sbuild (Debian sbuild) 0.85.9 (29 May 2024) on carme.larted.org.uk +==============================================================================+ | circos-tools 0.23-1 (amd64) Mon, 03 Jun 2024 00:35:05 +0000 | +==============================================================================+ Package: circos-tools Version: 0.23-1 Source Version: 0.23-1 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-eee6deb0-7ddb-4150-b535-a4c74231b490' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup circos-tools_0.23-1 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup circos-tools_0.23-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/circos-tools-s9h5Hy/resolver-WukkL0' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Hit:2 http://localhost:3142/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3039 B] Hit:3 http://localhost:3142/debian sid InRelease Get:4 file:/srv/reprepro perl-5.40/main amd64 Packages [598 kB] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/circos-tools_0.23-1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/circos-tools-s9h5Hy/circos-tools-0.23' with '<>' I: NOTICE: Log filtering will replace 'build/circos-tools-s9h5Hy' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), build-essential, fakeroot Filtered Build-Depends: debhelper (>= 11~), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [612 B] Get:5 copy:/<>/apt_archive ./ Packages [644 B] Fetched 1865 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After this operation, 73.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [876 B] Get:2 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get:9 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.1-7 [95.9 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:11 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:12 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://localhost:3142/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://localhost:3142/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get:17 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:24 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:28 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://localhost:3142/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:32 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.34-1 [74.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.1 MB in 0s (151 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 21779 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40.1-7) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.34-1) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-25 gcc-13_13.2.0-25 libc6-dev_2.38-12 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 linux-libc-dev_6.8.12-1 Package versions: adduser_3.137 apt_2.9.4 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.2 base-passwd_3.6.3 bash_5.2.21-2+b1 binutils_2.42-4 binutils-common_2.42-4 binutils-x86-64-linux-gnu_2.42-4 bsdextrautils_2.40.1-7 bsdutils_1:2.40.1-7 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:13.2.0-7 cpp-13_13.2.0-25 cpp-13-x86-64-linux-gnu_13.2.0-25 cpp-x86-64-linux-gnu_4:13.2.0-7 dash_0.5.12-8 debconf_1.5.86 debhelper_13.15.3 debian-archive-keyring_2023.4 debianutils_5.17 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-7 dpkg_1.22.6 dpkg-dev_1.22.6 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.34-1 file_1:5.45-3 findutils_4.9.0-6 g++_4:13.2.0-7 g++-13_13.2.0-25 g++-13-x86-64-linux-gnu_13.2.0-25 g++-x86-64-linux-gnu_4:13.2.0-7 gcc_4:13.2.0-7 gcc-13_13.2.0-25 gcc-13-base_13.2.0-25 gcc-13-x86-64-linux-gnu_13.2.0-25 gcc-14-base_14.1.0-1 gcc-x86-64-linux-gnu_4:13.2.0-7 gettext_0.21-14+b1 gettext-base_0.21-14+b1 gnupg_2.2.43-7 gnupg-l10n_2.2.43-7 gnupg-utils_2.2.43-7 gpg_2.2.43-7 gpg-agent_2.2.43-7 gpg-wks-client_2.2.43-7 gpgconf_2.2.43-7 gpgsm_2.2.43-7 gpgv_2.2.43-7 grep_3.11-4 groff-base_1.23.0-4 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.4 libarchive-zip-perl_1.68-1 libasan8_14.1.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.1.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1 libaudit1_1:3.1.2-2.1 libbinutils_2.42-4 libblkid1_2.40.1-7 libbz2-1.0_1.0.8-5.1 libc-bin_2.38-12 libc-dev-bin_2.38-12 libc-l10n_2.38-12 libc6_2.38-12 libc6-dev_2.38-12 libcap-ng0_0.8.5-1 libcap2_1:2.66-5 libcc1-0_14.1.