sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | debian-med 3.8.1 (amd64) Sun, 15 Sep 2024 00:59:45 +0000 | +==============================================================================+ Package: debian-med Version: 3.8.1 Source Version: 3.8.1 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-ef00b5c4-57b8-443b-96c3-ffa72d4a1f34' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.8.1 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.8.1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/debian-med-gWhLm1/resolver-7Iobt7' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/debian-med_3.8.1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/debian-med-gWhLm1/debian-med-3.8.1' with '<>' I: NOTICE: Log filtering will replace 'build/debian-med-gWhLm1' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~) Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [661 B] Get:5 copy:/<>/apt_archive ./ Packages [673 B] Fetched 1943 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcom-err2 libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libgssapi-krb5-2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc libmagic1t64 libnsl2 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libtirpc-common libtirpc3t64 libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-autocommand python3-blends python3-chardet python3-debian python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-pkg-resources python3-typeguard python3-typing-extensions python3.12 python3.12-minimal sensible-utils tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc blends-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-apt-doc python3-psycopg2 python3-setuptools python3.12-venv python3.12-doc binfmt-support Recommended packages: python3-psycopg2 curl | wget | lynx libarchive-cpio-perl javascript-common krb5-locales libltdl-dev libmail-sendmail-perl lsb-release iso-codes zstd ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcom-err2 libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libgssapi-krb5-2 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmagic-mgc libmagic1t64 libnsl2 libpipeline1 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libtirpc-common libtirpc3t64 libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-autocommand python3-blends python3-chardet python3-debian python3-inflect python3-jaraco.context python3-jaraco.functools python3-minimal python3-more-itertools python3-pkg-resources python3-typeguard python3-typing-extensions python3.12 python3.12-minimal sbuild-build-depends-main-dummy sensible-utils tzdata 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 28.3 MB of archives. After this operation, 110 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.6-1 [814 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.3-1 [105 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.6-1 [2168 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.5-1+b1 [27.0 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get:13 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3 [82.7 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b2 [40.3 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.6-1 [1963 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.6-1 [669 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.5-1+b1 [9884 B] Get:21 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.5-1+b1 [27.9 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 python-apt-common all 2.9.0 [66.2 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 distro-info-data all 0.62 [6344 B] Get:53 http://deb.debian.org/debian unstable/main amd64 python3-apt amd64 2.9.0+b1 [166 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.4.0-1 [63.7 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.3.0-1 [36.5 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-1 [42.2 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:60 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 python3-debian all 0.1.49 [115 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 python3-blends all 0.7.7 [32.4 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 blends-dev all 0.7.7 [22.8 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.3 MB in 0s (158 MB/s) Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_amd64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:amd64 (3.12.6-1) ... Setting up libexpat1:amd64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 23306 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.5-1+b1_amd64.deb ... Unpacking python3-minimal (3.12.5-1+b1) ... Selecting previously unselected package media-types. 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../50-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up distro-info-data (0.62) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 15 00:59:53 UTC 2024. Universal Time is now: Sun Sep 15 00:59:53 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up python-apt-common (2.9.0) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:amd64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.5-1+b1) ... Setting up python3 (3.12.5-1+b1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.4.0-1) ... Setting up python3-jaraco.functools (4.0.2-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-apt (2.9.0+b1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-inflect (7.3.1-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-debian (0.1.49) ... Setting up python3-blends (0.7.7) ... Setting up blends-dev (0.7.7) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 blends-dev_0.7.7 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 distro-info-data_0.62 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcom-err2_1.47.1-1 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libexpat1_2.6.3-1 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libgssapi-krb5-2_1.21.3-3 libhogweed6t64_3.10-1 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_7.4.7-3 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.21.3-3 libkeyutils1_1.6.3-3 libkrb5-3_1.21.3-3 libkrb5support0_1.21.3-3 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libnsl2_1.3.0-3+b2 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libpython3-stdlib_3.12.5-1+b1 libpython3.12-minimal_3.12.6-1 libpython3.12-stdlib_3.12.6-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 python-apt-common_2.9.0 python3_3.12.5-1+b1 python3-apt_2.9.0+b1 python3-autocommand_2.2.2-3 python3-blends_0.7.7 python3-chardet_5.2.0+dfsg-1 python3-debian_0.1.49 python3-inflect_7.3.1-1 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.0.2-1 python3-minimal_3.12.5-1+b1 python3-more-itertools_10.4.0-1 python3-pkg-resources_74.1.2-2 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3.12_3.12.6-1 python3.12-minimal_3.12.6-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 tzdata_2024a-4 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (native) Source: debian-med Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting Architecture: all Version: 3.8.1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/blends-team/med Vcs-Git: https://salsa.debian.org/blends-team/med.