sbuild (Debian sbuild) 0.79.1 (22 April 2020) on carme.larted.org.uk +==============================================================================+ | trinityrnaseq 2.11.0+dfsg-3 (amd64) Sat, 24 Oct 2020 21:39:49 +0000 | +==============================================================================+ Package: trinityrnaseq Version: 2.11.0+dfsg-3 Source Version: 2.11.0+dfsg-3 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-632cfd36-36c5-408d-a28b-4ddcf114efa6' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup trinityrnaseq_2.11.0+dfsg-3 sid amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup trinityrnaseq_2.11.0+dfsg-3 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/trinityrnaseq-rRAZPw/resolver-TcKrKH' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [146 kB] Get:2 http://localhost:3142/debian sid InRelease [146 kB] Err:1 http://localhost:3142/debian unstable InRelease Splitting up /var/lib/apt/lists/partial/localhost:3142_debian_dists_unstable_InRelease into data and signature failed Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [27.9 kB] Get:4 http://localhost:3142/debian sid/main Sources 2020-10-24-0801.00.pdiff [9799 B] Get:5 http://localhost:3142/debian sid/main Sources 2020-10-24-1408.51.pdiff [8534 B] Get:6 http://localhost:3142/debian sid/main Sources 2020-10-24-2001.35.pdiff [18.7 kB] Get:6 http://localhost:3142/debian sid/main Sources 2020-10-24-2001.35.pdiff [18.7 kB] Fetched 358 kB in 1s (368 kB/s) Reading package lists... W: An error occurred during the signature verification. The repository is not updated and the previous index files will be used. GPG error: http://localhost:3142/debian unstable InRelease: Splitting up /var/lib/apt/lists/partial/localhost:3142_debian_dists_unstable_InRelease into data and signature failed W: Failed to fetch http://localhost:3142/debian/dists/unstable/InRelease Splitting up /var/lib/apt/lists/partial/localhost:3142_debian_dists_unstable_InRelease into data and signature failed W: Some index files failed to download. They have been ignored, or old ones used instead. Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/trinityrnaseq_2.11.0+dfsg-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/trinityrnaseq-rRAZPw/trinityrnaseq-2.11.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/trinityrnaseq-rRAZPw' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), jellyfish, libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev, cmake, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-fastcluster, liburi-perl, r-cran-ape, r-bioc-ctc, r-cran-gplots, r-cran-readr, r-bioc-biobase, r-bioc-qvalue, r-bioc-goseq, r-bioc-tximport, python3-htseq, rna-star, picard-tools, gmap, hisat2, subread, kallisto, python3-hisat2, r-cran-argparse, r-bioc-dexseq, tabix, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), jellyfish, libjung-free-java, javahelper, libgetopt-java, default-jdk, parafly, libjs-jquery, jaligner, libhts-dev, bowtie2, salmon, zlib1g-dev, cmake, r-bioc-edger, r-bioc-deseq2, r-bioc-rots, r-cran-fastcluster, liburi-perl, r-cran-ape, r-bioc-ctc, r-cran-gplots, r-cran-readr, r-bioc-biobase, r-bioc-qvalue, r-bioc-goseq, r-bioc-tximport, python3-htseq, rna-star, picard-tools, gmap, hisat2, subread, kallisto, python3-hisat2, r-cran-argparse, r-bioc-dexseq, tabix, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [595 B] Get:5 copy:/<>/apt_archive ./ Packages [683 B] Fetched 2241 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ant ant-optional autoconf automake autopoint autotools-dev bowtie2 bsdextrautils build-essential ca-certificates ca-certificates-java cmake cmake-data dctrl-tools debhelper default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dpkg-dev dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato g++ g++-10 gcc gcc-10 gettext gettext-base gmap groff-base hisat2 intltool-debian jaligner java-common javahelper jellyfish kallisto libactivation-java libaopalliance-java libapache-pom-java libarchive-zip-perl libarchive13 libargs4j-java libasan5 libasan6 libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbarclay-java libblas3 libboost-dev libboost-filesystem1.71.0 libboost-iostreams1.71.0 libboost-program-options1.71.0 libboost1.71-dev libbrotli1 libbsd0 libc6-dev libcairo2 libcdi-api-java libclass-method-modifiers-perl libcodemodel-java libcolt-free-java libcommons-cli-java libcommons-codec-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libconcurrent-java libcroco3 libcrypt-dev libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdom4j-java libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfastinfoset-java libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgcc-10-dev libgcc-9-dev libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgetopt-java libgfortran5 libgif7 libgkl-java libgkl-jni libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts-dev libhts3 libhtscodecs2 libhtsjdk-java libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libice6 libicu67 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjellyfish-2.0-2 libjemalloc2 libjoptsimple-java libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp1 libjsoup-java libjsr305-java libjung-free-java liblapack3 liblcms2-2 liblightcouch-java libllvm11 liblog4j2-java liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmodule-runtime-perl libmongodb-java libmoo-perl libncurses6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnsl-dev libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libpciaccess0 libpcsclite1 libperl5.30 libpicard-java libpipeline1 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librhash0 librngom-java librole-tiny-perl librtmp1 libsensors-config libsensors5 libsigsegv2 libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstdc++-9-dev libstreambuffer-java libstrictures-perl libsub-override-perl libsub-quote-perl libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtirpc-dev libtk8.6 libtool libtry-tiny-perl libtxw2-java libubsan1 libuchardet0 liburi-perl libuv1 libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libz3-4 littler m4 man-db mime-support node-html5shiv node-jquery openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless openssl parafly patchutils perl perl-modules-5.30 perl-openssl-defaults picard-tools po-debconf procps python3 python3-hisat2 python3-htseq python3-minimal python3-numpy python3-pkg-resources python3-pysam python3.8 python3.8-minimal python3.9 python3.9-minimal