sbuild (Debian sbuild) 0.85.10 (30 May 2024) on carme.larted.org.uk +==============================================================================+ | cd-hit 4.8.1-4 (amd64) Sat, 03 Aug 2024 17:58:58 +0000 | +==============================================================================+ Package: cd-hit Version: 4.8.1-4 Source Version: 4.8.1-4 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.40-amd64-debomatic-189903e3-52db-499f-be8b-64978f501b22' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup cd-hit_4.8.1-4 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup cd-hit_4.8.1-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/cd-hit-p9WpXJ/resolver-LK3JrX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [198 kB] Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-08-03-1406.14-F-2024-08-03-1406.14.pdiff [24.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-08-03-1406.14-F-2024-08-03-1406.14.pdiff [24.1 kB] Hit:5 http://deb.debian.org/debian unstable InRelease Fetched 286 kB in 4s (65.8 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/cd-hit_4.8.1-4.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/cd-hit-p9WpXJ/cd-hit-4.8.1' with '<>' I: NOTICE: Log filtering will replace 'build/cd-hit-p9WpXJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [639 B] Get:5 copy:/<>/apt_archive ./ Packages [671 B] Fetched 1919 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libicu72 liblocale-gettext-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 20.8 MB/20.8 MB of archives. After this operation, 77.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 file:/srv/reprepro perl-5.40/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-1 [96.1 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-2 [1411 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.16 [88.6 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-3+b1 [671 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.16 [891 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libfakeroot amd64 1.35.1-1 [28.6 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 fakeroot amd64 1.35.1-1 [74.5 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.8 MB in 0s (155 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 22966 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... 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Unpacking libicu72:amd64 (72.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.12.7+dfsg-3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg-3+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.16_all.deb ... Unpacking debhelper (13.16) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../30-libfakeroot_1.35.1-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.35.1-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../31-fakeroot_1.35.1-1_amd64.deb ... Unpacking fakeroot (1.35.1-1) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../33-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../34-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-5) ... Setting up bsdextrautils (2.40.2-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.16) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libfakeroot:amd64 (1.35.1-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.35.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libxml2:amd64 (2.12.7+dfsg-3+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.16) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.39-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.9.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1 (2024-06-27) amd64 (x86_64) Toolchain package versions: binutils_2.42.90.20240720-2 dpkg-dev_1.22.11 g++-13_13.3.0-4 g++-14_14.2.0-1 gcc-13_13.3.0-4 gcc-14_14.2.0-1 libc6-dev_2.39-6 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 linux-libc-dev_6.9.12-1 Package versions: adduser_3.137 apt_2.9.