sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | chip-seq 1.5.5-3 (amd64) Sat, 14 Sep 2024 23:26:31 +0000 | +==============================================================================+ Package: chip-seq Version: 1.5.5-3 Source Version: 1.5.5-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-541c6be2-0757-4255-99fb-b320c05776de' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup chip-seq_1.5.5-3 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup chip-seq_1.5.5-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/chip-seq-hyS5TM/resolver-p80Rv1' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://deb.debian.org/debian unstable InRelease [202 kB] Get:3 http://localhost:3142/debian sid InRelease [202 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-09-14-2006.11-F-2024-09-14-2006.11.pdiff [17.4 kB] Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2024-09-14-2006.11-F-2024-09-14-2006.11.pdiff [17.4 kB] Get:7 http://localhost:3142/debian sid/main Sources T-2024-09-14-2006.11-F-2024-09-14-2006.11.pdiff [21.2 kB] Get:7 http://localhost:3142/debian sid/main Sources T-2024-09-14-2006.11-F-2024-09-14-2006.11.pdiff [21.2 kB] Fetched 570 kB in 2s (273 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/chip-seq_1.5.5-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/chip-seq-hyS5TM/chip-seq-1.5.5' with '<>' I: NOTICE: Log filtering will replace 'build/chip-seq-hyS5TM' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [617 B] Get:5 copy:/<>/apt_archive ./ Packages [649 B] Fetched 1875 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After this operation, 75.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-8 [97.3 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.36-1 [75.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.9 MB in 0s (169 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 22986 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../31-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.40-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-4 dpkg-dev_1.22.11 g++-13_13.3.0-6 g++-14_14.2.0-4 gcc-13_13.3.0-6 gcc-14_14.2.0-4 libc6-dev_2.40-2 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 linux-libc-dev_6.10.9-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-4 binutils-common_2.43.1-4 binutils-x86-64-linux-gnu_2.43.1-4 bsdextrautils_2.40.2-8 bsdutils_1:2.40.2-8 build-essential_12.10 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-6 cpp-13-x86-64-linux-gnu_13.3.0-6 cpp-14_14.2.0-4 cpp-14-x86-64-linux-gnu_14.2.0-4 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.1.0-2 g++-13_13.3.0-6 g++-13-x86-64-linux-gnu_13.3.0-6 g++-14_14.2.0-4 g++-14-x86-64-linux-gnu_14.2.0-4 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-6 gcc-13-base_13.3.0-6 gcc-13-x86-64-linux-gnu_13.3.0-6 gcc-14_14.2.0-4 gcc-14-base_14.2.0-4 gcc-14-x86-64-linux-gnu_14.2.0-4 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8+b1 gpg_2.2.43-8+b1 gpg-agent_2.2.43-8+b1 gpg-wks-client_2.2.43-8+b1 gpgconf_2.2.43-8+b1 gpgsm_2.2.43-8+b1 gpgv_2.2.43-8+b1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-4 libassuan0_2.5.6-1+b1 libassuan9_3.0.1-2 libatomic1_14.2.0-4 libattr1_1:2.5.2-1 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-4 libblkid1_2.40.2-8 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-6 libc-bin_2.40-2 libc-dev-bin_2.40-2 libc-l10n_2.40-2 libc6_2.40-2 libc6-dev_2.40-2 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-4 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-4 libctf0_2.43.1-4 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-6 libgcc-14-dev_14.2.0-4 