sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | circos 0.69.9+dfsg-2 (amd64) Sat, 03 Aug 2024 18:09:24 +0000 | +==============================================================================+ Package: circos Version: 0.69.9+dfsg-2 Source Version: 0.69.9+dfsg-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-1d6e8af3-5eaa-48fe-b12f-ad4627e10f9d' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup circos_0.69.9+dfsg-2 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup circos_0.69.9+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/circos-IGFfb3/resolver-6DDGdu' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:3 http://localhost:3142/debian sid InRelease [198 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:4 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian sid/main Sources T-2024-08-03-1406.14-F-2024-08-03-1406.14.pdiff [24.1 kB] Get:5 http://localhost:3142/debian sid/main Sources T-2024-08-03-1406.14-F-2024-08-03-1406.14.pdiff [24.1 kB] Fetched 286 kB in 2s (184 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/circos_0.69.9+dfsg-2.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/circos-IGFfb3/circos-0.69.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/circos-IGFfb3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [617 B] Get:5 copy:/<>/apt_archive ./ Packages [649 B] Fetched 1875 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 75.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 0s (166 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-1 libsqlite3-0_3.46.0-1 libssl3t64_3.2.2-1 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: circos Binary: circos, fonts-circos-symbols Architecture: all Version: 0.69.9+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://circos.ca/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/circos Vcs-Git: https://salsa.debian.org/med-team/circos.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: circos deb science optional arch=all fonts-circos-symbols deb fonts optional arch=all Checksums-Sha1: dfcb94dad90df228b8de6052f80edcbc00666b0a 14289232 circos_0.69.9+dfsg.orig.tar.xz 1da5beb71d7125fb4d2de472a82bda6a3cf7bb00 9252 circos_0.69.9+dfsg-2.debian.tar.xz Checksums-Sha256: a4203ffd2659188fb65f977764f3ece9868f7e304a2696fe4eb1f7c3f8dde07e 14289232 circos_0.69.9+dfsg.orig.tar.xz 45d291847e66b9ddf0b314b8131b5108cec6e4e0b327ce1845dad599e9c3fd09 9252 circos_0.69.9+dfsg-2.debian.tar.xz Files: c432eb1e491dc48b3c99d3d871b07d89 14289232 circos_0.69.9+dfsg.orig.tar.xz d09091000137f767747840bd296641d3 9252 circos_0.69.9+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7d/aoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGQmBAAi7ZIfmC4hiO6am9VLz859mwrNS/1+sXE O3/98oLbuoXTvntW13gRH8N8AF35W2jo1wF7GrOwcxOUfF1+SduIG1T9b/vIo9Tg Qm/IJ4N4ffMSTaLO8Z00UYTTkhm2AaQ+LiijnEHZMSx1hiClT3luCFRD/LmjU0h/ hP/eRl5tyXgVDC/wKS87FcuEw+mhbT/Nrw3NHToZkeXVBd3MA4l2oNlVpTZdUXh5 49ZIEFZ69ks6ht0lkVSpJydJD7aTTRw9SbMIicn/vXyqGnNS/jmbdF1CHgo3I4Qe Fe3qJ/vIL7a5cLYwk4FHmP+qVb5FN6Bl5w87fhIV9WDeRAkqBkD7kU2R9YMjBpnB TTY3d4vTjTTdVKzDIW0PPenQ1XXFdv6Li0oirFSUZfPP5gMrExmotQOivY4l8QhF FWVCW2wdtYwTEwwAkfXiPJnjQx9+93nyElqTymLukPjTMBPppiXkJtvKnE6yqmT+ 8ZrR8y2Nx9PfUFVr8eV40I1g22fqmhzMv5NJ3ZXSGRdRVS72JHtgg/SS5iEvGDXO npXVCEZnSaihHJeWI3mu/XCL68u4FQZ2qU8IM6YLMwG+yeXHmNrWBe59VTnXGGvw J+KZsJUvAM5viMHv9WNVmaNJLzVPxA1wk3zBordMQVMccoi3YWpm3AzVv/rnWAMB LwcofPFoyHE= =hcYQ -----END PGP SIGNATURE----- gpgv: Signature made Mon Jun 8 08:58:18 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./circos_0.69.9+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting circos in /<> dpkg-source: info: unpacking circos_0.69.9+dfsg.orig.tar.xz dpkg-source: info: unpacking circos_0.69.9+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_ttf_fonts dpkg-source: info: applying configpath_add_etc dpkg-source: info: applying fix_examples dpkg-source: info: applying fix_manpage dpkg-source: info: applying fix_pod_syntax.patch dpkg-source: info: applying fix_config_path.