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.4 base-passwd_3.6.4 bash_5.2.21-2.1 binutils_2.42.90.20240720-2 binutils-common_2.42.90.20240720-2 binutils-x86-64-linux-gnu_2.42.90.20240720-2 bsdextrautils_2.40.2-1 bsdutils_1:2.40.2-1 build-essential_12.10 bzip2_1.0.8-5.1 coreutils_9.4-3.1 cpp_4:14.1.0-2 cpp-13_13.3.0-4 cpp-13-x86-64-linux-gnu_13.3.0-4 cpp-14_14.2.0-1 cpp-14-x86-64-linux-gnu_14.2.0-1 cpp-x86-64-linux-gnu_4:14.1.0-2 dash_0.5.12-9 debconf_1.5.87 debhelper_13.16 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dirmngr_2.2.43-8 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 eatmydata_131-2 fakeroot_1.35.1-1 file_1:5.45-3 findutils_4.10.0-2 g++_4:14.1.0-2 g++-13_13.3.0-4 g++-13-x86-64-linux-gnu_13.3.0-4 g++-14_14.2.0-1 g++-14-x86-64-linux-gnu_14.2.0-1 g++-x86-64-linux-gnu_4:14.1.0-2 gcc_4:14.1.0-2 gcc-13_13.3.0-4 gcc-13-base_13.3.0-4 gcc-13-x86-64-linux-gnu_13.3.0-4 gcc-14_14.2.0-1 gcc-14-base_14.2.0-1 gcc-14-x86-64-linux-gnu_14.2.0-1 gcc-x86-64-linux-gnu_4:14.1.0-2 gettext_0.22.5-2 gettext-base_0.22.5-2 gnupg_2.2.43-8 gnupg-l10n_2.2.43-8 gnupg-utils_2.2.43-8 gpg_2.2.43-8 gpg-agent_2.2.43-8 gpg-wks-client_2.2.43-8 gpgconf_2.2.43-8 gpgsm_2.2.43-8 gpgv_2.2.43-8 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 help2man_1.49.3 hostname_3.23+nmu2 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.7 libarchive-zip-perl_1.68-1 libasan8_14.2.0-1 libassuan0_2.5.6-1+b1 libatomic1_14.2.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-4 libaudit1_1:3.1.2-4+b1 libbinutils_2.42.90.20240720-2 libblkid1_2.40.2-1 libbsd0_0.12.2-1 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-6 libc-dev-bin_2.39-6 libc-l10n_2.39-6 libc6_2.39-6 libc6-dev_2.39-6 libcap-ng0_0.8.5-1+b1 libcap2_1:2.66-5 libcc1-0_14.2.0-1 libcrypt-dev_1:4.4.36-4 libcrypt1_1:4.4.36-4 libctf-nobfd0_2.42.90.20240720-2 libctf0_2.42.90.20240720-2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.272 libdebhelper-perl_13.16 libdpkg-perl_1.22.11 libeatmydata1_131-2 libelf1t64_0.191-2 libfakeroot_1.35.1-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-13-dev_13.3.0-4 libgcc-14-dev_14.2.0-1 libgcc-s1_14.2.0-1 libgcrypt20_1.11.0-5 libgdbm-compat4t64_1.23-6 libgdbm6t64_1.23-6 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-1 libgpg-error0_1.50-2 libgprofng0_2.42.90.20240720-2 libhogweed6t64_3.10-1 libhwasan0_14.2.0-1 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.26-3+b2 libitm1_14.2.0-1 libjansson4_2.14-2+b2 libksba8_1.6.7-2 libldap-2.5-0_2.5.18+dfsg-2+b1 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-1 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-1 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libncursesw6_6.5-2 libnettle8t64_3.10-1 libnpth0t64_1.6-3.1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.0-1 libpipeline1_1.5.7-2 libquadmath0_14.2.0-1 libreadline8t64_8.2-4 libsasl2-2_2.1.28+dfsg1-6 libsasl2-modules-db_2.1.28+dfsg1-6 libseccomp2_2.5.5-1+b1 libselinux1_3.5-2+b3 libsemanage-common_3.5-1 libsemanage2_3.5-1+b4 libsepol2_3.5-2+b1 libsframe1_2.42.90.20240720-2 libsmartcols1_2.40.2-1 libsqlite3-0_3.46.0-1 libssl3t64_3.2.2-1 libstdc++-13-dev_13.3.0-4 libstdc++-14-dev_14.2.0-1 libstdc++6_14.2.0-1 libsystemd0_256.4-2 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-1 libubsan1_14.2.0-1 libuchardet0_0.0.8-1+b1 libudev1_256.4-2 libunistring5_1.2-1 libuuid1_2.40.2-1 libxml2_2.12.7+dfsg-3+b1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.9.12-1 locales-all_2.39-6 login_1:4.15.3-3 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-2 mawk_1.3.4.20240622-2 ncurses-base_6.5-2 ncurses-bin_6.5-2 passwd_1:4.15.3-3 patch_2.7.6-7 perl_5.40.0-1 perl-base_5.40.0-1 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.0-1 pinentry-curses_1.2.1-3+b2 po-debconf_1.0.21+nmu1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.09-2 tar_1.35+dfsg-3 usr-is-merged_39 util-linux_2.40.2-1 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cd-hit Binary: cd-hit Architecture: any Version: 4.8.1-4 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Étienne Mollier Homepage: http://weizhongli-lab.org/cd-hit/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/cd-hit Vcs-Git: https://salsa.debian.org/med-team/cd-hit.