sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | debian-med 3.8.1 (amd64) Mon, 03 Jun 2024 02:09:17 +0000 | +==============================================================================+ Package: debian-med Version: 3.8.1 Source Version: 3.8.1 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-90d630f8-12aa-48b4-8124-6ba63b0254bf' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.8.1 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.8.1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/debian-med-kRKSHq/resolver-I4zskh' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Get:2 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Hit:3 http://localhost:3142/debian unstable InRelease Hit:4 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/debian-med_3.8.1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/debian-med-kRKSHq/debian-med-3.8.1' with '<>' I: NOTICE: Log filtering will replace 'build/debian-med-kRKSHq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~) Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [661 B] Get:5 copy:/<>/apt_archive ./ Packages [673 B] Fetched 1943 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-blends python3-chardet python3-debian python3-minimal python3-pkg-resources python3.11 python3.11-minimal sensible-utils tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc blends-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-apt-doc python3-psycopg2 python3-setuptools python3.11-venv python3.11-doc binfmt-support Recommended packages: python3-psycopg2 curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl lsb-release iso-codes zstd ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libfakeroot libfile-stripnondeterminism-perl libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-blends python3-chardet python3-debian python3-minimal python3-pkg-resources python3.11 python3.11-minimal sbuild-build-depends-main-dummy sensible-utils tzdata 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 26.1 MB of archives. After this operation, 104 MB of additional disk space will be used. 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[9332 B] Get:12 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get:13 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:16 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:17 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:19 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:20 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:22 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:23 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:24 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:25 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:26 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:30 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:33 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:34 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:35 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get:38 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:39 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:40 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:41 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:42 http://localhost:3142/debian unstable/main amd64 python-apt-common all 2.9.0 [66.2 kB] Get:43 http://localhost:3142/debian unstable/main amd64 distro-info-data all 0.62 [6344 B] Get:44 http://localhost:3142/debian unstable/main amd64 python3-apt amd64 2.9.0 [206 kB] Get:45 http://localhost:3142/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get:46 http://localhost:3142/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get:47 http://localhost:3142/debian unstable/main amd64 python3-debian all 0.1.49 [115 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libjs-sphinxdoc all 7.2.6-8 [150 kB] Get:51 http://localhost:3142/debian unstable/main amd64 python3-blends all 0.7.7 [32.4 kB] Get:52 http://localhost:3142/debian unstable/main amd64 blends-dev all 0.7.7 [22.8 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:54 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.1 MB in 0s (131 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... 21779 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 22095 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../43-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up distro-info-data (0.62) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 3 02:09:33 UTC 2024. Universal Time is now: Mon Jun 3 02:09:33 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up python-apt-common (2.9.0) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.11.8-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-apt (2.9.0) ... Setting up debhelper (13.15.3) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-debian (0.1.49) ... Setting up python3-blends (0.7.7) ... Setting up blends-dev (0.7.7) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 blends-dev_0.7.7 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 distro-info-data_0.62 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libexpat1_2.6.2-1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 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python3-pkg-resources_68.1.2-2 python3.11_3.11.9-1 python3.11-minimal_3.11.9-1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 tzdata_2024a-4 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (native) Source: debian-med Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting Architecture: all Version: 3.8.1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/blends-team/med Vcs-Git: https://salsa.debian.org/blends-team/med.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: blends-dev (>= 0.7.5~) Package-List: med-all deb metapackages optional arch=all med-bio deb metapackages optional arch=all med-bio-dev deb metapackages optional arch=all med-cloud deb metapackages optional arch=all med-config deb misc optional arch=all med-data deb metapackages optional arch=all med-dental deb metapackages optional arch=all med-epi deb metapackages optional arch=all med-his deb metapackages optional arch=all med-imaging deb metapackages optional arch=all med-imaging-dev deb metapackages optional arch=all med-laboratory deb metapackages optional arch=all med-oncology deb metapackages optional arch=all med-pharmacy deb metapackages optional arch=all med-physics deb metapackages optional arch=all med-practice deb metapackages optional arch=all med-psychology deb metapackages optional arch=all med-research deb metapackages optional arch=all med-statistics deb metapackages optional arch=all med-tasks deb misc optional arch=all med-tools deb metapackages optional arch=all med-typesetting deb metapackages optional arch=all Checksums-Sha1: 9da32b7486a6f3dab3fd19bfdf5b20e39f66a47b 126456 debian-med_3.8.1.tar.xz Checksums-Sha256: 5e2047554ebd7aa547ade3b9567daa4be823827b5bcd72b9f9c3289b8731b913 126456 debian-med_3.8.1.tar.xz Files: 6f2bd016b2bf6facbcab25de8338d355 126456 debian-med_3.8.1.