r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-ctc r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger r-bioc-genefilter r-bioc-genelendatabase r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-goseq r-bioc-iranges r-bioc-limma r-bioc-qvalue r-bioc-rhtslib r-bioc-rots r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-amap r-cran-ape r-cran-argparse r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bh r-cran-biasedurn r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-callr r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastcluster r-cran-findpython r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-hwriter r-cran-isoband r-cran-jsonlite r-cran-kernsmooth r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable rna-star salmon sensible-utils sphinx-rtd-theme-common subread tabix ucf unzip wdiff x11-common xdg-utils zip zlib1g-dev Suggested packages: ant-doc antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java autoconf-archive gnu-standards autoconf-doc bowtie2-examples cmake-doc ninja-build debtags dh-make adequate autopkgtest bls-standalone bsd-mailx | mailx check-all-the-things cvs-buildpackage devscripts-el diffoscope disorderfs dose-extra duck faketime gnuplot how-can-i-help libauthen-sasl-perl libdbd-pg-perl libfile-desktopentry-perl libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts mutt piuparts postgresql-client quilt ratt reprotest ssh-client svn-buildpackage w3m debian-keyring g++-multilib g++-10-multilib gcc-10-doc gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-10-multilib gcc-10-locales gettext-doc libasprintf-dev libgettextpo-dev groff libaopalliance-java-doc lrzip libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev glibc-doc libservlet3.1-java libcommons-collections4-java-doc libcommons-io-java-doc libcommons-jexl2-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java git bzr libdtd-parser-java-doc libjdom1-java librhino-java libgetopt-java-doc libgoogle-gson-java-doc libasm-java libcglib-java libdata-dump-perl libxom-java libjoptsimple-java-doc libjsoup-java-doc libjsr305-java-doc liblcms2-utils liblog4j2-java-doc libcrypt-ssleay-perl liblzma-doc libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java libscalar-number-perl pciutils pcscd libplexus-cipher-java-doc libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng libosgi-compendium-java libosgi-core-java libstdc++-10-doc libstdc++-9-doc libbareword-filehandles-perl libindirect-perl libmultidimensional-perl tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl libxml-commons-resolver1.1-java-doc m4-doc apparmor less www-browser nodejs openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python3-setuptools python3.8-venv python3.8-doc binfmt-support python3.9-venv python3.9-doc elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-cran-knitr r-bioc-all r-cran-rmarkdown r-bioc-affy r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-bsgenome r-cran-pheatmap r-cran-pbapply r-bioc-rhdf5 r-bioc-deseq r-bioc-ensembldb r-bioc-gviz r-bioc-annotationhub r-cran-ellipse r-cran-gee r-cran-expm r-cran-igraph clustalw muscle phyml t-coffee r-cran-covr r-cran-roxygen2 r-cran-rpart r-cran-htmlwidgets r-cran-prettycode r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-broom r-cran-rpostgresql r-cran-unitizer r-cran-reticulate r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-sf r-cran-svglite r-cran-r.utils r-cran-forcats r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-magick r-cran-getopt r-cran-interp r-cran-gam r-cran-base64enc r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-inline r-cran-mockr r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-devtools r-cran-usethis r-cran-formattable r-cran-htmltools r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo wdiff-doc Recommended packages: at dput | dupload libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl liblist-compare-perl libstring-shellquote-perl licensecheck lintian pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace wget | curl debian-keyring equivs libsoap-lite-perl libalgorithm-merge-perl curl | wget | lynx bcftools samtools alsa-ucm-conf alsa-topology-conf dbus libfile-fcntllock-perl liblocale-gettext-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libclone-perl javascript-common libjansi-java libclass-xsaccessor-perl libnamespace-clean-perl libsub-name-perl libgpm2 publicsuffix libasm-java libcglib-java libltdl-dev mesa-vulkan-drivers | vulkan-icd libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl psmisc r-recommended r-base-dev r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-class r-cran-knitr r-bioc-shortread r-bioc-org.hs.eg.db r-cran-cliapp r-cran-mockery r-cran-decor r-cran-brio r-cran-httpuv r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-data.table r-cran-testit r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-quantreg r-cran-sodium r-cran-lubridate r-cran-domc r-cran-abind r-cran-rmarkdown r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-xml2 r-cran-mockr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ant ant-optional autoconf automake autopoint autotools-dev bowtie2 bsdextrautils build-essential ca-certificates ca-certificates-java cmake cmake-data dctrl-tools debhelper default-jdk default-jdk-headless default-jre default-jre-headless devscripts dh-autoreconf dh-strip-nondeterminism dpkg-dev dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-lato g++ g++-10 gcc gcc-10 gettext gettext-base gmap groff-base hisat2 intltool-debian jaligner java-common javahelper jellyfish kallisto libactivation-java libaopalliance-java libapache-pom-java libarchive-zip-perl libarchive13 libargs4j-java libasan5 libasan6 libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libb-hooks-op-check-perl libbarclay-java libblas3 libboost-dev libboost-filesystem1.71.0 libboost-iostreams1.71.0 libboost-program-options1.71.0 libboost1.71-dev libbrotli1 libbsd0 libc6-dev libcairo2 libcdi-api-java libclass-method-modifiers-perl libcodemodel-java libcolt-free-java libcommons-cli-java libcommons-codec-java libcommons-collections4-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libconcurrent-java libcroco3 libcrypt-dev libcups2 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdom4j-java libdpkg-perl libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libdynaloader-functions-perl libedit2 libelf1 libencode-locale-perl libexpat1 libfakeroot libfastinfoset-java