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, zlib1g-dev Package-List: cd-hit deb science optional arch=any Checksums-Sha1: 12c401562cd506296ccafa301e1fd8a29b210470 945639 cd-hit_4.8.1.orig.tar.gz 0c7096447908bdbb0cb5795b02171c585d3618f0 8128 cd-hit_4.8.1-4.debian.tar.xz Checksums-Sha256: f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70 945639 cd-hit_4.8.1.orig.tar.gz 827e471b3724e5680aebf69c155d825aa812be549bf0536defc29668f3abbbe1 8128 cd-hit_4.8.1-4.debian.tar.xz Files: b997bcc5a07703ca9bd3f84818114c37 945639 cd-hit_4.8.1.orig.tar.gz 40beb397b78cc269ea9dc48f9fa22c88 8128 cd-hit_4.8.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfbYsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqkXBAAwMJobCyKBNsZS2dmYUeOST550IJT CeDXSEggmWF9Mw5Rkmazj7TWBRkk0YlhVPhCcJqHiVOnF2ZqP/39oRq7Gr9ZxRvd WkXWxTtJUhJ76sMedjgLxSN+5ymYWc5eTVeTaJnW3rhXRWKp4TSZ137LbRUwSwue SA2acrDl61yZYLP2NunGob882kAdDbWyiYLElvr8dZClEaOfMyCcla3sAwzxVSYW U5xbyTLuOOFI2PZoXcspmJhU/aKo6YtEYEQJKUckD3+RziXLNtbOIe7cvq4STRp7 N03vUNU81KDxjmkoQXMJLHDbyQjh61w6KkdTGCICuWGa9Ihxk3dKLCs4/B4h+yKo 2sSELDU9KDATXVtDS4ZdoFTPxaYgVahmaDQJwSOD958iq2QJoyhWyg+HAz55raPJ hBOu+kAIym6lGbmRsTRVkblFX0KgDZa19jzu+sfR7W3HBFNeWDPZMI65fykUU8HQ Kovkw+grEPeLiZiejk0tsV2x9VyCRsjRiBMwk/19QKvSbf34hgx6unRsiMHwwMSM SXOOqIQAz8PUWAAF2NXe3lSdaX69XFyB6W+unGrKnTAx6Uf8zNqzqGTYn6DG4tls YeGY/8TqU3JMWCUT7zNXAljxfYviGtg0Lme1WH3eFb2T/xKxUOLOGSitBQHD2YER XB4SNWSZft9uOFE= =0WHq -----END PGP SIGNATURE----- gpgv: Signature made Fri Aug 20 08:53:31 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cd-hit_4.8.1-4.dsc: no acceptable signature found dpkg-source: info: extracting cd-hit in /<> dpkg-source: info: unpacking cd-hit_4.8.1.orig.tar.gz dpkg-source: info: unpacking cd-hit_4.8.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_help2man.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network cd-hit_4.8.1-4 perl-5.40-throwaway amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network cd-hit_4.8.1-4 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-189903e3-52db-499f-be8b-64978f501b22 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package cd-hit dpkg-buildpackage: info: source version 4.8.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/<>' rm -f *.o cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454 make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building cd-hit using existing ./cd-hit_4.8.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building cd-hit in cd-hit_4.8.1-4.debian.tar.xz dpkg-source: info: building cd-hit in cd-hit_4.8.1-4.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- openmp=yes CC='$(CXX)' make -j2 "INSTALL=install --strip-program=true" openmp=yes CC=\$\(CXX\) make[2]: Entering directory '/<>' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-common.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-utility.c++ -c cdhit-common.c++:322:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 322 | strcpy( date, __DATE__ ); | ^~~~~~~~ cdhit-common.c++:326:73: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 326 | printf( "Program: CD-HIT, V" CDHIT_VERSION WITH_OPENMP ", %s, " __TIME__ "\n", date ); | ^~~~~~~~ cdhit-utility.c++:9:79: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 9 | char cd_hit_ver[] = "\t\t====== CD-HIT version " CDHIT_VERSION " (built on " __DATE__ ") ======"; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est-2d.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-div.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-454.c++ -c g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-est-2d.