:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 631 | fprintf(stdout, "runMissingFull %s "uint64FMT" %s "uint64FMT" # sequence in run, not covered, ACGT only\n", | ^ atac-driver/statsGenerator/statsGenerator.C: In function ‘void tandemRepeatStats(atacFileStream&, atacFileStream&, atacFile&, seqCache*, seqCache*)’: atac-driver/statsGenerator/statsGenerator.C:267:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 267 | while ((f = featuresA.nextFeature("tr")) != 0L) | ^~~~ atac-driver/statsGenerator/statsGenerator.C:269:37: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 269 | while ((f = featuresB.nextFeature("tr")) != 0L) | ^~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:29: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 99 | sprintf(filename, "%s.%s.histogramdat", prefix, label); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from atac-driver/statsGenerator/statsGenerator.C:21: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::dump(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:99:12, inlined from ‘void histogram::dump(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:95:14, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:517:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:127:29: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 127 | sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); | ^~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::plot(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:127:12, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:518:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:140:37: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 140 | sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); | ^~ ...... 518 | hist1full[c]->plot(prefix, label); | ~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::plot(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:140:12, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:518:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:99:29: warning: ‘.histogramdat’ directive writing 13 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 99 | sprintf(filename, "%s.%s.histogramdat", prefix, label); | ^~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::dump(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:99:12, inlined from ‘void histogram::dump(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:95:14, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:521:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 1038) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:127:29: warning: ‘.histogram.gnuplot’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 127 | sprintf(filename, "%s.%s.histogram.gnuplot", prefix, label); | ^~~~~~~~~~~~~~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::plot(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:127:12, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:522:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 1043) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ atac-driver/statsGenerator/statsGenerator.C: In function ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’: atac-driver/statsGenerator/statsGenerator.C:140:37: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 140 | sprintf(filename, "gnuplot < %s.%s.histogram.gnuplot", prefix, label); | ^~ ...... 522 | hist1acgt[c]->plot(prefix, label); | ~~~~~ In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘void histogram::plot(const char*, const char*)’ at atac-driver/statsGenerator/statsGenerator.C:140:12, inlined from ‘void MappedByChromosome(atacFile&, atacMatchList&, seqCache*, seqCache*, char*)’ at atac-driver/statsGenerator/statsGenerator.C:522:23: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 1053) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/statsGenerator.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/uniqueFilter/uniqueFilter.o -c atac-driver/uniqueFilter/uniqueFilter.C In file included from /<>/libutil/util++.H:4, from atac-driver/uniqueFilter/uniqueFilter.C:23: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30, from atac-driver/uniqueFilter/uniqueFilter.C:24: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:226:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 226 | fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:226:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 226 | fprintf(stderr, "Sorting error -- have negative coverage (axis="uint32FMT" position="uint32FMT")!\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:236:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:236:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 236 | fprintf(stderr, "offsetsToCoverage()-- Found "uint64FMT" bases at coverage "uint32FMT" or greater.\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:370:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:370:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 370 | fprintf(stderr, "Got fwd intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:371:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 371 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:374:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 374 | fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:374:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 374 | fprintf(stdout, "--key1 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:379:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 379 | fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:379:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 379 | fprintf(stderr, "Got rev intersection on i="uint32FMT" matchNumber="uint32FMT"\n", i, matchNumber); | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:380:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 380 | fprintf(stdout, "--"uint32FMT" "uint32FMT" 1 "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:383:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 383 | fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:383:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 383 | fprintf(stdout, "--key2 beg="uint32FMT" end="uint32FMT"\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:418:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 418 | #define D08D2 uint32FMTW(8)" "uint32FMTW(8) | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:419:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 419 | #define KEY1THING "key1 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:420:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 420 | #define KEY2THING "key2 = "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" thing = "D08D2" "D08D2"\n" | ^ atac-driver/uniqueFilter/uniqueFilter.C:818:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 818 | fprintf(stderr, "match "uint32FMT" is outside the extent!\n", i); | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ atac-driver/uniqueFilter/uniqueFilter.C:828:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 828 | fprintf(stdout, "M %s %s."uint32FMT" . %s "uint32FMT" "uint32FMT" 1 %s "uint32FMT" "uint32FMT" %d\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/uniqueFilter.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/clumpMaker/clumpMaker.o -c atac-driver/clumpMaker/clumpMaker.C In file included from atac-driver/clumpMaker/clumpMaker.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15, from /<>/atac-driver/libatac/atac.H:26, from atac-driver/clumpMaker/clumpMaker.C:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/atac-driver/libatac/atac.H:30: /<>/atac-driver/libatac/atacMatch.H:64:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ /<>/atac-driver/libatac/atacMatch.H:64:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(f, "M %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT" %d %s:"uint32FMT" "uint32FMT" "uint32FMT" %d\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:34: /<>/atac-driver/libatac/atacFeature.H:71:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ /<>/atac-driver/libatac/atacFeature.H:71:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 71 | fprintf(f, "F %s %s %s %s:"uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ In file included from /<>/atac-driver/libatac/atac.H:37: /<>/atac-driver/libatac/fasta-accessor.H:12:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:12:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 12 | fprintf(stderr, "%s-- position "uint32FMT" larger than length "uint32FMT"\n", \ | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:107:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "FastAAccessor::setRange()-- base="uint32FMT" and length="uint32FMT" exceed sequence length of "uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:127:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "operator[]-- Tried to access to "uint32FMT", but range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:144:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | fprintf(stderr, "setPosition()-- Tried to set to "uint32FMT", but range is "uint32FMT"-"uint32FMT".\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:166:136: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 166 | fprintf(stderr, "FastAAccessor::extendLeft()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ /<>/atac-driver/libatac/fasta-accessor.H:180:137: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "FastAAccessor::extendRight()-- extend by "int32FMT" makes invalid: length is "uint32FMT", new range is "uint32FMT"-"uint32FMT"\n", | ^ atac-driver/clumpMaker/clumpMaker.C:341:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 341 | sprintf(C.matchuid, "clump"int32FMTW(06), cc); | ^ atac-driver/clumpMaker/clumpMaker.C:377:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 377 | sprintf(hits[mm].match.parentuid, "clump"int32FMTW(06), cc); | ^ atac-driver/clumpMaker/clumpMaker.C: In function ‘int main(int, char**)’: atac-driver/clumpMaker/clumpMaker.C:220:12: warning: variable ‘isSorted’ set but not used [-Wunused-but-set-variable] 220 | bool isSorted = false; | ^~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/clumpMaker.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_dpaligner.o -c atac-driver/chainer/localalign/GF_ALN_dpaligner.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_local.o -c atac-driver/chainer/localalign/GF_ALN_local.C atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Complement(char*, int)’: atac-driver/chainer/localalign/GF_ALN_local.C:146:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 146 | register char *s, *t; | ^ atac-driver/chainer/localalign/GF_ALN_local.C:146:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 146 | register char *s, *t; | ^ atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Align_Recursion(const char*, int, const char*, int, const Trapezoid*, int, int, int, double, int)’: atac-driver/chainer/localalign/GF_ALN_local.C:872:15: warning: variable ‘indel’ set but not used [-Wunused-but-set-variable] 872 | int j, mid, indel; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_overlap.o -c atac-driver/chainer/localalign/GF_ALN_overlap.C atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘void AVLinit()’: atac-driver/chainer/localalign/GF_ALN_overlap.C:93:17: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 93 | OutOfMemory("Candidate list"); | ^~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘AVLnode* NEW(AVLnode*, Candidate*, AVLnode*)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:125:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 125 | OutOfMemory("Candidate list"); | ^~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘Local_Overlap* Find_Local_Overlap(int, int, int, int, Local_Segment*, int, int, double)’: atac-driver/chainer/localalign/GF_ALN_overlap.C:396:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 396 | OutOfMemory("Overlap Trace Array"); | ^~~~~~~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C:662:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 662 | OutOfMemory("Overlap descriptor"); | ^~~~~~~~~~~~~~~~~~~~ atac-driver/chainer/localalign/GF_ALN_overlap.C:614:20: warning: variable ‘beg’ set but not used [-Wunused-but-set-variable] 614 | int best, end, beg; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_loverlapper.o -c atac-driver/chainer/localalign/GF_ALN_loverlapper.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o -c atac-driver/chainer/localalign/GF_ALN_pieceOlap.C g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python3.12 -o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -c atac-driver/chainer/localalign/localAlignerInterfacemodule.C atac-driver/chainer/localalign/localAlignerInterfacemodule.C: In function ‘PyObject* spam_syntenicSegments(PyObject*, PyObject*)’: atac-driver/chainer/localalign/localAlignerInterfacemodule.C:176:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 176 | char *Aseq = "undefined"; | ^~~~~~~~~~~ atac-driver/chainer/localalign/localAlignerInterfacemodule.C:179:18: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 179 | char *Bseq = "undefined"; | ^~~~~~~~~~~ rm -f atac-driver/chainer/localAlignerInterfacemodule.so && g++ -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/localAlignerInterfacemodule.so atac-driver/chainer/localalign/GF_ALN_dpaligner.o atac-driver/chainer/localalign/GF_ALN_local.o atac-driver/chainer/localalign/GF_ALN_overlap.o atac-driver/chainer/localalign/GF_ALN_loverlapper.o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/halign/halign.o -c atac-driver/chainer/halign/halign.C atac-driver/chainer/halign/halign.C: In function ‘int diff(const char*, const char*, int, int, int*, int*, int*, int*, int, int, int, int, int, int, int, int, int, EditScript**, EditScript**)’: atac-driver/chainer/halign/halign.C:295:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] 295 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:295:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] 295 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:345:9: warning: variable ‘cost1’ set but not used [-Wunused-but-set-variable] 345 | int cost1, cost2; | ^~~~~ atac-driver/chainer/halign/halign.C:345:16: warning: variable ‘cost2’ set but not used [-Wunused-but-set-variable] 345 | int cost1, cost2; | ^~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python3.12 -o atac-driver/chainer/halign/halignmodule.o -c atac-driver/chainer/halign/halignmodule.C rm -f atac-driver/chainer/halignmodule.so && g++ -Wl,-z,relro -Wl,-z,now -shared -o atac-driver/chainer/halignmodule.so atac-driver/chainer/halign/halign.o atac-driver/chainer/halign/halignmodule.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/atac-driver/libatac/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chimera/happy-clones-span-clumps.o -c atac-driver/chimera/happy-clones-span-clumps.C In file included from /<>/libutil/util++.H:4, from atac-driver/chimera/happy-clones-span-clumps.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ atac-driver/chimera/happy-clones-span-clumps.C:202:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "ERROR: increase scaffoldsMax "uint32FMT"\n", scaffoldid); | ^ atac-driver/chimera/happy-clones-span-clumps.C:229:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(stderr, "Deleted "uint32FMT" scaffolds with less than 2 clumps.\n", deleted); | ^ atac-driver/chimera/happy-clones-span-clumps.C:230:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 230 | fprintf(stderr, "Remain "uint32FMT" scaffolds with more than 2 clumps.\n", remain); | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:248:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" begin "uint32FMT" end "uint32FMT"\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:255:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and clump "uint32FMT" OVERLAP\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:263:85: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 263 | fprintf(stdout, "scaffold "uint32FMT" clump "uint32FMT" and "uint32FMT" confirmed by "uint32FMT" clones.\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:449:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 449 | fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT"\n", ina, A[7], scfa); | ^ atac-driver/chimera/happy-clones-span-clumps.C:453:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 453 | fprintf(stdout, "%s spans clump in scaffold %s,"uint32FMT" \n", inb, B[7], scfb); | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C:464:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 464 | fprintf(stdout, "scaffold %s,"uint32FMT" clump "uint32FMT" "uint32FMT" confirmed by %s\n", | ^ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:393:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 393 | char *uidmapName = "/project/huref6/assembly/fasta/HUREF6A.info"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘atacClumpCoordTree* buildCoordTree(char*)’: atac-driver/chimera/happy-clones-span-clumps.C:313:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 313 | fgets(inl, 1024, inf); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:340:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 340 | fgets(inl, 1024, inf); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C: In function ‘int main(int, char**)’: atac-driver/chimera/happy-clones-span-clumps.C:402:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 402 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:409:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fgets(L, 1024, F); | ~~~~~^~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:426:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 426 | fgets(ina, 1024, inf); chomp(ina); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:427:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 427 | fgets(inb, 1024, inf); chomp(inb); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:473:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 473 | fgets(ina, 1024, inf); chomp(ina); | ~~~~~^~~~~~~~~~~~~~~~ atac-driver/chimera/happy-clones-span-clumps.C:474:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 474 | fgets(inb, 1024, inf); chomp(inb); | ~~~~~^~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o atac-driver/chimera/happy-clones-span-clumps atac-driver/chimera/happy-clones-span-clumps.o /<>/atac-driver/libatac/libatac.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/seatac.o -c seatac/seatac.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/seatac.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/seatac.C:201:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:201:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | "O:"uint32FMTW(7)" S:"uint32FMTW(7)" I:"uint32FMTW(7)" T:"uint32FMTW(7)" (%5.1f%%; %8.3f/sec) Finish in %5.2f seconds.\r", | ^ seatac/seatac.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "\n"uint32FMTW(7)" sequences (%5.1f%%; %8.3f/sec) %5.2f seconds.\n", | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/configuration.o -c seatac/configuration.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/configuration.C:259:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(out, "/seatacNumSearchThreads="uint32FMT"\n", _numSearchThreads); | ^ seatac/configuration.C:260:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(out, "/seatacLoaderHighWaterMark="uint32FMT"\n", _loaderHighWaterMark); | ^ seatac/configuration.C:264:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 264 | fprintf(out, "/seatacWriterHighWaterMark="uint32FMT"\n", _writerHighWaterMark); | ^ seatac/configuration.C:267:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 267 | fprintf(out, "/seatacMaxDiagonal="uint32FMT"\n", _maxDiagonal); | ^ seatac/configuration.C:268:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 268 | fprintf(out, "/seatacMaxGap="uint32FMT"\n", _maxGap); | ^ seatac/configuration.C:269:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(out, "/seatacQsOverlap="uint32FMT"\n", _qsOverlap); | ^ seatac/configuration.C:270:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 270 | fprintf(out, "/seatacDsOverlap="uint32FMT"\n", _dsOverlap); | ^ seatac/configuration.C:271:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 271 | fprintf(out, "/seatacMinLength="uint32FMT"\n", _minLength + _merSize); | ^ seatac/configuration.C:272:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 272 | fprintf(out, "/seatacMerSize="uint32FMT"\n", _merSize); | ^ seatac/configuration.C:273:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 273 | fprintf(out, "/seatacMerSkip="uint32FMT"\n", _merSkip); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/encodedQuery.o -c seatac/encodedQuery.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/encodedQuery.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix.o -c seatac/hitMatrix.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-search.o -c seatac/thr-search.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/thr-search.C:3:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:3:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:3:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 3 | char const *srchGbye = "[%ld] computed: "uint64FMTW(8)" blocked: "uint64FMTW(4)"/"uint64FMTW(4)" encodeTime: %7.2f searchTime: %7.2f processTime: %7.2f\n"; | ^ seatac/thr-search.C:130:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); | ^ seatac/thr-search.C:130:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, uint64FMT" Blocked by output (idx = "uint32FMT", outputPos = "uint32FMT").