libgcc-s1_14.2.0-4 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-4 libgpg-error0_1.50-3 libgprofng0_2.43.1-4 libhogweed6t64_3.10-1 libhwasan0_14.2.0-4 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-4 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-3+b1 liblsan0_14.2.0-4 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-8 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-5 libpipeline1_1.5.8-1 libquadmath0_14.2.0-4 libreadline8t64_8.2-5 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-4 libsmartcols1_2.40.2-8 libsqlite3-0_3.46.1-1 libssl3t64_3.3.2-1 libstdc++-13-dev_13.3.0-6 libstdc++-14-dev_14.2.0-4 libstdc++6_14.2.0-4 libsystemd0_256.6-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-4 libubsan1_14.2.0-4 libuchardet0_0.0.8-1+b1 libudev1_256.6-1 libunistring5_1.2-1 libuuid1_2.40.2-8 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.10.9-1 locales-all_2.40-2 login_1:4.16.0-2+really2.40.2-8 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-5 perl-base_5.40.0-5 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-5 pinentry-curses_1.2.1-4+b1 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-8 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: chip-seq Binary: chip-seq, chip-seq-data Architecture: any all Version: 1.5.5-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://ccg.epfl.ch//chipseq Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/chip-seq Vcs-Git: https://salsa.debian.org/med-team/chip-seq.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Package-List: chip-seq deb science optional arch=any chip-seq-data deb science optional arch=all Checksums-Sha1: c1d0fe6c413dbfcfc248a9ed2f49838a4b1384ac 5257567 chip-seq_1.5.5.orig.tar.gz 08d2558d0740ecc3cf754e4effad0821503c13fc 8840 chip-seq_1.5.5-3.debian.tar.xz Checksums-Sha256: ce432340e879a629001ecc4c14886e974ec3caea1b723e41f1a7a1a431a2a035 5257567 chip-seq_1.5.5.orig.tar.gz 654d5dadedc5c1fa9e46f65a6ffdc1fa1571715e80f4c1b6e5908a63047e20b1 8840 chip-seq_1.5.5-3.debian.tar.xz Files: 4e08c0558e2304415c766fa0bd3cbebd 5257567 chip-seq_1.5.5.orig.tar.gz 1c60740cc4de88131a34ce223804e7d5 8840 chip-seq_1.5.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6AfK0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH9pw//Q+k06DReYj+ySxxsnc8PjyhPAOXtBVJQ Wfl8dGzJBxSDbhoVk8D3U2kPnNkZ93NxJW04YE1VqyzHxWwAYRfLDd/0bR+rTnCy G72eBesSbwHq3IA2UA/aSaLJYhxHNBapKRZE4ecHRCkUqxEME3qRRhDK6t+YBzhW kFrKLcJ+E6urKBUZtVjJuvPxhVNkFf6yFsnblmXe6rSr6NmM6iDUe83yM474vL0s nabkrmIV79lSVnUKzJfmnDP9/4jlgJDiCYk6Zf4SsliTualE2QoWxHVemBODz74m BM6XEzVco47aUHrwgPIQzE1CJaPH4fbm5yfPZrIue4JjnBBCbZPjSALzi882+I0G qzE4GV7Xh+wByeN+H8BNnw3q7v1Shlhb6+rTkPHiA5Vu4oCfDuohdYGrqpyv4RM8 tR+E+MEHsZNxATRFT9Q/yK8tmhZLkwsruj1nEjTTGMK+1HSXERpkOHYw2uDh6BWj 2+MaQdMPgrpoWcf3KZNH6fjzxE4NiuEmVpnB50Y4SAnO7qiOw6sa6tEvJIFxNsOu RvKXzfqJ1kp9y60rugsFZA4xBuVAevhhNMADknkWL9jj5UWrJU7O4c+dtqcOhfZI FfMUFJY+A6AX7XdeaiOqvGCShFZ1HoxLKzxZjcQXfjOTf34D24pcOabTGTguQaJH AeXBodqO+88= =qQRt -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 29 10:47:09 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./chip-seq_1.5.5-3.dsc: no acceptable signature found dpkg-source: info: extracting chip-seq in /<> dpkg-source: info: unpacking chip-seq_1.5.5.orig.tar.gz dpkg-source: info: unpacking chip-seq_1.5.5-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying data_location.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network chip-seq_1.5.5-3 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network chip-seq_1.5.5-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-541c6be2-0757-4255-99fb-b320c05776de SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package chip-seq dpkg-buildpackage: info: source version 1.5.