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmRrX5kRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH4iRAAizVsnRb7CQ5a5vnfvYdD8CeBUNd2PgiT c7jD/N3xT67PVYdoPPhQaUG04BqPPD2xkLqRfh9J9Ab7IPXU7Rl164vtk7OQQY0d +9mUofc9eob6ItkZApanyEaEOaAPdj0YY01mYmY45tPxFiDvk3AIlknfl2UOfsTg 7rmuvpEadXy81ucz01LEk4VUbCQrmIMAfJKqI3dfzcnneS5GxmOIM1ZPPAZCpBZH MxJioCVDcHoU0GUPsP6+d8i8HmA4Lt8K7rvpAaRcJ9g3rNF4aGCAZtleXOwA7tkt 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Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.8.1 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.8.1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-90d630f8-12aa-48b4-8124-6ba63b0254bf SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot dpkg-buildpackage: info: source package debian-med dpkg-buildpackage: info: source version 3.8.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' # call make clean instead of distclean make clean make[2]: Entering directory '/<>' rm -rf tmp rm -f tasks/*~ rm -rf tasksel rm -f packages.txt by_vote packages-sorted.txt rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' # hmmm, that would kill debian/control - so don't do this! # /usr/bin/make -f /usr/share/blends-dev/Makefile clean # Clear apt-get cache rm -rf tmp # Remove backup files from source tarball rm -f tasks/*~ # Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \ rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \ done # rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst # remove auto generated files for config package rm -f debian/med-config.templates debian/med-config.config \ debian/med-config.install debian/med-config.links \ debian/90med-config # remove auto generated debconf template translations rm -rf debian/po # remove possibly remaining debhelper files rm -f debian/med-*.debhelper.log dh_clean make[1]: Leaving directory '/<>' dpkg-source -b . dpkg-source: info: using source format '3.0 (native)' dpkg-source: info: building debian-med in debian-med_3.8.1.tar.xz dpkg-source: info: building debian-med in debian-med_3.8.1.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # do nothing, we just called the make install target in advance # and want to build the packages without network access make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/<>' /usr/share/blends-dev/blend-install-helper dh_install debian-med-tasks.desc usr/share/tasksel/descs make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' dh_installdocs -A README make[1]: Leaving directory '/<>' dh_installchangelogs dh_installman dh_installdebconf dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'med-tasks' in '../med-tasks_3.8.1_all.deb'. dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.8.1_all.deb'. dpkg-deb: building package 'med-config' in '../med-config_3.8.1_all.deb'. dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.8.1_all.deb'. dpkg-deb: building package 'med-oncology' in '../med-oncology_3.8.1_all.deb'. dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.8.1_all.deb'. dpkg-deb: building package 'med-all' in '../med-all_3.8.1_all.deb'. dpkg-deb: building package 'med-physics' in '../med-physics_3.8.1_all.deb'. dpkg-deb: building package 'med-bio' in '../med-bio_3.8.1_all.deb'. dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.8.1_all.deb'. dpkg-deb: building package 'med-practice' in '../med-practice_3.8.1_all.deb'. dpkg-deb: building package 'med-cloud' in '../med-cloud_3.8.1_all.deb'. dpkg-deb: building package 'med-data' in '../med-data_3.8.1_all.deb'. dpkg-deb: building package 'med-psychology' in '../med-psychology_3.8.1_all.deb'. dpkg-deb: building package 'med-dental' in '../med-dental_3.8.1_all.deb'. dpkg-deb: building package 'med-research' in '../med-research_3.8.1_all.deb'. dpkg-deb: building package 'med-epi' in '../med-epi_3.8.1_all.deb'. dpkg-deb: building package 'med-statistics' in '../med-statistics_3.8.1_all.deb'. dpkg-deb: building package 'med-tools' in '../med-tools_3.8.1_all.deb'. dpkg-deb: building package 'med-his' in '../med-his_3.8.1_all.deb'. dpkg-deb: building package 'med-imaging' in '../med-imaging_3.8.1_all.deb'. dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.8.1_all.deb'. dpkg-genbuildinfo -O../debian-med_3.8.1_amd64.buildinfo dpkg-genchanges -O../debian-med_3.8.1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload; Debian-native package (full source is included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T02:09:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ debian-med_3.8.1_amd64.changes: ------------------------------- Format: 1.8 Date: Mon, 22 May 2023 14:04:33 +0200 Source: debian-med Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting Architecture: source all Version: 3.8.1 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-research - Debian Med packages for medical research med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (3.8.1) unstable; urgency=medium . * Standards-Version: 4.6.2 * Update dependencies to fit Bookworm release status . * start of automatic changelog entry * . * 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1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), distro-info-data (= 0.62), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libapt-pkg6.0t64 (= 2.9.4), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgcrypt20 (= 1.10.3-3), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgpg-error0 (= 1.49-2), libgprofng0 (= 2.42-4), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 7.2.6-8), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), liblsan0 (= 14.1.0-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.5-2), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libpython3-stdlib (= 3.11.8-1), libpython3.11-minimal (= 3.11.9-1), libpython3.11-stdlib (= 3.11.9-1), libquadmath0 (= 14.1.0-1), libreadline8t64 (= 8.2-4), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libsqlite3-0 (= 3.46.0-1), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsystemd0 (= 256~rc3-7), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-7), libxml2 (= 2.12.7+dfsg-2), libxxhash0 (= 0.8.2-2+b1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), netbase (= 6.4), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), po-debconf (= 1.0.21+nmu1), python-apt-common (= 2.9.0), python3 (= 3.11.8-1), python3-apt (= 2.9.0), python3-blends (= 0.7.7), python3-chardet (= 5.2.0+dfsg-1), python3-debian (= 0.1.49), python3-minimal (= 3.11.8-1), python3-pkg-resources (= 68.1.2-2), python3.11 (= 3.11.9-1), python3.11-minimal (= 3.11.9-1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), tzdata (= 2024a-4), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1684757073" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ med-all_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 6724 bytes: control archive=716 bytes. 