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42-4 libctf0_2.42-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.15.3 libdpkg-perl_1.22.6 libeatmydata1_131-2 libelf1t64_0.191-1+b1 libfakeroot_1.34-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.2.0-25 libgcc-s1_14.1.0-1 libgcrypt20_1.10.3-3 libgdbm-compat4t64_1.23-5.1+b1 libgdbm6t64_1.23-5.1+b1 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.5-4 libgomp1_14.1.0-1 libgpg-error0_1.49-2 libgprofng0_2.42-4 libhogweed6t64_3.9.1-2.2 libhwasan0_14.1.0-1 libicu72_72.1-4+b1 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.1.0-1 libjansson4_2.14-2+b2 libksba8_1.6.6-1 libldap-2.5-0_2.5.17+dfsg-1+b1 liblsan0_14.1.0-1 liblz4-1_1.9.4-2 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.1-7 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.9.1-2.2 libnpth0t64_1.6-3.1 libp11-kit0_0.25.3-5 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0~rc1-1 libpipeline1_1.5.7-2 libquadmath0_14.1.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1 libselinux1_3.5-2+b2 libsemanage-common_3.5-1 libsemanage2_3.5-1+b3 libsepol2_3.5-2+b1 libsframe1_2.42-4 libsmartcols1_2.40.1-7 libsqlite3-0_3.46.0-1 libssl3t64_3.2.1-3 libstdc++-13-dev_13.2.0-25 libstdc++6_14.1.0-1 libsystemd0_256~rc3-7 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.1.0-1 libubsan1_14.1.0-1 libuchardet0_0.0.8-1+b1 libudev1_256~rc3-7 libunistring5_1.2-1 libuuid1_2.40.1-7 libxml2_2.12.7+dfsg-2 libxxhash0_0.8.2-2+b1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.8.12-1 locales-all_2.38-12 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.40.0~rc1-1 perl-base_5.40.0~rc1-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0~rc1-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.09-1 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.1-7 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: circos-tools Binary: circos-tools Architecture: all Version: 0.23-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://circos.ca/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/circos-tools Vcs-Git: https://salsa.debian.org/med-team/circos-tools.git Build-Depends: debhelper (>= 11~) Package-List: circos-tools deb science optional arch=all Checksums-Sha1: a70269faa431a37d40073fcd1f23fac8732de7c3 23364069 circos-tools_0.23.orig.tar.gz 4b20b030f88636a7dbd50b38a7718cc81a2abb0c 2600 circos-tools_0.23-1.debian.tar.xz Checksums-Sha256: 0c5404ff88f621ce945fd6bf770cb56872f79c4a3a36715cb7dd3ed2280e8bfe 23364069 circos-tools_0.23.orig.tar.gz 6c71a150cb5002e0a6ec48bdbca9282f2a85aba5254cf776259be61c683141e5 2600 circos-tools_0.23-1.debian.tar.xz Files: 9d009d7f782d1d6f6720e48209c99eed 23364069 circos-tools_0.23.orig.tar.gz 63aa39b56c8c170f65151a25138ab432 2600 circos-tools_0.23-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvVV/gRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEzSRAAkvNjFUC86bNdNKx877e+Rrtl91qgHOPs nzeF25Qk0P1YYj65AudxgByaZv1ydOooIuJ5WJIJGa0LAoICGTULR5CbEupx6zqU Vy5OCVD7jLFK7zUo7bPk9FsGOP2vnxaEEqj21sWoVmAh73zo7GAmJjna2BC4Wmqw /T4PEUubblh3IUo0l78J0f9HbUUxaaRmZjEC5aYrkkj92TsxfNujGgrYVHqy1lOG vL4SkDUB/HSeo5HOzmShJO8eu0bpTC3+zZ+CsPsXrEiQRS1IQv4u4kVawxuK2YmX cAuPj1P1GLC6fQTNc6ylleC6S3goCBnwxNV4zgs9ZAwHIm5wVc3UUcajotqVZKq9 t9dyL4P8F9DY3o2/owKbKiys0yXncbLkt0Kgwc62Aa9vxYQmZIbfmQ1ZM+6j/QjP EcyE3DSfoVXDS8Q4n8WVX1s9rKgXZYH203iAJFVrWns2JBOrKmEtFQP2SgvjBHSg 4tzsdGaYZ8Zby+ClpiCzMDJcXx/zFDOT7ZUSnmoB6FeEaaVDBSnZYleNQCVachKh WJD3xKOAjChFnuMw0V4waouMsDN4CHtiGgMIk+IUtklFZN9R6Bt6cCEsAGY/jg+O Rx1++06vbXwPPSjvNS9q65i37YH3QeCEeTnL7/zQDctxqEd1XtKB3yIpZnfnmH1E 55PWNDNykjA= =LGeC -----END PGP SIGNATURE----- gpgv: Signature made Sun Oct 28 06:32:24 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./circos-tools_0.23-1.dsc: no acceptable signature found dpkg-source: info: extracting circos-tools in /<> dpkg-source: info: unpacking circos-tools_0.23.orig.tar.gz dpkg-source: info: unpacking circos-tools_0.23-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network circos-tools_0.23-1 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network circos-tools_0.23-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-eee6deb0-7ddb-4150-b535-a4c74231b490 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package circos-tools dpkg-buildpackage: info: source version 0.23-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building circos-tools using existing ./circos-tools_0.23.orig.tar.gz dpkg-source: warning: ignoring deletion of file tools/clustal2link/1/#README#, use --include-removal to override dpkg-source: info: building circos-tools in circos-tools_0.23-1.debian.tar.xz dpkg-source: info: building circos-tools in circos-tools_0.23-1.