libfile-homedir-perl libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgcc-10-dev libgcc-9-dev libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgetopt-java libgfortran5 libgif7 libgkl-java libgkl-jni libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgraphite2-3 libguava-java libguice-java libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts-dev libhts3 libhtscodecs2 libhtsjdk-java libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttpclient-java libhttpcore-java libice6 libicu67 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjellyfish-2.0-2 libjemalloc2 libjoptsimple-java libjpeg62-turbo libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp1 libjsoup-java libjsr305-java libjung-free-java liblapack3 liblcms2-2 liblightcouch-java libllvm11 liblog4j2-java liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmodule-runtime-perl libmongodb-java libmoo-perl libncurses6 libnet-http-perl libnet-ssleay-perl libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnsl-dev libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libpciaccess0 libpcsclite1 libperl5.30 libpicard-java libpipeline1 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpng16-16 libprocps8 libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librhash0 librngom-java librole-tiny-perl librtmp1 libsensors-config libsensors5 libsigsegv2 libsisu-guice-java libsisu-inject-java libsisu-ioc-java libsisu-plexus-java libslf4j-java libsm6 libsnappy-java libsnappy-jni libsnappy1v5 libssh2-1 libstaden-read14 libstax-ex-java libstdc++-10-dev libstdc++-9-dev libstreambuffer-java libstrictures-perl libsub-override-perl libsub-quote-perl libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtirpc-dev libtk8.6 libtool libtry-tiny-perl libtxw2-java libubsan1 libuchardet0 liburi-perl libuv1 libvecmath-java libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libz3-4 littler m4 man-db mime-support node-html5shiv node-jquery openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless openssl parafly patchutils perl perl-modules-5.30 perl-openssl-defaults picard-tools po-debconf procps python3 python3-hisat2 python3-htseq python3-minimal python3-numpy python3-pkg-resources python3-pysam python3.8 python3.8-minimal python3.9 python3.9-minimal r-base-core r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-ctc r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger r-bioc-genefilter r-bioc-genelendatabase r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-goseq r-bioc-iranges r-bioc-limma r-bioc-qvalue r-bioc-rhtslib r-bioc-rots r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-amap r-cran-ape r-cran-argparse r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bh r-cran-biasedurn r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-callr r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastcluster r-cran-findpython r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-hwriter r-cran-isoband r-cran-jsonlite r-cran-kernsmooth r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable rna-star salmon sbuild-build-depends-main-dummy sensible-utils sphinx-rtd-theme-common subread tabix ucf unzip wdiff x11-common xdg-utils zip zlib1g-dev 0 upgraded, 500 newly installed, 0 to remove and 0 not upgraded. Need to get 754 MB of archives. After this operation, 1813 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1116 B] Get:2 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://localhost:3142/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://localhost:3142/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://localhost:3142/debian unstable/main amd64 fonts-lato all 2.0-2 [2698 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:13 http://localhost:3142/debian unstable/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:14 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.8.6-1 [37.7 kB] Get:15 http://localhost:3142/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:17 http://localhost:3142/debian unstable/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.8.6-1 [20.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.8.6-1 [64.0 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libpython3.9-minimal amd64 3.9.0-5 [797 kB] Get:21 http://localhost:3142/debian unstable/main amd64 python3.9-minimal amd64 3.9.0-5 [1957 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libncurses6 amd64 6.2+20200918-1 [102 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-5 [62.7 kB] Get:24 http://localhost:3142/debian unstable/main amd64 procps amd64 2:3.3.16-5 [262 kB] Get:25 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:28 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:29 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:30 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:31 http://localhost:3142/debian unstable/main amd64 openssl amd64 1.1.1h-1 [848 kB] Get:32 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20200601 [158 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libnspr4 amd64 2:4.29-1 [112 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libnss3 amd64 2:3.58-1 [1303 kB] Get:35 http://localhost:3142/debian unstable/main amd64 ca-certificates-java all 20190909 [15.7 kB] Get:36 http://localhost:3142/debian unstable/main amd64 java-common all 0.72 [14.5 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libavahi-common-data amd64 0.8-3 [126 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libavahi-common3 amd64 0.8-3 [58.3 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libdbus-1-3 amd64 1.12.20-1 [217 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libavahi-client3 amd64 0.8-3 [61.7 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libcups2 amd64 2.3.3-3 [348 kB] Get:42 http://localhost:3142/debian unstable/main amd64 liblcms2-2 amd64 2.9-4+b1 [146 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b1 [282 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.10.2+dfsg-4 [410 kB] Get:47 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:48 http://localhost:3142/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libasound2-data all 1.2.3.2-1 [38.1 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libasound2 amd64 1.2.3.2-1 [355 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libpcsclite1 amd64 1.9.0-1 [59.3 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libxi6 amd64 2:1.7.10-1 [83.4 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:62 