654 bytes, 13 lines control 198 bytes, 3 lines md5sums Package: med-all Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 13 Recommends: med-bio, med-bio-dev, med-statistics Suggests: med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-tools, med-typesetting Section: metapackages Priority: optional Description: Default selection of tasks for Debian Med This package is part of the Debian Med Pure Blend and installs all tasks for a default installation of this blend. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-all/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/README -rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-all/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/copyright med-bio-dev_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 11184 bytes: control archive=4440 bytes. 8077 bytes, 14 lines control 426 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio-dev Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 32 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread, goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev, libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl, libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiococoa-dev, libbiojava-java, libbiojava4-java, libbiojava6-java, libbioparser-dev, libblasr-dev, libbpp-core-dev, libbpp-phyl-dev, libbpp-phyl-omics-dev, libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev, libbpp-seq-dev, libbpp-seq-omics-dev, libcdk-java, libchado-perl, libcifpp-dev, libconsensuscore-dev, libdivsufsort-dev, libedlib-dev, libfast5-dev, libfastahack-dev, libffindex0-dev, libfml-dev, libgatbcore-dev, libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl, libgenome-perl, libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl, libhdf5-dev, libhmsbeagle-dev, libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java, libjloda-java, libkmer-dev, libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev, libncbi6-dev, libncl-dev, libngs-java, libnhgri-blastall-perl, libopenmm-dev, libopenms-dev, libpal-java, libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev, libpbseq-dev, libpdb-redo-dev, libpll-dev, libpwiz-dev, libqes-dev, librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java, librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast0-dev, librostlab3-dev, libsbml5-dev, libseqan2-dev, libseqan3-dev, libseqlib-dev, libslow5-dev, libsmithwaterman-dev, libsnp-sites1-dev, libsort-key-top-perl, libspoa-dev, libsrf-dev, libssm-dev, libssu-dev, libssw-dev, libssw-java, libstaden-read-dev, libstatgen-dev, libswiss-perl, libtabixpp-dev, libthread-pool-dev, libvcflib-dev, libvibrant6-dev, libwfa2-dev, libzerg-perl, libzerg0-dev, mcl, nim-hts-dev, nim-kexpr-dev, nim-lapper-dev, ont-fast5-api, pyfai, python3-airr, python3-anndata, python3-bcbio-gff, python3-bioframe, python3-biom-format, python3-biomaj3, python3-biopython, python3-biotools, python3-bx, python3-cgecore, python3-cigar, python3-cobra, python3-cogent3, python3-cooler, python3-corepywrap, python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-dendropy, python3-dnaio, python3-ete3, python3-fast5, python3-freecontact, python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq, python3-intervaltree-bio, python3-kineticstools, python3-loompy, python3-mirtop, python3-nanoget, python3-ngs, python3-pairix, python3-pangolearn, python3-parasail, python3-pbcommand, python3-pbconsensuscore, python3-pbcore, python3-peptidebuilder, python3-presto, python3-propka, python3-py2bit, python3-pyabpoa, python3-pyani, python3-pybedtools, python3-pybel, python3-pybigwig, python3-pyfaidx, python3-pyfastx, python3-pymummer, python3-pyranges, python3-pysam, python3-pyspoa, python3-pyvcf, python3-rdkit, python3-ruffus, python3-screed, python3-shasta, python3-skbio, python3-slow5, python3-sqt, python3-streamz, python3-tinyalign, python3-torch, python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase, r-cran-boolnet, r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast, r-cran-genetics, r-cran-gprofiler2, r-cran-haplo.stats, r-cran-metamix, r-cran-phangorn, r-cran-pheatmap, r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml, r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake, toil Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev, cwlformat, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev, libbiosoup-dev, libbtllib-dev, libcapsule-maven-nextflow-java, libconcurrentqueue-dev, libdisorder-dev, libfast-perl, libforester-java, libfreecontact-dev, libfreecontact-doc, libfreecontact-perl, libgatk-bwamem-java, libgatk-bwamem-jni, libgatk-fermilite-java, libgatk-fermilite-jni, libgatk-native-bindings-java, libgenomicsdb-dev, libgenomicsdb-java, libicb-utils-java, libmaus2-dev, libmilib-java, libminimap-dev, libmmblib-dev, libmodhmm-dev, libnexml-java, libngs-sdk-dev, libpbcopper-dev, libqcpp-dev, librelion-dev, libroadrunner-dev, librostlab-blast-doc, librostlab-doc, libsavvy-dev, libsuma-dev, libsvmloc-dev, libswarm2-dev, libterraces-dev, libtfbs-perl, libvbz-hdf-plugin-dev, libxxsds-dynamic-dev, octace-bioinfo, python-biopython-doc, python3-alignlib, python3-bcbio, python3-bel-resources, python3-bioblend, python3-biopython-sql, python3-cgelib, python3-compclust, python3-conda-package-streaming, python3-consensuscore2, python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy, python3-misopy, python3-ncls, python3-networkx, python3-pycosat, python3-pyflow, python3-roadrunner, python3-scanpy, python3-seqcluster, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun, q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser, r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics, r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap, r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz, r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage, r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation, r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation, r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight, r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools, r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv, r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc, r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook, r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp, ruby-rgfa, vdjtools Section: metapackages Priority: optional Description: Debian Med packages for development of bioinformatics applications This metapackage will install Debian packages which might be helpful for development of applications for biological research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio-dev -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 371 2023-05-22 12:04 ./usr/share/blends/med/menu/libncbi6-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio-dev.1.gz -> med-config.1.gz med-bio_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 13992 bytes: control archive=6604 bytes. 