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install --destdir=debian/circos-tools/ debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install # Update circos relative path to absolute debian paths find debian/circos-tools -type f \ | xargs sed -i \ -e 's,include etc,include /usr/share/circos/etc,g' \ -e 's,include fonts,include /usr/share/circos/fonts,g' \ -e 's,include svg,include /usr/share/circos/svg,g' \ -e 's,include tiles,include /usr/share/circos/tiles,g' \ -e 's,include data,include /var/lib/circos/data,g' \ -e 's,home/martink/bin/perl,usr/bin/perl,g' \ -e 's,!/bin/env,!/usr/bin/env,g' for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'circos-tools' in '../circos-tools_0.23-1_all.deb'. dpkg-genbuildinfo -O../circos-tools_0.23-1_amd64.buildinfo dpkg-genchanges -O../circos-tools_0.23-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2024-06-03T00:35:36Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ circos-tools_0.23-1_amd64.changes: ---------------------------------- Format: 1.8 Date: Sun, 28 Oct 2018 07:28:13 +0100 Source: circos-tools Binary: circos-tools Architecture: source all Version: 0.23-1 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.23-1) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/rules * Fix Perl interpreter path Checksums-Sha1: 7bc560548e020b3099ed43e7156d5be95a5d1afc 1086 circos-tools_0.23-1.dsc a70269faa431a37d40073fcd1f23fac8732de7c3 23364069 circos-tools_0.23.orig.tar.gz 819945179db135c0ab95c036c5a3d33f31a67d1c 2608 circos-tools_0.23-1.debian.tar.xz c3224eb185523b3079c8b6b9f650ec0a958a7336 18654768 circos-tools_0.23-1_all.deb 105cff2ecba98028d9f1ac4c9bbf9654a98ae7d0 4913 circos-tools_0.23-1_amd64.buildinfo Checksums-Sha256: 08dac2361e83664d5333976b9b2a580c9b7a7d50b942b469a85e1813a9c52631 1086 circos-tools_0.23-1.dsc 0c5404ff88f621ce945fd6bf770cb56872f79c4a3a36715cb7dd3ed2280e8bfe 23364069 circos-tools_0.23.orig.tar.gz 3f7aeb0ee706bcfc0a6e2c527d34fed583c1009fbddcef9aa6e75104e140b607 2608 circos-tools_0.23-1.debian.tar.xz d1a6e6eb9ee6cca8d953f68617569597b66c6de0e5ee825185a763ee068fd541 18654768 circos-tools_0.23-1_all.deb 5689fa766e0b051f3aed1ffd7fcebee58e7a715579caa3ad11a2c2385a4dbd26 4913 circos-tools_0.23-1_amd64.buildinfo Files: 3dbb7500ee167f390743bc39592b67cb 1086 science optional circos-tools_0.23-1.dsc 9d009d7f782d1d6f6720e48209c99eed 23364069 science optional circos-tools_0.23.orig.tar.gz 885a5a91917feaa3fd71cb71000078c6 2608 science optional circos-tools_0.23-1.debian.tar.xz 24195e5f60f1de86929228987251f2b3 18654768 science optional circos-tools_0.23-1_all.deb 7a428983da3a361678e694f6c274927a 4913 science optional circos-tools_0.23-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: circos-tools Binary: circos-tools Architecture: all source Version: 0.23-1 Checksums-Md5: 3dbb7500ee167f390743bc39592b67cb 1086 circos-tools_0.23-1.dsc 24195e5f60f1de86929228987251f2b3 18654768 circos-tools_0.23-1_all.deb Checksums-Sha1: 7bc560548e020b3099ed43e7156d5be95a5d1afc 1086 circos-tools_0.23-1.dsc c3224eb185523b3079c8b6b9f650ec0a958a7336 18654768 circos-tools_0.23-1_all.deb Checksums-Sha256: 08dac2361e83664d5333976b9b2a580c9b7a7d50b942b469a85e1813a9c52631 1086 circos-tools_0.23-1.dsc d1a6e6eb9ee6cca8d953f68617569597b66c6de0e5ee825185a763ee068fd541 18654768 circos-tools_0.23-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 03 Jun 2024 00:35:35 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.2), base-passwd (= 3.6.3), bash (= 5.2.21-2+b1), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40.1-7), bsdutils (= 1:2.40.1-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-25), cpp-13-x86-64-linux-gnu (= 13.2.0-25), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-8), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-6), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-25), g++-13-x86-64-linux-gnu (= 13.2.0-25), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-25), gcc-13-base (= 13.2.0-25), gcc-13-x86-64-linux-gnu (= 13.2.0-25), gcc-14-base (= 14.1.0-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-4), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.1.0-1), libatomic1 (= 14.1.