\n", (long)U, idx, outputPos); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-loader.o -c seatac/thr-loader.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-loader.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/thr-loader.C: In function ‘void* loaderThread(void*)’: seatac/thr-loader.C:68:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 68 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/thr-deadlock.o -c seatac/thr-deadlock.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/seatac.H:20, from seatac/thr-deadlock.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/seatac.H:25: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10, from seatac/seatac.H:27: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/hitMatrix-sort.o -c seatac/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seatac/hitMatrix.H:8, from seatac/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/hitMatrix.H:9: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seatac/hitMatrix.H:10: seatac/filterObj.H:148:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:148:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT" bytes.\n", theOutputPos, theOutputMax); | ^ seatac/filterObj.H:157:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:157:111: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | "M x ############ . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filterObj.H:212:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "WARNING: there isn't enough space in the match to insert the match id "uint64FMT" '%s'!\n", | ^ seatac/hitMatrix.H:84:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/hitMatrix.H:84:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seatac/filterObj.H: In member function ‘void filterObj::addHit(char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/filterObj.H:146:21: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 146 | } catch (std::bad_alloc) { | ^~~~~~~~~ seatac/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seatac/hitMatrix.H:82:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 82 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-fasta.o -c /<>/libkmer/existDB-create-from-fasta.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-fasta.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-fasta.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromFastA()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | fprintf(stderr, "existDB::createFromFastA()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "existDB::createFromFastA()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ /<>/libkmer/existDB-create-from-fasta.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-fasta.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-fasta.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-meryl.o -c /<>/libkmer/existDB-create-from-meryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-meryl.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-meryl.C:27:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 27 | fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:27:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 27 | fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("uint32FMT") is different than merSize in meryl database ("uint32FMT").\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stderr, "createFromMeryl()-- tableSizeInEntries "uint64FMT"\n", tableSizeInEntries); | ^ /<>/libkmer/existDB-create-from-meryl.C:55:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); | ^ /<>/libkmer/existDB-create-from-meryl.C:55:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "createFromMeryl()-- count range "uint32FMT"-"uint32FMT"\n", lo, hi); | ^ /<>/libkmer/existDB-create-from-meryl.C:104:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 104 | fprintf(stderr, "createFromMeryl()-- numberOfMers "uint64FMT"\n", numberOfMers); | ^ /<>/libkmer/existDB-create-from-meryl.C:116:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:116:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:116:101: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stderr, "existDB::createFromMeryl()-- Found "uint64FMT" mers between count of "uint32FMT" and "uint32FMT"\n", | ^ /<>/libkmer/existDB-create-from-meryl.C:135:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-meryl.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromMeryl()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-meryl.C:138:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 138 | fprintf(stderr, "existDB::createFromMeryl()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-create-from-sequence.o -c /<>/libkmer/existDB-create-from-sequence.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-create-from-sequence.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-create-from-sequence.C:136:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | fprintf(stderr, "existDB::createFromSequence()-- hashTable is "uint64FMT"MB\n", _hashTableWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:137:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | fprintf(stderr, "existDB::createFromSequence()-- buckets is "uint64FMT"MB\n", _bucketsWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:139:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(stderr, "existDB::createFromSequence()-- counts is "uint64FMT"MB\n", _countsWords >> 17); | ^ /<>/libkmer/existDB-create-from-sequence.C:239:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-sequence.C:239:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ /<>/libkmer/existDB-create-from-sequence.C:239:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 239 | fprintf(stderr, "Compressed from "uint64FMT" to "uint64FMT" ("uint64FMT" bits)\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB-state.o -c /<>/libkmer/existDB-state.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB-state.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB-state.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); | ^ /<>/libkmer/existDB-state.C:170:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 170 | fprintf(stream, "tableBits "uint32FMT"\n", 2 * _merSizeInBases - _shift1); | ^ /<>/libkmer/existDB-state.C:172:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); | ^ /<>/libkmer/existDB-state.C:172:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 172 | fprintf(stream, "_hashTableWords "uint64FMT" ("uint64FMT" KB)\n", _hashTableWords, _hashTableWords >> 7); | ^ /<>/libkmer/existDB-state.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); | ^ /<>/libkmer/existDB-state.C:173:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stream, "_bucketsWords "uint64FMT" ("uint64FMT" KB)\n", _bucketsWords, _bucketsWords >> 7); | ^ /<>/libkmer/existDB-state.C:174:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); | ^ /<>/libkmer/existDB-state.C:174:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(stream, "_countsWords "uint64FMT" ("uint64FMT" KB)\n", _countsWords, _countsWords >> 7); | ^ /<>/libkmer/existDB-state.C:176:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stream, "_shift1: "uint32FMT"\n", _shift1); | ^ /<>/libkmer/existDB-state.C:177:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 177 | fprintf(stream, "_shift2 "uint32FMT"\n", _shift2); | ^ /<>/libkmer/existDB-state.C:178:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stream, "_mask1 "uint64HEX"\n", _mask1); | ^ /<>/libkmer/existDB-state.C:179:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 179 | fprintf(stream, "_mask2 "uint64HEX"\n", _mask2); | ^ /<>/libkmer/existDB-state.C:183:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stream, "_hshWidth "uint32FMT"\n", _hshWidth); | ^ /<>/libkmer/existDB-state.C:191:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stream, "_chkWidth "uint32FMT"\n", _chkWidth); | ^ /<>/libkmer/existDB-state.C:199:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 199 | fprintf(stream, "_cntWidth "uint32FMT"\n", _cntWidth); | ^ /<>/libkmer/existDB-state.C: In member function ‘bool existDB::loadState(const char*, bool, bool)’: /<>/libkmer/existDB-state.C:80:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | fread(cigam, sizeof(char), 16, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:124:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | fread(&_merSizeInBases, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:125:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 125 | fread(&_shift1, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:126:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | fread(&_shift2, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:127:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 127 | fread(&_mask1, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:128:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | fread(&_mask2, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:129:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fread(&_hshWidth, sizeof(uint32), 1, F); // only valid if _compressedHash | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:130:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fread(&_chkWidth, sizeof(uint32), 1, F); // only valid if _compressedBucket | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:131:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fread(&_cntWidth, sizeof(uint32), 1, F); // only valid if _compressedCounts | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:133:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fread(&_hashTableWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:134:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 134 | fread(&_bucketsWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:135:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 135 | fread(&_countsWords, sizeof(uint64), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:148:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 148 | fread(_hashTable, sizeof(uint64), _hashTableWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:149:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 149 | fread(_buckets, sizeof(uint64), _bucketsWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C:152:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 152 | fread(_counts, sizeof(uint64), _countsWords, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/existDB-state.C: In member function ‘void existDB::saveState(const char*)’: /<>/libkmer/existDB-state.C:24:10: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 24 | strncpy(cigam, magic, 16); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/existDB.o -c /<>/libkmer/existDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/existDB.H:7, from /<>/libkmer/existDB.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/existDB.C:44:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); | ^ /<>/libkmer/existDB.C:44:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "existDB::existDB()-- Got "uint32FMT", expected "uint32FMT"\n", _merSizeInBases, merSize); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-access.o -c /<>/libkmer/positionDB-access.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB-access.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/positionDB-access.C:2: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-access.C:22:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 22 | fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "uint64FMT" uint64's.\n", posnMax); | ^ /<>/libkmer/positionDB-access.C:215:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 215 | fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); | ^ /<>/libkmer/positionDB-access.C:215:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 215 | fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "uint64FMT" and more than "uint64FMT"\n", lo, hi); | ^ /<>/libkmer/positionDB-access.C:339:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); | ^ /<>/libkmer/positionDB-access.C:339:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 339 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers less than "uint64FMT"\n", loCount, lo); | ^ /<>/libkmer/positionDB-access.C:340:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); | ^ /<>/libkmer/positionDB-access.C:340:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 340 | fprintf(stderr, "positionDB::filter()-- Filtered "uint64FMT" kmers more than "uint64FMT"\n", hiCount, hi); | ^ /<>/libkmer/positionDB-access.C:341:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 341 | fprintf(stderr, "positionDB::filter()-- Saved "uint64FMT" kmers with acceptable count\n", okCount); | ^ /<>/libkmer/positionDB-access.C: In member function ‘void positionDB::filter(uint64, uint64)’: /<>/libkmer/positionDB-access.C:204:11: warning: unused variable ‘vv’ [-Wunused-variable] 204 | uint64 vv; | ^~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-dump.o -c /<>/libkmer/positionDB-dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-dump.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-dump.C:25:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:25:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:25:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(F, "B "uint64FMT" "uint64FMT"-"uint64FMT"\n", h, st, ed); | ^ /<>/libkmer/positionDB-dump.C:32:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:32:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:32:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(F, "%c chk="uint64HEX" pos="uint64FMT" siz="uint64FMT, | ^ /<>/libkmer/positionDB-dump.C:40:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(F, " "uint64FMT, getDecodedValue(_positions, pos, _posnWidth)); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-file.o -c /<>/libkmer/positionDB-file.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-file.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-file.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 197 | fprintf(stream, "merSizeInBases: "uint32FMT"\n", _merSizeInBases); | ^ /<>/libkmer/positionDB-file.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 198 | fprintf(stream, "merSkipInBases: "uint32FMT"\n", _merSkipInBases); | ^ /<>/libkmer/positionDB-file.C:199:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 199 | fprintf(stream, "tableSizeInBits: "uint32FMT"\n", _tableSizeInBits); | ^ /<>/libkmer/positionDB-file.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stream, "tableSizeInEntries: "uint64FMT"\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB-file.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 201 | fprintf(stream, "hashWidth: "uint32FMT"\n", _hashWidth); | ^ /<>/libkmer/positionDB-file.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stream, "chckWidth: "uint32FMT"\n", _chckWidth); | ^ /<>/libkmer/positionDB-file.C:203:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 203 | fprintf(stream, "posnWidth: "uint32FMT"\n", _posnWidth); | ^ /<>/libkmer/positionDB-file.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stream, "numberOfMers: "uint64FMT"\n", _numberOfMers); | ^ /<>/libkmer/positionDB-file.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 205 | fprintf(stream, "numberOfPositions: "uint64FMT"\n", _numberOfPositions); | ^ /<>/libkmer/positionDB-file.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 206 | fprintf(stream, "numberOfDistinct: "uint64FMT"\n", _numberOfDistinct); | ^ /<>/libkmer/positionDB-file.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 207 | fprintf(stream, "numberOfUnique: "uint64FMT"\n", _numberOfUnique); | ^ /<>/libkmer/positionDB-file.C:208:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 208 | fprintf(stream, "numberOfEntries: "uint64FMT"\n", _numberOfEntries); | ^ /<>/libkmer/positionDB-file.C:209:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stream, "maximumEntries: "uint64FMT"\n", _maximumEntries); | ^ /<>/libkmer/positionDB-file.C: In member function ‘void positionDB::saveState(const char*)’: /<>/libkmer/positionDB-file.C:63:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 63 | _hashTable_FW = (uint32 *)((_hashTable_FW) ? uint32ONE : uint32ZERO); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:37:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37 | write(F, magic, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:39:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | write(F, faild, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libkmer/positionDB-file.C:95:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | write(F, magic, sizeof(char) * 16); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-mismatch.o -c /<>/libkmer/positionDB-mismatch.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-mismatch.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-mismatch.C:324:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 324 | fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "uint64FMT" uint64's.\n", posnMax); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB-sort.o -c /<>/libkmer/positionDB-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.H:5, from /<>/libkmer/positionDB-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB-sort.C:37:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:37:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:37:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, "ERROR: Bucket "uint64FMT" starts at "uint64FMT" ends at "uint64FMT"?\n", b, st, ed); | ^ /<>/libkmer/positionDB-sort.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:78:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:78:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 78 | fprintf(stdout, "ERROR: unset posn bucket="uint64FMT" t="int64FMT" le="uint32FMT"\n", b, t, le); | ^ /<>/libkmer/positionDB-sort.C:86:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 86 | fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); | ^ /<>/libkmer/positionDB-sort.C:86:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 86 | fprintf(stdout, uint32FMTW(4)"] chck="uint64HEX" posn="uint64FMT"\n", t, _sortedChck[t], _sortedPosn[t]); | ^ /<>/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ /<>/libkmer/positionDB-sort.C:110:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "ERROR: bucket="uint64FMT" t="uint32FMT" le="uint32FMT": "uint64HEX" > "uint64HEX"\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/positionDB.o -c /<>/libkmer/positionDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/positionDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/positionDB.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/positionDB.C:46:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:46:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 46 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:52:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:52:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:58:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:58:123: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "uint32FMT", wanted "uint32FMT").\n", | ^ /<>/libkmer/positionDB.C:127:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, " sm = "uint64FMT"\n", sm); | ^ /<>/libkmer/positionDB.C:128:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, " lg = "uint64FMT"\n", lg); | ^ /<>/libkmer/positionDB.C:129:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, " merSize = "uint32FMT" bits\n", 2 * merSize); | ^ /<>/libkmer/positionDB.C:130:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, " approxMers = "uint64FMT" mers\n", approxMers); | ^ /<>/libkmer/positionDB.C:131:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, " posnWidth = "uint64FMT" bits\n", posnWidth); | ^ /<>/libkmer/positionDB.C:142:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:142:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:142:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "potential configurations for approximately "uint64FMT" "uint32FMT"-mers (posnW="uint64FMT").\n", | ^ /<>/libkmer/positionDB.C:200:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:200:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:200:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 200 | fprintf(stderr, "tblBits="uint64FMTW(2)" shifts="uint32FMTW(02)","uint32FMTW(02)" -- size %8.3fGB -- work %8.3f%s\n", | ^ /<>/libkmer/positionDB.C:217:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:217:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 217 | fprintf(stderr, "tblBits="uint32FMT" s1="uint32FMT" s2="uint32FMT" -- merSize="uint32FMT" bits + posnWidth="uint64FMT" bits (est "uint64FMT" mers) FINAL\n", | ^ /<>/libkmer/positionDB.C:326:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 326 | fprintf(stderr, "positionDB()-- bktAlloc = new uint64 ["uint64FMT"]\n", _tableSizeInEntries / 2 + 4); | ^ /<>/libkmer/positionDB.C:348:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 348 | fprintf(stderr, " Allocated bucket size counting space with total size "uint64FMT" KB\n", _tableSizeInEntries >> 8); | ^ /<>/libkmer/positionDB.C:392:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 392 | fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); | ^ /<>/libkmer/positionDB.C:392:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 392 | fprintf(stderr, " Found "uint64FMT" mers (max position = "uint64FMT")\n", _numberOfMers, _numberOfPositions); | ^ /<>/libkmer/positionDB.C:430:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 430 | fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); | ^ /<>/libkmer/positionDB.C:430:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 430 | fprintf(stderr, " Allocated "uint64FMT"KB for buckets ("uint64FMT" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); | ^ /<>/libkmer/positionDB.C:435:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 435 | fprintf(stderr, "positionDB()-- _countingBuckets = new uint64 ["uint64FMT"]\n", bucketsSpace); | ^ /<>/libkmer/positionDB.C:553:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, " Sorting and repacking buckets ("uint64FMT" buckets).