11319 bytes, 14 lines control 620 bytes, 9 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 43 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abacas, abpoa, abyss, acedb-other, adapterremoval, adun-core, aegean, aevol, alien-hunter, alter-sequence-alignment, altree, amap-align, ampliconnoise, andi, any2fasta, aragorn, arden, ariba, art-nextgen-simulation-tools, artemis, artfastqgenerator, assembly-stats, assemblytics, atac, ataqv, atropos, augur, augustus, autodock, autodock-vina, autogrid, avogadro, axe-demultiplexer, baitfisher, bali-phy, ballview, bamclipper, bamkit, bamtools, bandage, barrnap, bbmap, bcalm, bcftools, beads, beagle, beast-mcmc, beast2-mcmc, bedops, bedtools, belvu, berkeley-express, bio-eagle, bio-rainbow, bio-tradis, bio-vcf, bioawk, biobambam2, biosyntax, bitseq, blasr, blixem, bolt-lmm, bowtie, bowtie2, boxshade, bppphyview, bppsuite, brig, btllib-tools, busco, bustools, bwa, canu, cassiopee, cat-bat, cct, cd-hit, cdbfasta, centrifuge, cgview, changeo, chimeraslayer, chromhmm, chromimpute, cif-tools, circlator, circos, clearcut, clonalframe, clonalframeml, clonalorigin, clustalo, clustalw, clustalx, cnvkit, codonw, comet-ms, concavity, conservation-code, covtobed, crac, csb, cutadapt, cutesv, daligner, damapper, datamash, dawg, dazzdb, delly, density-fitness, dextractor, dialign, dialign-tx, diamond-aligner, discosnp, disulfinder, dnaclust, dnarrange, dotter, drop-seq-tools, dssp, dwgsim, e-mem, ea-utils, ecopcr, edtsurf, eigensoft, elph, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, emmax, estscan, examl, exonerate, fasta3, fastahack, fastani, fastaq, fastdnaml, fastlink, fastml, fastp, fastq-pair, fastqc, fastqtl, fasttree, ffindex, figtree, filtlong, fitgcp, flash, flexbar, flye, fml-asm, freebayes, freecontact, fsa, fsm-lite, gamgi, garli, garlic, gasic, gatb-core, gbrowse, gdpc, gemma, genometester, genomethreader, genometools, genomicsdb-tools, gentle, gff2aplot, gff2ps, gffread, ggd-utils, ghemical, ghmm, glam2, gmap, grabix, graphlan, grinder, gromacs, gsort, gubbins, gwama, harvest-tools, hhsuite, hilive, hinge, hisat2, hmmer, hmmer2, hyphy-mpi | hyphy-pt, idba, igblast, igor, igv, indelible, infernal, insilicoseq, ipig, iqtree, iva, jaligner, jalview, jellyfish, jellyfish1, jmodeltest, jmol, kalign, kallisto, kaptive, khmer, kineticstools, king-probe, kissplice, kleborate, kma, kmc, kmer, kmerresistance, kraken, kraken2, lagan, lamarc, lamassemble, lambda-align, lambda-align2, last-align, lastz, leaff, lefse, libpwiz-tools, librg-utils-perl, libvcflib-tools, lighter, logol, loki, ltrsift, lucy, lumpy-sv, macs, macsyfinder, maffilter, mafft, malt, mapdamage, mapsembler2, maq, maqview, mash, massxpert, mauve-aligner, mcaller, mecat2, megadepth, megahit, megan-ce, melting, meryl, metabat, metaphlan, metastudent, mhap, microbegps, microbiomeutil, mindthegap, minexpert2, minia, miniasm, minimac4, minimap, minimap2, mipe, mira-assembler, mirtop, mlv-smile, mmb, mmseqs2, mosdepth, mothur, mptp, mrbayes, multiqc, mummer, murasaki | murasaki-mpi, muscle, muscle3, mustang, nanofilt, nanolyse, nanook, nanopolish, nanostat, nanosv, nast-ier, ncbi-acc-download, ncbi-blast+, ncbi-blast+-legacy, ncbi-entrez-direct, ncbi-epcr, ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncl-tools, ncoils, neobio, ngmlr, njplot, norsnet, norsp, ntcard, nxtrim, obitools, openms, optimir, pal2nal, paleomix, paml, paraclu, parasail, parsinsert, parsnp, patman, pbdagcon, pbhoney, pbjelly, pbsim, pbsuite, pdb2pqr, perlprimer, perm, pftools, phast, phipack, phybin, phylip, phylonium, phyml, physamp, phyutility, phyx, picard-tools, picopore, pigx-rnaseq, piler, pilercr, pilon, pinfish, pique, pirs, pizzly, placnet, plasmidid, plasmidomics, plasmidseeker, plast, plink, plink1.9, plink2, plip, poa, populations, porechop, poretools, prank, predictnls, presto, prime-phylo, primer3, prinseq-lite, proalign, probabel, probalign, probcons, proda, prodigal, profbval, profisis, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net, profphd-utils, proftmb, progressivemauve, prokka, proteinortho, prottest, provean, pscan-chip, pscan-tfbs, psortb, pullseq, pycoqc, pycorrfit, pyensembl, pyfastx, pymol, pyscanfcs, python3-biomaj3-daemon, python3-cogent3, python3-emperor, python3-geneimpacts, python3-gffutils, python3-pairtools, python3-pybedtools, python3-sqt, python3-treetime, pyvcf, qcat, qcumber, qiime, qtltools, quicktree, quorum, qutemol, r-bioc-annotate, r-bioc-biostrings, r-bioc-cner, r-bioc-cummerbund, r-bioc-deseq2, r-bioc-ebseq, r-bioc-edger, r-bioc-genefilter, r-bioc-geoquery, r-bioc-hilbertvis, r-bioc-htsfilter, r-bioc-impute, r-bioc-limma, r-bioc-megadepth, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-mutationalpatterns, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-rtracklayer, r-bioc-scater, r-bioc-tfbstools, r-cran-adegenet, r-cran-adephylo, r-cran-alakazam, r-cran-ape, r-cran-bio3d, r-cran-distory, r-cran-genabel, r-cran-kaos, r-cran-metamix, r-cran-phangorn, r-cran-phytools, r-cran-pscbs, r-cran-qtl, r-cran-rotl, r-cran-samr, r-cran-sdmtools, r-cran-seqinr, r-cran-seurat, r-cran-shazam, r-cran-spp, r-cran-tcr, r-cran-tigger, r-cran-treescape, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, r-cran-wgcna, r-other-ascat, r-other-mott-happy.hbrem, r-other-rajewsky-dropbead, racon, radiant, ragout, rambo-k, rampler, rapmap, rasmol, raster3d, rate4site, raxml, ray, rdp-alignment, rdp-classifier, rdp-readseq, readseq, readucks, reapr, recan, relion, relion-gui, repeatmasker-recon, reprof, resfinder, rna-star, rnahybrid, roary, rockhopper, roguenarok, rsem, rtax, runcircos-gui, saint, salmid, salmon, sambamba, samblaster, samclip, samtools, savvy-util, scoary, scrappie, scrm, scythe, seaview, seer, segemehl, seqan-apps, seqan-needle, seqan-raptor, seqkit, seqmagick, seqprep, seqsero, seqtk, sga, shasta, shovill, sibelia, sibsim4, sickle, sigma-align, sim4, sim4db, simka, simkamin, ska, skesa, skewer, smalt, smithwaterman, smrtanalysis, snap, snap-aligner, sniffles, snp-sites, snpeff, snpomatic, snpsift, soapaligner, soapdenovo, soapdenovo2, soapsnp, sortmerna, spaced, spades, spaln, spoa, sprai, spread-phy, squizz, sra-toolkit, srst2, ssake, sspace, ssw-align, stacks, staden, staden-io-lib-utils, stringtie, subread, suitename, sumaclust, sumatra, sumtrees, surankco, surpyvor, survivor, svim, swarm, sweed, t-coffee, tabix, tantan, terraphast, theseus, thesias, tiddit, tigr-glimmer, tm-align, tnseq-transit, toil, tombo, tophat-recondition, topp, toppred, tortoize, trace2dbest, tracetuner, transdecoder, transrate-tools, transtermhp, tree-puzzle | tree-ppuzzle, treeview, treeviewx, trf, trim-galore, trimmomatic, tvc, twopaco, uc-echo, umap-learn, umis, uncalled, unicycler, unikmer, varna, vcfanno, vcftools, velvet | velvet-long, velvetoptimiser, virulencefinder, vmatch, vsearch, vt, wham-align, wigeon, wise, xpore, yaha, yanagiba, yanosim