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/<>' rm -rf chipcor chipextract chippart chippeak chipcenter chipscore tools/compactsga tools/countsga tools/featreplace tools/filter_counts tools/bed2sga tools/bed2bed_display tools/sga2bed tools/sga2wig *.o *~ make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building chip-seq using existing ./chip-seq_1.5.5.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building chip-seq in chip-seq_1.5.5-3.debian.tar.xz dpkg-source: info: building chip-seq in chip-seq_1.5.5-3.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipcor chipcor.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipextract chipextract.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chippart chippart.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hashtable.o hashtable.c hashtable.c: In function ‘MurmurHash3_x86_32’: hashtable.c:539:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 539 | case 3: k1 ^= tail[2] << 16; | ~~~^~~~~~~~~~~~~~~~ hashtable.c:540:3: note: here 540 | case 2: k1 ^= tail[1] << 8; | ^~~~ hashtable.c:540:14: warning: this statement may fall through [-Wimplicit-fallthrough=] 540 | case 2: k1 ^= tail[1] << 8; | ~~~^~~~~~~~~~~~~~~ hashtable.c:541:3: note: here 541 | case 1: k1 ^= tail[0]; | ^~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o chipscore chipscore.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/compactsga tools/compactsga.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/countsga tools/countsga.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/featreplace tools/featreplace.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -std=gnu99 -W -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -o tools/filter_counts tools/filter_counts.c gcc -o tools/bed2sga tools/bed2sga.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -o tools/bed2bed_display tools/bed2bed_display.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm tools/bed2bed_display.c: In function ‘main’: tools/bed2bed_display.c:564:7: warning: ‘__builtin_memcpy’ writing 6 bytes into a region of size 5 [-Wstringop-overflow=] 564 | strcpy(options.visibility, "dense"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tools/bed2bed_display.c:557:31: note: destination object of size 5 allocated by ‘malloc’ 557 | if ((options.visibility = malloc(5 * sizeof(char))) == NULL) { | ^~~~~~~~~~~~~~~~~~~~~~~~ gcc -o tools/sga2bed tools/sga2bed.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -o tools/sga2wig tools/sga2wig.c hashtable.o -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm gcc -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm -o chippeak chippeak.c hashtable.o gcc -Wl,-z,relro -O3 -std=gnu99 -fPIC -lm -o chipcenter chipcenter.c hashtable.o make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j2 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/bin mv chipcor chipextract chippart chippeak chipcenter chipscore tools/compactsga tools/countsga tools/featreplace tools/filter_counts tools/bed2sga tools/bed2bed_display tools/sga2bed tools/sga2wig /<>/debian/tmp/usr/bin cp -p tools/check_bed.pl tools/chr_replace_sga.pl tools/eland2sga.pl tools/fps2sga.pl tools/gff2sga.pl tools/partit2bed.pl tools/partit2gff.pl tools/sga2fps.pl tools/sga2gff.pl /<>/debian/tmp/usr/bin make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for perlscript in `grep -lR '#!/usr/local/bin/perl' debian/*/usr` ; do \ sed -i '1s+#!