\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB.C:565:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 565 | " Found "uint64FMTW(12)" total mers\n" | ^ /<>/libkmer/positionDB.C:566:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 566 | " Found "uint64FMTW(12)" distinct mers\n" | ^ /<>/libkmer/positionDB.C:567:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 567 | " Found "uint64FMTW(12)" unique mers\n" | ^ /<>/libkmer/positionDB.C:568:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 568 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:568:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 568 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:637:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 637 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); | ^ /<>/libkmer/positionDB.C:637:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 637 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for hash table ("uint64FMT" 64-bit words)\n", hs >> 7, hs); | ^ /<>/libkmer/positionDB.C:643:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 643 | fprintf(stderr, "positionDB()-- _hashTable_BP = new uint64 ["uint64FMT"]\n", hs); | ^ /<>/libkmer/positionDB.C:662:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 662 | fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); | ^ /<>/libkmer/positionDB.C:662:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 662 | fprintf(stderr, " Reusing bucket space; Have: "uint64FMT" Need: "uint64FMT" (64-bit words)\n", bucketsSpace, bs); | ^ /<>/libkmer/positionDB.C:669:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 669 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); | ^ /<>/libkmer/positionDB.C:669:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 669 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for buckets ("uint64FMT" 64-bit words)\n", bs >> 7, bs); | ^ /<>/libkmer/positionDB.C:674:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 674 | fprintf(stderr, "positionDB()-- _buckets = new uint64 ["uint64FMT"]\n", bs); | ^ /<>/libkmer/positionDB.C:680:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 680 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); | ^ /<>/libkmer/positionDB.C:680:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 680 | fprintf(stderr, " Allocated "uint64FMTW(10)"KB for positions ("uint64FMT" 64-bit words)\n", ps >> 7, ps); | ^ /<>/libkmer/positionDB.C:685:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 685 | fprintf(stderr, "positionDB()-- _positions = new uint64 ["uint64FMT"\n", ps); | ^ /<>/libkmer/positionDB.C:695:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 695 | fprintf(stderr, " Transferring to final structure ("uint64FMT" buckets).\n", _tableSizeInEntries); | ^ /<>/libkmer/positionDB.C:878:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 878 | fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", | ^ /<>/libkmer/positionDB.C:878:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 878 | fprintf(stderr, "positionDB()-- ERROR: Got position "uint64FMT", but only "uint64FMT" available!\n", | ^ /<>/libkmer/positionDB.C:916:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 916 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); | ^ /<>/libkmer/positionDB.C:916:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 916 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", bs, ps); | ^ /<>/libkmer/positionDB.C:917:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 917 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:917:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 917 | fprintf(stderr, " Avail: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:918:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 918 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); | ^ /<>/libkmer/positionDB.C:918:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 918 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (64-bit words)\n", currentBbit / 64, currentPbit / 64); | ^ /<>/libkmer/positionDB.C:928:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 928 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:928:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 928 | fprintf(stderr, " Used: Bucket "uint64FMTW(12)" Position "uint64FMTW(12)" (entries)\n", _numberOfDistinct, _numberOfEntries); | ^ /<>/libkmer/positionDB.C:930:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 930 | " Found "uint64FMTW(12)" total mers\n" | ^ /<>/libkmer/positionDB.C:931:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 931 | " Found "uint64FMTW(12)" distinct mers\n" | ^ /<>/libkmer/positionDB.C:932:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 932 | " Found "uint64FMTW(12)" unique mers\n" | ^ /<>/libkmer/positionDB.C:933:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 933 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:933:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 933 | " Need "uint64FMT" non-unique position list entries ("uint64FMT" maximum count)\n", | ^ /<>/libkmer/positionDB.C:955:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 955 | fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", | ^ /<>/libkmer/positionDB.C:955:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 955 | fprintf(stderr, " Rebuilding the hash table, from "uint32FMT" bits wide to "uint32FMT" bits wide.\n", | ^ /<>/libkmer/positionDB.C:990:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 990 | fprintf(stderr, " Loading "uint64FMT" mercounts.\n", counts->numberOfDistinctMers()); | ^ /<>/libkmer/positionDB.C:1013:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1013 | fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); | ^ /<>/libkmer/positionDB.C:1013:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1013 | fprintf(stderr, " Loaded "uint64FMT" mercounts; largest is "uint64FMT".\n", countsLoaded, largestMerylCount); | ^ /<>/libkmer/positionDB.C:1017:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1017 | fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", | ^ /<>/libkmer/positionDB.C:1017:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1017 | fprintf(stderr, " Compress sizes from "uint32FMT" bits to "uint32FMT" bits.\n", | ^ /<>/libkmer/positionDB.C: In member function ‘void positionDB::build(merStream*, existDB*, existDB*, merylStreamReader*, uint32, uint32, bool)’: /<>/libkmer/positionDB.C:324:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 324 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:433:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 433 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:641:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 641 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:672:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 672 | } catch (std::bad_alloc) { | ^~~~~~~~~ /<>/libkmer/positionDB.C:683:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 683 | } catch (std::bad_alloc) { | ^~~~~~~~~ rm -f /<>/libkmer/libkmer.a && ar ruvs /<>/libkmer/libkmer.a /<>/libkmer/existDB-create-from-fasta.o /<>/libkmer/existDB-create-from-meryl.o /<>/libkmer/existDB-create-from-sequence.o /<>/libkmer/existDB-state.o /<>/libkmer/existDB.o /<>/libkmer/positionDB-access.o /<>/libkmer/positionDB-dump.o /<>/libkmer/positionDB-file.o /<>/libkmer/positionDB-mismatch.o /<>/libkmer/positionDB-sort.o /<>/libkmer/positionDB.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libkmer/libkmer.a a - /<>/libkmer/existDB-create-from-fasta.o a - /<>/libkmer/existDB-create-from-meryl.o a - /<>/libkmer/existDB-create-from-sequence.o a - /<>/libkmer/existDB-state.o a - /<>/libkmer/existDB.o a - /<>/libkmer/positionDB-access.o a - /<>/libkmer/positionDB-dump.o a - /<>/libkmer/positionDB-file.o a - /<>/libkmer/positionDB-mismatch.o a - /<>/libkmer/positionDB-sort.o a - /<>/libkmer/positionDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libmeryl/libmeryl.o -c /<>/libmeryl/libmeryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libmeryl/libmeryl.H:4, from /<>/libmeryl/libmeryl.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libmeryl/libmeryl.C:72:2: warning: #warning not checking pmagic [-Wcpp] 72 | #warning not checking pmagic | ^~~~~~~ /<>/libmeryl/libmeryl.C:134:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 134 | fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", | ^ /<>/libmeryl/libmeryl.C:134:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 134 | fprintf(stderr, "merylStreamReader()-- ERROR: User requested mersize "uint32FMT" but '%s' is mersize "uint32FMT"\n", | ^ /<>/libmeryl/libmeryl.C:6:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 6 | static char *ImagicV = "merylStreamIv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:7:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 7 | static char *ImagicX = "merylStreamIvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:8:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 8 | static char *DmagicV = "merylStreamDv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:9:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 9 | static char *DmagicX = "merylStreamDvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:10:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 10 | static char *PmagicV = "merylStreamPv03\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C:11:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 11 | static char *PmagicX = "merylStreamPvXX\n"; | ^~~~~~~~~~~~~~~~~~~ /<>/libmeryl/libmeryl.C: In constructor ‘merylStreamReader::merylStreamReader(const char*, uint32)’: /<>/libmeryl/libmeryl.C:42:11: warning: variable ‘Pmagic’ set but not used [-Wunused-but-set-variable] 42 | char Pmagic[16] = {0}; | ^~~~~~ /<>/libmeryl/libmeryl.C: In member function ‘void merylStreamWriter::addMer(uint64, uint32, uint64, uint32, uint32, uint32*)’: /<>/libmeryl/libmeryl.C:469:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 469 | (prefix <= _thisMerPre) && (mer < _thisMerMer)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ rm -f /<>/libmeryl/libmeryl.a && ar ruvs /<>/libmeryl/libmeryl.a /<>/libmeryl/libmeryl.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libmeryl/libmeryl.a a - /<>/libmeryl/libmeryl.o g++ -Wl,-z,relro -Wl,-z,now -o seatac/seatac seatac/seatac.o seatac/configuration.o seatac/encodedQuery.o seatac/hitMatrix.o seatac/thr-search.o seatac/thr-loader.o seatac/thr-deadlock.o seatac/hitMatrix-sort.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains-driver.o -c seatac/heavychains-driver.C In file included from seatac/heavychains.H:11, from seatac/heavychains-driver.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/heavychains.o -c seatac/heavychains.C In file included from seatac/heavychains.H:11, from seatac/heavychains.C:22: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seatac/heavychains.C:96:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:96:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:96:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr,"HeavyChains: filtering strands "uint32FMT" "uint32FMT" "uint32FMT"\n", iid1, iid2, Plen); | ^ seatac/heavychains.C:164:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 164 | fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", | ^ seatac/heavychains.C:164:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 164 | fprintf(stderr, "heavychains: out "uint32FMTW(8)" %8d %8d -- "uint32FMTW(8)" %8d %8d\n", | ^ seatac/heavychains.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:169:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:169:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(outF, "M x H"uint64FMT" . %s:"uint32FMT" %d %d %d %s:"uint32FMT" %d %d %d > /hf=%.1f /hr=%.1f\n", | ^ seatac/heavychains.C:186:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", | ^ seatac/heavychains.C:186:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "HeavyChains: finished strands "uint32FMTW(8)" "uint32FMTW(8)" maxlen1=%f maxlen2=%f maxScoreFwd=%f maxScoreRef=%f\n", | ^ seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o seatac/heavychains seatac/heavychains-driver.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-nop.o -c seatac/filter-nop.C In file included from /<>/libbio/bio.h:4, from seatac/filter-nop.C:9: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seatac/filter-nop.C:10: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seatac/filter-nop.C:67:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:90: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C:67:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | "M x . . %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s "uint32FMT"\n", | ^ seatac/filter-nop.C: In function ‘void* construct(char*)’: seatac/filter-nop.C:116:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 116 | char *seq1 = "UNK"; | ^~~~~ seatac/filter-nop.C:117:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 117 | char *seq2 = "UNK"; | ^~~~~ rm -f seatac/filter-nop.so && g++ -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-nop.so seatac/filter-nop.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seatac/filter-heavychains.o -c seatac/filter-heavychains.C In file included from /<>/libutil/util++.H:4, from seatac/filter-heavychains.C:24: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seatac/filter-heavychains.C:25: seatac/heavychains.H: In member function ‘double DPTree::matchScore(kd_node, Match&)’: seatac/heavychains.H:374:19: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 374 | if ( (flo.X() && node[flo.intv].lo <= p.xlo || | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seatac/heavychains.H: In function ‘void addHit(void*, char, uint32, uint32, uint32, uint32, uint32, uint32, uint32)’: seatac/heavychains.H:53:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ seatac/heavychains.H:53:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ seatac/heavychains.H:53:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 53 | strncpy(assemblyId1, assemblyid1, 31); | ^ seatac/heavychains.H:54:12: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 54 | strncpy(assemblyId2, assemblyid2, 31); | ^ rm -f seatac/filter-heavychains.so && g++ -Wl,-z,relro -Wl,-z,now -shared -o seatac/filter-heavychains.so seatac/filter-heavychains.o seatac/heavychains.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/leaff.o -c leaff/leaff.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/leaff.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/leaff.C:311:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "WARNING: Didn't find sequence with iid '"uint32FMT"'\n", sid); | ^ leaff/leaff.C:400:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 400 | fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", | ^ leaff/leaff.C:400:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 400 | fprintf(stdout, "G\tseq\t%s:"uint32FMT"\t"uint32FMT"\t%s\n", | ^ leaff/leaff.C:469:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 469 | sprintf(def, "random"uint32FMTW(06), i); | ^ leaff/leaff.C:727:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 727 | fprintf(stderr, "Couldn't read "uint64FMT" bytes from '%s': %s\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/blocks.o -c leaff/blocks.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/blocks.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/blocks.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:32:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:40:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 40 | fprintf(stdout, "%c "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ leaff/blocks.C:42:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C:42:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C:42:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 42 | fprintf(stdout, ". "uint32FMT" "uint32FMT" "uint32FMT"\n", s, pos, uint32ZERO); | ^ leaff/blocks.C: In function ‘void dumpBlocks(char*)’: leaff/blocks.C:7:16: warning: unused variable ‘S’ [-Wunused-variable] 7 | seqInCore *S = 0L; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/dups.o -c leaff/dups.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/dups.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/dups.C:26:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stdout, uint32FMT" <-> "uint32FMT"\n", sa->getIID(), sb->getIID()); | ^ leaff/dups.C:28:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 28 | fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:28:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 28 | fprintf(stderr, "COLLISION DETECTED BETWEEN %s:"uint32FMT" AND %s:"uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:52:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 52 | fprintf(stderr, "Internal error: found two copies of the same sequence iid ("uint32FMT")!\n", result[idx].i); | ^ leaff/dups.C:60:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 60 | fprintf(stdout, uint32FMT":%s\n"uint32FMT":%s\n\n", | ^ leaff/dups.C:64:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ leaff/dups.C:64:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 64 | fprintf(stderr, "COLLISION DETECTED BETWEEN IID "uint32FMT" AND "uint32FMT"!\nPLEASE REPORT THIS TO bri@walenz.org!\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/gc.o -c leaff/gc.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/gc.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/gc.C:68:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/partition.o -c leaff/partition.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/partition.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/partition.C:55:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | fprintf(stderr, "ERROR: Failed to partition "uint32FMT"\n", i); | ^ leaff/partition.C:62:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | sprintf(filename, "%s-"uint32FMTW(03)".fasta", prefix, o); | ^ leaff/partition.C:77:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 77 | fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); | ^ leaff/partition.C:77:51: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 77 | fprintf(stderr, "Huh? '%s' "uint32FMT" != "uint32FMT"\n", S->header(), S->sequenceLength(), p[i].length); | ^ leaff/partition.C:96:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stdout, uint32FMT"]("uint32FMT")", o, sizeP); | ^ leaff/partition.C:99:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); | ^ leaff/partition.C:99:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stdout, " "uint32FMT"("uint32FMT")", p[i].index, p[i].length); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/simseq.o -c leaff/simseq.C In file included from /<>/libbio/bio.h:4, from leaff/simseq.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o leaff/stats.o -c leaff/stats.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from leaff/stats.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ leaff/stats.C:110:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "numSeqs "uint32FMT"\n", numSeq); | ^ leaff/stats.C:112:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 112 | fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); | ^ leaff/stats.C:112:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 112 | fprintf(stdout, "SPAN (smallest "uint32FMT" largest "uint32FMT")\n", Ls[numSeq-1], Ls[0]); | ^ leaff/stats.C:114:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:114:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:114:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 114 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50s[i], l50s[i]); | ^ leaff/stats.C:115:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(stdout, "totLen "uint64FMTW(10)"\n", Ss); | ^ leaff/stats.C:116:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 116 | fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rs); | ^ leaff/stats.C:118:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 118 | fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); | ^ leaff/stats.C:118:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 118 | fprintf(stdout, "BASES (smallest "uint32FMT" largest "uint32FMT")\n", Lb[numSeq-1], Lb[0]); | ^ leaff/stats.C:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:120:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stdout, "n"uint32FMT" "uint32FMT" at index "uint32FMT"\n", 10 * i, n50b[i], l50b[i]); | ^ leaff/stats.C:121:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 121 | fprintf(stdout, "totLen "uint64FMTW(10)"\n", Sb); | ^ leaff/stats.C:122:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 122 | fprintf(stdout, "refLen "uint64FMTW(10)"\n", Rb); | ^ g++ -Wl,-z,relro -Wl,-z,now -o leaff/leaff leaff/leaff.o leaff/blocks.o leaff/dups.o leaff/gc.o leaff/partition.o leaff/simseq.o leaff/stats.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/meryl.o -c meryl/meryl.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/args.o -c meryl/args.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/args.