Suggests: acacia, adun.app, agat, amos-assembler, amoscmp, anfo, annovar, apollo, arachne, arb, arvados, asap, axparafit, axpcoords, bagpipe, bambus, bax2bam, bcbio, biceps, big-blast, bigsdb, bismark, blat, blimps-utils, blobology, braker, btk-core, cactus, caftools, card-rgi, catfishq, cdna-db, cellprofiler, cinema, cluster3, cmap, conda-package-handling, condetri, contrafold, contralign, coot, copycat, covpipe, crossbow, crux-toolkit, cufflinks, cytoscape, dascrubber, dazzle, deepbinner, deepnano, dendroscope, diann, dnapi, e-hive, ecell, embassy-phylip, emboss-explorer, ensembl, ensembl-vep, epigrass, estferret, euler-sr, euler2, exabayes, exalt, excavator, ffp, fieldbioinformatics, figaro, flappie, forester, forge, galaxy, gatk, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gerp++, getdata, glimmerhmm, gmv, gramalign, graphbin, graphmap2, haploview, hawkeye, htqc, hts-nim-tools, idefix, idseq-bench, igdiscover, illustrate, inspect, jbrowse, jigsaw, kempbasu, libhdf5-dev, libhnswlib-dev, lofreq, mach-haplotyper, mage2tab, maker2, manta, marginphase, martj, maude, maxd, medaka, meme, mesquite, metabit, metaeuk, metarep, metastudent-data, metastudent-data-2, migrate, minimus, mirbase, modeller, molekel, mosaik-aligner, mpsqed, mrs, msatfinder, mugsy, mummergpu, mview, nano-snakemake, nanocall, nanocomp, nanoplot, ncbi-magicblast, nextsv, ngila, ngsqctoolkit, nw-align, oases, obo-edit, oligoarrayaux, omegamap, oncofuse, operondb, optitype, paipline, pangolin, partigene, partitionfinder, patristic, pcma, pfaat, phagefinder, phpphylotree, phylographer, phylophlan, phyloviz-core, phylowin, pigx-scrnaseq, pipasic, plato, pomoxis, pplacer, profit, profphd, prot4est, psipred, pssh2, pufferfish, purple, pyrophosphate-tools, python3-alignlib, python3-anndata, python3-cgecore, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-htseq, python3-intake, python3-loompy, python3-nanoget, python3-nanomath, python3-ncls, python3-orange, python3-py2bit, python3-pybel, python3-pychopper, python3-pyfaidx, python3-pyflow, python3-pyranges, python3-pyrle, python3-pysam, python3-tinyalign, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-taxa, q2-types, q2-vsearch, q2cli, q2templates, qtlcart, qtlreaper, qualimap, quast, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-beachmat, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-bitseq, r-bioc-ctc, r-bioc-dnacopy, r-bioc-ensembldb, r-bioc-experimenthub, r-bioc-geneplotter, r-bioc-genomicalignments, r-bioc-genomicfiles, r-bioc-genomicranges, r-bioc-go.db, r-bioc-grohmm, r-bioc-gviz, r-bioc-isoformswitchanalyzer, r-bioc-mofa2, r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, r-bioc-qusage, r-bioc-savr, r-bioc-singlecellexperiment, r-bioc-structuralvariantannotation, r-bioc-tximport, r-cran-amap, r-cran-biwt, r-cran-boolnet, r-cran-corrplot, r-cran-drinsight, r-cran-dynamictreecut, r-cran-epir, r-cran-fitdistrplus, r-cran-forecast, r-cran-gprofiler2, r-cran-minerva, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pheatmap, r-cran-qqman, r-cran-rcpphnsw, r-cran-rentrez, r-cran-sctransform, r-other-apmswapp, r-other-fastbaps, raccoon, raxml-ng, rbs-finder, relion-cuda, relion-gui-cuda, repeatmasker, resfinder-db, roadtrips, roche454ace2caf, rosa, rose, rsat, sailfish, sap, science-workflow, sepp, seq-gen, seq-seq-pan, seqcluster, seqwish, sift, signalalign, sina, sistr, situs, snippy, solvate, sourmash, sparta, splitstree, ssaha, strap, strap-base, strelka, tab2mage, tacg, tandem-genotypes, taverna, taxinspector, tetra, tide, tigr-glimmer-mg, tipp, tn-seqexplorer, tophat, treebuilder3d, trinityrnaseq, tripal, trnascan-se, twain, ufasta, ugene, umap, unc-fish, uniprime, varmatch, varscan, vdjtools, vg, vienna-rna, viewmol, vmd, x-tandem-pipeline, zodiac-zeden Section: metapackages Priority: optional Description: Debian Med bioinformatics packages This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 2599 2023-05-22 12:04 ./usr/share/blends/med/menu/blast2 -rw-r--r-- root/root 4032 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-bin -rw-r--r-- root/root 1220 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-x11 drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 89 2023-05-22 12:04 ./usr/share/lintian/overrides/med-bio drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio.1.gz -> med-config.1.gz med-cloud_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 9468 bytes: control archive=2896 bytes. 2175 bytes, 16 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-cloud Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira Section: metapackages Priority: optional Description: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-cloud -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/cloud drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-cloud/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-cloud/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-cloud/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-cloud.1.gz -> med-config.1.gz med-config_3.8.1_all.deb ------------------------ new Debian package, version 2.0. size 11116 bytes: control archive=3412 bytes. 87 bytes, 3 lines conffiles 1416 bytes, 54 lines * config #!/bin/sh 1591 bytes, 40 lines control 396 bytes, 6 lines md5sums 1355 bytes, 46 lines * postinst #!/bin/sh 214 bytes, 8 lines * postrm #!/bin/sh 2717 bytes, 48 lines templates Package: med-config Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 40 Depends: adduser, debconf (>= 0.5) | debconf-2.0, menu, blends-common (>= 0.6.15) Conflicts: med-common Replaces: med-common Provides: med-common Section: misc Priority: optional Description: Debian Med general config package This package provides the basic infrastructure of all metapackages assembled by the Debian Med team. . This metapackage provides common features shared between the different metapackages of the project. Moreover it introduces a method to handle a 'med' system users group using debconf. . The Debian Med Project include metapackages for different tasks, which are: * applications for microbiological research and support for development of biological applications * cloud computing in microbiological research * drug databases * dental surgery practice * epidemiology and medical statistics * image processing and support for imaging application development * pharmacological research * radiation oncology, diagnostic imaging and related fields * medical practice * psychological research and practice * rehabilitation * typesetting and publishing * miscellaneous tools . Each task is represented by a metapackage. Metapackages do not contain executable programs, but rather dependencies from other packages. This way you will conveniently get all free medical software which is available for Debian by simply installing the relevant metapackage drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/apt.conf.d/ -rw-r--r-- root/root 255 2023-05-22 12:04 ./etc/apt/apt.conf.d/90med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/med/ -rw-r--r-- root/root 260 2023-05-22 12:04 ./etc/blends/med/med.conf drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/profile.d/ -rw-r--r-- root/root 905 2023-05-22 12:04 ./etc/profile.d/debian-med.sh drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ -rwxr-xr-x root/root 186 2023-05-22 12:04 ./usr/bin/med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/med-task-files -> ../../share/blends/blend-task-lister drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-config/ -rw-r--r-- root/root 311 2023-05-22 12:04 ./usr/share/doc/med-config/NEWS.