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network circos_0.69.9+dfsg-2 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network circos_0.69.9+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-1d6e8af3-5eaa-48fe-b12f-ad4627e10f9d SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package circos dpkg-buildpackage: info: source version 0.69.9+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building circos using existing ./circos_0.69.9+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building circos in circos_0.69.9+dfsg-2.debian.tar.xz dpkg-source: info: building circos in circos_0.69.9+dfsg-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Update circos relative path to absolute debian paths find debian/circos -type f | xargs sed -i 's/include etc/include \/usr\/share\/circos\/etc/g' find debian/circos -type f | xargs sed -i 's/include fonts/include \/usr\/share\/circos\/fonts/g' find debian/circos -type f | xargs sed -i 's/include tiles/include \/usr\/share\/circos\/tiles/g' for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/<>' pod2man bin/circos > /<>/debian/circos/usr/share/man/man1/circos.1 make[1]: Leaving directory '/<>' dh_perl debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for cfgfile in debian/circos/usr/share/doc/circos/examples/etc/*.conf ; do \ rm ${cfgfile} ; \ dh_link etc/circos/`basename ${cfgfile}` usr/share/doc/circos/examples/etc/`basename ${cfgfile}` ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'circos' in '../circos_0.69.9+dfsg-2_all.deb'. dpkg-deb: building package 'fonts-circos-symbols' in '../fonts-circos-symbols_0.69.9+dfsg-2_all.deb'. dpkg-genbuildinfo -O../circos_0.69.9+dfsg-2_amd64.buildinfo dpkg-genchanges -O../circos_0.69.9+dfsg-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-03T18:10:21Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ circos_0.69.9+dfsg-2_amd64.changes: ----------------------------------- Format: 1.8 Date: Mon, 08 Jun 2020 10:46:41 +0200 Source: circos Binary: circos fonts-circos-symbols Architecture: source all Version: 0.69.9+dfsg-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts Closes: 962247 Changes: circos (0.69.9+dfsg-2) unstable; urgency=medium . * Fix config path and install example configuration as additional configuration files Closes: #962247 * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Install error message * Do not ship copy of example configuration files but rather symlink to the files that are now provided in /etc/circos Checksums-Sha1: cfd2004a64aa155c49c4c796fd837ed490680427 1169 circos_0.69.9+dfsg-2.dsc 1a2c3ad22cae0e8a1bbd34063f93cb6b95ed82ea 9260 circos_0.69.9+dfsg-2.debian.tar.xz 18cfb5a8183b3abb97b8bcbc7cc0022bac73aee6 14043280 circos_0.69.9+dfsg-2_all.deb dae7b718bd799e8df95c90c0b36fb8c1c8ccb3ee 5367 circos_0.69.9+dfsg-2_amd64.buildinfo 32ff83cd4b7f5f7cf4e62570d1bfe6f307a23ce1 46020 fonts-circos-symbols_0.69.9+dfsg-2_all.deb Checksums-Sha256: 39286d6e894ad428a39ab005cd968f1a543f8a88c522719060c0a8367621734c 1169 circos_0.69.9+dfsg-2.dsc bb67b8026d8915ef7d3dedabe5993ea646785b560472581cffd2c2526a1a2921 9260 circos_0.69.9+dfsg-2.debian.tar.xz f405abcb12b513624812a242d155c8f8386e8973b8ff7add442d77d573dad98d 14043280 circos_0.69.9+dfsg-2_all.deb f92a677f41537356476f419595be596489caa79b22b01d8e3f548ea622c366ec 5367 circos_0.69.9+dfsg-2_amd64.buildinfo da7318f60124ba866107a2b114a9864e472f745293d8f51816e61ee2b1ac3039 46020 fonts-circos-symbols_0.69.9+dfsg-2_all.deb Files: 075439468c2e044aee3aa745c4b4a83a 1169 science optional circos_0.69.9+dfsg-2.dsc c49ff22b3297839067637d6d34e5866e 9260 science optional circos_0.69.9+dfsg-2.debian.tar.xz bee42513bd6cf71a87cf6537b9ae7d13 14043280 science optional circos_0.69.9+dfsg-2_all.deb 249f68405613a4c69e219639f8496b79 5367 science optional circos_0.69.9+dfsg-2_amd64.buildinfo b36abf5cdf8306ca1a40b96409a2a4bf 46020 fonts optional fonts-circos-symbols_0.69.9+dfsg-2_all.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: circos Binary: circos fonts-circos-symbols Architecture: all source Version: 0.69.9+dfsg-2 Checksums-Md5: 075439468c2e044aee3aa745c4b4a83a 1169 circos_0.69.9+dfsg-2.dsc bee42513bd6cf71a87cf6537b9ae7d13 14043280 circos_0.69.9+dfsg-2_all.deb b36abf5cdf8306ca1a40b96409a2a4bf 46020 fonts-circos-symbols_0.69.9+dfsg-2_all.deb Checksums-Sha1: cfd2004a64aa155c49c4c796fd837ed490680427 1169 circos_0.69.9+dfsg-2.dsc 18cfb5a8183b3abb97b8bcbc7cc0022bac73aee6 14043280 circos_0.69.9+dfsg-2_all.deb 32ff83cd4b7f5f7cf4e62570d1bfe6f307a23ce1 46020 fonts-circos-symbols_0.69.9+dfsg-2_all.deb Checksums-Sha256: 39286d6e894ad428a39ab005cd968f1a543f8a88c522719060c0a8367621734c 1169 circos_0.69.9+dfsg-2.dsc f405abcb12b513624812a242d155c8f8386e8973b8ff7add442d77d573dad98d 14043280 circos_0.69.9+dfsg-2_all.deb da7318f60124ba866107a2b114a9864e472f745293d8f51816e61ee2b1ac3039 46020 fonts-circos-symbols_0.69.9+dfsg-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 03 Aug 2024 18:10:20 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.2.2-1), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1591606001" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ circos_0.69.9+dfsg-2_all.deb ---------------------------- new Debian package, version 2.0. size 14043280 bytes: control archive=5840 bytes. 