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+21 [252 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get:64 http://localhost:3142/debian unstable/main amd64 openjdk-11-jre-headless amd64 11.0.9+11-1 [37.6 MB] Get:65 http://localhost:3142/debian unstable/main amd64 default-jre-headless amd64 2:1.11-72 [10.9 kB] Get:66 http://localhost:3142/debian unstable/main amd64 ant all 1.10.9-1 [2118 kB] Get:67 http://localhost:3142/debian unstable/main amd64 ant-optional all 1.10.9-1 [381 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:69 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:70 http://localhost:3142/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:71 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:72 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:73 http://localhost:3142/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libtbb2 amd64 2020.3-1 [161 kB] Get:75 http://localhost:3142/debian unstable/main amd64 bowtie2 amd64 2.4.2-1 [1342 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.31-4 [2344 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libasan6 amd64 10.2.0-15 [340 kB] Get:81 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 10.2.0-15 [134 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libgcc-10-dev amd64 10.2.0-15 [2328 kB] Get:83 http://localhost:3142/debian unstable/main amd64 gcc-10 amd64 10.2.0-15 [15.9 MB] Get:84 http://localhost:3142/debian unstable/main amd64 gcc amd64 4:10.2.0-1 [5196 B] Get:85 http://localhost:3142/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-15 [1738 kB] Get:86 http://localhost:3142/debian unstable/main amd64 g++-10 amd64 10.2.0-15 [8669 kB] Get:87 http://localhost:3142/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:88 http://localhost:3142/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:89 http://localhost:3142/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:90 http://localhost:3142/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:91 http://localhost:3142/debian unstable/main amd64 cmake-data all 3.18.4-1 [1725 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.1 [692 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libarchive13 amd64 3.4.3-2 [342 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.41.0-3 [74.0 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB] Get:97 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libcurl4 amd64 7.72.0-1 [336 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libjsoncpp1 amd64 1.7.4-3.1 [77.6 kB] Get:101 http://localhost:3142/debian unstable/main amd64 librhash0 amd64 1.4.0-1 [124 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libuv1 amd64 1.39.0-1 [131 kB] Get:103 http://localhost:3142/debian unstable/main amd64 cmake amd64 3.18.4-1 [5599 kB] Get:104 http://localhost:3142/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:106 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:111 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:113 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libglib2.0-0 amd64 2.66.1-2 [1362 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:116 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:117 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:118 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:119 http://localhost:3142/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libglvnd0 amd64 1.3.2-1 [53.6 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.102-1 [14.5 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libdrm2 amd64 2.4.102-1 [41.5 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libglapi-mesa amd64 20.2.1-1 [71.0 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libx11-xcb1 amd64 2:1.6.12-1 [203 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libxcb-dri2-0 amd64 1.14-2 [103 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libxcb-dri3-0 amd64 1.14-2 [102 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libxcb-glx0 amd64 1.14-2 [118 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libxcb-present0 amd64 1.14-2 [101 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libxcb-sync1 amd64 1.14-2 [105 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libxcb-xfixes0 amd64 1.14-2 [105 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libxdamage1 amd64 1:1.1.5-2 [15.7 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libxfixes3 amd64 1:5.0.3-2 [22.1 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:134 http://localhost:3142/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.102-1 [28.2 kB] Get:136 http://localhost:3142/debian unstable/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get:137 http://localhost:3142/debian unstable/main amd64 libdrm-intel1 amd64 2.4.102-1 [70.4 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.102-1 [26.5 kB] Get:139 http://localhost:3142/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.102-1 [29.7 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:141 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libllvm11 amd64 1:11.0.0-3 [17.9 MB] Get:143 http://localhost:3142/debian unstable/main amd64 libsensors-config all 1:3.6.0-2 [32.0 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-2 [53.1 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libvulkan1 amd64 1.2.154.1-1 [102 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libgl1-mesa-dri amd64 20.2.1-1 [9609 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libglx-mesa0 amd64 20.2.1-1 [186 kB] Get:148 http://localhost:3142/debian unstable/main amd64 libglx0 amd64 1.3.2-1 [35.7 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libgl1 amd64 1.3.2-1 [89.5 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libgif7 amd64 5.1.9-1 [44.7 kB] Get:151 http://localhost:3142/debian unstable/main amd64 openjdk-11-jre amd64 11.0.9+11-1 [34.1 kB] Get:152 http://localhost:3142/debian unstable/main amd64 default-jre amd64 2:1.11-72 [1044 B] Get:153 http://localhost:3142/debian unstable/main amd64 openjdk-11-jdk-headless amd64 11.0.9+11-1 [213 MB] Get:154 http://localhost:3142/debian unstable/main amd64 default-jdk-headless amd64 2:1.11-72 [1100 B] Get:155 http://localhost:3142/debian unstable/main amd64 openjdk-11-jdk amd64 11.0.9+11-1 [13.4 kB] Get:156 http://localhost:3142/debian unstable/main amd64 default-jdk amd64 2:1.11-72 [1056 B] Get:157 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.25.3-1 [47.0 kB] Get:158 