sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | estscan 3.0.3-6 (amd64) Sun, 15 Sep 2024 04:03:31 +0000 | +==============================================================================+ Package: estscan Version: 3.0.3-6 Source Version: 3.0.3-6 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-6f374aca-5c64-4caa-890b-6bb4a31e68de' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup estscan_3.0.3-6 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup estscan_3.0.3-6 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/estscan-Y7NFvw/resolver-r9m62v' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/estscan_3.0.3-6.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/estscan-Y7NFvw/estscan-3.0.3' with '<>' I: NOTICE: Log filtering will replace 'build/estscan-Y7NFvw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gfortran, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), gfortran, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [627 B] Get:5 copy:/<>/apt_archive ./ Packages [659 B] Fetched 1895 B in 0s (149 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgfortran-14-dev libgfortran5 libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev groff libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgfortran-14-dev libgfortran5 libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After this operation, 122 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [888 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-4 [837 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-4 [880 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-4 [11.7 MB] Get:36 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-4 [11.8 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2 [1284 B] Get:38 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.1.0-2 [1436 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.3 MB in 0s (112 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up autopoint (0.22.5-2) ... Setting up libgfortran5:amd64 (14.2.0-4) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-4) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14 (14.2.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2) ... Setting up gfortran (4:14.1.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gfortran_4:14.1.0-2 gfortran-14_14.2.0-4 gfortran-14-x86-64-linux-gnu_14.2.0-4 gfortran-x86-64-linux-gnu_4:14.1.0-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran-14-dev_14.2.0-4 libgfortran5_14.2.0-4 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: estscan Binary: estscan Architecture: any Version: 3.0.3-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://estscan.sourceforge.net/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/estscan Vcs-Git: https://salsa.debian.org/med-team/estscan.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gfortran Package-List: estscan deb science optional arch=any Checksums-Sha1: 8af2128aaa02c50d1d3cfa75188fac038381975c 46412 estscan_3.0.3.orig.tar.gz 18c44f0c2cfd7a5b80b37b4e45850c8707132954 12984 estscan_3.0.3-6.debian.tar.xz Checksums-Sha256: 037dc8770681ed12406a789ea292462a4ce5d89b0e906a1a3340aa4debc71e2f 46412 estscan_3.0.3.orig.tar.gz 719a8477d3ee19a64e25df2a42a3800c64a04cd6064dc6ba671a17ce3b29b54f 12984 estscan_3.0.3-6.debian.tar.xz Files: c07284ad28a38050bab0c1b71bbd055a 46412 estscan_3.0.3.orig.tar.gz e881307c55d917a1654d0b5abd8e6cc8 12984 estscan_3.0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaUHkUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGdDhAAmb5BpFKWO2stQ0svvHsOCvskOhUx u2JivpJEyr/Vs9PwmW5gCDwMtFBFsX+yynIkYg1nj3oO8Fwu02KCpS9j+xHfEcAY AyZL0k6fKG1FnrMM5acfewnMCRdbtdc9e8qny9VjXAHnk8e5YWt+zBNlJ0HDSSu5 AhM/UNxPhnU4EJtnlH3c07VcladpXhWcDrEgcRQCH1vZVI98K+NW9wj6KA2XOcJF hxncyDv0d+Lt0kxaSnG+sWAN5CTiXXZh04qL9/GylD0TIftqokxet/j1mVkFDodb HZkYRJns3XfM/TFbvNDNfyjrSOFySR4J5ZAlN6Zgre+9Bg3h7rUasL9EI468O7oP 