1498 bytes, 50 lines conffiles 1129 bytes, 17 lines control 18346 bytes, 210 lines md5sums Package: circos Version: 0.69.9+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 65108 Depends: perl:any, fonts-circos-symbols, fonts-cmu, libregexp-common-perl, libcarp-always-perl, libconfig-general-perl, libdata-dumper-simple-perl, libgd-gd2-perl, libgetopt-simple-perl, libmath-bezier-perl, libmath-round-perl, libparams-validate-perl, libreadonly-perl, libset-intspan-perl, liblist-allutils-perl, libfile-basedir-perl, libmath-bigint-perl, libmath-vec-perl, libio-all-perl, libmath-vecstat-perl, libgraphics-colorobject-perl, libtext-format-perl, libfont-ttf-perl, libclone-perl, libstatistics-basic-perl, libsvg-perl Recommends: circos-tools Section: science Priority: optional Homepage: http://circos.ca/ Description: plotter for visualizing data Circos visualizes data in a circular layout — ideal for exploring relationships between objects or positions, and creating highly informative publication-quality graphics. . This package provides the Circos plotting engine, which is command-line driven (like gnuplot) and fully scriptable. drwxr-xr-x root/root 0 2020-06-08 08:46 ./ drwxr-xr-x root/root 0 2020-06-08 08:46 ./etc/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./etc/circos/ -rw-r--r-- root/root 1706 2020-06-08 08:46 ./etc/circos/BREWER -rw-r--r-- root/root 5396 2020-06-08 08:46 ./etc/circos/README -rw-r--r-- root/root 20 2020-06-08 08:46 ./etc/circos/background.black.conf -rw-r--r-- root/root 19 2020-06-08 08:46 ./etc/circos/background.white.conf -rw-r--r-- root/root 131869 2020-06-08 08:46 ./etc/circos/brewer.all.conf -rw-r--r-- root/root 262 2020-06-08 08:46 ./etc/circos/brewer.conf -rw-r--r-- root/root 5100 2020-06-08 08:46 ./etc/circos/circos.conf -rw-r--r-- root/root 99398 2020-06-08 08:46 ./etc/circos/colors.brewer.conf -rw-r--r-- root/root 3996 2020-06-08 08:46 ./etc/circos/colors.conf -rw-r--r-- root/root 15138 2020-06-08 08:46 ./etc/circos/colors.hsv.conf -rw-r--r-- root/root 5957 2020-06-08 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size 46020 bytes: control archive=836 bytes. 578 bytes, 16 lines control 499 bytes, 6 lines md5sums Package: fonts-circos-symbols Source: circos Version: 0.69.9+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 74 Section: fonts Priority: optional Multi-Arch: foreign Homepage: http://circos.ca/ Description: plotter for visualizing data - standard fonts Circos visualizes data in a circular layout — ideal for exploring relationships between objects or positions, and creating highly informative publication-quality graphics. . This package provides a set of fonts used by default with Circos. drwxr-xr-x root/root 0 2020-06-08 08:46 ./ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/circos/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/circos/fonts/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/circos/fonts/symbols/ -rw-r--r-- root/root 22883 2017-06-04 01:05 ./usr/share/circos/fonts/symbols/circossymbols.fog -rw-r--r-- root/root 4460 2017-06-04 01:05 ./usr/share/circos/fonts/symbols/circossymbols.otf -rw-r--r-- root/root 16673 2017-06-04 01:05 ./usr/share/circos/fonts/symbols/circossymbols.png drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-06-08 08:46 ./usr/share/doc/fonts-circos-symbols/ -rw-r--r-- root/root 687 2020-06-08 08:46 ./usr/share/doc/fonts-circos-symbols/changelog.Debian.gz -rw-r--r-- root/root 16267 2017-11-13 00:00 ./usr/share/doc/fonts-circos-symbols/changelog.gz -rw-r--r-- root/root 2179 2020-06-08 08:46 ./usr/share/doc/fonts-circos-symbols/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 146344 Build-Time: 47 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/circos_0.69.9+dfsg-2.dsc Machine Architecture: amd64 Package: circos Package-Time: 57 Source-Version: 0.69.9+dfsg-2 Space: 146344 Status: successful Version: 0.69.9+dfsg-2 -------------------------------------------------------------------------------- Finished at 2024-08-03T18:10:21Z Build needed 00:00:57, 146344k disk space