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/args.C:26:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 26 | fprintf(stderr, "writeString()-- Failed to write string of length "uint32FMT": %s\n", len, strerror(errno)); | ^ meryl/args.C: In function ‘char* readString(FILE*)’: meryl/args.C:40:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | fread(&len, sizeof(uint32), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:50:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | fread(str, sizeof(char), len, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C: In constructor ‘merylArgs::merylArgs(const char*)’: meryl/args.C:513:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 513 | fread(magic, sizeof(char), 16, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/args.C:521:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fread(this, sizeof(merylArgs), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/binaryOp.o -c meryl/binaryOp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/binaryOp.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/binaryOp.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[0], A->merSize()); | ^ meryl/binaryOp.C:44:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 44 | fprintf(stderr, "ERROR - mersize of '%s' is "uint32FMT"\n", args->mergeFiles[1], B->merSize()); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build.o -c meryl/build.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/build.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/build.C:153:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err %s -N mc%s %s-count.sh", | ^ meryl/build.C:156:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 156 | sprintf(cmd, "qsub -t 1-"uint64FMT" -cwd -b n -j y -o %s-count-\\$TASK_ID.err -N mc%s %s-count.sh", | ^ meryl/build.C:238:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] 238 | #warning not submitting prepareBatch to grid | ^~~~~~~ meryl/build.C:293:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 293 | fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); | ^ meryl/build.C:294:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 294 | fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); | ^ meryl/build.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); | ^ meryl/build.C:296:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:296:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 296 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:297:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 297 | fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); | ^ meryl/build.C:298:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 298 | fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); | ^ meryl/build.C:305:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:305:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 305 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:310:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^ meryl/build.C:314:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 314 | fprintf(stderr, " numMersActual = "uint64FMT"\n", args->numMersActual); | ^ meryl/build.C:315:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 315 | fprintf(stderr, " mersPerBatch = "uint64FMT"\n", args->mersPerBatch); | ^ meryl/build.C:316:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 316 | fprintf(stderr, " basesPerBatch = "uint64FMT"\n", args->basesPerBatch); | ^ meryl/build.C:317:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 317 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:317:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 317 | fprintf(stderr, " numBuckets = "uint64FMT" ("uint32FMT" bits)\n", args->numBuckets, args->numBuckets_log2); | ^ meryl/build.C:318:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 318 | fprintf(stderr, " bucketPointerWidth = "uint32FMT"\n", args->bucketPointerWidth); | ^ meryl/build.C:319:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 319 | fprintf(stderr, " merDataWidth = "uint32FMT"\n", args->merDataWidth); | ^ meryl/build.C:342:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 342 | sprintf(filename, "%s.batch"uint64FMT".mcdat", args->outputFile, segment); | ^ meryl/build.C:346:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 346 | fprintf(stderr, "Found result for batch "uint64FMT" in %s.\n", segment, filename); | ^ meryl/build.C:352:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 352 | fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); | ^ meryl/build.C:352:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 352 | fprintf(stderr, "Computing segment "uint64FMT" of "uint64FMT".\n", segment+1, args->segmentLimit); | ^ meryl/build.C:365:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", | ^ meryl/build.C:365:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 365 | fprintf(stderr, " Allocating "uint64FMT"MB for mer storage ("uint32FMT" bits wide).\n", | ^ meryl/build.C:384:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 384 | fprintf(stderr, " Allocating "uint64FMT"MB for mer position storage.\n", | ^ meryl/build.C:390:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", | ^ meryl/build.C:390:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 390 | fprintf(stderr, " Allocating "uint64FMT"MB for bucket pointer table ("uint32FMT" bits wide).\n", | ^ meryl/build.C:396:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 396 | fprintf(stderr, " Allocating "uint64FMT"MB for counting the size of each bucket.\n", args->numBuckets >> 18); | ^ meryl/build.C:477:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 477 | fprintf(stderr, " Releasing "uint64FMT"MB from counting the size of each bucket.\n", args->numBuckets >> 18); | ^ meryl/build.C:532:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 532 | sprintf(batchOutputFile, "%s.batch"uint64FMT, args->outputFile, segment); | ^ meryl/build.C:552:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 552 | fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); | ^ meryl/build.C:553:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", | ^ meryl/build.C:553:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 553 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") ends before it starts!\n", | ^ meryl/build.C:555:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 555 | fprintf(stderr, "ERROR: start="uint64FMT"\n", st); | ^ meryl/build.C:556:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 556 | fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); | ^ meryl/build.C:561:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 561 | fprintf(stderr, "ERROR: In segment "uint64FMT"\n", segment); | ^ meryl/build.C:562:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 562 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", | ^ meryl/build.C:562:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 562 | fprintf(stderr, "ERROR: Bucket "uint64FMT" (out of "uint64FMT") is HUGE!\n", | ^ meryl/build.C:564:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 564 | fprintf(stderr, "ERROR: start="uint64FMT"\n", st); | ^ meryl/build.C:565:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 565 | fprintf(stderr, "ERROR: end ="uint64FMT"\n", ed); | ^ meryl/build.C:667:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 667 | fprintf(stderr, "Segment "uint64FMT" finished.\n", segment); | ^ meryl/build.C:705:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 705 | fprintf(stdout, "%s -countbatch "uint64FMT" -o %s\n", args->execName, s, args->outputFile); | ^ meryl/build.C:783:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 783 | sprintf(argv[argc], "%s.batch"uint32FMT, args->outputFile, i); | ^ meryl/build.C:807:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 807 | sprintf(filename, "%s.batch"uint32FMT".mcidx", args->outputFile, i); | ^ meryl/build.C:809:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 809 | sprintf(filename, "%s.batch"uint32FMT".mcdat", args->outputFile, i); | ^ meryl/build.C:811:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 811 | sprintf(filename, "%s.batch"uint32FMT".mcpos", args->outputFile, i); | ^ meryl/build.C: In function ‘void prepareBatch(merylArgs*)’: meryl/build.C:310:23: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 4 has type ‘uint64’ {aka ‘long unsigned int’} [-Wformat=] 310 | fprintf(stderr, "Computing "uint64FMT" segments using "uint32FMT" threads and "uint64FMT"MB memory ("uint64FMT"MB if in one batch).\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 | estimateMemory(args->merSize, args->mersPerBatch, args->positionsEnabled) * args->numThreads, 312 | estimateMemory(args->merSize, args->numMersActual, args->positionsEnabled)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | uint64 {aka long unsigned int} meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C:310:23: warning: format ‘%lu’ expects a matching ‘long unsigned int’ argument [-Wformat=] meryl/build.C: In function ‘void runSegment(merylArgs*, uint64)’: meryl/build.C:585:10: warning: ‘void bzero(void*, size_t)’ clearing an object of type ‘class sortedList_t’ with no trivial copy-assignment; use assignment or value-initialization instead [-Wclass-memaccess] 585 | bzero(sortedList, sizeof(sortedList_t) * sortedListLen); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/build.C:26:7: note: ‘class sortedList_t’ declared here 26 | class sortedList_t { | ^~~~~~~~~~~~ meryl/build.C:412:8: warning: unused variable ‘mstring’ [-Wunused-variable] 412 | char mstring[256]; | ^~~~~~~ meryl/build.C: In function ‘void build(merylArgs*)’: meryl/build.C:769:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 769 | arga[argc] = false; argv[argc++] = "meryl-build-merge"; | ^~~~~~~~~~~~~~~~~~~ meryl/build.C:770:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 770 | arga[argc] = false; argv[argc++] = "-M"; | ^~~~ meryl/build.C:771:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 771 | arga[argc] = false; argv[argc++] = "merge"; | ^~~~~~~ meryl/build.C:775:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 775 | argv[argc++] = "-v"; | ^~~~ meryl/build.C:780:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 780 | argv[argc++] = "-s"; | ^~~~ meryl/build.C:787:41: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 787 | arga[argc] = false; argv[argc++] = "-o"; | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build-threads.o -c meryl/build-threads.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/build-threads.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/dump.o -c meryl/dump.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/dump.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/dump.C:17:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | fprintf(stdout, ">"uint64FMT"\n%s\n", | ^ meryl/dump.C:35:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(stdout, ">"uint64FMT, M->theCount()); | ^ meryl/dump.C:37:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 37 | fprintf(stdout, " "uint32FMT, M->getPosition(i)); | ^ meryl/dump.C:50:2: warning: #warning make this a test [-Wcpp] 50 | #warning make this a test | ^~~~~~~ meryl/dump.C:72:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 72 | fprintf(stdout, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); | ^ meryl/dump.C:73:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 73 | fprintf(stdout, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); | ^ meryl/dump.C:74:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 74 | fprintf(stdout, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); | ^ meryl/dump.C:87:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Found "uint64FMT" mers.\n", M->numberOfTotalMers()); | ^ meryl/dump.C:88:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 88 | fprintf(stderr, "Found "uint64FMT" distinct mers.\n", M->numberOfDistinctMers()); | ^ meryl/dump.C:89:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "Found "uint64FMT" unique mers.\n", M->numberOfUniqueMers()); | ^ meryl/dump.C:91:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", | ^ meryl/dump.C:91:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 91 | fprintf(stderr, "Largest mercount is "uint64FMT"; "uint64FMT" mers are too big for histogram.\n", | ^ meryl/dump.C:101:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, uint32FMT"\t"uint64FMT"\t%.4f\t%.4f\n", | ^ meryl/dump.C:148:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, uint32FMT"\t"uint64FMT"\n", d, hist[d]); | ^ meryl/dump.C:151:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stderr, "huge\t"uint64FMT"\n", histHuge); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/estimate.o -c meryl/estimate.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/estimate.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/estimate.C:54:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", | ^ meryl/estimate.C:54:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "Can fit "uint64FMT" mers into table with prefix of "uint64FMT" bits, using %.3fMB (%.3fMB for positions)\n", | ^ meryl/estimate.C:162:28: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 162 | fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", | ^ meryl/estimate.C:162:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 162 | fprintf(stderr, uint64FMT" "uint32FMT"-mers can be computed using "uint64FMT"MB memory.\n", | ^ meryl/estimate.C: In function ‘uint64 estimateMemory(uint32, uint64, bool)’: meryl/estimate.C:77:13: warning: unused variable ‘N’ [-Wunused-variable] 77 | uint64 N = logBaseTwo64(numMers); // Width of the bucket pointer table | ^ meryl/estimate.C:73:11: warning: variable ‘tMin’ set but not used [-Wunused-but-set-variable] 73 | uint64 tMin = tMax; | ^~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/merge.o -c meryl/merge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/merge.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/merge.C:14:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 14 | fprintf(stderr, "ERROR - must have at least two databases (you gave "uint32FMT")!\n", args->mergeFilesLen); | ^ meryl/merge.C: In function ‘void multipleOperations(merylArgs*)’: meryl/merge.C:237:10: warning: ‘void operator delete(void*, std::size_t)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 237 | delete R; | ^ meryl/merge.C:37:71: note: returned from ‘void* operator new [](std::size_t)’ 37 | merylStreamReader **R = new merylStreamReader* [args->mergeFilesLen]; | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/unaryOp.o -c meryl/unaryOp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/meryl.H:4, from meryl/unaryOp.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating meryl/libmerylguts.a a - meryl/args.o a - meryl/binaryOp.o a - meryl/build.o a - meryl/build-threads.o a - meryl/dump.o a - meryl/estimate.o a - meryl/merge.o a - meryl/unaryOp.o g++ -Wl,-z,relro -Wl,-z,now -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/simple.o -c meryl/simple.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/simple.C:8: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/simple.C:98:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 98 | fprintf(stderr, "Guessing "uint64FMT" mers in input '%s'\n", numMers, inName); | ^ meryl/simple.C:99:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 99 | fprintf(stderr, "Allocating "uint64FMT"MB for mer storage.\n", numMers * 8 >> 20); | ^ meryl/simple.C:129:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "Found "uint64FMT" mers in input '%s'\n", theMersLen, inName); | ^ g++ -Wl,-z,relro -Wl,-z,now -o meryl/simple meryl/simple.o /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers.o -c meryl/mapMers.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/mapMers.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/mapMers.C:135:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:135:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 135 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:136:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 136 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t" | ^ meryl/mapMers.C:137:24: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:76: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:137:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 137 | uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:165:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:165:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:165:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 165 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:171:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stdout, "%s\t"uint64FMT"\tuncovered\n", S->header(), MS->thePositionInSequence()); | ^ meryl/mapMers.C:176:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:176:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:176:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 176 | fprintf(stdout, "%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", S->header(), beg, end+merSize, end+merSize - beg); | ^ meryl/mapMers.C:178:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "numCovReg: "uint64FMT"\n", numCovReg); | ^ meryl/mapMers.C:179:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 179 | fprintf(stderr, "lenCovReg: "uint64FMT"\n", lenCovReg); | ^ meryl/mapMers.C:193:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C:193:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 193 | fprintf(stdout, "%s\t%s\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\t"uint64FMT"\n", | ^ meryl/mapMers.C: In function ‘int main(int, char**)’: meryl/mapMers.C:21:13: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 21 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o meryl/mapMers meryl/mapMers.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from meryl/mapMers-depth.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o meryl/mapMers-depth meryl/mapMers-depth.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/kmer-mask.o -c meryl/kmer-mask.C In file included from /<>/libutil/util++.H:4, from meryl/kmer-mask.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ meryl/kmer-mask.C:754:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 754 | fprintf(stderr, "aClean "FW"\n", g->thresholdCounts[0][0]); | ^ meryl/kmer-mask.C:755:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 755 | fprintf(stderr, "aMurky "FW"\n", g->thresholdCounts[1][0]); | ^ meryl/kmer-mask.C:756:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 756 | fprintf(stderr, "aMatch "FW"\n", g->thresholdCounts[2][0]); | ^ meryl/kmer-mask.C:757:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 757 | fprintf(stderr, "aMixed "FW"\n", g->thresholdCounts[3][0]); | ^ meryl/kmer-mask.C:760:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:760:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 760 | fprintf(stderr, "aClean "FW" "FW" "FW" "FW"\n", g->thresholdCounts[0][0], g->thresholdCounts[0][1], g->thresholdCounts[0][2], g->thresholdCounts[0][3]); | ^ meryl/kmer-mask.C:761:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:761:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 761 | fprintf(stderr, "aMurky "FW" "FW" "FW" "FW"\n", g->thresholdCounts[1][0], g->thresholdCounts[1][1], g->thresholdCounts[1][2], g->thresholdCounts[1][3]); | ^ meryl/kmer-mask.C:762:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:762:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 762 | fprintf(stderr, "aMatch "FW" "FW" "FW" "FW"\n", g->thresholdCounts[2][0], g->thresholdCounts[2][1], g->thresholdCounts[2][2], g->thresholdCounts[2][3]); | ^ meryl/kmer-mask.C:763:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C:763:46: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 763 | fprintf(stderr, "aMixed "FW" "FW" "FW" "FW"\n", g->thresholdCounts[3][0], g->thresholdCounts[3][1], g->thresholdCounts[3][2], g->thresholdCounts[3][3]); | ^ meryl/kmer-mask.C: In member function ‘bool fastqRecord::load(FILE*, FILE*)’: meryl/kmer-mask.C:69:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets(a1, 1024, FASTQ1); chomp(a1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:70:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(a2, maxLength, FASTQ1); chomp(a2); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:71:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 71 | fgets(a3, 1024, FASTQ1); chomp(a3); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:72:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 72 | fgets(a4, maxLength, FASTQ1); chomp(a4); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:83:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 83 | fgets(b1, 1024, FASTQ2); chomp(b1); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:84:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | fgets(b2, maxLength, FASTQ2); chomp(b2); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:85:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fgets(b3, 1024, FASTQ2); chomp(b3); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ meryl/kmer-mask.C:86:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fgets(b4, maxLength, FASTQ2); chomp(b4); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o meryl/kmer-mask meryl/kmer-mask.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix.o -c seagen/hitMatrix.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.C:642:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.C:642:107: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 642 | sprintf(line, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/searchGENOME.o -c seagen/searchGENOME.