/usr/local/bin/perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman --language=C make[1]: Leaving directory '/<>' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/<>' dh_fixperms -i find debian/chip-seq-data/usr/share/chip-seq/ -type f -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_fixperms -Nchip-seq-data dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package chip-seq: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package chip-seq: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'chip-seq-data' in '../chip-seq-data_1.5.5-3_all.deb'. dpkg-deb: building package 'chip-seq' in '../chip-seq_1.5.5-3_amd64.deb'. dpkg-deb: building package 'chip-seq-dbgsym' in '../chip-seq-dbgsym_1.5.5-3_amd64.deb'. dpkg-genbuildinfo -O../chip-seq_1.5.5-3_amd64.buildinfo dpkg-genchanges -O../chip-seq_1.5.5-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-09-14T23:27:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ chip-seq_1.5.5-3_amd64.changes: ------------------------------- Format: 1.8 Date: Sun, 29 Mar 2020 12:44:42 +0200 Source: chip-seq Binary: chip-seq chip-seq-data chip-seq-dbgsym Architecture: source all amd64 Version: 1.5.5-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: chip-seq - tools performing common ChIP-Seq data analysis tasks chip-seq-data - tools performing common ChIP-Seq data analysis tasks (data) Changes: chip-seq (1.5.5-3) unstable; urgency=medium . * Fix arch only build Checksums-Sha1: e1518775678e26dfe5550716bfe576276e9f1dd0 1112 chip-seq_1.5.5-3.dsc a1e0e1418da755d7e979679942588839f701f4da 8848 chip-seq_1.5.5-3.debian.tar.xz 747b5125f5190f61437a00fdf2be5ea1b4616363 3003644 chip-seq-data_1.5.5-3_all.deb c40df5c085c12d2658ba01965f07d9af01689c17 113612 chip-seq-dbgsym_1.5.5-3_amd64.deb ec26e55349e2589c519189a5e9d898415f2003b2 5529 chip-seq_1.5.5-3_amd64.buildinfo 3159576e62b8a739ef04e1e69d62246de0f73022 100576 chip-seq_1.5.5-3_amd64.deb Checksums-Sha256: a3376c9b8f6634d9c90b319ababa2ffa42d69ad0aabd4538c1cd47715e7d3833 1112 chip-seq_1.5.5-3.dsc 81ca6d11ed16e5e798c26ef761ce37a72360fd15f8be1ec5f19e72722a9c846b 8848 chip-seq_1.5.5-3.debian.tar.xz f447726c1aeb4e7e74ab00ab9d244cb7e881555aae7a761538fab52d013383ff 3003644 chip-seq-data_1.5.5-3_all.deb 1a866679be1828b0b0bacad3b0e425383204da7bfffaf62fc4f105edc6008b45 113612 chip-seq-dbgsym_1.5.5-3_amd64.deb 43323a69b2de62358d1dbed8020515c0bceaabff8132f829b5ba07e15eaee2db 5529 chip-seq_1.5.5-3_amd64.buildinfo f30e442e6e076c03ad820b1cf5f74550fb79e5f5548ef2b15559601750ccbe1e 100576 chip-seq_1.5.5-3_amd64.deb Files: bf45a950cae371560945ada8a3fdcaf1 1112 science optional chip-seq_1.5.5-3.dsc 9379d9d7638216c465fcd2f966f0ffb4 8848 science optional chip-seq_1.5.5-3.debian.tar.xz ac9e1ca4ebdfa04beacaad8180d17898 3003644 science optional chip-seq-data_1.5.5-3_all.deb 9266fe9a3c024c8f72a082ba831b73cd 113612 debug optional chip-seq-dbgsym_1.5.5-3_amd64.deb 36155105a1c4b760cca37c9121371c11 5529 science optional chip-seq_1.5.5-3_amd64.buildinfo 011fcd546845c6ad4af7d2f6d15ce795 100576 science optional chip-seq_1.5.5-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: chip-seq Binary: chip-seq chip-seq-data chip-seq-dbgsym Architecture: all amd64 source Version: 1.5.5-3 Checksums-Md5: bf45a950cae371560945ada8a3fdcaf1 1112 chip-seq_1.5.5-3.dsc ac9e1ca4ebdfa04beacaad8180d17898 3003644 chip-seq-data_1.5.5-3_all.deb 9266fe9a3c024c8f72a082ba831b73cd 113612 chip-seq-dbgsym_1.5.5-3_amd64.deb 011fcd546845c6ad4af7d2f6d15ce795 100576 chip-seq_1.5.5-3_amd64.deb Checksums-Sha1: e1518775678e26dfe5550716bfe576276e9f1dd0 1112 chip-seq_1.5.5-3.dsc 747b5125f5190f61437a00fdf2be5ea1b4616363 3003644 chip-seq-data_1.5.5-3_all.deb