2xwS4e2+g3ABgKmiaetIW719F/l+ikgtFQwjw2AgpNEpcC0omqv1cepPTkylnpPW letUzyNTepk0jLYTI2TZcvWf2ZzaIhn8YicSReOTrGktG1q4IwPgObNHDuR/Bj12 BoOziCah87VlcteMRNcrm9vANjdCr3rOF2gsVrwPaEnb6N3SLqeFbSIS/FTup43u R5p4qcNxk/aoCermHNpvqEPCxgMQJ8FnqORp0S5D1eXBX+LTxJroYR4tTOx4zMyd OGwRErhYstnbCwUvTFAqkTeklIMJ12UQEDDslAIGsO6Wo1MAkNCJaiiLeqtEpzts EVDTDeIealY46uI= =+cXO -----END PGP SIGNATURE----- gpgv: Signature made Mon Aug 16 11:48:09 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./estscan_3.0.3-6.dsc: no acceptable signature found dpkg-source: info: extracting estscan in /<> dpkg-source: info: unpacking estscan_3.0.3.orig.tar.gz dpkg-source: info: unpacking estscan_3.0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makfile.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network estscan_3.0.3-6 perl-5.40-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network estscan_3.0.3-6 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-6f374aca-5c64-4caa-890b-6bb4a31e68de SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package estscan dpkg-buildpackage: info: source version 3.0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/<>' \rm -f *~ maskred makesmat estscan winsegshuffle *.o make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building estscan using existing ./estscan_3.0.3.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building estscan in estscan_3.0.3-6.debian.tar.xz dpkg-source: info: building estscan in estscan_3.0.3-6.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c maskred.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c makesmat.c maskred.c:124:33: warning: ‘bitValue’ is static but used in inline function ‘testBit’ which is not static 124 | { return(bitField[index >> 3] & bitValue[index & 7]); } | ^~~~~~~~ maskred.c:121:27: warning: ‘bitValue’ is static but used in inline function ‘setBit’ which is not static 121 | { bitField[index >> 3] |= bitValue[index & 7]; } | ^~~~~~~~ maskred.c: In function ‘mask_file’: maskred.c:203:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 203 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ maskred.c:210:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 210 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ maskred.c: At top level: maskred.c:161:13: warning: ‘printTuple’ defined but not used [-Wunused-function] 161 | static void printTuple(unsigned long index, int len) | ^~~~~~~~~~ makesmat.c: In function ‘count_tuples’: makesmat.c:306:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 306 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ makesmat.c:325:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 325 | fgets(buf, 1024, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -pedantic -c estscan.c estscan.c: In function ‘Compute’: estscan.c:784:38: warning: variable ‘tmpScore’ set but not used [-Wunused-but-set-variable] 784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore; | ^~~~~~~~ estscan.c:784:29: warning: variable ‘tmpPrev’ set but not used [-Wunused-but-set-variable] 784 | int iCurr, bPrev, bScore, tmpPrev, tmpScore; | ^~~~~~~ gfortran -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -fcf-protection -c winsegshuffle.f winsegshuffle.f:121:72: 121 | IF(J.GT.97.OR.J.LT.1) PAUSE | 1 Warning: Deleted feature: PAUSE statement at (1) gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o maskred maskred.o -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o makesmat makesmat.o -lm gfortran -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o winsegshuffle winsegshuffle.o -lm gcc -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o estscan estscan.o -lm make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/estscan/ debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install set -e ; \ for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/estscan/usr/bin/estscan: DWARF compression not beneficial - old size 22046 new size 22176 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/estscan/usr/bin/winsegshuffle was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'estscan' in '../estscan_3.0.3-6_amd64.deb'. dpkg-deb: building package 'estscan-dbgsym' in '../estscan-dbgsym_3.0.3-6_amd64.deb'. dpkg-genbuildinfo -O../estscan_3.0.3-6_amd64.buildinfo dpkg-genchanges -O../estscan_3.0.3-6_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T04:03:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ estscan_3.0.3-6_amd64.changes: ------------------------------ Format: 1.8 Date: Mon, 16 Aug 2021 17:16:42 +0530 Source: estscan Binary: estscan estscan-dbgsym Architecture: source amd64 Version: 3.0.3-6 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: estscan - ORF-independent detector of coding DNA sequences Changes: estscan (3.0.3-6) unstable; urgency=medium . [ Shruti Sridhar ] * Team Upload. * Add test data * Add autopkgtests * Install docs Checksums-Sha1: f927b0e9e2952612ff594632b338b36fe86ce227 1051 estscan_3.0.3-6.dsc 60feb23a2fcb0cb70fade2dad36bf251525ed1c6 12992 estscan_3.0.3-6.debian.tar.xz 3580258434200e00eb7f8437f3af3bb25f9e1747 60400 estscan-dbgsym_3.0.3-6_amd64.deb d7f66a34cba7db9e107ca0a880602a986a66beb8 5437 estscan_3.0.3-6_amd64.buildinfo 122160da57014ae050e687dc4ce6906913bc7e6a 54172 estscan_3.0.3-6_amd64.deb Checksums-Sha256: e7a10daa5f5f1334f6320c93713aa5f42334087abf43beaea30a51e6f0bb7c04 1051 estscan_3.0.3-6.dsc f91dd1409d9ba0672aec3cb984d32379fc86eafd445975930d21160917067b55 12992 estscan_3.0.3-6.debian.tar.xz 2b9676ea078964003ae0049bb94a77b22ff02a1bb6246b8e380e35610ca74b3b 60400 estscan-dbgsym_3.0.3-6_amd64.deb 6219011ed1f6ee7a7b0d580b6a01acabace5b2806be0097e8a4bdcdf2205492c 5437 estscan_3.0.3-6_amd64.buildinfo a2d46d1207969807f5c03db1c423a1dd4d545704921ffe2369136b5dc2b73a7f 54172 estscan_3.0.3-6_amd64.deb Files: 653473d121ba2a0c7f6dbf7d5eeaee8d 1051 science optional estscan_3.0.3-6.dsc 330fe6d86e58f709d2ea3dd799952ce9 12992 science optional estscan_3.0.3-6.debian.tar.xz 59218d1d44e0d74d01fcb1df8df0f8ea 60400 debug optional estscan-dbgsym_3.0.3-6_amd64.deb bb234fa05a478246fc6fcadc1e0c262b 5437 science optional estscan_3.0.3-6_amd64.buildinfo fc768d2298372e46982cb90ba5932ab7 54172 science optional estscan_3.0.3-6_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: estscan Binary: estscan estscan-dbgsym Architecture: amd64 source Version: 3.0.3-6 Checksums-Md5: 653473d121ba2a0c7f6dbf7d5eeaee8d 1051 estscan_3.0.3-6.dsc 59218d1d44e0d74d01fcb1df8df0f8ea 60400 estscan-dbgsym_3.0.3-6_amd64.deb fc768d2298372e46982cb90ba5932ab7 54172 estscan_3.0.3-6_amd64.deb Checksums-Sha1: f927b0e9e2952612ff594632b338b36fe86ce227 1051 estscan_3.0.3-6.dsc 3580258434200e00eb7f8437f3af3bb25f9e1747 60400 estscan-dbgsym_3.0.3-6_amd64.deb 122160da57014ae050e687dc4ce6906913bc7e6a 54172 estscan_3.0.3-6_amd64.deb Checksums-Sha256: e7a10daa5f5f1334f6320c93713aa5f42334087abf43beaea30a51e6f0bb7c04 1051 estscan_3.0.3-6.dsc 2b9676ea078964003ae0049bb94a77b22ff02a1bb6246b8e380e35610ca74b3b 60400 estscan-dbgsym_3.0.3-6_amd64.deb a2d46d1207969807f5c03db1c423a1dd4d545704921ffe2369136b5dc2b73a7f 54172 estscan_3.0.3-6_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 04:03:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), gfortran (= 4:14.1.0-2), gfortran-14 (= 14.2.0-4), gfortran-14-x86-64-linux-gnu (= 14.2.0-4), gfortran-x86-64-linux-gnu (= 4:14.1.0-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-4), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran-14-dev (= 14.2.0-4), libgfortran5 (= 14.2.0-4), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-4), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1629114402" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ estscan-dbgsym_3.0.3-6_amd64.deb -------------------------------- new Debian package, version 2.0. size 60400 bytes: control archive=744 bytes. 