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: blends-dev (>= 0.7.5~) Package-List: med-all deb metapackages optional arch=all med-bio deb metapackages optional arch=all med-bio-dev deb metapackages optional arch=all med-cloud deb metapackages optional arch=all med-config deb misc optional arch=all med-data deb metapackages optional arch=all med-dental deb metapackages optional arch=all med-epi deb metapackages optional arch=all med-his deb metapackages optional arch=all med-imaging deb metapackages optional arch=all med-imaging-dev deb metapackages optional arch=all med-laboratory deb metapackages optional arch=all med-oncology deb metapackages optional arch=all med-pharmacy deb metapackages optional arch=all med-physics deb metapackages optional arch=all med-practice deb metapackages optional arch=all med-psychology deb metapackages optional arch=all med-research deb metapackages optional arch=all med-statistics deb metapackages optional arch=all med-tasks deb misc optional arch=all med-tools deb metapackages optional arch=all med-typesetting deb metapackages optional arch=all Checksums-Sha1: 9da32b7486a6f3dab3fd19bfdf5b20e39f66a47b 126456 debian-med_3.8.1.tar.xz Checksums-Sha256: 5e2047554ebd7aa547ade3b9567daa4be823827b5bcd72b9f9c3289b8731b913 126456 debian-med_3.8.1.tar.xz Files: 6f2bd016b2bf6facbcab25de8338d355 126456 debian-med_3.8.1.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmRrX5kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH4iRAAizVsnRb7CQ5a5vnfvYdD8CeBUNd2PgiT c7jD/N3xT67PVYdoPPhQaUG04BqPPD2xkLqRfh9J9Ab7IPXU7Rl164vtk7OQQY0d +9mUofc9eob6ItkZApanyEaEOaAPdj0YY01mYmY45tPxFiDvk3AIlknfl2UOfsTg 7rmuvpEadXy81ucz01LEk4VUbCQrmIMAfJKqI3dfzcnneS5GxmOIM1ZPPAZCpBZH MxJioCVDcHoU0GUPsP6+d8i8HmA4Lt8K7rvpAaRcJ9g3rNF4aGCAZtleXOwA7tkt p89pz8SA7rh6wy3Mqsflo5yXXmt5cIqv78iinvTZn8spc9Qq2gi0SpqR9jGCJ6vw F9HHXqaIWTPBcb2X+SuRleawHxL9kzEdCBbH6w6SQOyvK/xFLVBnyRuWZnh1wz+Z sdJJeuJqWKMByGpGi91x1/kWYFFAI+qgb1xgbx2w+NeJ+hvH+9k+WXGCG723sbDB cSibIP8VPIcYPpMB89zku72CwV1OUPtR4yfWLesSQpr9+DwtwP1Wbi9XNB4VJiQx 9EANn2fRbThuHvbXEnuL4u9rbxphfkS+RccuKVxyxiLy0wClb/6M4mpOKPnA/cwe 4KClhD38/5/ltaXWbvVqlZIYZiNyY733XyAmzM7REjoQpwJrDUsixsQda4ZM4scM sO7bykE0bm4= =Q3lc -----END PGP SIGNATURE----- gpgv: Signature made Mon May 22 12:27:05 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./debian-med_3.8.1.dsc: no acceptable signature found dpkg-source: info: extracting debian-med in /<> dpkg-source: info: unpacking debian-med_3.8.1.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.8.1 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.8.1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-ef00b5c4-57b8-443b-96c3-ffa72d4a1f34 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot dpkg-buildpackage: info: source package debian-med dpkg-buildpackage: info: source version 3.8.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # call make clean instead of distclean make clean make[2]: Entering directory '/<>' rm -rf tmp rm -f tasks/*~ rm -rf tasksel rm -f packages.txt by_vote packages-sorted.txt rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' # hmmm, that would kill debian/control - so don't do this! # /usr/bin/make -f /usr/share/blends-dev/Makefile clean # Clear apt-get cache rm -rf tmp # Remove backup files from source tarball rm -f tasks/*~ # Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \ rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \ done # rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst # remove auto generated files for config package rm -f debian/med-config.templates debian/med-config.config \ debian/med-config.install debian/med-config.links \ debian/90med-config # remove auto generated debconf template translations rm -rf debian/po # remove possibly remaining debhelper files rm -f debian/med-*.debhelper.log dh_clean make[1]: Leaving directory '/<>' dpkg-source -b . dpkg-source: info: using source format '3.0 (native)' dpkg-source: info: building debian-med in debian-med_3.8.1.tar.xz dpkg-source: info: building debian-med in debian-med_3.8.1.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # do nothing, we just called the make install target in advance # and want to build the packages without network access make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/<>' /usr/share/blends-dev/blend-install-helper dh_install debian-med-tasks.desc usr/share/tasksel/descs make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs -A README make[1]: Leaving directory '/<>' dh_installchangelogs dh_installman dh_installdebconf dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'med-tasks' in '../med-tasks_3.8.1_all.deb'. dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.8.1_all.deb'. dpkg-deb: building package 'med-config' in '../med-config_3.8.1_all.deb'. dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.8.1_all.deb'. dpkg-deb: building package 'med-all' in '../med-all_3.8.1_all.deb'. dpkg-deb: building package 'med-bio' in '../med-bio_3.8.1_all.deb'. dpkg-deb: building package 'med-oncology' in '../med-oncology_3.8.1_all.deb'. dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.8.1_all.deb'. dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.8.1_all.deb'. dpkg-deb: building package 'med-cloud' in '../med-cloud_3.8.1_all.deb'. dpkg-deb: building package 'med-physics' in '../med-physics_3.8.1_all.deb'. dpkg-deb: building package 'med-data' in '../med-data_3.8.1_all.deb'. dpkg-deb: building package 'med-dental' in '../med-dental_3.8.1_all.deb'. dpkg-deb: building package 'med-practice' in '../med-practice_3.8.1_all.deb'. dpkg-deb: building package 'med-epi' in '../med-epi_3.8.1_all.deb'. dpkg-deb: building package 'med-his' in '../med-his_3.8.1_all.deb'. dpkg-deb: building package 'med-psychology' in '../med-psychology_3.8.1_all.deb'. dpkg-deb: building package 'med-research' in '../med-research_3.8.1_all.deb'. dpkg-deb: building package 'med-imaging' in '../med-imaging_3.8.1_all.deb'. dpkg-deb: building package 'med-statistics' in '../med-statistics_3.8.1_all.deb'. dpkg-deb: building package 'med-tools' in '../med-tools_3.8.1_all.deb'. dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.8.1_all.deb'. dpkg-genbuildinfo -O../debian-med_3.8.1_amd64.buildinfo dpkg-genchanges -O../debian-med_3.8.1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload; Debian-native package (full source is included) -------------------------------------------------------------------------------- Build finished at 2024-09-15T01:00:07Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ debian-med_3.8.1_amd64.changes: ------------------------------- Format: 1.8 Date: Mon, 22 May 2023 14:04:33 +0200 Source: debian-med Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting Architecture: source all Version: 3.8.1 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-research - Debian Med packages for medical research med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (3.8.1) unstable; urgency=medium . * Standards-Version: 4.6.2 * Update dependencies to fit Bookworm release status . * start of automatic changelog entry * . * Changes in metapackage dependencies -med-bio-dev added: Recommends: libwfa2-dev Checksums-Sha1: 295783b97786eda34ceb461c50aae48d7c0fcb70 2029 debian-med_3.8.1.dsc 9da32b7486a6f3dab3fd19bfdf5b20e39f66a47b 126456 debian-med_3.8.1.tar.xz 2913007bf847e2007613571a063c17d72a45c9c2 11587 debian-med_3.8.1_amd64.buildinfo 3e393a4cb8f6c0ca618f0d983d6cf1449dfc021e 6724 med-all_3.8.1_all.deb 33b029e141f1870fdbe856ff716236065073e836 11184 med-bio-dev_3.8.1_all.deb bf7ea21ef70c7b26c65cfdc37ac3b19b462fe884 13992 med-bio_3.8.1_all.deb 25773152ceabf3f8772eb6c291bf1a9c593f4ef4 9468 med-cloud_3.8.1_all.deb 2189550cc4908779028a7f33ef3f12bde24ef4eb 11112 med-config_3.8.1_all.deb 139bf8e7fd0f2479bf70773b188e5f4efa09d40e 8640 med-data_3.8.1_all.deb 411d6903a8a5f12968ea0bba95ce32a6e7210962 8628 med-dental_3.8.1_all.deb