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.25.3-1 [87.0 kB] Get:159 http://localhost:3142/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:160 http://localhost:3142/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:161 http://localhost:3142/debian unstable/main amd64 libio-pty-perl amd64 1:1.12-1 [36.3 kB] Get:162 http://localhost:3142/debian unstable/main amd64 libipc-run-perl all 20200505.0-1 [102 kB] Get:163 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:164 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b2 [11.3 kB] Get:165 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:166 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b1 [15.9 kB] Get:167 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b2 [25.6 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:170 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:171 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:172 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:173 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:174 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:175 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:176 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:177 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.11-1 [11.2 kB] Get:178 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:179 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:180 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.75-1 [105 kB] Get:181 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:182 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:183 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:184 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.26-1 [79.4 kB] Get:185 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.08-1 [19.3 kB] Get:186 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:187 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 5 [7360 B] Get:188 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-3 [320 kB] Get:189 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.068-1 [215 kB] Get:190 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.19-1 [24.8 kB] Get:191 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.09-1 [12.0 kB] Get:192 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:193 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:194 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.49-1 [192 kB] Get:195 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:196 http://localhost:3142/debian unstable/main amd64 wdiff amd64 1.2.2-2+b1 [122 kB] Get:197 http://localhost:3142/debian unstable/main amd64 devscripts amd64 2.20.4 [1061 kB] Get:198 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:199 http://localhost:3142/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-2 [516 kB] Get:200 http://localhost:3142/debian unstable/main amd64 gmap amd64 2020-10-14+ds-1 [11.6 MB] Get:201 http://localhost:3142/debian unstable/main amd64 hisat2 amd64 2.2.1-1+b1 [3656 kB] Get:202 http://localhost:3142/debian unstable/main amd64 jaligner all 1.0+dfsg-7 [136 kB] Get:203 http://localhost:3142/debian unstable/main amd64 javahelper all 0.77 [97.0 kB] Get:204 http://localhost:3142/debian unstable/main amd64 libcurl3-gnutls amd64 7.72.0-1 [333 kB] Get:205 http://localhost:3142/debian unstable/main amd64 libdeflate0 amd64 1.6-1 [55.1 kB] Get:206 http://localhost:3142/debian unstable/main amd64 libhts3 amd64 1.11-2 [373 kB] Get:207 http://localhost:3142/debian unstable/main amd64 libjellyfish-2.0-2 amd64 2.3.0-6+b1 [65.8 kB] Get:208 http://localhost:3142/debian unstable/main amd64 jellyfish amd64 2.3.0-6+b1 [347 kB] Get:209 http://localhost:3142/debian unstable/main amd64 kallisto amd64 0.46.2+dfsg-2 [242 kB] Get:210 http://localhost:3142/debian unstable/main amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:211 http://localhost:3142/debian unstable/main amd64 libaopalliance-java all 20070526-6 [9048 B] Get:212 http://localhost:3142/debian unstable/main amd64 libapache-pom-java all 18-1 [4676 B] Get:213 http://localhost:3142/debian unstable/main amd64 libargs4j-java all 2.33-1 [139 kB] Get:214 http://localhost:3142/debian unstable/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:215 http://localhost:3142/debian unstable/main amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get:216 http://localhost:3142/debian unstable/main amd64 libfreemarker-java all 2.3.23-9 [1228 kB] Get:217 http://localhost:3142/debian unstable/main amd64 libjoptsimple-java all 5.0.4-4 [73.1 kB] Get:218 http://localhost:3142/debian unstable/main amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:219 http://localhost:3142/debian unstable/main amd64 libcommons-logging-java all 1.2-2 [62.2 kB] Get:220 http://localhost:3142/debian unstable/main amd64 libgoogle-gson-java all 2.8.6-1 [225 kB] Get:221 http://localhost:3142/debian unstable/main amd64 libcommons-codec-java all 1.14-1 [286 kB] Get:222 http://localhost:3142/debian unstable/main amd64 libhttpcore-java all 4.4.13-1 [631 kB] Get:223 http://localhost:3142/debian unstable/main amd64 libhttpclient-java all 4.5.13-1 [1226 kB] Get:224 http://localhost:3142/debian unstable/main amd64 liblightcouch-java all 0.0.6-1 [63.7 kB] Get:225 http://localhost:3142/debian unstable/main amd64 libmongodb-java all 3.6.3-2 [1901 kB] Get:226 http://localhost:3142/debian unstable/main amd64 libslf4j-java all 1.7.25-3 [143 kB] Get:227 http://localhost:3142/debian unstable/main amd64 liblog4j2-java all 2.11.2-1 [1757 kB] Get:228 http://localhost:3142/debian unstable/main amd64 libbarclay-java all 2.1.0-3 [116 kB] Get:229 http://localhost:3142/debian unstable/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get:230 http://localhost:3142/debian unstable/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:231 http://localhost:3142/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-18 [1702 kB] Get:232 http://localhost:3142/debian unstable/main amd64 libboost1.71-dev amd64 1.71.0-7+b1 [9100 kB] Get:233 http://localhost:3142/debian unstable/main amd64 libboost-dev amd64 1.71.0.3 [4340 B] Get:234 http://localhost:3142/debian unstable/main amd64 libboost-filesystem1.71.0 amd64 1.71.0-7+b1 [270 kB] Get:235 http://localhost:3142/debian unstable/main amd64 libboost-iostreams1.71.0 amd64 1.71.0-7+b1 [263 kB] Get:236 http://localhost:3142/debian unstable/main amd64 libboost-program-options1.71.0 amd64 1.71.0-7+b1 [364 kB] Get:237 