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/README -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-config/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ -rw-r--r-- root/root 328 2023-05-22 12:04 ./usr/share/man/man1/med-config.1.gz med-data_3.8.1_all.deb ---------------------- new Debian package, version 2.0. size 8640 bytes: control archive=2064 bytes. 534 bytes, 15 lines control 338 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-data Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: python3-hl7 Suggests: drugref.org, freediams, freemedforms-freedata, oscar Section: metapackages Priority: optional Description: Debian Med drug databases This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-data -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/data drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-data/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-data/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-data/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-data.1.gz -> med-config.1.gz med-dental_3.8.1_all.deb ------------------------ new Debian package, version 2.0. size 8628 bytes: control archive=2056 bytes. 513 bytes, 14 lines control 348 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-dental Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: entangle, imagetooth Suggests: openmolar Section: metapackages Priority: optional Description: Debian Med packages related to dental practice This metapackage contains dependencies for a collection of software which might be helpful for dentists to manage their practice. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-dental -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 7 2023-05-22 12:04 ./usr/share/blends/tasks/med/dental drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-dental/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-dental/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-dental/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-dental.1.gz -> med-config.1.gz med-epi_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 9152 bytes: control archive=2404 bytes. 1139 bytes, 17 lines control 403 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-epi Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 32 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: python3-seirsplus, python3-torch, python3-treetime, r-cran-covid19us, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epiestim, r-cran-epir, r-cran-epitools, r-cran-incidence, r-cran-kernelheaping, r-cran-lexrankr, r-cran-prevalence, r-cran-seroincidence, r-cran-sf, r-cran-sjplot, r-cran-surveillance Suggests: chime, epifire, epigrass, netepi-analysis, netepi-collection, python3-epimodels, r-cran-cmprsk, r-cran-covid19, r-cran-msm, repast, shiny-server, ushahidi Section: metapackages Priority: optional Description: Debian Med epidemiology related packages This metapackage will install tools that are useful in epidemiological research. Several packages making use of the GNU R data language for statistical investigation. It might be a good idea to read the paper "A short introduction to R for Epidemiology" at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-epi -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/epi drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-epi/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-epi/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-epi/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 232 2023-05-22 12:04 ./usr/share/lintian/overrides/med-epi drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-epi.1.gz -> med-config.1.gz med-his_3.8.1_all.deb --------------------- new Debian package, version 2.0. size 8788 bytes: control archive=2204 bytes. 799 bytes, 17 lines control 333 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-his Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: fis-gtm, orthanc-wsi Suggests: care2x, ewd-920, hkma-cms, ipath, openeyes, openmaxims, openmrs, oscar-mcmaster, patientos, tryton-modules-health, vista-foia, world-vista Section: metapackages Priority: optional Description: Debian Med suggestions for Hospital Information Systems This metapackage contains dependencies for software and that could be useful ro run a Hospital Information System. While there is continuous work going on to package a ready to install system currently only preconditions are finished but hopefully helpful in hospitals anyway. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-his -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 29 2023-05-22 12:04 ./usr/share/blends/tasks/med/his drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-his/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-his/README.Debian -rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-his/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-his.1.gz -> med-config.1.gz med-imaging-dev_3.8.1_all.deb ----------------------------- new Debian package, version 2.0. size 9036 bytes: control archive=2456 bytes. 1612 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging-dev Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: cimg-dev, ctn-dev, gmic, libbart-dev, libbiosig-dev, libcifti-dev, libedf-dev, libgdf-dev, libgiftiio-dev, libinsighttoolkit5-dev, libismrmrd-dev, libmaxflow-dev, libmdc2-dev, libmia-2.4-dev, libmialm-dev, libmiaviewit-dev, libminc-dev, libnifti2-dev, libodil-dev, libopencv-dev, libopenigtlink-dev, libopenslide-dev, libpapyrus3-dev, libsight-dev, libteem-dev, libvigraimpex-dev, libvistaio-dev, libvolpack1-dev, libvtk-dicom-dev, libvtk9-dev, libxdf-dev, octave-bart, octave-dicom, octave-gdf, odin, python3-biosig, python3-bioxtasraw, python3-brian, python3-dcmstack, python3-dipy, python3-gdcm, python3-imageio, python3-mia, python3-mne, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-openslide, python3-pydicom, python3-pyxnat, python3-torchvision, python3-vigra, r-cran-rniftilib Suggests: emokit, libbio-formats-java, libcamitk-dev, libcamp-dev, libctk-dev, libeegdev-dev, libfreeimage-dev, libgdcm2-dev, libics-dev, liblimereg-dev, libmni-perllib-perl, libnifti-doc, libopenmeeg-dev, libopenslide-java, libvia-dev, libvmtk-dev, libxdffileio-dev, python-vmtk, tifffile Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages development This metapackage will install Debian packages which might be useful for developing applications for medical image processing and visualization. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging-dev -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging-dev drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging-dev.1.gz -> med-config.1.gz med-imaging_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 9560 bytes: control archive=2984 bytes. 2522 bytes, 22 lines control 353 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: aeskulap, amide, bart, bart-view, biosig-tools, ctn, ctsim, dcm2niix, dcmtk, dicom3tools, dicomnifti, dicomscope, gdf-tools, gwyddion, heudiconv, imagej, invesalius, ismrmrd-tools, king, libgdcm-tools, medcon, mia-tools, mia-viewit, mialmpick, minc-tools, mriconvert, mricron, mrtrix3, nifti-bin, odil, odin, openslide-tools, orthanc, orthanc-wsi, pixelmed-apps, plastimatch, python3-dipy, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-pydicom, python3-pyxid, python3-surfer, sigviewer, teem-apps, tifffile, vrrender, vtk-dicom-tools, xmedcon Suggests: afni, ants, bart-cuda, bioimagesuite, bioimagexd, blox, brainvisa, camitk-imp, caret, cdmedicpacs, cellprofiler, cmtk, connectomeviewer, conquest-common, conquest-dbase, conquest-mysql, conquest-postgres, conquest-sqlite, crea, dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, ginkgocadx, hid, illustrate, imagemagick, imagevis3d, imview, incf-nidash-oneclick-clients, insightapplications, isis, itksnap, jemris, jist, kradview, libdcm4che-java, lipsia, maris, mayam, medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net, openelectrophy, openmeeg-tools, opensourcepacs, openwalnut-qt4, orthanc-dicomweb, orthanc-gdcm, orthanc-imagej, orthanc-mysql, orthanc-neuro, orthanc-postgresql, orthanc-webviewer, paraview, piano, pngquant, pymeg, science-workflow, slicer, sofa-apps, stabilitycalc, stir, tempo, trimage, via-bin, visit, vmtk, voxbo, xnat Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages This metapackage will install Debian packages which might be useful in medical image processing and visualization. . On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging.1.gz -> med-config.1.gz med-laboratory_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8648 bytes: control archive=2064 bytes. 521 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-laboratory Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: opencfu, orthanc-wsi Suggests: catissuesuite, openelis, openfreezer Section: metapackages Priority: optional Description: Debian Med suggestions for medical laboratories This metapackage contains dependencies for software and that could be useful ro run a medical laboratory. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-laboratory -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/laboratory drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-laboratory/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README.Debian -rw-r--r-- root/root 4903 2023-05-22 12:04 ./usr/share/doc/med-laboratory/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-laboratory.1.gz -> med-config.1.gz med-oncology_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8612 bytes: control archive=2040 bytes. 479 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-oncology Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: orthanc-wsi, simrisc Suggests: planunc, python3-dicompylercore, uw-prism Section: metapackages Priority: optional Description: Debian Med packages for oncology This metapackage will install tools that are useful for radiation oncology. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-oncology -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/oncology drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-oncology/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-oncology/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-oncology/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-oncology.1.gz -> med-config.1.gz med-pharmacy_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8636 bytes: control archive=2060 bytes. 538 bytes, 15 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-pharmacy Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: chemtool, r-cran-dosefinding, r-cran-rpact Suggests: raccoon Section: metapackages Priority: optional Description: Debian Med packages for pharmaceutical research This metapackage contains dependencies for a collection of software and documentation which is useful for pharmaceutical research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-pharmacy -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/pharmacy drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-pharmacy.1.gz -> med-config.1.gz med-physics_3.8.1_all.deb ------------------------- new Debian package, version 2.0. size 8936 bytes: control archive=2188 bytes. 684 bytes, 16 lines control 487 bytes, 7 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-physics Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: biosig-tools, gdf-tools, octave, r-base Suggests: gate, libbiosig-dev, octave-biosig, openvibe, paw, paw++, paw-demos, python3-biosig, python3-multipletau Section: metapackages Priority: optional Description: Debian Med packages for medical physicists This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-physics -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 120 2023-05-22 12:04 ./usr/share/blends/med/menu/octave -rw-r--r-- root/root 104 2023-05-22 12:04 ./usr/share/blends/med/menu/r-base drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/physics drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-physics/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-physics/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-physics/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-physics.1.gz -> med-config.1.gz med-practice_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8792 bytes: control archive=2220 bytes. 836 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-practice Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: entangle, gnumed-client, gnumed-server, libchipcard-tools, orthanc, orthanc-wsi, oscar, qrisk2, r-cran-medadherence Suggests: clearhealth, elementalclinic, elexis, freeb, freediams, freemed, freemedforms-emr, freeshim, ginkgocadx, libctapimkt1, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, remitt, resmedicinae, sqlclinic, thera-pi, tinyheb Section: metapackages Priority: optional Description: Debian Med packages for practice management This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-practice -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/practice drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-practice/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-practice/README.Debian -rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-practice/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-practice.1.gz -> med-config.1.gz med-psychology_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8704 bytes: control archive=2128 bytes. 