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/searchGENOME.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/configuration.o -c seagen/configuration.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/configuration.C:84:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 84 | fprintf(stderr, "\n"uint32FMTW(7)" sequences in %5.2f seconds, %8.3f per second.\n", nq, tm, nq/tm); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/encodedQuery.o -c seagen/encodedQuery.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seagen/encodedQuery.H:6, from seagen/encodedQuery.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/encodedQuery.C:142:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); | ^ seagen/encodedQuery.C:142:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 142 | fprintf(stderr, "encodedQuery::test()-- mersAvail incorrect: Recomputed:"uint32FMT" Real:"uint32FMT"\n", _mersAvail, _r_mersAvail); | ^ seagen/encodedQuery.C:152:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 152 | fprintf(stderr, "encodedQuery::test()-- skip["uint32FMTW(4)"] incorrect: Acc:%d Real:%d\n", i, getSkip(i, true), _r_skip[i]); | ^ seagen/encodedQuery.C:160:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:160:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:160:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | fprintf(stderr, "encodedQuery::test()-- mers["uint32FMTW(4)"] incorrect: Acc:"uint64HEX" %s Real:"uint64HEX" %s\n", | ^ seagen/encodedQuery.C:209:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", | ^ seagen/encodedQuery.C:209:67: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 209 | fprintf(stderr, "encodedQuery::addOutput()-- from "uint32FMT" to "uint32FMT" bytes.\n", | ^ seagen/encodedQuery.C: In member function ‘void encodedQuery::addOutput(void*, uint32)’: seagen/encodedQuery.C:207:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 207 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-deadlock.o -c seagen/thr-deadlock.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-deadlock.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-loader.o -c seagen/thr-loader.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-loader.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ seagen/thr-loader.C: In function ‘void* loaderThread(void*)’: seagen/thr-loader.C:14:17: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 14 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-search.o -c seagen/thr-search.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/thr-output.o -c seagen/thr-output.C In file included from /<>/libutil/util++.H:4, from seagen/searchGENOME.H:20, from seagen/thr-output.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/searchGENOME.H:22: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ In file included from seagen/searchGENOME.H:25: seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ seagen/thr-output.C: In function ‘void* writerThread(void*, void*)’: seagen/thr-output.C:48:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 48 | write(config._outputFile, query->theOutput(), query->theOutputLength()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seagen/thr-output.C:62:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 62 | write(config._matchCountsFile, str, strlen(str)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitMatrix-sort.o -c seagen/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from seagen/hitMatrix.H:8, from seagen/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/hitMatrix.H:9: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ seagen/hitMatrix.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H:128:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ seagen/hitMatrix.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64)’: seagen/hitMatrix.H:126:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 126 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/aHit.o -c seagen/aHit.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/aHit.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/aHit.C:20:14: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C:20:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 20 | fprintf(F, "-%c -e "uint32FMT" -D "uint32FMT" "uint32FMT" "uint32FMT" -M "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/aHit.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/aHit.C:12:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 12 | fread(a, sizeof(aHit), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o seagen/seagen seagen/hitMatrix.o seagen/searchGENOME.o seagen/configuration.o seagen/encodedQuery.o seagen/thr-deadlock.o seagen/thr-loader.o seagen/thr-search.o seagen/thr-output.o seagen/hitMatrix-sort.o seagen/aHit.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitConverter.o -c seagen/hitConverter.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/hitConverter.C:3: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/hitConverter.C: In function ‘void asc2bin(FILE*, FILE*)’: seagen/hitConverter.C:39:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fgets(b, 1024, I); | ~~~~~^~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o seagen/hitConverter seagen/hitConverter.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST.o -c seagen/filterEST.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterEST.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterEST.C:76:11: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 76 | " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", | ^ seagen/filterEST.C:76:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 76 | " hits saved:"uint32FMTW(8)"/"uint32FMTW(8)" = %6.3f%%\r", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterEST-complicated.o -c seagen/filterEST-complicated.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterEST-complicated.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterEST-complicated.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterEST-complicated.C:67:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", | ^ seagen/filterEST-complicated.C:67:79: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 67 | fprintf(logFile, uint32FMT"] unique: aggressively filtered to "uint32FMT" hits out of "uint32FMT" hits.\n", | ^ seagen/filterEST-complicated.C:115:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", | ^ seagen/filterEST-complicated.C:115:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(logFile, uint32FMT"] knee: filtered "uint32FMT" hits down to "uint32FMT" hits using threshold %f\n", | ^ seagen/filterEST-complicated.C:139:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:139:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 139 | fprintf(logFile, uint32FMT"] uniform: uniform signal strength, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:174:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", | ^ seagen/filterEST-complicated.C:174:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 174 | fprintf(logFile, uint32FMT"] diff: has no clear signal knee, saving the first "uint32FMT" hits out of "uint32FMT" hits, best=%f, worst=%f, largestdiff=%f\n", | ^ seagen/filterEST-complicated.C:228:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:228:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:228:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 228 | fprintf(logFile, uint32FMT"] spike: at "uint32FMT", "uint32FMT" hits saved: thresh=%f, "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:277:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 277 | fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ seagen/filterEST-complicated.C:277:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 277 | fprintf(logFile, uint32FMT"] is an unclassified signal, "uint32FMT" hits saved out of "uint32FMT" hits, best=%f, worst=%f\n", | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/hitReader.o -c seagen/hitReader.C In file included from /<>/libbio/bio.h:4, from seagen/hitReader.H:7, from seagen/hitReader.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5, from seagen/hitReader.H:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-z,relro -Wl,-z,now -o seagen/filterEST seagen/filterEST.o seagen/filterEST-complicated.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterMRNA.o -c seagen/filterMRNA.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterMRNA.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterMRNA.C:7: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/filterMRNA.C:53:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 53 | fprintf(stderr, " scores at least %4.2f AND at least "uint32FMT" bases covered are always output\n", MC, ML); | ^ g++ -Wl,-z,relro -Wl,-z,now -o seagen/filterMRNA seagen/filterMRNA.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterNULL.o -c seagen/filterNULL.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterNULL.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterNULL.C:2: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-z,relro -Wl,-z,now -o seagen/filterNULL seagen/filterNULL.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filtertest.o -c seagen/filtertest.C In file included from /<>/libbio/bio.h:4, from seagen/filtertest.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ seagen/filtertest.C:180:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 180 | fprintf(stderr, "reading hits "uint32FMT"\r", hitsLen); | ^ seagen/filtertest.C:186:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 186 | fprintf(stderr, "reading hits "uint32FMT"\n", hitsLen); | ^ seagen/filtertest.C:308:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C:308:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, "%f %f %f %6.4f %6.4f "uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"\n", | ^ seagen/filtertest.C: In function ‘void ahit_readBinary(aHit*, FILE*)’: seagen/filtertest.C:39:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 39 | fread(a, sizeof(aHit), 1, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/filtertest.C: In function ‘int main(int, char**)’: seagen/filtertest.C:162:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fgets(hitLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o seagen/filtertest seagen/filtertest.o -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/sortHits.o -c seagen/sortHits.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/sortHits.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ seagen/sortHits.C: In member function ‘bool aHitReader::readHit(aHit&)’: seagen/sortHits.C:52:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fgets(buffer, 1024, theFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ seagen/sortHits.C: In member function ‘void aHitTemporary::nextHit()’: seagen/sortHits.C:119:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 119 | fread(&hit, sizeof(aHit), 1, theFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o seagen/sortHits seagen/sortHits.o seagen/aHit.o /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libkmer/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o seagen/filterESTsimple.o -c seagen/filterESTsimple.C In file included from /<>/libbio/bio.h:4, from seagen/aHit.H:4, from seagen/filterESTsimple.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from seagen/aHit.H:5: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from seagen/filterESTsimple.C:12: seagen/hitReader.H:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ seagen/hitReader.H:62:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "hitReader::operator[]()-- ERROR: asked for hit "uint32FMT" out of "uint32FMT".\n", x, _listLen); | ^ g++ -Wl,-z,relro -Wl,-z,now -o seagen/filterESTsimple seagen/filterESTsimple.o seagen/hitReader.o seagen/aHit.o /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/cleanPolishes.o -c sim4dbutils/cleanPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/cleanPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/cleanPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "A big intron is one that is at least "uint32FMT"bp long.\n", intronLimit); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/cleanPolishes sim4dbutils/cleanPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/fixPolishesIID.o -c sim4dbutils/fixPolishesIID.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/fixPolishesIID.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/fixPolishesIID.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/fixPolishesIID sim4dbutils/fixPolishesIID.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/comparePolishes.o -c sim4dbutils/comparePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/comparePolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/comparePolishes.C:308:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:145: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:308:158: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 308 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"OLAPTFMT"\t%f\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%8.3f\t%8.3f\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/comparePolishes.C:452:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 452 | fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); | ^ sim4dbutils/comparePolishes.C:452:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 452 | fprintf(stderr, "ERROR! inA="uint32FMT" inB="uint32FMT"\n", inA, inB); | ^ sim4dbutils/comparePolishes.C:484:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:484:156: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 484 | fprintf(stderr, "IID:"uint32FMTW(8)" good:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\r", | ^ sim4dbutils/comparePolishes.C:520:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:64: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:110: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C:520:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 520 | fprintf(stderr, "\ngood:"uint32FMTW(4)" Anovel:"uint32FMTW(4)" Amulti:"uint32FMTW(4)" Bnovel:"uint32FMTW(4)" Bmulti:"uint32FMTW(4)" hairy:"uint32FMTW(4)"\n", | ^ sim4dbutils/comparePolishes.C: In function ‘int main(int, char**)’: sim4dbutils/comparePolishes.C:74:20: warning: variable ‘doGFF3’ set but not used [-Wunused-but-set-variable] 74 | bool doGFF3; | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/s4p_overlap.o -c sim4dbutils/s4p_overlap.C In file included from /<>/libutil/util++.H:4, from sim4dbutils/s4p_overlap.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/comparePolishes sim4dbutils/comparePolishes.o sim4dbutils/s4p_overlap.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToAtac.o -c sim4dbutils/convertToAtac.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertToAtac.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/convertToAtac.C:279:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:279:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:122: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:286:134: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 286 | fprintf(stdout, "M u dupr"uint32FMT" dupp"uint32FMT" %s:"uint32FMT" "uint32FMT" "uint32FMT" 1 %s:"uint32FMT" "uint32FMT" "uint32FMT" %s\n", | ^ sim4dbutils/convertToAtac.C:330:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 330 | fprintf(stderr, "Fixed "uint32FMT" indel/mismatches.\n", totalFixed); | ^ sim4dbutils/convertToAtac.C: In function ‘int main(int, char**)’: sim4dbutils/convertToAtac.C:241:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 241 | if (e->_estAlignment[aPos] != '-') | ^ sim4dbutils/convertToAtac.C:310:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 310 | if (e->_estAlignment[aPos] != '-') | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToAtac sim4dbutils/convertToAtac.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertToExtent.o -c sim4dbutils/convertToExtent.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertToExtent.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/convertToExtent.C:43:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:88: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:43:118: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 43 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C:50:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 50 | fprintf(stdout, "%s\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t%s\t"uint32FMT"\t"uint32FMT"\t%6.3f\t%6.3f\n", | ^ sim4dbutils/convertToExtent.C: In function ‘int main(int, char**)’: sim4dbutils/convertToExtent.C:59:8: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 59 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertToExtent sim4dbutils/convertToExtent.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/convertPolishes.o -c sim4dbutils/convertPolishes.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/convertPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/convertPolishes.C:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/convertPolishes sim4dbutils/convertPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/detectChimera.o -c sim4dbutils/detectChimera.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/detectChimera.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/detectChimera.C:129:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:129:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:129:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stdout, uint32FMTW(3)"-"uint32FMTW(3)" %s%s ("uint32FMT","uint32FMT")\n", | ^ sim4dbutils/detectChimera.C:153:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stdout, "first "uint32FMT" alignments.\n", maxPts); | ^ sim4dbutils/detectChimera.C: In function ‘int main(int, char**)’: sim4dbutils/detectChimera.C:19:10: warning: variable ‘beVerbose’ set but not used [-Wunused-but-set-variable] 19 | bool beVerbose = false; | ^~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/detectChimera sim4dbutils/detectChimera.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/depthOfPolishes.o -c sim4dbutils/depthOfPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/depthOfPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/depthOfPolishes.C:103:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 103 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\t%.2f\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/depthOfPolishes sim4dbutils/depthOfPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/filterPolishes.o -c sim4dbutils/filterPolishes.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/filterPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/filterPolishes.C:8: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/filterPolishes.C:178:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:178:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:178:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 178 | fprintf(stderr, "Filtering at "uint32FMT"%% coverage and "uint32FMT"%% identity and "uint32FMT"bp.\n", minC, minI, minL); | ^ sim4dbutils/filterPolishes.C:181:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); | ^ sim4dbutils/filterPolishes.C:181:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 181 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT" and genomic idx "uint32FMT"\n", cdna, geno); | ^ sim4dbutils/filterPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stderr, "Filtering for cDNA idx "uint32FMT".\n", cdna); | ^ sim4dbutils/filterPolishes.C:185:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 185 | fprintf(stderr, "Filtering for genomic idx "uint32FMT".\n", geno); | ^ sim4dbutils/filterPolishes.C:259:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", | ^ sim4dbutils/filterPolishes.C:259:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 259 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\r", | ^ sim4dbutils/filterPolishes.C:264:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 264 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\r", | ^ sim4dbutils/filterPolishes.C:274:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 274 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", | ^ sim4dbutils/filterPolishes.C:274:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 274 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed) ("uint64FMT" failed/intractable)\n", | ^ sim4dbutils/filterPolishes.C:279:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 279 | fprintf(stderr, " Filter: %6.2f%% ("uint64FMT" matches processed)\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/filterPolishes sim4dbutils/filterPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/headPolishes.o -c sim4dbutils/headPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/headPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/headPolishes sim4dbutils/headPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mappedCoverage.o -c sim4dbutils/mappedCoverage.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/mappedCoverage.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/mappedCoverage.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/mappedCoverage.C:94:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 94 | fprintf(stderr, "Found "uint32FMT" sequences in the input file.\n", covMax); | ^ sim4dbutils/mappedCoverage.C:130:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:130:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:153:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:153:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stderr, "ERROR: Found iid "uint32FMT", but only allocated "uint32FMT" places!