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-est-2d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-div.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-div g++ -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DWITH_ZLIB -O2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection cdhit-454.o cdhit-common.o cdhit-utility.o -Wl,-z,relro -Wl,-z,now -lz -o cd-hit-454 make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=debian/cd-hit/usr/lib/cd-hit make -j2 install DESTDIR=/<>/debian/cd-hit AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=debian/cd-hit/usr/lib/cd-hit make[2]: Entering directory '/<>' for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \ install -m 0755 $prog debian/cd-hit/usr/lib/cd-hit; \ done install -m 0755 *.pl debian/cd-hit/usr/lib/cd-hit; make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/<>' mkdir -p /<>/debian/cd-hit/usr/share/man/man1/ help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences' \ /<>/cd-hit > /<>/debian/cd-hit/usr/share/man/man1//cd-hit.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences, optimised for 454 data' \ /<>/cd-hit-454 > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-454.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='quickly group sequences in db1 or db2 format' \ /<>/cd-hit-2d > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences' \ /<>/cd-hit-est > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-est.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='run CD-HIT algorithm on RNA/DNA sequences in db1 or db2 format' \ /<>/cd-hit-est-2d > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-est-2d.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit-2d or cd-hit-est-2d jobs' \ /<>/cd-hit-2d-para.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-2d-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs' \ /<>/cd-hit-para.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-para.1 help2man --no-info --no-discard-stderr --version-string='4.8.1' \ --name='divide a FASTA file into pieces' \ /<>/cd-hit-div.pl > /<>/debian/cd-hit/usr/share/man/man1//cd-hit-div.1 # psi-cd-hit.pl is throwing some errors which are fixed using sed # ... at least in versions <= 4.6.4 - now help2man does not work at all #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities' \ # /<>/psi-cd-hit.pl | \ # sed -e '/^Name "main::.*" used only once:/d' \ # > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit.1 # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /<>/psi-cd-hit-2d.pl > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d.1 # FIXME: what is the difference between psi-cd-hit-2d.pl and psi-cd-hit-2d-g1.pl ? # help2man does not work at all since version 4.6.4 #help2man --no-info --no-discard-stderr --version-string='4.8.1' \ # --name='runs similar algorithm like CD-HIT but using BLAST to calculate similarities in db1 or db2 format' \ # /<>/psi-cd-hit-2d-g1.pl > /<>/debian/cd-hit/usr/share/man/man1//psi-cd-hit-2d-g1.1 # No help output from # clstr2tree.pl # clstr_merge.pl # clstr_merge_noorder.pl # clstr_reduce.pl # clstr_renumber.pl # clstr_rev.pl # clstr_sort_by.pl # clstr_sort_prot_by # make_multi_seq # psi-cd-hit-local.pl -> even throws several "used only once: possible typo" errors make[1]: Leaving directory '/<>' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cd-hit-dbgsym' in '../cd-hit-dbgsym_4.8.1-4_amd64.deb'. dpkg-deb: building package 'cd-hit' in '../cd-hit_4.8.1-4_amd64.deb'. dpkg-genbuildinfo -O../cd-hit_4.8.1-4_amd64.buildinfo dpkg-genchanges -O../cd-hit_4.8.1-4_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2024-08-03T17:59:27Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cd-hit_4.8.1-4_amd64.changes: ----------------------------- Format: 1.8 Date: Fri, 20 Aug 2021 10:39:56 +0200 Source: cd-hit Binary: cd-hit cd-hit-dbgsym Architecture: source amd64 Version: 4.8.1-4 