492 bytes, 12 lines control 508 bytes, 5 lines md5sums Package: estscan-dbgsym Source: estscan Version: 3.0.3-6 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 98 Depends: estscan (= 3.0.3-6) Section: debug Priority: optional Description: debug symbols for estscan Build-Ids: 3fb81f6c417d37e233da33d5d0183d02c5db1b51 5d7bfcbc96b326da1a373d981770d075a2070b21 aa833fdd6f3a5e5e69db13fe61706f002aff2b98 e1a14e65936c8442125968a6f79c7efb19f22aff drwxr-xr-x root/root 0 2021-08-16 11:46 ./ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 37240 2021-08-16 11:46 ./usr/lib/debug/.build-id/3f/b81f6c417d37e233da33d5d0183d02c5db1b51.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 10920 2021-08-16 11:46 ./usr/lib/debug/.build-id/5d/7bfcbc96b326da1a373d981770d075a2070b21.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/aa/ -rw-r--r-- root/root 12240 2021-08-16 11:46 ./usr/lib/debug/.build-id/aa/833fdd6f3a5e5e69db13fe61706f002aff2b98.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.build-id/e1/ -rw-r--r-- root/root 20320 2021-08-16 11:46 ./usr/lib/debug/.build-id/e1/a14e65936c8442125968a6f79c7efb19f22aff.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 2680 2021-08-16 11:46 ./usr/lib/debug/.dwz/x86_64-linux-gnu/estscan.debug drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan-dbgsym -> estscan estscan_3.0.3-6_amd64.deb ------------------------- new Debian package, version 2.0. size 54172 bytes: control archive=1476 bytes. 1288 bytes, 24 lines control 934 bytes, 15 lines md5sums Package: estscan Version: 3.0.3-6 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 261 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgfortran5 (>= 8), perl:any Section: science Priority: optional Homepage: http://estscan.sourceforge.net/ Description: ORF-independent detector of coding DNA sequences ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity. . ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics. drwxr-xr-x root/root 0 2021-08-16 11:46 ./ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/bin/ -rwxr-xr-x root/root 38992 2021-08-16 11:46 ./usr/bin/estscan -rwxr-xr-x root/root 25411 2021-08-16 11:46 ./usr/bin/evaluate_model -rwxr-xr-x root/root 18833 2021-08-16 11:46 ./usr/bin/extract_EST -rwxr-xr-x root/root 16560 2021-08-16 11:46 ./usr/bin/extract_UG_EST -rwxr-xr-x root/root 22760 2021-08-16 11:46 ./usr/bin/makesmat -rwxr-xr-x root/root 14568 2021-08-16 11:46 ./usr/bin/maskred -rwxr-xr-x root/root 18178 2021-08-16 11:46 ./usr/bin/prepare_data -rwxr-xr-x root/root 18664 2021-08-16 11:46 ./usr/bin/winsegshuffle drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/ -rw-r--r-- root/root 669 2021-08-16 11:46 ./usr/share/doc/estscan/README.test -rw-r--r-- root/root 750 2021-08-16 11:46 ./usr/share/doc/estscan/changelog.Debian.gz -rw-r--r-- root/root 6100 2021-08-16 11:46 ./usr/share/doc/estscan/copyright drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/doc/estscan/examples/ -rw-r--r-- root/root 59182 2021-08-16 11:46 ./usr/share/doc/estscan/examples/Dr.smat -rw-r--r-- root/root 204 2021-08-16 11:46 ./usr/share/doc/estscan/examples/sequence.fasta -rw-r--r-- root/root 381 2021-08-16 11:46 ./usr/share/doc/estscan/run-unit-test drwxr-xr-x root/root 0 2021-08-16 11:46 ./usr/share/perl5/ -rw-r--r-- root/root 8714 2006-12-19 16:01 ./usr/share/perl5/build_model_utils.pl +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1624 Build-Time: 7 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/estscan_3.0.3-6.dsc Machine Architecture: amd64 Package: estscan Package-Time: 20 Source-Version: 3.0.3-6 Space: 1624 Status: successful Version: 3.0.3-6 -------------------------------------------------------------------------------- Finished at 2024-09-15T04:03:51Z Build needed 00:00:20, 1624k disk space