\n", | ^ sim4dbutils/mappedCoverage.C:219:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:219:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:219:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 219 | fprintf(stderr, "ERROR: range "uint32FMT"-"uint32FMT" out of bounds (seqLen = "uint32FMT")\n", | ^ sim4dbutils/mappedCoverage.C:242:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C:242:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C:242:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 242 | fprintf(C, uint32FMT"\t"uint32FMT"\t%5.3f\t"uint32FMT"\t"uint32FMT"\n", | ^ sim4dbutils/mappedCoverage.C: In function ‘int main(int, char**)’: sim4dbutils/mappedCoverage.C:106:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets(inLine, 1024, stdin); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mappedCoverage sim4dbutils/mappedCoverage.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/mergePolishes.o -c sim4dbutils/mergePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/mergePolishes.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/mergePolishes.C: In function ‘int main(int, char**)’: sim4dbutils/mergePolishes.C:139:10: warning: ‘void operator delete(void*, std::size_t)’ called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 139 | delete inMatch; | ^~~~~~~ sim4dbutils/mergePolishes.C:28:62: note: returned from ‘void* operator new [](std::size_t)’ 28 | sim4polishReader **inMatch = new sim4polishReader * [argc]; | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/mergePolishes sim4dbutils/mergePolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/parseSNP.o -c sim4dbutils/parseSNP.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/parseSNP.C:9: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/parseSNP.C:10: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/parseSNP.C:229:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:75: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:229:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 229 | fprintf(F, "%s %s "uint32FMT" %c/%c %s global["uint32FMT" "uint32FMT"] exon["uint32FMT" "uint32FMT" "uint32FMT" "uint32FMT"]\n", | ^ sim4dbutils/parseSNP.C:269:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:98: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:113: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:269:143: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 269 | fprintf(F, "%s %s "uint32FMT" sa=%c ga=%c mo=%c pi="uint32FMT" pc="uint32FMT" nb="uint32FMT" bl="uint32FMT" bp="uint32FMT" bi="uint32FMT" bc="uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:538:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 538 | fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", | ^ sim4dbutils/parseSNP.C:538:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 538 | fprintf(stderr, "ERROR: Polishes not sorted by SNP idx! this="uint32FMT", looking for "uint32FMT"\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/parseSNP sim4dbutils/parseSNP.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPolish.o -c sim4dbutils/pickBestPolish.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickBestPolish.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickBestPolish.C:6: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/pickBestPolish.C:35:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:35:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:35:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 35 | fprintf(O, uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(4)" "uint32FMTW(4), | ^ sim4dbutils/pickBestPolish.C:39:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:39:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 39 | fprintf(O, " ("uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(6)"/"uint32FMTW(6)" "uint32FMTW(3)")", | ^ sim4dbutils/pickBestPolish.C:69:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 69 | fprintf(stderr, "Picking Best for estID="uint32FMT" with %5d choices.\r", p[0]->_estID, pNum); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPolish sim4dbutils/pickBestPolish.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickBestPair.o -c sim4dbutils/pickBestPair.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickBestPair.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickBestPair.C:6: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/pickBestPair.C:546:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:546:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 546 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:52: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:569:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 569 | fprintf(LOG, "%c "uint32FMT" "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s ("uint32FMT","uint32FMT") "uint32FMT" %s\n", | ^ sim4dbutils/pickBestPair.C:584:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 584 | fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); | ^ sim4dbutils/pickBestPair.C:584:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 584 | fprintf(STA, "alignments: "uint32FMT" "uint32FMT"\n", mr1END, mr2END); | ^ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:266:19: warning: variable ‘minIdent’ set but not used [-Wunused-but-set-variable] 266 | double minIdent = 0; | ^~~~~~~~ sim4dbutils/pickBestPair.C:267:19: warning: variable ‘minLength’ set but not used [-Wunused-but-set-variable] 267 | double minLength = 0; | ^~~~~~~~~ sim4dbutils/pickBestPair.C:268:19: warning: variable ‘minCoverage’ set but not used [-Wunused-but-set-variable] 268 | double minCoverage = 0; | ^~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMR(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&)’: sim4dbutils/pickBestPair.C:123:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:124:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:125:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 125 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:126:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 126 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:129:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘bool readMRcoords(FILE*, mapResult&, bool&)’: sim4dbutils/pickBestPair.C:189:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:190:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:191:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 191 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:192:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 192 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:195:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 195 | fgets(line, 1024, in); | ~~~~~^~~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C: In function ‘int main(int, char**)’: sim4dbutils/pickBestPair.C:354:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | fgets(LL, 10240, IN); | ~~~~~^~~~~~~~~~~~~~~ sim4dbutils/pickBestPair.C:365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 365 | fgets(LL, 10240, IN); | ~~~~~^~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickBestPair sim4dbutils/pickBestPair.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/pickUniquePolish.o -c sim4dbutils/pickUniquePolish.C In file included from /<>/libbio/bio.h:4, from sim4dbutils/pickUniquePolish.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/pickUniquePolish.C:7: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/pickUniquePolish sim4dbutils/pickUniquePolish.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/plotCoverageVsIdentity.o -c sim4dbutils/plotCoverageVsIdentity.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/plotCoverageVsIdentity.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/plotCoverageVsIdentity.C:32:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(S, uint32FMT" "uint32FMT"\n", p->_percentIdentity, p->_querySeqIdentity); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/plotCoverageVsIdentity sim4dbutils/plotCoverageVsIdentity.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeDuplicate.o -c sim4dbutils/removeDuplicate.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/removeDuplicate.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeDuplicate sim4dbutils/removeDuplicate.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/sortPolishes.o -c sim4dbutils/sortPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/sortPolishes.C:7: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/sortPolishes.C:87:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:70: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C:87:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 87 | fprintf(stderr, "Read: "uint32FMTW(8)" polishes -- "uint32FMTW(5)" temporary files -- "uint64FMTW(5)"MB / "uint64FMTW(5)"MB -- "uint64FMTW(5)" bytes/polish\r", | ^ sim4dbutils/sortPolishes.C: In function ‘sim4polish* savePolish(sim4polish*, uint64*)’: sim4dbutils/sortPolishes.C:39:9: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polish’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 39 | memcpy(r, q, sizeof(sim4polish)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:99:7: note: ‘class sim4polish’ declared here 99 | class sim4polish { | ^~~~~~~~~~ sim4dbutils/sortPolishes.C:59:9: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of non-trivially copyable type ‘class sim4polishExon’; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 59 | memcpy(r->_exons, q->_exons, sizeof(sim4polishExon) * q->_numExons); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libsim4/sim4polish/sim4polish.H:49:7: note: ‘class sim4polishExon’ declared here 49 | class sim4polishExon { | ^~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/sortPolishes sim4dbutils/sortPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/summarizePolishes.o -c sim4dbutils/summarizePolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/summarizePolishes.C:4: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/summarizePolishes.C:167:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 167 | fprintf(stderr, "numSeqs: "uint32FMT"\n", numSeqs); | ^ sim4dbutils/summarizePolishes.C:169:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 169 | fprintf(stderr, "ids: "uint32FMT" -- ", idLen); | ^ sim4dbutils/summarizePolishes.C:171:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 171 | fprintf(stderr, " "uint32FMT"", id[i]); | ^ sim4dbutils/summarizePolishes.C:173:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 173 | fprintf(stderr, "cvs: "uint32FMT" -- ", cvLen); | ^ sim4dbutils/summarizePolishes.C:175:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 175 | fprintf(stderr, " "uint32FMT"", cv[i]); | ^ sim4dbutils/summarizePolishes.C:244:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:244:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 244 | fprintf(stdout, uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:78: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ sim4dbutils/summarizePolishes.C:247:125: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 247 | fprintf(stdout, uint32FMTW(3)" "uint32FMTW(3)": mapped="uint32FMTW(8)" notmapped="uint32FMTW(8)" est="uint32FMTW(8)" gen="uint32FMTW(8)"\n", id[i], cv[c], mapped, notmapped, uniqest, uniqgen); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/summarizePolishes sim4dbutils/summarizePolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/uniqPolishes.o -c sim4dbutils/uniqPolishes.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/uniqPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/uniqPolishes sim4dbutils/uniqPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/vennPolishes.o -c sim4dbutils/vennPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/vennPolishes.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/vennPolishes.C:115:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 115 | fprintf(stderr, "WARNING: You gave me "uint32FMT" files! That's pretty big. I don't know\n", numFiles); | ^ sim4dbutils/vennPolishes.C:175:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 175 | fprintf(stdout, " "uint32FMTW(8)" ", counts[index]); | ^ sim4dbutils/vennPolishes.C:183:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 183 | fprintf(stdout, "%c = ("uint32FMTW(8)" total) %s\n", 'A' + (char)i, sizes[i], argv[i+numArgs]); | ^ sim4dbutils/vennPolishes.C:189:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 189 | fprintf(stdout, "] "uint32FMT"\n", counts[index]); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/vennPolishes sim4dbutils/vennPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/realignPolishes.o -c sim4dbutils/realignPolishes.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/realignPolishes.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/realignPolishes.C:160:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:160:89: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 160 | "MERGE: "uint32FMTW(4)"-"uint32FMTW(4)" (%6.2f,%6.2f) "uint32FMTW(4)"-"uint32FMTW(4) | ^ sim4dbutils/realignPolishes.C:161:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:57: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:161:87: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 161 | " and "uint32FMTW(8)"-"uint32FMTW(8)" (%6.2f,%6.2f) "uint32FMTW(8)"-"uint32FMTW(8)"\n", | ^ sim4dbutils/realignPolishes.C:243:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); | ^ sim4dbutils/realignPolishes.C:243:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 243 | fprintf(stdout, "WARNING: CHANGED! "uint32FMT" -> "uint32FMT"\n", nm, p->_numMatches); | ^ sim4dbutils/realignPolishes.C:248:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(mergeLog, "MERGED\tEST\t"uint32FMT"\tfrom\t%8.3f\t%8.3f\tto\t%8.3f\t%8.3f\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/realignPolishes sim4dbutils/realignPolishes.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/removeRedundant.o -c sim4dbutils/removeRedundant.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4dbutils/removeRedundant.C:5: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/removeRedundant.C:107:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:107:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:107:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 107 | fprintf(stderr, "IID="uint32FMTW(8)" -- overlap:"uint32FMT" noOverlap:"uint32FMT"\r", | ^ sim4dbutils/removeRedundant.C:212:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", | ^ sim4dbutils/removeRedundant.C:212:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 212 | fprintf(stderr, "\nNOT A PERFECT CLIQUE! Found "uint32FMT" overlaps, wanted "uint32FMT" in the clique.\n", | ^ sim4dbutils/removeRedundant.C:260:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", | ^ sim4dbutils/removeRedundant.C:260:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 260 | fprintf(stderr, "\nmatches withOvl:"uint32FMT" withoutOvl:"uint32FMT"\n", | ^ sim4dbutils/removeRedundant.C:262:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 262 | fprintf(stderr, "not perfect clique:"uint32FMT"\n", notPerfectClique); | ^ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/removeRedundant sim4dbutils/removeRedundant.o sim4dbutils/s4p_overlap.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4dbutils/reportAlignmentDifferences.o -c sim4dbutils/reportAlignmentDifferences.C In file included from /<>/libutil/util++.H:4, from /<>/libsim4/sim4polish/sim4polish.H:11, from /<>/libsim4/sim4.H:1, from sim4dbutils/reportAlignmentDifferences.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4dbutils/reportAlignmentDifferences.C: In function ‘int main(int, char**)’: sim4dbutils/reportAlignmentDifferences.C:155:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 155 | if (e->_estAlignment[aPos] != '-') | ^ sim4dbutils/reportAlignmentDifferences.C:201:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system(gnuCmd); | ~~~~~~^~~~~~~~ sim4dbutils/reportAlignmentDifferences.C:200:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4086 [-Wformat-overflow=] 200 | sprintf(gnuCmd, "gnuplot < %s", gnuName); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:980, from sim4dbutils/reportAlignmentDifferences.C:1: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int main(int, char**)’ at sim4dbutils/reportAlignmentDifferences.C:200:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4dbutils/reportAlignmentDifferences sim4dbutils/reportAlignmentDifferences.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libsim4/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o sim4db/sim4th.o -c sim4db/sim4th.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from sim4db/sim4th.C:34: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ sim4db/sim4th.C:327:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 327 | sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", | ^ sim4db/sim4th.C:327:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 327 | sprintf(str, "%s -Y "uint32FMT" "uint32FMT"\n", | ^ sim4db/sim4th.C: In function ‘void writer(void*, void*)’: sim4db/sim4th.C:316:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 316 | write(fOutput, o, strlen(o) * sizeof(char)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4db/sim4th.C:332:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | write(fYesNo, str, strlen(str) * sizeof(char)); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o sim4db/sim4db sim4db/sim4th.o /<>/libsim4/libsim4.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/snapper2.o -c snapper/snapper2.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/snapper2.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.C:59:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:59:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 59 | fprintf(F, "%6.4f %6.4f %6.4f %6.4f %6.4f "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)" "uint32FMTW(8)"\n", | ^ snapper/snapper2.C:248:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", | ^ snapper/snapper2.C:248:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 248 | fprintf(stderr, "WARNING: Found "uint32FMT" queries shorter than minimum reportable size (-discardexonlength = "uint32FMT")\n", | ^ snapper/snapper2.C:254:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 254 | fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", | ^ snapper/snapper2.C:254:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 254 | fprintf(stderr, "WARNING: Found "uint32FMT" queries longer than maximum size ("uint32FMT")\n", | ^ snapper/snapper2.C:295:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", | ^ snapper/snapper2.C:295:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 295 | fprintf(stderr, "Created "uint32FMT" filters (out of "uint32FMT" available) to test/validate.\n", | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ snapper/snapper2.C: In function ‘void writerThread(void*, void*)’: snapper/snapper2.C:155:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | write(resultFILE, qry->theOutput, sizeof(char) * qry->theOutputLen); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/libutil/logMsg.H: In member function ‘void logMsg::write(int, const char*)’: /<>/libutil/logMsg.H:85:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | ::write(file, _log, sizeof(char) * _logLen); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/configuration.o -c snapper/configuration.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/configuration.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/configuration.C:205:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 205 | fprintf(stderr, "ERROR: Invalid afLength "uint32FMT", should be < 64.\n", _afLength), err++; | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-search.o -c snapper/thr-search.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-search.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-filter.o -c snapper/thr-filter.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-filter.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish.o -c snapper/thr-polish.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/thr-polish.C:311:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/thr-polish.C:311:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 311 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/thr-polish-dp.o -c snapper/thr-polish-dp.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/thr-polish-dp.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/thr-polish-dp.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); | ^ snapper/thr-polish-dp.C:89:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 89 | fprintf(stderr, "dpMatrix-- reallocate to "uint32FMT" x "uint32FMT"\n", aMax, bMax); | ^ snapper/thr-polish-dp.C:441:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 441 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/thr-polish-dp.C:441:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 441 | fprintf(stderr, "doPolish()-- Can't reallocate space for the output string ("uint32FMT" bytes) in thread "uint64FMT"\n", qry->theOutputMax, state->threadID); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix.o -c snapper/hitMatrix.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/hitMatrix.C:385:27: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 385 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); | ^ snapper/hitMatrix.C:385:95: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 385 | fprintf(stderr, "hitMatrix::filter()-- tried to extend output string from "uint32FMT" to "uint32FMT".