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: cd-hit - suite of programs designed to quickly group sequences Closes: 992052 Changes: cd-hit (4.8.1-4) unstable; urgency=medium . * d/watch: fix broken link to github * d/control: add myself to uploaders * d/t/run-unit-test: disable memory limits in tests (Closes: #992052) * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: 37f6134476f35d6558cf03c25bd9e55dd0294634 1120 cd-hit_4.8.1-4.dsc 0ffd763d625eaac0e51e542aff8c2966873147cb 8136 cd-hit_4.8.1-4.debian.tar.xz 0b911a8add43600f8c287fe442df3ba59a3af90f 2034024 cd-hit-dbgsym_4.8.1-4_amd64.deb 5cf8a2a07f6e462b082507cfe623463a92cdc160 5390 cd-hit_4.8.1-4_amd64.buildinfo 9440705966426957ddec626d6b512712134d7f7f 522332 cd-hit_4.8.1-4_amd64.deb Checksums-Sha256: 2c4d4217becce49493270161f6bc2bd8add41c6d971a52ae202edea05f7f40a4 1120 cd-hit_4.8.1-4.dsc 21db577ee74b36687baaab7997d274f619ab80033aea505fe120d6c61f82e360 8136 cd-hit_4.8.1-4.debian.tar.xz 0335ceec84c64e7214d1fa2202e4c3551423d7e824f36fb94611574ec961e828 2034024 cd-hit-dbgsym_4.8.1-4_amd64.deb 3f028ccc4c3cce406972a95a5608c07b462947b18deffe729b6c194be1523f55 5390 cd-hit_4.8.1-4_amd64.buildinfo 600d8c0b7116f5ac0adf30974ae781f62c0920079da1fc477138335ff29af853 522332 cd-hit_4.8.1-4_amd64.deb Files: 67ed2dc954217b8d14c0f8cc82365e83 1120 science optional cd-hit_4.8.1-4.dsc ca0768fab1b5d4b73c608f949da86119 8136 science optional cd-hit_4.8.1-4.debian.tar.xz 38f4ed9711c4b05e09468d3632e7ef69 2034024 debug optional cd-hit-dbgsym_4.8.1-4_amd64.deb f52f3055689be32f12e0db55b0eae340 5390 science optional cd-hit_4.8.1-4_amd64.buildinfo c40795bd40e84e20a3653cd5624ea36d 522332 science optional cd-hit_4.8.1-4_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: cd-hit Binary: cd-hit cd-hit-dbgsym Architecture: amd64 source Version: 4.8.1-4 Checksums-Md5: 67ed2dc954217b8d14c0f8cc82365e83 1120 cd-hit_4.8.1-4.dsc 38f4ed9711c4b05e09468d3632e7ef69 2034024 cd-hit-dbgsym_4.8.1-4_amd64.deb c40795bd40e84e20a3653cd5624ea36d 522332 cd-hit_4.8.1-4_amd64.deb Checksums-Sha1: 37f6134476f35d6558cf03c25bd9e55dd0294634 1120 cd-hit_4.8.1-4.dsc 0b911a8add43600f8c287fe442df3ba59a3af90f 2034024 cd-hit-dbgsym_4.8.1-4_amd64.deb 9440705966426957ddec626d6b512712134d7f7f 522332 cd-hit_4.8.1-4_amd64.deb Checksums-Sha256: 2c4d4217becce49493270161f6bc2bd8add41c6d971a52ae202edea05f7f40a4 1120 cd-hit_4.8.1-4.dsc 0335ceec84c64e7214d1fa2202e4c3551423d7e824f36fb94611574ec961e828 2034024 cd-hit-dbgsym_4.8.1-4_amd64.deb 600d8c0b7116f5ac0adf30974ae781f62c0920079da1fc477138335ff29af853 522332 cd-hit_4.8.1-4_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 03 Aug 2024 17:59:26 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.4), base-passwd (= 3.6.4), bash (= 5.2.21-2.1), binutils (= 2.42.90.20240720-2), binutils-common (= 2.42.90.20240720-2), binutils-x86-64-linux-gnu (= 2.42.90.20240720-2), bsdextrautils (= 2.40.2-1), bsdutils (= 1:2.40.2-1), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:14.1.0-2), cpp-13 (= 13.3.0-4), cpp-13-x86-64-linux-gnu (= 13.3.0-4), cpp-14 (= 14.2.0-1), cpp-14-x86-64-linux-gnu (= 14.2.0-1), cpp-x86-64-linux-gnu (= 4:14.1.0-2), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.16), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-2), g++ (= 4:14.1.0-2), g++-14 (= 14.2.0-1), g++-14-x86-64-linux-gnu (= 14.2.0-1), g++-x86-64-linux-gnu (= 4:14.1.0-2), gcc (= 4:14.1.0-2), gcc-13 (= 13.3.0-4), gcc-13-base (= 13.3.0-4), gcc-13-x86-64-linux-gnu (= 13.3.0-4), gcc-14 (= 14.2.0-1), gcc-14-base (= 14.2.0-1), gcc-14-x86-64-linux-gnu (= 14.2.0-1), gcc-x86-64-linux-gnu (= 4:14.1.0-2), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), help2man (= 1.49.3), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-1), libatomic1 (= 14.2.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-4), libaudit1 (= 1:3.1.2-4+b1), libbinutils (= 2.42.90.20240720-2), libblkid1 (= 2.40.