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40.1-7), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.38-12), libc-dev-bin (= 2.38-12), libc6 (= 2.38-12), libc6-dev (= 2.38-12), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.1.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.2.0-25), libgcc-s1 (= 14.1.0-1), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.1.0-1), libgprofng0 (= 2.42-4), libhwasan0 (= 14.1.0-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14.1.0-1), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.1.0-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.1-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0~rc1-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.1.0-1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40.1-7), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-25), libstdc++6 (= 14.1.0-1), libsystemd0 (= 256~rc3-7), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.1.0-1), libubsan1 (= 14.1.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256~rc3-7), libunistring5 (= 1.2-1), libuuid1 (= 2.40.1-7), libxml2 (= 2.12.7+dfsg-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.12-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0~rc1-1), perl-base (= 5.40.0~rc1-1), perl-modules-5.40 (= 5.40.0~rc1-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.1-7), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1540708093" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ circos-tools_0.23-1_all.deb --------------------------- new Debian package, version 2.0. size 18654768 bytes: control archive=6440 bytes. 702 bytes, 18 lines control 25049 bytes, 281 lines md5sums Package: circos-tools Version: 0.23-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 38501 Depends: perl:any, circos Section: science Priority: optional Homepage: http://circos.ca/ Description: plotter for visualizing data - helper utilities Circos visualizes data in a circular layout — ideal for exploring relationships between objects or positions, and creating highly informative publication-quality graphics. . This package provides a set of tools to help process your data: binlinks, bundlelinks, categoryviewer, colorinterpolate, filterlinks, maketutorialimages, orderchr, randomlinks, resample, and tableviewer. drwxr-xr-x root/root 0 2018-10-28 06:28 ./ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/circos/ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/circos/tools/ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/ drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/bin/ -rwxr-xr-x root/root 15336 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/bin/binlinks drwxr-xr-x root/root 0 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/ -rw-r--r-- root/root 110 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/filterlinks.conf -rw-r--r-- root/root 22975 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/highlight.0.txt -rw-r--r-- root/root 22941 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/highlight.1.txt -rw-r--r-- root/root 78365 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.0.txt -rw-r--r-- root/root 46064 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.1.txt -rw-r--r-- root/root 108791 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.3.txt -rw-r--r-- root/root 76392 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.4.txt -rw-r--r-- root/root 126972 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.5.txt -rw-r--r-- root/root 20693 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/histogram.6.txt -rw-r--r-- root/root 57 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/inverted.txt -rw-r--r-- root/root 40100 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/karyotype.txt -rw-r--r-- root/root 294 2018-10-28 06:28 ./usr/share/circos/tools/binlinks/data/links.1line.txt -rw-r--r-- 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119892 Status: successful Version: 0.23-1 -------------------------------------------------------------------------------- Finished at 2024-06-03T00:35:36Z Build needed 00:00:31, 119892k disk space