http://localhost:3142/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:238 http://localhost:3142/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:239 http://localhost:3142/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:240 http://localhost:3142/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:241 http://localhost:3142/debian unstable/main amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get:242 http://localhost:3142/debian unstable/main amd64 libcdi-api-java all 1.2-2 [54.5 kB] Get:243 http://localhost:3142/debian unstable/main amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:244 http://localhost:3142/debian unstable/main amd64 libdom4j-java all 2.1.3-1 [310 kB] Get:245 http://localhost:3142/debian unstable/main amd64 libcommons-io-java all 2.8.0-1 [279 kB] Get:246 http://localhost:3142/debian unstable/main amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get:247 http://localhost:3142/debian unstable/main amd64 libcommons-cli-java all 1.4-2 [57.3 kB] Get:248 http://localhost:3142/debian unstable/main amd64 libcommons-lang3-java all 3.11-1 [550 kB] Get:249 http://localhost:3142/debian unstable/main amd64 libgeronimo-annotation-1.3-spec-java all 1.0-1 [10.6 kB] Get:250 http://localhost:3142/debian unstable/main amd64 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get:251 http://localhost:3142/debian unstable/main amd64 libguava-java all 29.0-6 [2419 kB] Get:252 http://localhost:3142/debian unstable/main amd64 libguice-java all 4.2.3-1 [979 kB] Get:253 http://localhost:3142/debian unstable/main amd64 libmaven-parent-java all 31-2 [5100 B] Get:254 http://localhost:3142/debian unstable/main amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:255 http://localhost:3142/debian unstable/main amd64 libwagon-provider-api-java all 3.3.4-1 [50.2 kB] Get:256 http://localhost:3142/debian unstable/main amd64 libmaven-resolver-java all 1.4.2-1 [556 kB] Get:257 http://localhost:3142/debian unstable/main amd64 libplexus-cipher-java all 1.7-3 [15.0 kB] Get:258 http://localhost:3142/debian unstable/main amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:259 http://localhost:3142/debian unstable/main amd64 libplexus-component-annotations-java all 2.1.0-1 [7620 B] Get:260 http://localhost:3142/debian unstable/main amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:261 http://localhost:3142/debian unstable/main amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:262 http://localhost:3142/debian unstable/main amd64 libsisu-inject-java all 0.3.3-1 [347 kB] Get:263 http://localhost:3142/debian unstable/main amd64 libsisu-plexus-java all 0.3.3-3 [182 kB] Get:264 http://localhost:3142/debian unstable/main amd64 libmaven3-core-java all 3.6.3-1 [1538 kB] Get:265 http://localhost:3142/debian unstable/main amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:266 http://localhost:3142/debian unstable/main amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:267 http://localhost:3142/debian unstable/main amd64 libcommons-compress-java all 1.20-1 [574 kB] Get:268 http://localhost:3142/debian unstable/main amd64 libplexus-io-java all 3.2.0-1 [65.0 kB] Get:269 http://localhost:3142/debian unstable/main amd64 libsnappy1v5 amd64 1.1.8-1 [17.9 kB] Get:270 http://localhost:3142/debian unstable/main amd64 libsnappy-jni amd64 1.1.7.7-1 [7068 B] Get:271 http://localhost:3142/debian unstable/main amd64 libsnappy-java all 1.1.7.7-1 [96.3 kB] Get:272 http://localhost:3142/debian unstable/main amd64 libxz-java all 1.8-2 [141 kB] Get:273 http://localhost:3142/debian unstable/main amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:274 http://localhost:3142/debian unstable/main amd64 libsisu-guice-java all 4.2.0-1 [785 kB] Get:275 http://localhost:3142/debian unstable/main amd64 libsisu-ioc-java all 2.3.0-11 [492 kB] Get:276 http://localhost:3142/debian unstable/main amd64 libjsoup-java all 1.10.2-2 [350 kB] Get:277 http://localhost:3142/debian unstable/main amd64 libwagon-http-java all 3.3.4-1 [53.9 kB] Get:278 http://localhost:3142/debian unstable/main amd64 libistack-commons-java all 3.0.6-4 [145 kB] Get:279 http://localhost:3142/debian unstable/main amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-9 [163 kB] Get:280 http://localhost:3142/debian unstable/main amd64 libconcurrent-java all 1.3.4-4 [133 kB] Get:281 http://localhost:3142/debian unstable/main amd64 libcolt-free-java all 1.2.0+dfsg-7 [434 kB] Get:282 http://localhost:3142/debian unstable/main amd64 libcommons-collections4-java all 4.2-1 [662 kB] Get:283 http://localhost:3142/debian unstable/main amd64 libcommons-jexl2-java all 2.1.1-4 [257 kB] Get:284 http://localhost:3142/debian unstable/main amd64 libcommons-math3-java all 3.6.1-3 [2018 kB] Get:285 http://localhost:3142/debian unstable/main amd64 libcurl4-gnutls-dev amd64 7.72.0-1 [422 kB] Get:286 http://localhost:3142/debian unstable/main amd64 libdatrie1 amd64 0.2.12-3 [39.5 kB] Get:287 http://localhost:3142/debian unstable/main amd64 libdeflate-dev amd64 1.6-1 [46.5 kB] Get:288 http://localhost:3142/debian unstable/main amd64 libdtd-parser-java all 1.2~svn20110404-1 [62.5 kB] Get:289 http://localhost:3142/debian unstable/main amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:290 http://localhost:3142/debian unstable/main amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:291 http://localhost:3142/debian unstable/main amd64 libstreambuffer-java all 1.5.4-1 [71.8 kB] Get:292 http://localhost:3142/debian unstable/main amd64 librelaxng-datatype-java all 1.0+ds1-3 [11.7 kB] Get:293 http://localhost:3142/debian unstable/main amd64 libxsom-java all 2.3.0.1-9 [396 kB] Get:294 http://localhost:3142/debian unstable/main amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:295 http://localhost:3142/debian unstable/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:296 http://localhost:3142/debian unstable/main amd64 libgatk-native-bindings-java all 1.0.0-2 [7140 B] Get:297 http://localhost:3142/debian unstable/main amd64 libgetopt-java all 1.0.14+dfsg-4 [25.5 kB] Get:298 http://localhost:3142/debian unstable/main amd64 libgfortran5 amd64 10.2.0-15 [728 kB] Get:299 http://localhost:3142/debian unstable/main amd64 libgkl-jni amd64 0.8.6+dfsg-1+b1 [188 kB] Get:300 http://localhost:3142/debian unstable/main amd64 libgkl-java amd64 0.8.6+dfsg-1+b1 [18.5 kB] Get:301 http://localhost:3142/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:302 http://localhost:3142/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:303 