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-6), libc-dev-bin (= 2.39-6), libc6 (= 2.39-6), libc6-dev (= 2.39-6), libcap-ng0 (= 0.8.5-1+b1), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42.90.20240720-2), libctf0 (= 2.42.90.20240720-2), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.16), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-13-dev (= 13.3.0-4), libgcc-14-dev (= 14.2.0-1), libgcc-s1 (= 14.2.0-1), libgdbm-compat4t64 (= 1.23-6), libgdbm6t64 (= 1.23-6), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-1), libgprofng0 (= 2.42.90.20240720-2), libhwasan0 (= 14.2.0-1), libicu72 (= 72.1-5), libisl23 (= 0.26-3+b2), libitm1 (= 14.2.0-1), libjansson4 (= 2.14-2+b2), liblocale-gettext-perl (= 1.07-7+b1), liblsan0 (= 14.2.0-1), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-1), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-1), libpipeline1 (= 1.5.7-2), libquadmath0 (= 14.2.0-1), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.5-2+b3), libsframe1 (= 2.42.90.20240720-2), libsmartcols1 (= 2.40.2-1), libssl3t64 (= 3.2.2-1), libstdc++-14-dev (= 14.2.0-1), libstdc++6 (= 14.2.0-1), libsystemd0 (= 256.4-2), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-1), libubsan1 (= 14.2.0-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.4-2), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-1), libxml2 (= 2.12.7+dfsg-3+b1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.9.12-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-2), mawk (= 1.3.4.20240622-2), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), patch (= 2.7.6-7), perl (= 5.40.0-1), perl-base (= 5.40.0-1), perl-modules-5.40 (= 5.40.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.09-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-1), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1629448796" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ cd-hit-dbgsym_4.8.1-4_amd64.deb ------------------------------- new Debian package, version 2.0. size 2034024 bytes: control archive=852 bytes. 572 bytes, 12 lines control 719 bytes, 7 lines md5sums Package: cd-hit-dbgsym Source: cd-hit Version: 4.8.1-4 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 2211 Depends: cd-hit (= 4.8.1-4) Section: debug Priority: optional Description: debug symbols for cd-hit Build-Ids: 0bfbcc454a9255a6af0c38219026832c2e5d156f 19f062df936423cbafa77e68cf5db597f0d6f3d6 5d5245bd8c182eafad811e321f4c1f2cc835d89d 71f14d313f7eaee57ad146bf1e0b17d631edf359 752b7433bfac3215b11118a23b199a04aa0d6a5c c14a56a42f19a2c3eb8d729aefd3982a706a9c80 drwxr-xr-x root/root 0 2021-08-20 08:39 ./ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/0b/ -rw-r--r-- root/root 349200 2021-08-20 08:39 ./usr/lib/debug/.build-id/0b/fbcc454a9255a6af0c38219026832c2e5d156f.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/19/ -rw-r--r-- root/root 352600 2021-08-20 08:39 ./usr/lib/debug/.build-id/19/f062df936423cbafa77e68cf5db597f0d6f3d6.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/5d/ -rw-r--r-- root/root 348592 2021-08-20 08:39 ./usr/lib/debug/.build-id/5d/5245bd8c182eafad811e321f4c1f2cc835d89d.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/71/ -rw-r--r-- root/root 348160 2021-08-20 08:39 ./usr/lib/debug/.build-id/71/f14d313f7eaee57ad146bf1e0b17d631edf359.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/75/ -rw-r--r-- root/root 354472 2021-08-20 08:39 ./usr/lib/debug/.build-id/75/2b7433bfac3215b11118a23b199a04aa0d6a5c.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.build-id/c1/ -rw-r--r-- root/root 348488 2021-08-20 08:39 ./usr/lib/debug/.build-id/c1/4a56a42f19a2c3eb8d729aefd3982a706a9c80.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 140512 2021-08-20 08:39 ./usr/lib/debug/.dwz/x86_64-linux-gnu/cd-hit.debug drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit-dbgsym -> cd-hit cd-hit_4.8.1-4_amd64.deb ------------------------ new Debian package, version 2.0. size 522332 bytes: control archive=2152 bytes. 