e458e468d15a32d26d6929d59ee65c40a75574f0 9152 med-epi_3.8.1_all.deb b911bde00431c0354971d0fb7207edabeef32091 8788 med-his_3.8.1_all.deb 0400db7af0cf8cba3c8dc4df3b7cf5ba5eb95cdf 9036 med-imaging-dev_3.8.1_all.deb 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Architecture: all source Version: 3.8.1 Checksums-Md5: aed9220e3c65061451947a24fd233b05 2029 debian-med_3.8.1.dsc e28ecdb4cb45176ac709dcf78cd15a82 6724 med-all_3.8.1_all.deb f2fc383ccbd698f22d4f586c391af6c2 11184 med-bio-dev_3.8.1_all.deb 9ef705eaecd9f44e65c51fa0278391e6 13992 med-bio_3.8.1_all.deb 1b1e7567267342f1af3de96e162408af 9468 med-cloud_3.8.1_all.deb 16945b4a39656dc51dcc1a1666ecfc93 11112 med-config_3.8.1_all.deb 45f0b782a89ccba67cd0b1b199db7bb6 8640 med-data_3.8.1_all.deb 8556397645e907852d154585215a3b9e 8628 med-dental_3.8.1_all.deb f3d1db5180f44757fa9dbf9bf6915090 9152 med-epi_3.8.1_all.deb 7de4141ef8cd50ee6851868952a29f96 8788 med-his_3.8.1_all.deb c5421a895308e5207ab095ac3707e7b1 9036 med-imaging-dev_3.8.1_all.deb 54c64e9c5403b5b4e9fb36754edada6c 9560 med-imaging_3.8.1_all.deb 2517f5d110c8aa80e5cc4209e6243ac2 8648 med-laboratory_3.8.1_all.deb 2952f608689a0c183f50974c1bc16b2b 8612 med-oncology_3.8.1_all.deb a06244e1806039d16bf0224c62d88980 8636 med-pharmacy_3.8.1_all.deb 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966a188202ab0e1c89b1d90a1e0174dcfc055f62d50121c65e70626445a5137c 8592 med-research_3.8.1_all.deb a3105df0ef15eb0e8cd8805c2a946ab4e93151518ba794c9419cc226087c61b7 8692 med-statistics_3.8.1_all.deb b49580053b3f39df3fc1d49e622517d73d1382daeb86a3898302b924fe0e09ce 8340 med-tasks_3.8.1_all.deb bbcae8b63a75c87708df61474784862457689930903db417326284361f202220 8748 med-tools_3.8.1_all.deb 3b69d6fcd920f56c7d5caa70ebb7e402e36c47a3b51edaff7b83633cb07a9407 8672 med-typesetting_3.8.1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 15 Sep 2024 01:00:07 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), blends-dev (= 0.7.7), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), distro-info-data (= 0.62), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libapt-pkg6.0t64 (= 2.9.8), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-4), libcom-err2 (= 1.47.1-1), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libexpat1 (= 2.6.3-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgcrypt20 (= 1.11.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgpg-error0 (= 1.50-3), libgprofng0 (= 2.43.1-4), libgssapi-krb5-2 (= 1.21.3-3), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.4.7-3), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.21.3-3), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.21.3-3), libkrb5support0 (= 1.21.3-3), liblsan0 (= 14.2.0-4), liblz4-1 (= 1.9.4-3), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libnsl2 (= 1.3.0-3+b2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libpython3-stdlib (= 3.12.5-1+b1), libpython3.12-minimal (= 3.12.6-1), libpython3.12-stdlib (= 3.12.6-1), libquadmath0 (= 14.2.0-4), libreadline8t64 (= 8.2-5), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libsqlite3-0 (= 3.46.1-1), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtirpc-common (= 1.3.4+ds-1.3), libtirpc3t64 (= 1.3.4+ds-1.3), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), media-types (= 10.1.0), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), python-apt-common (= 2.9.0), python3 (= 3.12.5-1+b1), python3-apt (= 2.9.0+b1), python3-autocommand (= 2.2.2-3), python3-blends (= 0.7.7), python3-chardet (= 5.2.0+dfsg-1), python3-debian (= 0.1.49), python3-inflect (= 7.3.1-1), python3-jaraco.context (= 6.0.0-1), python3-jaraco.functools (= 4.0.2-1), python3-minimal (= 3.12.5-1+b1), python3-more-itertools (= 10.4.0-1), python3-pkg-resources (= 74.1.2-2), python3-typeguard (= 4.3.0-1), python3-typing-extensions (= 4.12.2-2), python3.12 (= 3.12.6-1), python3.12-minimal (= 3.12.6-1), readline-common (= 8.2-5), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), tzdata (= 2024a-4), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1684757073" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ med-all_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 6724 bytes: control archive=716 bytes. 654 bytes, 13 lines control 198 bytes, 3 lines md5sums Package: med-all Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 13 Recommends: med-bio, med-bio-dev, med-statistics Suggests: med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-tools, med-typesetting Section: metapackages Priority: optional Description: Default selection of tasks for Debian Med This package is part of the Debian Med Pure Blend and installs all tasks for a default installation of this blend. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-all/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/README -rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-all/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/copyright med-bio-dev_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 11184 bytes: control archive=4440 bytes. 8077 bytes, 14 lines control 426 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio-dev Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 32 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread, goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev, libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl, libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiococoa-dev, libbiojava-java, libbiojava4-java, libbiojava6-java, libbioparser-dev, libblasr-dev, libbpp-core-dev, libbpp-phyl-dev, libbpp-phyl-omics-dev, libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev, libbpp-seq-dev, libbpp-seq-omics-dev, libcdk-java, libchado-perl, libcifpp-dev, libconsensuscore-dev, libdivsufsort-dev, libedlib-dev, libfast5-dev, libfastahack-dev, libffindex0-dev, libfml-dev, libgatbcore-dev, libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl, libgenome-perl, libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl, libhdf5-dev, libhmsbeagle-dev, libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java, libjloda-java, libkmer-dev, libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev, libncbi6-dev, libncl-dev, libngs-java, libnhgri-blastall-perl, libopenmm-dev, libopenms-dev, libpal-java, libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev, libpbseq-dev, libpdb-redo-dev, libpll-dev, libpwiz-dev, libqes-dev, librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java, librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast0-dev, librostlab3-dev, libsbml5-dev, libseqan2-dev, libseqan3-dev, libseqlib-dev, libslow5-dev, libsmithwaterman-dev, libsnp-sites1-dev, libsort-key-top-perl, libspoa-dev, libsrf-dev, libssm-dev, libssu-dev, libssw-dev, libssw-java, libstaden-read-dev, libstatgen-dev, libswiss-perl, libtabixpp-dev, libthread-pool-dev, libvcflib-dev, libvibrant6-dev, libwfa2-dev, libzerg-perl, libzerg0-dev, mcl, nim-hts-dev, nim-kexpr-dev, nim-lapper-dev, ont-fast5-api, pyfai, python3-airr, python3-anndata, python3-bcbio-gff, python3-bioframe, python3-biom-format, python3-biomaj3, python3-biopython, python3-biotools, python3-bx, python3-cgecore, python3-cigar, python3-cobra, python3-cogent3, python3-cooler, python3-corepywrap, python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-dendropy, python3-dnaio, python3-ete3, python3-fast5, python3-freecontact, python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq, python3-intervaltree-bio, python3-kineticstools, python3-loompy, python3-mirtop, python3-nanoget, python3-ngs, python3-pairix, python3-pangolearn, python3-parasail, python3-pbcommand, python3-pbconsensuscore, python3-pbcore, python3-peptidebuilder, python3-presto, python3-propka, python3-py2bit, python3-pyabpoa, python3-pyani, python3-pybedtools, python3-pybel, python3-pybigwig, python3-pyfaidx, python3-pyfastx, python3-pymummer, python3-pyranges, python3-pysam, python3-pyspoa, python3-pyvcf, python3-rdkit, python3-ruffus, python3-screed, python3-shasta, python3-skbio, python3-slow5, python3-sqt, python3-streamz, python3-tinyalign, python3-torch, python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase, r-cran-boolnet, r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast, r-cran-genetics, r-cran-gprofiler2, r-cran-haplo.stats, r-cran-metamix, r-cran-phangorn, r-cran-pheatmap, r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml, r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake, toil Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev, cwlformat, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev, libbiosoup-dev, libbtllib-dev, libcapsule-maven-nextflow-java, libconcurrentqueue-dev, libdisorder-dev, libfast-perl, libforester-java, libfreecontact-dev, libfreecontact-doc, libfreecontact-perl, libgatk-bwamem-java, libgatk-bwamem-jni, libgatk-fermilite-java, libgatk-fermilite-jni, libgatk-native-bindings-java, libgenomicsdb-dev, libgenomicsdb-java, libicb-utils-java, libmaus2-dev, libmilib-java, libminimap-dev, libmmblib-dev, libmodhmm-dev, libnexml-java, libngs-sdk-dev, libpbcopper-dev, libqcpp-dev, librelion-dev, libroadrunner-dev, librostlab-blast-doc, librostlab-doc, libsavvy-dev, libsuma-dev, libsvmloc-dev, libswarm2-dev, libterraces-dev, libtfbs-perl, libvbz-hdf-plugin-dev, libxxsds-dynamic-dev, octace-bioinfo, python-biopython-doc, python3-alignlib, python3-bcbio, python3-bel-resources, python3-bioblend, python3-biopython-sql, python3-cgelib, python3-compclust, python3-conda-package-streaming, python3-consensuscore2, python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy, python3-misopy, python3-ncls, python3-networkx, python3-pycosat, python3-pyflow, python3-roadrunner, python3-scanpy, python3-seqcluster, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun, q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser, r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics, r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap, r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz, r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage, r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation, r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation, r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight, r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools, r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv, r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc, r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook, r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp, ruby-rgfa, vdjtools Section: metapackages Priority: optional Description: Debian Med packages for development of bioinformatics applications This metapackage will install Debian packages which might be helpful for development of applications for biological research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio-dev -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 371 2023-05-22 12:04 ./usr/share/blends/med/menu/libncbi6-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio-dev.1.gz -> med-config.1.gz med-bio_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 13992 bytes: control archive=6604 bytes. 11319 bytes, 14 lines control 620 bytes, 9 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 43 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abacas, abpoa, abyss, acedb-other, adapterremoval, adun-core, aegean, aevol, alien-hunter, alter-sequence-alignment, altree, amap-align, ampliconnoise, andi, any2fasta, aragorn, arden, ariba, art-nextgen-simulation-tools, artemis, artfastqgenerator, assembly-stats, assemblytics, atac, ataqv, atropos, augur, augustus, autodock, autodock-vina, autogrid, avogadro, axe-demultiplexer, baitfisher, bali-phy, ballview, bamclipper, bamkit, bamtools, bandage, barrnap, bbmap, bcalm, bcftools, beads, beagle, beast-mcmc, beast2-mcmc, bedops, bedtools, belvu, berkeley-express, bio-eagle, bio-rainbow, bio-tradis, bio-vcf, bioawk, biobambam2, biosyntax, bitseq, blasr, blixem, bolt-lmm, bowtie, bowtie2, boxshade, bppphyview, bppsuite, brig, btllib-tools, busco, bustools, bwa, canu, cassiopee, cat-bat, cct, cd-hit, cdbfasta, centrifuge, cgview, changeo, chimeraslayer, chromhmm, chromimpute, cif-tools, circlator, circos, clearcut, clonalframe, clonalframeml, clonalorigin, clustalo, clustalw, clustalx, cnvkit, codonw, comet-ms, concavity, conservation-code, covtobed, crac, csb, cutadapt, cutesv, daligner, damapper, datamash, dawg, dazzdb, delly, density-fitness, dextractor, dialign, dialign-tx, diamond-aligner, discosnp, disulfinder, dnaclust, dnarrange, dotter, drop-seq-tools, dssp, dwgsim, e-mem, ea-utils, ecopcr, edtsurf, eigensoft, elph, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, emmax, estscan, examl, exonerate, fasta3, fastahack, fastani, fastaq, fastdnaml, fastlink, fastml, fastp, fastq-pair, fastqc, fastqtl, fasttree, ffindex, figtree, filtlong, fitgcp, flash, flexbar, flye, fml-asm, freebayes, freecontact, fsa, fsm-lite, gamgi, garli, garlic, gasic, gatb-core, gbrowse, gdpc, gemma, genometester, genomethreader, genometools, genomicsdb-tools, gentle, gff2aplot, gff2ps, gffread, ggd-utils, ghemical, ghmm, glam2, gmap, grabix, graphlan, grinder, gromacs, gsort, gubbins, gwama, harvest-tools, hhsuite, hilive, hinge, hisat2, hmmer, hmmer2, hyphy-mpi | hyphy-pt, idba, igblast, igor, igv, indelible, infernal, insilicoseq, ipig, iqtree, iva, jaligner, jalview, jellyfish, jellyfish1, jmodeltest, jmol, kalign, kallisto, kaptive, khmer, kineticstools, king-probe, kissplice, kleborate, kma, kmc, kmer, kmerresistance, kraken, kraken2, lagan, lamarc, lamassemble, lambda-align, lambda-align2, last-align, lastz, leaff, lefse, libpwiz-tools, librg-utils-perl, libvcflib-tools, lighter, logol, loki, ltrsift, lucy, lumpy-sv, macs, macsyfinder, maffilter, mafft, malt, mapdamage, mapsembler2, maq, maqview, mash, massxpert, mauve-aligner, mcaller, mecat2, megadepth, megahit, megan-ce, melting, meryl, metabat, metaphlan, metastudent, mhap, microbegps, microbiomeutil, mindthegap, minexpert2, minia, miniasm, minimac4, minimap, minimap2, mipe, mira-assembler, mirtop, mlv-smile, mmb, mmseqs2, mosdepth, mothur, mptp, mrbayes, multiqc, mummer, murasaki | murasaki-mpi, muscle, muscle3, mustang, nanofilt, nanolyse, nanook, nanopolish, nanostat, nanosv, nast-ier, ncbi-acc-download, ncbi-blast+, ncbi-blast+-legacy, ncbi-entrez-direct, ncbi-epcr, ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncl-tools, ncoils, neobio, ngmlr, njplot, norsnet, norsp, ntcard, nxtrim, obitools, openms, optimir, pal2nal, paleomix, paml, paraclu, parasail, parsinsert, parsnp, patman, pbdagcon, pbhoney, pbjelly, pbsim, pbsuite, pdb2pqr, perlprimer, perm, pftools, phast, phipack, phybin, phylip, phylonium, phyml, physamp, phyutility, phyx, picard-tools, picopore, pigx-rnaseq, piler, pilercr, pilon, pinfish, pique, pirs, pizzly, placnet, plasmidid, plasmidomics, plasmidseeker, plast, plink, plink1.9, plink2, plip, poa, populations, porechop, poretools, prank, predictnls, presto, prime-phylo, primer3, prinseq-lite, proalign, probabel, probalign, probcons, proda, prodigal, profbval, profisis, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net, profphd-utils, proftmb, progressivemauve, prokka, proteinortho, prottest, provean, pscan-chip, pscan-tfbs, psortb, pullseq, pycoqc, pycorrfit, pyensembl, pyfastx, pymol, pyscanfcs, python3-biomaj3-daemon, python3-cogent3, python3-emperor, python3-geneimpacts, python3-gffutils, python3-pairtools, python3-pybedtools, python3-sqt, python3-treetime, pyvcf, qcat, qcumber, qiime, qtltools, quicktree, quorum, qutemol, r-bioc-annotate, r-bioc-biostrings, r-bioc-cner, r-bioc-cummerbund, r-bioc-deseq2, r-bioc-ebseq, r-bioc-edger, r-bioc-genefilter, r-bioc-geoquery, r-bioc-hilbertvis, r-bioc-htsfilter, r-bioc-impute, r-bioc-limma, r-bioc-megadepth, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-mutationalpatterns, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-rtracklayer, r-bioc-scater, r-bioc-tfbstools, r-cran-adegenet, r-cran-adephylo, r-cran-alakazam, r-cran-ape, r-cran-bio3d, r-cran-distory, r-cran-genabel, r-cran-kaos, r-cran-metamix, r-cran-phangorn, r-cran-phytools, r-cran-pscbs, r-cran-qtl, r-cran-rotl, r-cran-samr, r-cran-sdmtools, r-cran-seqinr, r-cran-seurat, r-cran-shazam, r-cran-spp, r-cran-tcr, r-cran-tigger, r-cran-treescape, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, r-cran-wgcna, r-other-ascat, r-other-mott-happy.hbrem, r-other-rajewsky-dropbead, racon, radiant, ragout, rambo-k, rampler, rapmap, rasmol, raster3d, rate4site, raxml, ray, rdp-alignment, rdp-classifier, rdp-readseq, readseq, readucks, reapr, recan, relion, relion-gui, repeatmasker-recon, reprof, resfinder, rna-star, rnahybrid, roary, rockhopper, roguenarok, rsem, rtax, runcircos-gui, saint, salmid, salmon, sambamba, samblaster, samclip, samtools, savvy-util, scoary, scrappie, scrm, scythe, seaview, seer, segemehl, seqan-apps, seqan-needle, seqan-raptor, seqkit, seqmagick, seqprep, seqsero, seqtk, sga, shasta, shovill, sibelia, sibsim4, sickle, sigma-align, sim4, sim4db, simka, simkamin, ska, skesa, skewer, smalt, smithwaterman, smrtanalysis, snap, snap-aligner, sniffles, snp-sites, snpeff, snpomatic, snpsift, soapaligner, soapdenovo, soapdenovo2, soapsnp, sortmerna, spaced, spades, spaln, spoa, sprai, spread-phy, squizz, sra-toolkit, srst2, ssake, sspace, ssw-align, stacks, staden, staden-io-lib-utils, stringtie, subread, suitename, sumaclust, sumatra, sumtrees, surankco, surpyvor, survivor, svim, swarm, sweed, t-coffee, tabix, tantan, terraphast, theseus, thesias, tiddit, tigr-glimmer, tm-align, tnseq-transit, toil, tombo, tophat-recondition, topp, toppred, tortoize, trace2dbest, tracetuner, transdecoder, transrate-tools, transtermhp, tree-puzzle | tree-ppuzzle, treeview, treeviewx, trf, trim-galore, trimmomatic, tvc, twopaco, uc-echo, umap-learn, umis, uncalled, unicycler, unikmer, varna, vcfanno, vcftools, velvet | velvet-long, velvetoptimiser, virulencefinder, vmatch, vsearch, vt, wham-align, wigeon, wise, xpore, yaha, yanagiba, yanosim Suggests: acacia, adun.app, agat, amos-assembler, amoscmp, anfo, annovar, apollo, arachne, arb, arvados, asap, axparafit, axpcoords, bagpipe, bambus, bax2bam, bcbio, biceps, big-blast, bigsdb, bismark, blat, blimps-utils, blobology, braker, btk-core, cactus, caftools, card-rgi, catfishq, cdna-db, cellprofiler, cinema, cluster3, cmap, conda-package-handling, condetri, contrafold, contralign, coot, copycat, covpipe, crossbow, crux-toolkit, cufflinks, cytoscape, dascrubber, dazzle, deepbinner, deepnano, dendroscope, diann, dnapi, e-hive, ecell, embassy-phylip, emboss-explorer, ensembl, ensembl-vep, epigrass, estferret, euler-sr, euler2, exabayes, exalt, excavator, ffp, fieldbioinformatics, figaro, flappie, forester, forge, galaxy, gatk, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gerp++, getdata, glimmerhmm, gmv, gramalign, graphbin, graphmap2, haploview, hawkeye, htqc, hts-nim-tools, idefix, idseq-bench, igdiscover, illustrate, inspect, jbrowse, jigsaw, kempbasu, libhdf5-dev, libhnswlib-dev, lofreq, mach-haplotyper, mage2tab, maker2, manta, marginphase, martj, maude, maxd, medaka, meme, mesquite, metabit, metaeuk, metarep, metastudent-data, metastudent-data-2, migrate, minimus, mirbase, modeller, molekel, mosaik-aligner, mpsqed, mrs, msatfinder, mugsy, mummergpu, mview, nano-snakemake, nanocall, nanocomp, nanoplot, ncbi-magicblast, nextsv, ngila, ngsqctoolkit, nw-align, oases, obo-edit, oligoarrayaux, omegamap, oncofuse, operondb, optitype, paipline, pangolin, partigene, partitionfinder, patristic, pcma, pfaat, phagefinder, phpphylotree, phylographer, phylophlan, phyloviz-core, phylowin, pigx-scrnaseq, pipasic, plato, pomoxis, pplacer, profit, profphd, prot4est, psipred, pssh2, pufferfish, purple, pyrophosphate-tools, python3-alignlib, python3-anndata, python3-cgecore, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-htseq, python3-intake, python3-loompy, python3-nanoget, python3-nanomath, python3-ncls, python3-orange, python3-py2bit, python3-pybel, python3-pychopper, python3-pyfaidx, python3-pyflow, python3-pyranges, python3-pyrle, python3-pysam, python3-tinyalign, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-taxa, q2-types, q2-vsearch, q2cli, q2templates, qtlcart, qtlreaper, qualimap, quast, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-beachmat, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-bitseq, r-bioc-ctc, r-bioc-dnacopy, r-bioc-ensembldb, r-bioc-experimenthub, r-bioc-geneplotter, r-bioc-genomicalignments, r-bioc-genomicfiles, r-bioc-genomicranges, r-bioc-go.db, r-bioc-grohmm, r-bioc-gviz, r-bioc-isoformswitchanalyzer, r-bioc-mofa2, r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, r-bioc-qusage, r-bioc-savr, r-bioc-singlecellexperiment, r-bioc-structuralvariantannotation, r-bioc-tximport, r-cran-amap, r-cran-biwt, r-cran-boolnet, r-cran-corrplot, r-cran-drinsight, r-cran-dynamictreecut, r-cran-epir, r-cran-fitdistrplus, r-cran-forecast, r-cran-gprofiler2, r-cran-minerva, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pheatmap, r-cran-qqman, r-cran-rcpphnsw, r-cran-rentrez, r-cran-sctransform, r-other-apmswapp, r-other-fastbaps, raccoon, raxml-ng, rbs-finder, relion-cuda, relion-gui-cuda, repeatmasker, resfinder-db, roadtrips, roche454ace2caf, rosa, rose, rsat, sailfish, sap, science-workflow, sepp, seq-gen, seq-seq-pan, seqcluster, seqwish, sift, signalalign, sina, sistr, situs, snippy, solvate, sourmash, sparta, splitstree, ssaha, strap, strap-base, strelka, tab2mage, tacg, tandem-genotypes, taverna, taxinspector, tetra, tide, tigr-glimmer-mg, tipp, tn-seqexplorer, tophat, treebuilder3d, trinityrnaseq, tripal, trnascan-se, twain, ufasta, ugene, umap, unc-fish, uniprime, varmatch, varscan, vdjtools, vg, vienna-rna, viewmol, vmd, x-tandem-pipeline, zodiac-zeden Section: metapackages Priority: optional Description: Debian Med bioinformatics packages This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 2599 2023-05-22 12:04 ./usr/share/blends/med/menu/blast2 -rw-r--r-- root/root 4032 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-bin -rw-r--r-- root/root 1220 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-x11 drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 89 2023-05-22 12:04 ./usr/share/lintian/overrides/med-bio drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio.1.gz -> med-config.1.gz med-cloud_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 9468 bytes: control archive=2896 bytes. 