\n", theHitsPos, theHitsMax); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ snapper/hitMatrix.C: In member function ‘void hitMatrix::filter(char, double, uint32, aHit*&, uint32&, uint32&)’: snapper/hitMatrix.C:383:23: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 383 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o snapper/hitMatrix-sort.o -c snapper/hitMatrix-sort.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from snapper/snapper2.H:18, from snapper/hitMatrix-sort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from snapper/snapper2.H:20: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ snapper/snapper2.H:421:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H:421:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 421 | fprintf(stderr, "hitMatrix::addHits()-- have "uint32FMT" hits, tried to add "uint64FMT" more\n", _hitsLen, cn); | ^ snapper/snapper2.H: In member function ‘void hitMatrix::addHits(uint32, uint64*, uint64, uint64)’: snapper/snapper2.H:419:19: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 419 | } catch (std::bad_alloc) { | ^~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o snapper/snapper2 snapper/snapper2.o snapper/configuration.o snapper/thr-search.o snapper/thr-filter.o snapper/thr-polish.o snapper/thr-polish-dp.o snapper/hitMatrix.o snapper/hitMatrix-sort.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tagger.o -c tapper/tagger.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tagger.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tagger.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tagger.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tagger.C:151:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 151 | fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); | ^ tapper/tagger.C:152:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 152 | fprintf(stdout, "%s\tnumMates\t"uint64FMT"\n", tagfile, TF->numberOfMatePairs()); | ^ tapper/tagger.C:153:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 153 | fprintf(stdout, "%s\tmean\t"uint32FMT"\n", tagfile, TF->metaData()->mean()); | ^ tapper/tagger.C:154:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 154 | fprintf(stdout, "%s\tstddev\t"uint32FMT"\n", tagfile, TF->metaData()->stddev()); | ^ tapper/tagger.C:157:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 157 | fprintf(stdout, "%s\tlength\t"uint32FMT"\n", tagfile, TF->metaData()->tagSize()); | ^ tapper/tagger.C:158:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 158 | fprintf(stdout, "%s\tnumTags\t"uint64FMT"\n", tagfile, TF->numberOfFragmentTags()); | ^ tapper/tagger.C:182:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:92: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:104: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:182:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 182 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\t>"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:191:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 191 | fprintf(stdout, ">"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t%s/%s\n", | ^ tapper/tagger.C:362:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tagger.C:362:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 362 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t0\t"uint32FMT"\t%c\t%s%s\t%s\n", | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tagger.C: In function ‘bool readTag(uint32, FILE*, FILE*, tapperTag*)’: tapper/tagger.C:52:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | fgets(seqhdr, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:54:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 54 | fgets(seqhdr, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:55:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets(seqseq, 1024, seq); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:57:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets(qlthdr, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 59 | fgets(qlthdr, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ tapper/tagger.C:60:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | fgets(qltseq, 1024, qlt); | ~~~~~^~~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o tapper/tagger tapper/tagger.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapper.o -c tapper/tapper.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapper.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tapper.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tapper.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapper.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapper.C:633:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 633 | fprintf(stderr, "Reallocate t->numHappiesMax to "uint32FMT"\n", t->numHappiesMax); | ^ tapper/tapper.C:1048:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1048 | fprintf(stderr, "sizeof(tapperResultIndex) -- "sizetFMT"\n", sizeof(tapperResultIndex)); | ^ tapper/tapper.C:1049:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1049 | fprintf(stderr, "sizeof(tapperResultQV) -- "sizetFMT"\n", sizeof(tapperResultQV)); | ^ tapper/tapper.C:1050:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1050 | fprintf(stderr, "sizeof(tapperResultFragment) -- "sizetFMT"\n", sizeof(tapperResultFragment)); | ^ tapper/tapper.C:1051:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1051 | fprintf(stderr, "sizeof(tapperResultMated) -- "sizetFMT"\n", sizeof(tapperResultMated)); | ^ tapper/tapper.C:1052:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1052 | fprintf(stderr, "sizeof(tapperResultTangled) -- "sizetFMT"\n", sizeof(tapperResultTangled)); | ^ tapper/tapper.C:1053:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1053 | fprintf(stderr, "sizeof(tapperHit) -- "sizetFMT"\n", sizeof(tapperHit)); | ^ tapper/tapper.C:1054:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1054 | fprintf(stderr, "sizeof(tapperTag) -- "sizetFMT"\n", sizeof(tapperTag)); | ^ tapper/tapper.C:1124:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 1124 | fprintf(stderr, " all alignments. The default is "uint32FMT".\n", g->repeatThreshold); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tapper.C: In member function ‘bool tapperHit::alignToReference(tapperGlobalData*, uint32, uint32, char*, uint32)’: tapper/tapper.C:399:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 399 | if (_colorMismatch + _colorInconsistent > g->maxColorError) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ tapper/tapper.C:415:23: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 415 | for (uint32 ti=0; ti<_len-1; ti++) { | ~~^~~~~~~ In file included from /<>/libutil/recordFile.H:6, from /<>/libutil/util++.H:39: tapper/tapper.C:468:13: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 468 | assert(nn == _colorMismatch + _colorInconsistent); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from tapper/tapper.C:7: tapper/tapperComputation.H: In constructor ‘tapperComputation::tapperComputation(tapperTag*, tapperTag*)’: tapper/tapperComputation.H:51:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 51 | tag1rseq[tag1size-1] = complementSymbol[tag1rseq[tag1size-1]]; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tapper/tapperComputation.H:186:38: note: at offset 4294967295 into destination object ‘tapperComputation::tag1rseq’ of size 32 186 | char tag1fseq[TAG_LEN_MAX], tag1rseq[TAG_LEN_MAX]; | ^~~~~~~~ tapper/tapperComputation.H:75:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 75 | tag2rseq[tag2size-1] = complementSymbol[tag2rseq[tag2size-1]]; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tapper/tapperComputation.H:187:38: note: at offset 4294967295 into destination object ‘tapperComputation::tag2rseq’ of size 32 187 | char tag2fseq[TAG_LEN_MAX], tag2rseq[TAG_LEN_MAX]; | ^~~~~~~~ In constructor ‘tapperComputation::tapperComputation(tapperTag*, tapperTag*)’, inlined from ‘void* tapperReader(void*)’ at tapper/tapper.C:28:39: tapper/tapperComputation.H:51:28: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 51 | tag1rseq[tag1size-1] = complementSymbol[tag1rseq[tag1size-1]]; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tapper/tapperComputation.H: In function ‘void* tapperReader(void*)’: tapper/tapperComputation.H:186:38: note: at offset 4294967295 into destination object ‘tapperComputation::tag1rseq’ of size 32 186 | char tag1fseq[TAG_LEN_MAX], tag1rseq[TAG_LEN_MAX]; | ^~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now -o tapper/tapper tapper/tapper.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tapperconvert.o -c tapper/tapperconvert.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tapperconvert.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tapperconvert.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tapperconvert.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tapperconvert.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-z,relro -Wl,-z,now -o tapper/tapperconvert tapper/tapperconvert.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappermerge.o -c tapper/tappermerge.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from tapper/tapperTag.H:1, from tapper/tappermerge.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappermerge.C:2: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappermerge.C:4: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappermerge.C:5: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-z,relro -Wl,-z,now -o tapper/tappermerge tapper/tappermerge.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappersort.o -c tapper/tappersort.C In file included from /<>/libutil/util++.H:4, from tapper/tappersort.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from tapper/tappersort.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappersort.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappersort.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappersort.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tappersort.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, outputIndex); | ^ tapper/tappersort.C:150:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 150 | fprintf(stderr, "Writing "uint32FMT" sorted alignments to '%s'\n", aliLen, filename); | ^ tapper/tappersort.C:202:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:202:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:202:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 202 | fprintf(stderr, "Can fit "uint32FMT" alignments into "uint64FMT" bytes memory; "uint32FMT" bytes each.\n", | ^ tapper/tappersort.C:257:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 257 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); | ^ tapper/tappersort.C:299:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 299 | sprintf(filename, "%s."uint32FMTW(03)".tapperAlignment", outputName, x); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int g++ -Wl,-z,relro -Wl,-z,now -o tapper/tappersort tapper/tappersort.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libutil/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libmeryl/ -I/<>/libkmer/ -I/<>/libsim4/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o tapper/tappererrorcorrect.o -c tapper/tappererrorcorrect.C In file included from /<>/libutil/util++.H:4, from tapper/tappererrorcorrect.C:1: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from tapper/tappererrorcorrect.C:3: tapper/tapperTag.H:204:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 204 | fprintf(stderr, "tapperTagFile()-- ERROR! Tag file was built with TAPPER_TAG_WORDS="uint32FMT", but code has %d.\n", | ^ In file included from tapper/tappererrorcorrect.C:4: tapper/tapperResult.H:41:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:105: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:117: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:130: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:142: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:155: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:168: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:183: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:198: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:41:228: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^ tapper/tapperResult.H:116:2: warning: #warning do not know real tag length [-Wcpp] 116 | #warning do not know real tag length | ^~~~~~~ tapper/tapperResult.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:132:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:86: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:99: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:116: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:155:128: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 155 | fprintf(stdout, "F\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t'%s'\n", | ^ tapper/tapperResult.H:187:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:114: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:126: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:138: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:151: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:163: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:175: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:187: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:200: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:213: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:230: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:187:242: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 187 | fprintf(stdout, "M\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t%c\t"uint32FMT"/"uint32FMT"/"uint32FMT"\n", | ^ tapper/tapperResult.H:224:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:84: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:109: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:121: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:133: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:146: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:159: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ tapper/tapperResult.H:224:172: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 224 | fprintf(stdout, "T\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\t"uint32FMT"\n", | ^ In file included from tapper/tappererrorcorrect.C:6: tapper/tapperHit.H:17:17: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:43: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ tapper/tapperHit.H:17:83: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, | ^ In file included from tapper/tapperGlobalData.H:1, from tapper/tappererrorcorrect.C:7: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ tapper/tapperGlobalData.H:109:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:109:61: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 109 | fprintf(stderr, "ERROR: invalid partition n="uint32FMT" m="uint32FMT".\n", thisPartition, numPartitions); | ^ tapper/tapperGlobalData.H:120:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:50: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:71: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:120:97: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 120 | fprintf(stderr, "Set partition for "uint64FMT" frags or "uint64FMT" mates: -begin "uint32FMT" -end "uint32FMT"\n", | ^ tapper/tapperGlobalData.H:144:20: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tapperGlobalData.H:144:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 144 | sprintf(colName, "%s.ms"uint32FMT".ce"uint32FMT".posDB", genName, tagSize, maxColorError); | ^ tapper/tappererrorcorrect.C:25:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); | ^ tapper/tappererrorcorrect.C:25:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 25 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", i, alignsLen[i]); | ^ tapper/tappererrorcorrect.C:49:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 49 | fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", | ^ tapper/tappererrorcorrect.C:49:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 49 | fprintf(stderr, "block[0] - seq "uint32FMT" pos "uint32FMT"\n", | ^ tapper/tappererrorcorrect.C:62:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); | ^ tapper/tappererrorcorrect.C:62:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 62 | fprintf(stderr, "block "uint32FMT" has "uint32FMT" things.\n", alignsMax-1, alignsLen[alignsMax-1]); | ^ tapper/tappererrorcorrect.C:160:2: warning: #warning need the real read size here [-Wcpp] 160 | #warning need the real read size here | ^~~~~~~ tapper/tappererrorcorrect.C:213:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 213 | fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); | ^ tapper/tappererrorcorrect.C:213:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 213 | fprintf(stdout, "\nALIGN "uint32FMT"-"uint32FMT"\n", winLo, winHi); | ^ tapper/tapperResult.H: In member function ‘void tapperResultIndex::print(FILE*)’: tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 12 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 44 | _maxColrMismatchMapped, _maxBaseMismatchMapped, | ~~~~~~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 13 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 14 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 45 | _mean, _stddev, | ~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 15 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 16 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 17 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 18 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~ | | | int tapper/tapperResult.H:41:18: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 19 has type ‘int’ [-Wformat=] 41 | fprintf(out, "R\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint16FMT"_"uint16FMT"_"uint16FMT"_"uint16FMT"\t"uint64FMT"/"uint64FMT"\t"uint64FMT"+-"uint64FMT"\tf:"uint64FMT"\td:"uint64FMT"\ts:"uint64FMT"\tm:"uint64FMT"\tt:"uint64FMT"\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 46 | _numFrag, _numFragDiscarded, _numFragSingleton, _numMated, _numTangled); | ~~~~~~~~~~~ | | | int tapper/tapperHit.H: In member function ‘char* tapperHit::printHit(char*, uint64)’: tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~ | | | int tapper/tapperHit.H:17:17: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 17 | sprintf(OS, "0x"uint64FMT"\t"uint32FMT":"uint32FMT":%c\t"uint64FMT","uint64FMT","uint64FMT, ...... 20 | _basesMismatch, _colorMismatch, _colorInconsistent); | ~~~~~~~~~~~~~~~~~~ | | | int tapper/tappererrorcorrect.C: In function ‘int main(int, char**)’: tapper/tappererrorcorrect.C:102:13: warning: variable ‘memoryLimit’ set but not used [-Wunused-but-set-variable] 102 | uint64 memoryLimit = 1024 * 1024 * 1024; | ^~~~~~~~~~~ tapper/tappererrorcorrect.C:141:21: warning: unused variable ‘id’ [-Wunused-variable] 141 | uint16 id[4]; | ^~ g++ -Wl,-z,relro -Wl,-z,now -o tapper/tappererrorcorrect tapper/tappererrorcorrect.o /<>/libsim4/libsim4.a /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/driver-existDB.o -c /<>/libkmer/driver-existDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/driver-existDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ /<>/libkmer/driver-existDB.C:53:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 53 | fprintf(stderr, "mer "uint64HEX" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); | ^ /<>/libkmer/driver-existDB.C:56:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | fprintf(stderr, "mer "uint64HEX" count differs : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); | ^ /<>/libkmer/driver-existDB.C:65:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | fprintf(stderr, "mer "uint64HEX" : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); | ^ /<>/libkmer/driver-existDB.C:96:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); | ^ /<>/libkmer/driver-existDB.C:96:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 96 | fprintf(stderr, "Tried "uint64FMT", didn't find "uint64FMT" merStream mers in the existDB.\n", tried, lost); | ^ /<>/libkmer/driver-existDB.C:128:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "Found "uint64FMT" mers in the meryl database.\n", expected); | ^ /<>/libkmer/driver-existDB.C:148:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", | ^ /<>/libkmer/driver-existDB.C:148:49: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 148 | fprintf(stderr, "Expected to find "uint64FMT" mers, but found "uint64FMT" instead.\n", | ^ g++ -Wl,-z,relro -Wl,-z,now -o /<>/libkmer/existDB /<>/libkmer/driver-existDB.