916 bytes, 17 lines control 3461 bytes, 52 lines md5sums Package: cd-hit Version: 4.8.1-4 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1453 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4), perl:any Section: science Priority: optional Homepage: http://weizhongli-lab.org/cd-hit/ Description: suite of programs designed to quickly group sequences cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information. drwxr-xr-x root/root 0 2021-08-20 08:39 ./ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/bin/ lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit -> ../lib/cd-hit/cd-hit lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-2d -> ../lib/cd-hit/cd-hit-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-2d-para -> ../lib/cd-hit/cd-hit-2d-para.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-454 -> ../lib/cd-hit/cd-hit-454 lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-div -> ../lib/cd-hit/cd-hit-div.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-est -> ../lib/cd-hit/cd-hit-est lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-est-2d -> ../lib/cd-hit/cd-hit-est-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cd-hit-para -> ../lib/cd-hit/cd-hit-para.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit -> cd-hit lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-2d -> cd-hit-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-454 -> cd-hit-454 lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-est -> cd-hit-est lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/cdhit-est-2d -> cd-hit-est-2d lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr2tree -> ../lib/cd-hit/clstr2tree.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_merge -> ../lib/cd-hit/clstr_merge.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_merge_noorder -> ../lib/cd-hit/clstr_merge_noorder.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_reduce -> ../lib/cd-hit/clstr_reduce.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_renumber -> ../lib/cd-hit/clstr_renumber.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_rev -> ../lib/cd-hit/clstr_rev.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_sort_by -> ../lib/cd-hit/clstr_sort_by.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/clstr_sort_prot_by -> ../lib/cd-hit/clstr_sort_prot_by.pl lrwxrwxrwx root/root 0 2021-08-20 08:39 ./usr/bin/make_multi_seq -> ../lib/cd-hit/make_multi_seq.pl drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/lib/cd-hit/ -rwxr-xr-x root/root 3152 2021-08-20 08:39 ./usr/lib/cd-hit/FET.pl -rwxr-xr-x root/root 151720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit -rwxr-xr-x root/root 151720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-2d -rwxr-xr-x root/root 12596 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-2d-para.pl -rwxr-xr-x root/root 151816 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-454 -rwxr-xr-x root/root 2126 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-clstr_2_blm8.pl -rwxr-xr-x root/root 147624 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-div -rwxr-xr-x root/root 992 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-div.pl -rwxr-xr-x root/root 151720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-est -rwxr-xr-x root/root 151720 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-est-2d -rwxr-xr-x root/root 11859 2021-08-20 08:39 ./usr/lib/cd-hit/cd-hit-para.pl -rwxr-xr-x root/root 952 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2tree.pl -rwxr-xr-x root/root 1209 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2txt.pl -rwxr-xr-x root/root 4503 2021-08-20 08:39 ./usr/lib/cd-hit/clstr2xml.pl -rwxr-xr-x root/root 464 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_cut.pl -rwxr-xr-x root/root 3258 