http://localhost:3142/debian unstable/main amd64 liblzma-dev amd64 5.2.4-1+b1 [211 kB] Get:304 http://localhost:3142/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:305 http://localhost:3142/debian unstable/main amd64 libhts-dev amd64 1.11-2 [3859 kB] Get:306 http://localhost:3142/debian unstable/main amd64 libhtscodecs2 amd64 0.5-3 [50.6 kB] Get:307 http://localhost:3142/debian unstable/main amd64 librngom-java all 2.3.0.1-9 [288 kB] Get:308 http://localhost:3142/debian unstable/main amd64 libtxw2-java all 2.3.0.1-9 [134 kB] Get:309 http://localhost:3142/debian unstable/main amd64 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get:310 http://localhost:3142/debian unstable/main amd64 libjaxb-java all 2.3.0.1-9 [1966 kB] Get:311 http://localhost:3142/debian unstable/main amd64 libngs-sdk2 amd64 2.10.5-1 [59.7 kB] Get:312 http://localhost:3142/debian unstable/main amd64 libngs-sdk-dev amd64 2.10.5-1 [105 kB] Get:313 http://localhost:3142/debian unstable/main amd64 libngs-java amd64 2.10.5-1 [80.2 kB] Get:314 http://localhost:3142/debian unstable/main amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1607 kB] Get:315 http://localhost:3142/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:316 http://localhost:3142/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:317 http://localhost:3142/debian unstable/main amd64 libjemalloc2 amd64 5.2.1-1 [259 kB] Get:318 http://localhost:3142/debian unstable/main amd64 node-jquery all 3.5.1+dfsg-4 [309 kB] Get:319 http://localhost:3142/debian unstable/main amd64 libjs-jquery all 3.5.1+dfsg-4 [3612 B] Get:320 http://localhost:3142/debian unstable/main amd64 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get:321 http://localhost:3142/debian unstable/main amd64 libjs-sphinxdoc all 3.2.1-2 [122 kB] Get:322 http://localhost:3142/debian unstable/main amd64 libvecmath-java all 1.5.2-7 [97.0 kB] Get:323 http://localhost:3142/debian unstable/main amd64 libjung-free-java all 2.0.1+dfsg-1 [976 kB] Get:324 http://localhost:3142/debian unstable/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get:325 http://localhost:3142/debian unstable/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:326 http://localhost:3142/debian unstable/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:327 http://localhost:3142/debian unstable/main amd64 libpango-1.0-0 amd64 1.46.2-1 [191 kB] Get:328 http://localhost:3142/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.46.2-1 [61.2 kB] Get:329 http://localhost:3142/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.46.2-1 [50.0 kB] Get:330 http://localhost:3142/debian unstable/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:331 http://localhost:3142/debian unstable/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:332 http://localhost:3142/debian unstable/main amd64 libpicard-java amd64 2.23.7+dfsg-1 [1616 kB] Get:333 http://localhost:3142/debian unstable/main amd64 libpython3.9-stdlib amd64 3.9.0-5 [1750 kB] Get:334 http://localhost:3142/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:335 http://localhost:3142/debian unstable/main amd64 libstaden-read14 amd64 1.14.13-4 [265 kB] Get:336 http://localhost:3142/debian unstable/main amd64 libtcl8.6 amd64 8.6.10+dfsg-1 [1007 kB] Get:337 http://localhost:3142/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:338 http://localhost:3142/debian unstable/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:339 http://localhost:3142/debian unstable/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get:340 http://localhost:3142/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get:341 http://localhost:3142/debian unstable/main amd64 libtk8.6 amd64 8.6.10-1 [773 kB] Get:342 http://localhost:3142/debian unstable/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:343 http://localhost:3142/debian unstable/main amd64 zip amd64 3.0-11+b1 [234 kB] Get:344 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:345 http://localhost:3142/debian unstable/main amd64 xdg-utils all 1.1.3-2 [74.6 kB] Get:346 http://localhost:3142/debian unstable/main amd64 r-base-core amd64 4.0.3-1 [25.1 MB] Get:347 http://localhost:3142/debian unstable/main amd64 r-cran-littler amd64 0.3.12-1 [95.9 kB] Get:348 http://localhost:3142/debian unstable/main amd64 littler all 0.3.12-1 [15.6 kB] Get:349 http://localhost:3142/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:350 http://localhost:3142/debian unstable/main amd64 parafly amd64 0.1.0-1 [16.4 kB] Get:351 http://localhost:3142/debian unstable/main amd64 picard-tools amd64 2.23.7+dfsg-1 [312 kB] Get:352 http://localhost:3142/debian unstable/main amd64 python3-hisat2 all 2.2.1-1 [14.2 kB] Get:353 http://localhost:3142/debian unstable/main amd64 python3.9 amd64 3.9.0-5 [455 kB] Get:354 http://localhost:3142/debian unstable/main amd64 python3-pkg-resources all 50.3.0-1 [187 kB] Get:355 http://localhost:3142/debian unstable/main amd64 python3-numpy amd64 1:1.19.2-2+b1 [3350 kB] Get:356 http://localhost:3142/debian unstable/main amd64 python3-pysam amd64 0.15.4+ds-3+b1 [2335 kB] Get:357 http://localhost:3142/debian unstable/main amd64 python3-htseq amd64 0.12.4-1 [398 kB] Get:358 http://localhost:3142/debian unstable/main amd64 r-bioc-biocgenerics all 0.34.0-1 [639 kB] Get:359 http://localhost:3142/debian unstable/main amd64 r-bioc-biobase amd64 2.48.0-1 [2221 kB] Get:360 http://localhost:3142/debian unstable/main amd64 r-bioc-s4vectors amd64 0.26.1-1 [2005 kB] Get:361 http://localhost:3142/debian unstable/main amd64 r-bioc-iranges amd64 2.22.2-1 [2272 kB] Get:362 http://localhost:3142/debian unstable/main amd64 r-cran-dbi all 1.1.0-3 [599 kB] Get:363 http://localhost:3142/debian unstable/main amd64 r-cran-bit amd64 4.0.4+dfsg-1 [422 kB] Get:364 http://localhost:3142/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB] Get:365 http://localhost:3142/debian unstable/main amd64 r-cran-rlang amd64 0.4.8-1 [1141 kB] Get:366 http://localhost:3142/debian unstable/main amd64 r-cran-ellipsis amd64 0.3.1-1 [31.7 kB] Get:367 http://localhost:3142/debian unstable/main amd64 r-cran-digest amd64 0.6.26-1 [192 kB] Get:368 http://localhost:3142/debian unstable/main amd64 r-cran-glue amd64 1.4.2-1 [138 kB] Get:369 http://localhost:3142/debian unstable/main amd64 r-cran-vctrs amd64 0.3.4-1 [1076 kB] Get:370 http://localhost:3142/debian unstable/main amd64 r-cran-blob all 1.2.1-2 [49.1 kB] Get:371 http://localhost:3142/debian unstable/main