2175 bytes, 16 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-cloud Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Section: metapackages Priority: optional Description: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-cloud -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/cloud drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-cloud/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-cloud/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-cloud/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-cloud.1.gz -> med-config.1.gz med-config_3.8.1_all.deb ------------------------ new Debian package, version 2.0. size 11112 bytes: control archive=3408 bytes. 87 bytes, 3 lines conffiles 1416 bytes, 54 lines * config #!/bin/sh 1591 bytes, 40 lines control 396 bytes, 6 lines md5sums 1355 bytes, 46 lines * postinst #!/bin/sh 212 bytes, 8 lines * postrm #!/bin/sh 2717 bytes, 48 lines templates Package: med-config Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 40 Depends: adduser, debconf (>= 0.5) | debconf-2.0, menu, blends-common (>= 0.6.15) Conflicts: med-common Replaces: med-common Provides: med-common Section: misc Priority: optional Description: Debian Med general config package This package provides the basic infrastructure of all metapackages assembled by the Debian Med team. . This metapackage provides common features shared between the different metapackages of the project. Moreover it introduces a method to handle a 'med' system users group using debconf. . The Debian Med Project include metapackages for different tasks, which are: * applications for microbiological research and support for development of biological applications * cloud computing in microbiological research * drug databases * dental surgery practice * epidemiology and medical statistics * image processing and support for imaging application development * pharmacological research * radiation oncology, diagnostic imaging and related fields * medical practice * psychological research and practice * rehabilitation * typesetting and publishing * miscellaneous tools . Each task is represented by a metapackage. Metapackages do not contain executable programs, but rather dependencies from other packages. This way you will conveniently get all free medical software which is available for Debian by simply installing the relevant metapackage drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/apt.conf.d/ -rw-r--r-- root/root 255 2023-05-22 12:04 ./etc/apt/apt.conf.d/90med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/med/ -rw-r--r-- root/root 260 2023-05-22 12:04 ./etc/blends/med/med.conf drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/profile.d/ -rw-r--r-- root/root 905 2023-05-22 12:04 ./etc/profile.d/debian-med.sh drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ -rwxr-xr-x root/root 186 2023-05-22 12:04 ./usr/bin/med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/med-task-files -> ../../share/blends/blend-task-lister drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-config/ -rw-r--r-- root/root 311 2023-05-22 12:04 ./usr/share/doc/med-config/NEWS.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/README -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-config/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ -rw-r--r-- root/root 328 2023-05-22 12:04 ./usr/share/man/man1/med-config.1.gz med-data_3.8.1_all.deb ---------------------- new Debian package, version 2.0. size 8640 bytes: control archive=2064 bytes. 534 bytes, 15 lines control 338 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-data Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: python3-hl7 Suggests: drugref.org, freediams, freemedforms-freedata, oscar Section: metapackages Priority: optional Description: Debian Med drug databases This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-data -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/data drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-data/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-data/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-data/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-data.1.gz -> med-config.1.gz med-dental_3.8.1_all.deb ------------------------ new Debian package, version 2.0. size 8628 bytes: control archive=2056 bytes. 513 bytes, 14 lines control 348 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-dental Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: entangle, imagetooth Suggests: openmolar Section: metapackages Priority: optional Description: Debian Med packages related to dental practice This metapackage contains dependencies for a collection of software which might be helpful for dentists to manage their practice. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-dental -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 7 2023-05-22 12:04 ./usr/share/blends/tasks/med/dental drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-dental/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-dental/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-dental/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-dental.1.gz -> med-config.1.gz med-epi_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 9152 bytes: control archive=2404 bytes. 1139 bytes, 17 lines control 403 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-epi Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 32 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: python3-seirsplus, python3-torch, python3-treetime, r-cran-covid19us, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epiestim, r-cran-epir, r-cran-epitools, r-cran-incidence, r-cran-kernelheaping, r-cran-lexrankr, r-cran-prevalence, r-cran-seroincidence, r-cran-sf, r-cran-sjplot, r-cran-surveillance Suggests: chime, epifire, epigrass, netepi-analysis, netepi-collection, python3-epimodels, r-cran-cmprsk, r-cran-covid19, r-cran-msm, repast, shiny-server, ushahidi Section: metapackages Priority: optional Description: Debian Med epidemiology related packages This metapackage will install tools that are useful in epidemiological research. Several packages making use of the GNU R data language for statistical investigation. It might be a good idea to read the paper "A short introduction to R for Epidemiology" at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-epi -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/epi drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-epi/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-epi/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-epi/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 232 2023-05-22 12:04 ./usr/share/lintian/overrides/med-epi drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-epi.1.gz -> med-config.1.gz med-his_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 8788 bytes: control archive=2204 bytes. 799 bytes, 17 lines control 333 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-his Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: fis-gtm, orthanc-wsi Suggests: care2x, ewd-920, hkma-cms, ipath, openeyes, openmaxims, openmrs, oscar-mcmaster, patientos, tryton-modules-health, vista-foia, world-vista Section: metapackages Priority: optional Description: Debian Med suggestions for Hospital Information Systems This metapackage contains dependencies for software and that could be useful ro run a Hospital Information System. While there is continuous work going on to package a ready to install system currently only preconditions are finished but hopefully helpful in hospitals anyway. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-his -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 29 2023-05-22 12:04 ./usr/share/blends/tasks/med/his drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-his/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-his/README.Debian -rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-his/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-his.1.gz -> med-config.1.gz med-imaging-dev_3.8.1_all.deb ----------------------------- new Debian package, version 2.0. size 9036 bytes: control archive=2456 bytes. 1612 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging-dev Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: cimg-dev, ctn-dev, gmic, libbart-dev, libbiosig-dev, libcifti-dev, libedf-dev, libgdf-dev, libgiftiio-dev, libinsighttoolkit5-dev, libismrmrd-dev, libmaxflow-dev, libmdc2-dev, libmia-2.4-dev, libmialm-dev, libmiaviewit-dev, libminc-dev, libnifti2-dev, libodil-dev, libopencv-dev, libopenigtlink-dev, libopenslide-dev, libpapyrus3-dev, libsight-dev, libteem-dev, libvigraimpex-dev, libvistaio-dev, libvolpack1-dev, libvtk-dicom-dev, libvtk9-dev, libxdf-dev, octave-bart, octave-dicom, octave-gdf, odin, python3-biosig, python3-bioxtasraw, python3-brian, python3-dcmstack, python3-dipy, python3-gdcm, python3-imageio, python3-mia, python3-mne, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-openslide, python3-pydicom, python3-pyxnat, python3-torchvision, python3-vigra, r-cran-rniftilib Suggests: emokit, libbio-formats-java, libcamitk-dev, libcamp-dev, libctk-dev, libeegdev-dev, libfreeimage-dev, libgdcm2-dev, libics-dev, liblimereg-dev, libmni-perllib-perl, libnifti-doc, libopenmeeg-dev, libopenslide-java, libvia-dev, libvmtk-dev, libxdffileio-dev, python-vmtk, tifffile Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages development This metapackage will install Debian packages which might be useful for developing applications for medical image processing and visualization. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging-dev -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging-dev.1.gz -> med-config.1.gz med-imaging_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 9560 bytes: control archive=2984 bytes. 2522 bytes, 22 lines control 353 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: aeskulap, amide, bart, bart-view, biosig-tools, ctn, ctsim, dcm2niix, dcmtk, dicom3tools, dicomnifti, dicomscope, gdf-tools, gwyddion, heudiconv, imagej, invesalius, ismrmrd-tools, king, libgdcm-tools, medcon, mia-tools, mia-viewit, mialmpick, minc-tools, mriconvert, mricron, mrtrix3, nifti-bin, odil, odin, openslide-tools, orthanc, orthanc-wsi, pixelmed-apps, plastimatch, python3-dipy, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-pydicom, python3-pyxid, python3-surfer, sigviewer, teem-apps, tifffile, vrrender, vtk-dicom-tools, xmedcon Suggests: afni, ants, bart-cuda, bioimagesuite, bioimagexd, blox, brainvisa, camitk-imp, caret, cdmedicpacs, cellprofiler, cmtk, connectomeviewer, conquest-common, conquest-dbase, conquest-mysql, conquest-postgres, conquest-sqlite, crea, dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, ginkgocadx, hid, illustrate, imagemagick, imagevis3d, imview, incf-nidash-oneclick-clients, insightapplications, isis, itksnap, jemris, jist, kradview, libdcm4che-java, lipsia, maris, mayam, medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net, openelectrophy, openmeeg-tools, opensourcepacs, openwalnut-qt4, orthanc-dicomweb, orthanc-gdcm, orthanc-imagej, orthanc-mysql, orthanc-neuro, orthanc-postgresql, orthanc-webviewer, paraview, piano, pngquant, pymeg, science-workflow, slicer, sofa-apps, stabilitycalc, stir, tempo, trimage, via-bin, visit, vmtk, voxbo, xnat Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages This metapackage will install Debian packages which might be useful in medical image processing and visualization. . On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging.1.gz -> med-config.1.gz med-laboratory_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8648 bytes: control archive=2064 bytes. 521 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-laboratory Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: opencfu, orthanc-wsi Suggests: catissuesuite, openelis, openfreezer Section: metapackages Priority: optional Description: Debian Med suggestions for medical laboratories This metapackage contains dependencies for software and that could be useful ro run a medical laboratory. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-laboratory -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/laboratory drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-laboratory/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README.Debian -rw-r--r-- root/root 4903 2023-05-22 12:04 ./usr/share/doc/med-laboratory/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-laboratory.1.gz -> med-config.1.gz med-oncology_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8612 bytes: control archive=2040 bytes. 479 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-oncology Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: orthanc-wsi, simrisc Suggests: planunc, python3-dicompylercore, uw-prism Section: metapackages Priority: optional Description: Debian Med packages for oncology This metapackage will install tools that are useful for radiation oncology. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-oncology -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/oncology drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-oncology/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-oncology/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-oncology/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-oncology.1.gz -> med-config.1.gz med-pharmacy_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8636 bytes: control archive=2060 bytes. 538 bytes, 15 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-pharmacy Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: chemtool, r-cran-dosefinding, r-cran-rpact Suggests: raccoon Section: metapackages Priority: optional Description: Debian Med packages for pharmaceutical research This metapackage contains dependencies for a collection of software and documentation which is useful for pharmaceutical research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-pharmacy -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/pharmacy drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-pharmacy.1.gz -> med-config.1.gz med-physics_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 8936 bytes: control archive=2188 bytes. 684 bytes, 16 lines control 487 bytes, 7 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-physics Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: biosig-tools, gdf-tools, octave, r-base Suggests: gate, libbiosig-dev, octave-biosig, openvibe, paw, paw++, paw-demos, python3-biosig, python3-multipletau Section: metapackages Priority: optional Description: Debian Med packages for medical physicists This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-physics -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 120 2023-05-22 12:04 ./usr/share/blends/med/menu/octave -rw-r--r-- root/root 104 2023-05-22 12:04 ./usr/share/blends/med/menu/r-base drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/physics drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-physics/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-physics/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-physics/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-physics.1.gz -> med-config.1.gz med-practice_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8792 bytes: control archive=2220 bytes. 