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/<>/libmeryl/ -I/<>/libbio/ -I/<>/libseq/ -I/<>/libutil/ -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libkmer/driver-posDB.o -c /<>/libkmer/driver-posDB.C In file included from /<>/libbio/bio.h:4, from /<>/libbio/bio++.H:14, from /<>/libkmer/driver-posDB.C:6: /<>/libutil/util.h:55:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 55 | #define uint64FMT "%"PRIu64 | ^ /<>/libutil/util.h:56:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 56 | #define uint64HEX "0x%016"PRIx64 | ^ /<>/libutil/util.h:58:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 58 | #define int64FMT "%"PRId64 | ^ /<>/libutil/util.h:65:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 65 | #define uint32FMT "%"PRIu32 | ^ /<>/libutil/util.h:66:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 66 | #define uint32HEX "0x%08"PRIx32 | ^ /<>/libutil/util.h:68:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | #define int32FMT "%"PRId32 | ^ /<>/libutil/util.h:75:26: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | #define uint16FMT "%"PRIu16 | ^ In file included from /<>/libutil/util++.H:37, from /<>/libbio/bio++.H:15: /<>/libutil/bitPackedArray.H:222:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ /<>/libutil/bitPackedArray.H:222:39: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 222 | fprintf(stderr, "HEAP["uint32FMT"]="uint64FMT"\n", i, _array->get(i)); | ^ In file included from /<>/libutil/util++.H:38: /<>/libutil/bitPackedFile.H:32:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ /<>/libutil/bitPackedFile.H:32:35: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 32 | fprintf(f, "inside: "uint64FMT" outside: "uint64FMT"\n", stat_seekInside, stat_seekOutside); | ^ In file included from /<>/libutil/util++.H:43: /<>/libutil/logMsg.H:75:15: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 75 | "logMsg::add()-- HEY! I wrote "uint32FMT" bytes beyond the end of the buffer!\n" | ^ In file included from /<>/libkmer/driver-posDB.C:8: /<>/libkmer/positionDB.H:127:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 127 | fprintf(stderr, "shift1 = "uint32FMT"\n", _shift1); | ^ /<>/libkmer/positionDB.H:128:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 128 | fprintf(stderr, "shift2 = "uint32FMT"\n", _shift2); | ^ /<>/libkmer/positionDB.H:129:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 129 | fprintf(stderr, "M = "uint64HEX"\n", m); | ^ /<>/libkmer/positionDB.H:130:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 130 | fprintf(stderr, "H = "uint64HEX"\n", h); | ^ /<>/libkmer/positionDB.H:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 131 | fprintf(stderr, "C = "uint64HEX"\n", c); | ^ /<>/libkmer/positionDB.H:132:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 132 | fprintf(stderr, "R = "uint64HEX"\n", r); | ^ /<>/libkmer/driver-posDB.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:53: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:54:72: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 54 | fprintf(stdout, "%s @ "uint64FMT"/"uint64FMT": Found "uint64FMT" table entries, and "uint32FMT" matching positions (", | ^ /<>/libkmer/driver-posDB.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 68 | fprintf(stdout, "Found no matches for mer=%s at pos="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:101:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 101 | fprintf(stdout, "Got a F match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:110:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 110 | fprintf(stdout, "Got a R match for mer=%s at "uint64FMT"/"uint64FMT" (in mers), numMatches="uint64FMT"\n", | ^ /<>/libkmer/driver-posDB.C:255:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", | ^ /<>/libkmer/driver-posDB.C:255:48: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 255 | fprintf(stderr, "ERROR: merbegin="uint64FMT" and merend="uint64FMT" are incompatible.\n", | ^ /<>/libkmer/driver-posDB.C:275:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); | ^ /<>/libkmer/driver-posDB.C:275:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 275 | fprintf(stderr, "Building table with merSize "uint32FMT", merSkip "uint32FMT"\n", mersize, merskip); | ^ g++ -Wl,-z,relro -Wl,-z,now -o /<>/libkmer/positionDB /<>/libkmer/driver-posDB.o /<>/libkmer/libkmer.a /<>/libmeryl/libmeryl.a /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-seqCache /<>/libseq/test-seqCache.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-seqStream /<>/libseq/test-seqStream.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm g++ -Wl,-z,relro -Wl,-z,now -o /<>/libseq/test-merStream /<>/libseq/test-merStream.o /<>/libseq/libseq.a /<>/libbio/libbio.a /<>/libutil/libutil.a -pthread -ldl -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /<>/libutil/mt19937ar/test.o -c /<>/libutil/mt19937ar/test.c rm -f /<>/libutil/mt19937ar/libmt19937ar.a && ar ruvs /<>/libutil/mt19937ar/libmt19937ar.a /<>/libutil/mt19937ar/mt19937ar.o /<>/libutil/mt19937ar/test.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/mt19937ar/libmt19937ar.a a - /<>/libutil/mt19937ar/mt19937ar.o a - /<>/libutil/mt19937ar/test.o rm -f /<>/libutil/kazlib/libkaz.a && ar ruvs /<>/libutil/kazlib/libkaz.a /<>/libutil/kazlib/dict.o /<>/libutil/kazlib/except.o /<>/libutil/kazlib/hash.o /<>/libutil/kazlib/list.o /<>/libutil/kazlib/sfx.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating /<>/libutil/kazlib/libkaz.a a - /<>/libutil/kazlib/dict.o a - /<>/libutil/kazlib/except.o a - /<>/libutil/kazlib/hash.o a - /<>/libutil/kazlib/list.o a - /<>/libutil/kazlib/sfx.o make[2]: Leaving directory '/<>' mv installdir/bin/atac.pl installdir/bin/atac mv -v installdir/lib/halignmodule.so installdir/lib/halign.so renamed 'installdir/lib/halignmodule.so' -> 'installdir/lib/halign.so' mv -v installdir/lib/localAlignerInterfacemodule.so installdir/lib/localAlignerInterface.so renamed 'installdir/lib/localAlignerInterfacemodule.so' -> 'installdir/lib/localAlignerInterface.so' make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j2 install DESTDIR=/<>/kmer-0\~20150903\+r2013/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` `grep -l '#!/usr/bin/env \+perl' debian/*/usr/lib/atac/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 --no-ext-rename make[1]: Leaving directory '/<>' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libkmer-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmeryl-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'leaff-dbgsym' in '../leaff-dbgsym_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'kmer' in '../kmer_0~20150903+r2013-8_all.deb'. dpkg-deb: building package 'libkmer-dev' in '../libkmer-dev_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'sim4db' in '../sim4db_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'meryl' in '../meryl_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'meryl-dbgsym' in '../meryl-dbgsym_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'sim4db-dbgsym' in '../sim4db-dbgsym_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'libmeryl-dev' in '../libmeryl-dev_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'leaff' in '../leaff_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'atac' in '../atac_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'atac-dbgsym' in '../atac-dbgsym_0~20150903+r2013-8_amd64.deb'. dpkg-deb: building package 'kmer-examples' in '../kmer-examples_0~20150903+r2013-8_all.deb'. dpkg-genbuildinfo -O../kmer_0~20150903+r2013-8_amd64.buildinfo dpkg-genchanges -O../kmer_0~20150903+r2013-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-04T03:06:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ kmer_0~20150903+r2013-8_amd64.changes: -------------------------------------- Format: 1.8 Date: Sun, 19 Apr 2020 17:59:48 +0200 Source: kmer Binary: atac atac-dbgsym kmer kmer-examples leaff leaff-dbgsym libkmer-dev libmeryl-dev meryl meryl-dbgsym sim4db sim4db-dbgsym Architecture: source amd64 all Version: 0~20150903+r2013-8 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Antoni Villalonga Description: atac - genome assembly-to-assembly comparison kmer - suite of tools for DNA sequence analysis kmer-examples - sample data for kmer suite of tools for DNA sequence analysis leaff - biological sequence library utilities and applications libkmer-dev - suite of tools for DNA sequence analysis (development lib) libmeryl-dev - in- and out-of-core kmer counting and utilities (development lib) meryl - in- and out-of-core kmer counting and utilities sim4db - batch spliced alignment of cDNA sequences to a target genome Closes: 958840 Changes: kmer (0~20150903+r2013-8) unstable; urgency=medium . * Team upload. . [ Antoni Villalonga ] * d/upstream/metadata: Repository and Bug * Updated spelling.patch * Final Python2 to Python3 adjustements Closes: #958840 Checksums-Sha1: 5fedc43e862dac38982c4ea35aae35d8e7923fad 1478 kmer_0~20150903+r2013-8.dsc d3871a71da84d115fd22bedb9654c4200da48743 2379696 kmer_0~20150903+r2013-8.debian.tar.xz 486449b65f5476f319976403a10b57917050f2d6 2669424 atac-dbgsym_0~20150903+r2013-8_amd64.deb 75ba96e7478f7bdc2ccd30f04dc9fc24538f94b4 384224 atac_0~20150903+r2013-8_amd64.deb 330561c6a445d3ba8ba6a6056ee1bfb9fb3c24c3 2352168 kmer-examples_0~20150903+r2013-8_all.deb 3b93783d0c2b932d4a394ca3f6b0b4c2f1d4227e 4864 kmer_0~20150903+r2013-8_all.deb 6b6193359828dd72c1124b30adc91bb92c39d859 9174 kmer_0~20150903+r2013-8_amd64.buildinfo 67820afa1fa963e82049430deaa7677811be1b1c 179252 leaff-dbgsym_0~20150903+r2013-8_amd64.deb cef24528d137d337be03e3e3eac16973f7177ca4 70308 leaff_0~20150903+r2013-8_amd64.deb 2bbe3030d2ade33f37e0d3384e806d02daa5f9ae 200656 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libelf1t64 (= 0.191-2), libexpat1 (= 2.6.2-1), libexpat1-dev (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.3.7-4), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libpython3-dev (= 3.12.4-1), libpython3-stdlib (= 3.12.4-1), libpython3.12-dev (= 3.12.4-3), libpython3.12-minimal (= 3.12.4-3), libpython3.12-stdlib (= 3.12.4-3), libpython3.12t64 (= 3.12.4-3), libquadmath0 (= 14.2.0-1), libreadline8t64 (= 8.2-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libsqlite3-0 (= 3.46.0-1), libssl3t64 (= 3.3.1-2), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), media-types (= 10.1.0), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), python3 (= 3.12.4-1), python3-dev (= 3.12.4-1), python3-minimal (= 3.12.4-1), python3-pkg-resources (= 70.3.0-2), python3-setuptools (= 70.3.0-2), python3.12 (= 3.12.4-3), python3.12-dev (= 3.12.4-3), python3.12-minimal (= 3.12.4-3), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), tzdata (= 2024a-4), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1587311988" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ 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-rw-r--r-- root/root 70176 2020-04-19 15:59 ./usr/lib/debug/.dwz/x86_64-linux-gnu/atac.debug drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-19 15:59 ./usr/share/doc/atac-dbgsym -> atac atac_0~20150903+r2013-8_amd64.deb --------------------------------- new Debian package, version 2.0. size 384224 bytes: control archive=2644 bytes. 1347 bytes, 27 lines control 2937 bytes, 45 lines md5sums 297 bytes, 12 lines * postinst #!/bin/sh 368 bytes, 12 lines * prerm #!/bin/sh Package: atac Source: kmer Version: 0~20150903+r2013-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2776 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2), python3 (<< 3.13), python3 (>= 3.12~), python3.12, python3:any, perl:any, libfile-which-perl, leaff, meryl, gnuplot Recommends: kmer-examples Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: genome assembly-to-assembly comparison atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome. . The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions. . Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences. . 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It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers. . This package contains a test data set as well as sample scripts running some test suite provided by Debian also as autopkgtest. drwxr-xr-x root/root 0 2020-04-19 15:59 ./ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/kmer-examples/ -rw-r--r-- root/root 275 2020-04-19 15:59 ./usr/share/doc/kmer-examples/README.Debian -rw-r--r-- root/root 905 2020-04-19 15:59 ./usr/share/doc/kmer-examples/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/kmer-examples/copyright -rw-r--r-- root/root 2345682 2020-04-19 15:59 ./usr/share/doc/kmer-examples/test_data.tar.gz kmer_0~20150903+r2013-8_all.deb ------------------------------- new Debian package, version 2.0. size 4864 bytes: control archive=716 bytes. 626 bytes, 16 lines control 136 bytes, 2 lines md5sums Package: kmer Version: 0~20150903+r2013-8 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 15 Depends: meryl, leaff, sim4db, atac Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: suite of tools for DNA sequence analysis The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers. . This is a metapackage depending on the executable components of the kmer suite. drwxr-xr-x root/root 0 2020-04-19 15:59 ./ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/kmer/ -rw-r--r-- root/root 904 2020-04-19 15:59 ./usr/share/doc/kmer/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/kmer/copyright leaff-dbgsym_0~20150903+r2013-8_amd64.deb ----------------------------------------- new Debian package, version 2.0. size 179252 bytes: control archive=548 bytes. 383 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: leaff-dbgsym Source: kmer Version: 0~20150903+r2013-8 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 199 Depends: leaff (= 0~20150903+r2013-8) Section: debug Priority: optional Description: debug symbols for leaff Build-Ids: 5de82970a76edaf3f3bba43e1b068b3e86ee246d drwxr-xr-x root/root 0 2020-04-19 15:59 ./ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 192920 2020-04-19 15:59 ./usr/lib/debug/.build-id/5d/e82970a76edaf3f3bba43e1b068b3e86ee246d.debug drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-19 15:59 ./usr/share/doc/leaff-dbgsym -> leaff leaff_0~20150903+r2013-8_amd64.deb ---------------------------------- new Debian package, version 2.0. size 70308 bytes: control archive=868 bytes. 631 bytes, 16 lines control 320 bytes, 5 lines md5sums Package: leaff Source: kmer Version: 0~20150903+r2013-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 202 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 5) Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: biological sequence library utilities and applications LEAFF (Let's Extract Anything From Fasta) is a utility program for working with multi-fasta files. In addition to providing random access to the base level, it includes several analysis functions. . This package is part of the Kmer suite. drwxr-xr-x root/root 0 2020-04-19 15:59 ./ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/bin/ -rwxr-xr-x root/root 180512 2020-04-19 15:59 ./usr/bin/leaff drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/leaff/ -rw-r--r-- root/root 3373 2011-01-20 03:32 ./usr/share/doc/leaff/README.leaff.gz -rw-r--r-- root/root 905 2020-04-19 15:59 ./usr/share/doc/leaff/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/leaff/copyright drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/man/man1/ -rw-r--r-- root/root 2732 2020-04-19 15:59 ./usr/share/man/man1/leaff.1.gz libkmer-dev_0~20150903+r2013-8_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 200656 bytes: control archive=2168 bytes. 635 bytes, 17 lines control 3725 bytes, 54 lines md5sums Package: libkmer-dev Source: kmer Version: 0~20150903+r2013-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 856 Depends: libmeryl-dev Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: suite of tools for DNA sequence analysis (development lib) The kmer package is a suite of tools for DNA sequence analysis. It provides tools for searching (ESTs, mRNAs, sequencing reads); aligning (ESTs, mRNAs, whole genomes); and a variety of analyses based on kmers. . This package contains headers and static libraries for kmer. drwxr-xr-x root/root 0 2020-04-19 15:59 ./ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/include/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/include/kmer/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/include/kmer/bio/ -rw-r--r-- root/root 647 2008-07-28 21:43 ./usr/include/kmer/bio/alphabet.h -rw-r--r-- root/root 381 2008-09-09 23:55 ./usr/include/kmer/bio/bio++.H -rw-r--r-- root/root 766 2014-04-11 20:17 ./usr/include/kmer/bio/bio.h -rw-r--r-- root/root 5588 2014-04-11 20:17 ./usr/include/kmer/bio/kmer.H -rw-r--r-- root/root 10979 2014-04-11 20:17 ./usr/include/kmer/bio/kmerhuge.H -rw-r--r-- root/root 2715 2014-04-11 20:17 ./usr/include/kmer/bio/kmeriface.H -rw-r--r-- root/root 3402 2014-04-11 20:17 ./usr/include/kmer/bio/kmertiny.H -rw-r--r-- root/root 7314 2014-04-11 20:17 ./usr/include/kmer/bio/merCovering.H -rw-r--r-- root/root 2024 2014-04-11 20:17 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15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/libkmer-dev/ -rw-r--r-- root/root 908 2020-04-19 15:59 ./usr/share/doc/libkmer-dev/changelog.Debian.gz -rw-r--r-- root/root 7499 2020-04-19 15:59 ./usr/share/doc/libkmer-dev/copyright libmeryl-dev_0~20150903+r2013-8_amd64.deb ----------------------------------------- new Debian package, version 2.0. size 53096 bytes: control archive=1000 bytes. 910 bytes, 21 lines control 413 bytes, 6 lines md5sums Package: libmeryl-dev Source: kmer Version: 0~20150903+r2013-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 200 Section: libdevel Priority: optional Homepage: http://kmer.sourceforge.net Description: in- and out-of-core kmer counting and utilities (development lib) meryl computes the kmer content of genomic sequences. Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . 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Kmer content is represented as a list of kmers and the number of times each occurs in the input sequences. The kmer can be restricted to only the forward kmer, only the reverse kmer, or the canonical kmer (lexicographically smaller of the forward and reverse kmer at each location). Meryl can report the histogram of counts, the list of kmers and their counts, or can perform mathematical and set operations on the processed data files. . 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15:59 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 37280 2020-04-19 15:59 ./usr/lib/debug/.dwz/x86_64-linux-gnu/sim4db.debug drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 15:59 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-19 15:59 ./usr/share/doc/sim4db-dbgsym -> sim4db sim4db_0~20150903+r2013-8_amd64.deb ----------------------------------- new Debian package, version 2.0. size 442964 bytes: control archive=2132 bytes. 1551 bytes, 30 lines control 3551 bytes, 54 lines md5sums Package: sim4db Source: kmer Version: 0~20150903+r2013-8 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3347 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Recommends: leaff, kmer-examples Section: science Priority: optional Homepage: http://kmer.sourceforge.net Description: batch spliced alignment of cDNA sequences to a target genome Sim4db performs fast batch alignment of large cDNA (EST, mRNA) sequence sets to a set of eukaryotic genomic regions. It uses the sim4 and sim4cc algorithms to determine the alignments, but incorporates a fast sequence indexing and retrieval mechanism, implemented in the sister package 'leaff', to speedily process large volumes of sequences. . While sim4db produces alignments in the same way as sim4 or sim4cc, it has additional features to make it more amenable for use with whole-genome annotation pipelines. A script file can be used to group pairings between cDNAs and their corresponding genomic regions, to be aligned as one run and using the same set of parameters. Sim4db also optionally reports more than one alignment for the same cDNA within a genomic region, as long as they meet user-defined criteria such as minimum length, percentage sequence identity or coverage. This feature is instrumental in finding all alignments of a gene family at one locus. Lastly, the output is presented either as custom sim4db alignments or as GFF3 gene features. . 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root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/depthOfPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/detectChimera.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/filterPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/fixPolishesIID.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/headPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/mappedCoverage.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/mergePolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/parseSNP.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/pickBestPolish.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/pickUniquePolish.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/plotCoverageVsIdentity.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/realignPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/removeDuplicate.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/reportAlignmentDifferences.1.gz -rw-r--r-- root/root 2206 2020-04-19 15:59 ./usr/share/man/man1/sim4db.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/sim4dbutils.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/sortPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/summarizePolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/uniqPolishes.1.gz -rw-r--r-- root/root 1058 2020-04-19 15:59 ./usr/share/man/man1/vennPolishes.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 176976 Build-Time: 154 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 10 Job: /srv/debomatic/incoming/kmer_0~20150903+r2013-8.dsc Machine Architecture: amd64 Package: kmer Package-Time: 173 Source-Version: 0~20150903+r2013-8 Space: 176976 Status: successful Version: 0~20150903+r2013-8 -------------------------------------------------------------------------------- Finished at 2024-08-04T03:06:12Z Build needed 00:02:53, 176976k disk space