c40df5c085c12d2658ba01965f07d9af01689c17 113612 chip-seq-dbgsym_1.5.5-3_amd64.deb 3159576e62b8a739ef04e1e69d62246de0f73022 100576 chip-seq_1.5.5-3_amd64.deb Checksums-Sha256: a3376c9b8f6634d9c90b319ababa2ffa42d69ad0aabd4538c1cd47715e7d3833 1112 chip-seq_1.5.5-3.dsc f447726c1aeb4e7e74ab00ab9d244cb7e881555aae7a761538fab52d013383ff 3003644 chip-seq-data_1.5.5-3_all.deb 1a866679be1828b0b0bacad3b0e425383204da7bfffaf62fc4f105edc6008b45 113612 chip-seq-dbgsym_1.5.5-3_amd64.deb f30e442e6e076c03ad820b1cf5f74550fb79e5f5548ef2b15559601750ccbe1e 100576 chip-seq_1.5.5-3_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 14 Sep 2024 23:27:01 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-4), binutils-common (= 2.43.1-4), binutils-x86-64-linux-gnu (= 2.43.1-4), bsdextrautils (= 2.40.2-8), bsdutils (= 1:2.40.2-8), build-essential (= 12.10), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-6), cpp-13-x86-64-linux-gnu (= 13.3.0-6), cpp-14 (= 14.2.0-4), cpp-14-x86-64-linux-gnu (= 14.2.0-4), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-4), g++-14-x86-64-linux-gnu (= 14.2.0-4), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-6), gcc-13-base (= 13.3.0-6), gcc-13-x86-64-linux-gnu (= 13.3.0-6), gcc-14 (= 14.2.0-4), gcc-14-base (= 14.2.0-4), gcc-14-x86-64-linux-gnu (= 14.2.0-4), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-4), libatomic1 (= 14.2.0-4), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-4), libblkid1 (= 2.40.2-8), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-2), libc-dev-bin (= 2.40-2), libc6 (= 2.40-2), libc6-dev (= 2.40-2), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-4), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-4), libctf0 (= 2.43.1-4), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-6), libgcc-14-dev (= 14.2.0-4), libgcc-s1 (= 14.2.0-4), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-4), libgprofng0 (= 2.43.1-4), libhwasan0 (= 14.2.0-4), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-4), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-4), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-8), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-5), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-4), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-4), libsmartcols1 (= 2.40.2-8), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-4), libstdc++6 (= 14.2.0-4), libsystemd0 (= 256.6-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-4), libubsan1 (= 14.2.0-4), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.6-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-8), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.10.9-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-5), perl-base (= 5.40.0-5), perl-modules-5.40 (= 5.40.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-8), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1585478682" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ chip-seq-data_1.5.5-3_all.deb ----------------------------- new Debian package, version 2.0. size 3003644 bytes: control archive=1204 bytes. 1406 bytes, 31 lines control 350 bytes, 5 lines md5sums Package: chip-seq-data Source: chip-seq Version: 1.5.5-3 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 20237 Section: science Priority: optional Homepage: https://ccg.epfl.ch//chipseq Description: tools performing common ChIP-Seq data analysis tasks (data) The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks: . 1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore). . Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format. . This package contains the database files shipped with chip-seq. drwxr-xr-x root/root 0 2020-03-29 10:44 ./ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/share/ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/share/chip-seq/ -rw-r--r-- root/root 430415 2018-10-18 16:01 ./usr/share/chip-seq/chr_NC_gi -rw-r--r-- root/root 338664 2018-09-21 15:44 ./usr/share/chip-seq/chr_size -rw-r--r-- root/root 19942205 2018-09-21 15:44 ./usr/share/chip-seq/chro_idx.nstorage drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/share/doc/chip-seq-data/ -rw-r--r-- root/root 286 2020-03-29 10:44 ./usr/share/doc/chip-seq-data/changelog.Debian.gz -rw-r--r-- root/root 1111 2020-03-29 10:44 ./usr/share/doc/chip-seq-data/copyright chip-seq-dbgsym_1.5.5-3_amd64.deb --------------------------------- new Debian package, version 2.0. size 113612 bytes: control archive=1236 bytes. 907 bytes, 12 lines control 1569 bytes, 15 lines md5sums Package: chip-seq-dbgsym Source: chip-seq Version: 1.5.5-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 253 Depends: chip-seq (= 1.5.5-3) Section: debug Priority: optional Description: debug symbols for chip-seq Build-Ids: 06029a1bd0add134a080d5cabafb1e2dbc78c83a 2169fcbe12933d6adc9581b372d3748ef0f35754 258e71c16930cf8c3344ce71ae1cffa8f37b3360 28734b46dba4a8138d4aeec7a0e3840517c564ab 299432d01f77bef4336f34ade3bb2255e9339b99 3b4594f96d0cf4948b45943efecf9be277b301b0 4da32cd685b91c6aa8d3c833d2c5ff16b4344595 6d68257f2e5cf764d3a9e11558bc742f4a697a89 706179073cd8936374c222a6244d66f8606aa57e 71a3ad7eb192b516af4ad4aac2a1d2017fdcb88a 74fc1973efb30c2063acf932a907915e5cbe2a77 a65faec25517eae157ffb2ebf1d07e85cb24d81f e60047aa8294eca71bbf25de5c775c2a23e55209 ed8ca874166f6d897cf96afe9e408f8938571e37 drwxr-xr-x root/root 0 2020-03-29 10:44 ./ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/ drwxr-xr-x root/root 0 2020-03-29 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These tools exist as stand-alone C programs and perform the following tasks: . 1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore). . Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format. drwxr-xr-x root/root 0 2020-03-29 10:44 ./ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/ drwxr-xr-x root/root 0 2020-03-29 10:44 ./usr/bin/ -rwxr-xr-x root/root 27616 2020-03-29 10:44 ./usr/bin/bed2bed_display -rwxr-xr-x root/root 31712 2020-03-29 10:44 ./usr/bin/bed2sga -rwxr-xr-x root/root 1721 2020-03-29 10:44 ./usr/bin/check_bed.pl -rwxr-xr-x root/root 31224 2020-03-29 10:44 ./usr/bin/chipcenter -rwxr-xr-x root/root 27176 2020-03-29 10:44 ./usr/bin/chipcor -rwxr-xr-x root/root 55816 2020-03-29 10:44 ./usr/bin/chipextract -rwxr-xr-x root/root 27144 2020-03-29 10:44 ./usr/bin/chippart -rwxr-xr-x root/root 35344 2020-03-29 10:44 ./usr/bin/chippeak -rwxr-xr-x root/root 27136 2020-03-29 10:44 ./usr/bin/chipscore -rwxr-xr-x root/root 920 2020-03-29 10:44 ./usr/bin/chr_replace_sga.pl -rwxr-xr-x root/root 14760 2020-03-29 10:44 ./usr/bin/compactsga -rwxr-xr-x root/root 18904 2020-03-29 10:44 ./usr/bin/countsga -rwxr-xr-x root/root 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root/root 1433 2020-03-29 10:44 ./usr/share/man/man1/sga2wig.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 46716 Build-Time: 22 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/chip-seq_1.5.5-3.dsc Machine Architecture: amd64 Package: chip-seq Package-Time: 31 Source-Version: 1.5.5-3 Space: 46716 Status: successful Version: 1.5.5-3 -------------------------------------------------------------------------------- Finished at 2024-09-14T23:27:02Z Build needed 00:00:31, 46716k disk space