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_list.pl -rwxr-xr-x root/root 1129 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_list_sort.pl -rwxr-xr-x root/root 3199 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_merge.pl -rwxr-xr-x root/root 2162 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_merge_noorder.pl -rwxr-xr-x root/root 3465 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_quality_eval.pl -rwxr-xr-x root/root 2335 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_quality_eval_by_link.pl -rwxr-xr-x root/root 1000 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_reduce.pl -rwxr-xr-x root/root 196 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_renumber.pl -rwxr-xr-x root/root 554 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_rep.pl -rwxr-xr-x root/root 1160 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_reps_faa_rev.pl -rwxr-xr-x root/root 1620 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_rev.pl -rwxr-xr-x root/root 387 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_select.pl -rwxr-xr-x root/root 555 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_select_rep.pl -rwxr-xr-x root/root 779 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_size_histogram.pl -rwxr-xr-x root/root 725 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_size_stat.pl -rwxr-xr-x root/root 806 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sort_by.pl -rwxr-xr-x root/root 1291 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sort_prot_by.pl -rwxr-xr-x root/root 2928 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sql_tbl.pl -rwxr-xr-x root/root 1103 2021-08-20 08:39 ./usr/lib/cd-hit/clstr_sql_tbl_sort.pl -rwxr-xr-x root/root 1670 2021-08-20 08:39 ./usr/lib/cd-hit/make_multi_seq.pl -rwxr-xr-x root/root 3668 2021-08-20 08:39 ./usr/lib/cd-hit/plot_2d.pl -rwxr-xr-x root/root 2190 2021-08-20 08:39 ./usr/lib/cd-hit/plot_len1.pl drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc-base/ -rw-r--r-- root/root 753 2021-08-10 20:30 ./usr/share/doc-base/cd-hit.cd-hit drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit/ -rw-r--r-- root/root 771 2021-08-10 20:30 ./usr/share/doc/cd-hit/README.Debian -rw-r--r-- root/root 421458 2019-02-28 20:13 ./usr/share/doc/cd-hit/cdhit-user-guide.pdf -rw-r--r-- root/root 807 2021-08-20 08:39 ./usr/share/doc/cd-hit/changelog.Debian.gz -rw-r--r-- root/root 962 2019-02-28 20:13 ./usr/share/doc/cd-hit/changelog.gz -rw-r--r-- root/root 1151 2021-08-20 08:39 ./usr/share/doc/cd-hit/copyright drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/doc/cd-hit/examples/ -rw-r--r-- root/root 2269 2021-08-10 20:30 ./usr/share/doc/cd-hit/examples/example.fa drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-20 08:39 ./usr/share/man/man1/ -rw-r--r-- root/root 1145 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-2d-para.1.gz -rw-r--r-- root/root 1699 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-2d.1.gz -rw-r--r-- root/root 1347 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-454.1.gz -rw-r--r-- root/root 227 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-div.1.gz -rw-r--r-- root/root 2175 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-est-2d.1.gz -rw-r--r-- root/root 2199 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-est.1.gz -rw-r--r-- root/root 1109 2021-08-20 08:39 ./usr/share/man/man1/cd-hit-para.1.gz -rw-r--r-- root/root 1778 2021-08-20 08:39 ./usr/share/man/man1/cd-hit.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 21212 Build-Time: 18 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/cd-hit_4.8.1-4.dsc Machine Architecture: amd64 Package: cd-hit Package-Time: 29 Source-Version: 4.8.1-4 Space: 21212 Status: successful Version: 4.8.1-4 -------------------------------------------------------------------------------- Finished at 2024-08-03T17:59:27Z Build needed 00:00:29, 21212k disk space