696 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-psychology Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: orthanc-neuro, praat, psignifit, python3-bioxtasraw, r-cran-foreign, r-cran-psy, r-cran-psych, r-cran-psychometric, r-cran-psychotree, r-cran-psyphy Suggests: psychopy, python-pyepl, python3-bids-validator, python3-bmtk, science-psychophysics Section: metapackages Priority: optional Description: Debian Med packages for psychology This metapackage contains dependencies for a collection of software which might be helpful for psychological research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-psychology -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/psychology drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-psychology/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-psychology/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-psychology/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-psychology.1.gz -> med-config.1.gz med-research_3.8.1_all.deb -------------------------- new Debian package, version 2.0. size 8592 bytes: control archive=2016 bytes. 447 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-research Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: r-cran-rpact Suggests: openclinica Section: metapackages Priority: optional Description: Debian Med packages for medical research This metapackage will install tools that are useful for medical research. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-research -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/research drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-research/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-research/README.Debian -rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-research/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-research.1.gz -> med-config.1.gz med-statistics_3.8.1_all.deb ---------------------------- new Debian package, version 2.0. size 8692 bytes: control archive=2112 bytes. 673 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-statistics Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: r-bioc-edger, r-bioc-limma, r-bioc-multtest, r-bioc-qvalue, r-cran-ade4, r-cran-beeswarm, r-cran-pvclust, r-cran-randomforest, r-cran-rwave, r-cran-snowfall, r-cran-waveslim, r-cran-wavethresh Suggests: rstudio, science-statistics Section: metapackages Priority: optional Description: Debian Med statistics This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-statistics -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/statistics drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-statistics/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-statistics/README.Debian -rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-statistics/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-statistics.1.gz -> med-config.1.gz med-tasks_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 8340 bytes: control archive=680 bytes. 400 bytes, 14 lines control 356 bytes, 5 lines md5sums Package: med-tasks Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 24 Depends: tasksel Section: misc Priority: optional Description: Debian Med tasks for tasksel This package provides Debian Med tasks in tasksel. . These tasks are described in detail at https://blends.debian.org/med/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tasks/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/README -rw-r--r-- root/root 4900 2023-05-22 12:04 ./usr/share/doc/med-tasks/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 219 2023-05-22 12:04 ./usr/share/lintian/overrides/med-tasks drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/descs/ -rw-r--r-- root/root 6102 2023-05-22 12:04 ./usr/share/tasksel/descs/debian-med-tasks.desc med-tools_3.8.1_all.deb ----------------------- new Debian package, version 2.0. size 8748 bytes: control archive=2176 bytes. 733 bytes, 14 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-tools Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: cronometer, cycle, edfbrowser, galileo, hunspell-de-med, hunspell-en-med, nutsqlite, pcalendar, python3-fitbit, quitcount, r-cran-fitbitscraper, r-cran-fitcoach, wgerman-medical, workrave Suggests: entangle, goldencheetah, mencal, mssstest, nut-nutrition, oscar, pesco, pondus Section: metapackages Priority: optional Description: Debian Med several tools This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-tools -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/tools drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tools/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-tools/README.Debian -rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-tools/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-tools.1.gz -> med-config.1.gz med-typesetting_3.8.1_all.deb ----------------------------- new Debian package, version 2.0. size 8672 bytes: control archive=2096 bytes. 597 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-typesetting Source: debian-med Version: 3.8.1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 29 Depends: med-config (= 3.8.1), med-tasks (= 3.8.1) Recommends: king, texlive-latex-extra, texlive-science Suggests: biber, bibus, jabref-plugin-oo, kbibtex, r-cran-qqman Section: metapackages Priority: optional Description: Debian Med support for typesetting and publishing This metapackage will install Debian packages that might be helpful for typesetting and publishing in medical care and structural biology. drwxr-xr-x root/root 0 2023-05-22 12:04 ./ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-typesetting -> med-config drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 12 2023-05-22 12:04 ./usr/share/blends/tasks/med/typesetting drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-typesetting/ -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README -rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README.Debian -rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-typesetting/changelog.gz -rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/copyright drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/ drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-typesetting.1.gz -> med-config.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 5180 Build-Time: 12 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 12 Job: /srv/debomatic/incoming/debian-med_3.8.1.dsc Machine Architecture: amd64 Package: debian-med Package-Time: 31 Source-Version: 3.8.1 Space: 5180 Status: successful Version: 3.8.1 -------------------------------------------------------------------------------- Finished at 2024-06-03T02:09:48Z Build needed 00:00:31, 5180k disk space