836 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-practice Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: entangle, gnumed-client, gnumed-server, libchipcard-tools, orthanc, orthanc-wsi, oscar, qrisk2, r-cran-medadherence Suggests: clearhealth, elementalclinic, elexis, freeb, freediams, freemed, freemedforms-emr, freeshim, ginkgocadx, libctapimkt1, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, remitt, resmedicinae, sqlclinic, thera-pi, tinyheb Section: metapackages Priority: optional Description: Debian Med packages for practice management This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-practice -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/practice drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-practice/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-practice/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-practice/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-practice.1.gz -> med-config.1.gz med-psychology_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8704 bytes: control archive=2128 bytes. 696 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-psychology Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: orthanc-neuro, praat, psignifit, python3-bioxtasraw, r-cran-foreign, r-cran-psy, r-cran-psych, r-cran-psychometric, r-cran-psychotree, r-cran-psyphy Suggests: psychopy, python-pyepl, python3-bids-validator, python3-bmtk, science-psychophysics Section: metapackages Priority: optional Description: Debian Med packages for psychology This metapackage contains dependencies for a collection of software which might be helpful for psychological research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-psychology -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/psychology drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-psychology/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-psychology/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-psychology/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-psychology.1.gz -> med-config.1.gz med-research_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8592 bytes: control archive=2016 bytes. 447 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-research Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: r-cran-rpact Suggests: openclinica Section: metapackages Priority: optional Description: Debian Med packages for medical research This metapackage will install tools that are useful for medical research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-research -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/research drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-research/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-research/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-research/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-research.1.gz -> med-config.1.gz med-statistics_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8692 bytes: control archive=2112 bytes. 673 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-statistics Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: r-bioc-edger, r-bioc-limma, r-bioc-multtest, r-bioc-qvalue, r-cran-ade4, r-cran-beeswarm, r-cran-pvclust, r-cran-randomforest, r-cran-rwave, r-cran-snowfall, r-cran-waveslim, r-cran-wavethresh Suggests: rstudio, science-statistics Section: metapackages Priority: optional Description: Debian Med statistics This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-statistics -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/statistics drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-statistics/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-statistics/README.Debian -rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-statistics/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-statistics.1.gz -> med-config.1.gz med-tasks_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 8340 bytes: control archive=680 bytes. 400 bytes, 14 lines control 356 bytes, 5 lines md5sums Package: med-tasks Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 24 Depends: tasksel Section: misc Priority: optional Description: Debian Med tasks for tasksel This package provides Debian Med tasks in tasksel. . These tasks are described in detail at https://blends.debian.org/med/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tasks/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/README -rw-r--r-- root/root 4900 2023-05-22 12:04 ./usr/share/doc/med-tasks/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 219 2023-05-22 12:04 ./usr/share/lintian/overrides/med-tasks drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/descs/ -rw-r--r-- root/root 6102 2023-05-22 12:04 ./usr/share/tasksel/descs/debian-med-tasks.desc med-tools_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 8748 bytes: control archive=2176 bytes. 733 bytes, 14 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-tools Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: cronometer, cycle, edfbrowser, galileo, hunspell-de-med, hunspell-en-med, nutsqlite, pcalendar, python3-fitbit, quitcount, r-cran-fitbitscraper, r-cran-fitcoach, wgerman-medical, workrave Suggests: entangle, goldencheetah, mencal, mssstest, nut-nutrition, oscar, pesco, pondus Section: metapackages Priority: optional Description: Debian Med several tools This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-tools -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/tools drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tools/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-tools/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-tools/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-tools.1.gz -> med-config.1.gz med-typesetting_3.8.1_all.deb ----------------------------- new Debian package, version 2.0. size 8672 bytes: control archive=2096 bytes. 597 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-typesetting Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: king, texlive-latex-extra, texlive-science Suggests: biber, bibus, jabref-plugin-oo, kbibtex, r-cran-qqman Section: metapackages Priority: optional Description: Debian Med support for typesetting and publishing This metapackage will install Debian packages that might be helpful for typesetting and publishing in medical care and structural biology. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-typesetting -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 12 2023-05-22 12:04 ./usr/share/blends/tasks/med/typesetting drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-typesetting/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README.Debian -rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-typesetting/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-typesetting.1.gz -> med-config.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 5180 Build-Time: 10 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 9 Job: /srv/debomatic/incoming/debian-med_3.8.1.dsc Machine Architecture: amd64 Package: debian-med Package-Time: 22 Source-Version: 3.8.1 Space: 5180 Status: successful Version: 3.8.1 -------------------------------------------------------------------------------- Finished at 2024-09-15T01:00:07Z Build needed 00:00:22, 5180k disk space