amd64 r-cran-memoise all 1.1.0-3 [39.2 kB] Get:372 http://localhost:3142/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get:373 http://localhost:3142/debian unstable/main amd64 r-cran-pkgkitten all 0.2.0-1 [25.3 kB] Get:374 http://localhost:3142/debian unstable/main amd64 r-cran-rcpp amd64 1.0.5-1 [2051 kB] Get:375 http://localhost:3142/debian unstable/main amd64 r-cran-bh all 1.66.0-1 [5072 B] Get:376 http://localhost:3142/debian unstable/main amd64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get:377 http://localhost:3142/debian unstable/main amd64 r-cran-rsqlite amd64 2.2.1-1 [1011 kB] Get:378 http://localhost:3142/debian unstable/main amd64 r-bioc-annotationdbi all 1.50.3-1 [4721 kB] Get:379 http://localhost:3142/debian unstable/main amd64 r-cran-xml amd64 3.99-0.5-1 [1722 kB] Get:380 http://localhost:3142/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:381 http://localhost:3142/debian unstable/main amd64 r-cran-bitops amd64 1.0-6-5 [23.6 kB] Get:382 http://localhost:3142/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.2-1+b1 [787 kB] Get:383 http://localhost:3142/debian unstable/main amd64 r-bioc-annotate all 1.66.0+dfsg-1 [2104 kB] Get:384 http://localhost:3142/debian unstable/main amd64 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get:385 http://localhost:3142/debian unstable/main amd64 r-cran-generics all 0.0.2-3 [66.2 kB] Get:386 http://localhost:3142/debian unstable/main amd64 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get:387 http://localhost:3142/debian unstable/main amd64 r-cran-magrittr all 1.5-6 [154 kB] Get:388 http://localhost:3142/debian unstable/main amd64 r-cran-r6 all 2.4.1-2 [79.2 kB] Get:389 http://localhost:3142/debian unstable/main amd64 r-cran-crayon all 1.3.4-5 [750 kB] Get:390 http://localhost:3142/debian unstable/main amd64 r-cran-fansi amd64 0.4.1-1+b1 [345 kB] Get:391 http://localhost:3142/debian unstable/main amd64 r-cran-cli all 2.1.0-1 [410 kB] Get:392 http://localhost:3142/debian unstable/main amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:393 http://localhost:3142/debian unstable/main amd64 r-cran-pillar all 1.4.6-1 [227 kB] Get:394 http://localhost:3142/debian unstable/main amd64 r-cran-tibble amd64 3.0.4-1 [427 kB] Get:395 http://localhost:3142/debian unstable/main amd64 r-cran-purrr amd64 0.3.4-1+b1 [398 kB] Get:396 http://localhost:3142/debian unstable/main amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1 [192 kB] Get:397 http://localhost:3142/debian unstable/main amd64 r-cran-dplyr amd64 1.0.2-1 [1135 kB] Get:398 http://localhost:3142/debian unstable/main amd64 r-cran-dbplyr all 1.4.4-1 [619 kB] Get:399 http://localhost:3142/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.1-2 [145 kB] Get:400 http://localhost:3142/debian unstable/main amd64 r-cran-curl amd64 4.3+dfsg-1+b1 [151 kB] Get:401 http://localhost:3142/debian unstable/main amd64 r-cran-jsonlite amd64 1.7.1+dfsg-1 [447 kB] Get:402 http://localhost:3142/debian unstable/main amd64 r-cran-mime amd64 0.9-1+b1 [35.5 kB] Get:403 http://localhost:3142/debian unstable/main amd64 r-cran-sys amd64 3.4-1 [42.9 kB] Get:404 http://localhost:3142/debian unstable/main amd64 r-cran-askpass amd64 1.1-2 [22.2 kB] Get:405 http://localhost:3142/debian unstable/main amd64 r-cran-openssl amd64 1.4.3+dfsg-1 [376 kB] Get:406 http://localhost:3142/debian unstable/main amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:407 http://localhost:3142/debian unstable/main amd64 r-bioc-biocfilecache all 1.12.1+dfsg-1 [289 kB] Get:408 http://localhost:3142/debian unstable/main amd64 r-cran-formatr all 1.7-2 [151 kB] Get:409 http://localhost:3142/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get:410 http://localhost:3142/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get:411 http://localhost:3142/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get:412 http://localhost:3142/debian unstable/main amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:413 http://localhost:3142/debian unstable/main amd64 r-bioc-biocparallel amd64 1.22.0-2 [1144 kB] Get:414 http://localhost:3142/debian unstable/main amd64 r-cran-hms all 0.5.3-2 [108 kB] Get:415 http://localhost:3142/debian unstable/main amd64 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get:416 http://localhost:3142/debian unstable/main amd64 r-cran-progress all 1.2.2-2 [88.9 kB] Get:417 http://localhost:3142/debian unstable/main amd64 r-cran-stringi amd64 1.5.3-1 [729 kB] Get:418 http://localhost:3142/debian unstable/main amd64 r-cran-stringr all 1.4.0-2 [199 kB] Get:419 http://localhost:3142/debian unstable/main amd64 r-bioc-biomart all 2.44.1+dfsg-1 [414 kB] Get:420 http://localhost:3142/debian unstable/main amd64 r-bioc-zlibbioc all 1.34.0+dfsg-1 [8788 B] Get:421 http://localhost:3142/debian unstable/main amd64 r-bioc-xvector amd64 0.28.0-1 [619 kB] Get:422 http://localhost:3142/debian unstable/main amd64 r-bioc-biostrings amd64 2.56.0-1+b1 [14.2 MB] Get:423 http://localhost:3142/debian unstable/main amd64 r-cran-amap amd64 0.8-18-2+b1 [297 kB] Get:424 http://localhost:3142/debian unstable/main amd64 r-bioc-ctc all 1.62.0-1 [219 kB] Get:425 http://localhost:3142/debian unstable/main amd64 r-cran-matrixstats amd64 0.57.0-1 [647 kB] Get:426 http://localhost:3142/debian unstable/main amd64 r-cran-lattice amd64 0.20-41-1+b1 [1164 kB] Get:427 http://localhost:3142/debian unstable/main amd64 r-cran-matrix amd64 1.2-18-1+b1 [3487 kB] Get:428 http://localhost:3142/debian unstable/main amd64 r-bioc-delayedarray amd64 0.14.1+dfsg-1 [1739 kB] Get:429 http://localhost:3142/debian unstable/main amd64 r-bioc-genomeinfodbdata all 1.2.3-1 [10.4 MB] Get:430 http://localhost:3142/debian unstable/main amd64 r-bioc-genomeinfodb all 1.24.2-1 [3903 kB] Get:431 http://localhost:3142/debian unstable/main amd64 r-bioc-genomicranges amd64 1.40.0+dfsg-1 [1876 kB] Get:432 http://localhost:3142/debian unstable/main amd64 r-bioc-summarizedexperiment all 1.18.2+dfsg-1 [1968 kB] Get:433 http://localhost:3142/debian unstable/main amd64 r-cran-survival amd64 3.2-7-1 [7631 kB] Get:434 http://localhost:3142/debian unstable/main amd64 r-bioc-genefilter amd64 1.70.0-1 [1738 kB] Get:435 http://localhost:3142/debian unstable/main amd64 r-cran-locfit amd64 1.5-9.4-2+b1 [508 kB] Get:436 http://localhost:3142/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get:437 http://localhost:3142/debian unstable/main amd64 r-bioc-geneplotter all 1.66.0-1 [1548 kB] Get:438 http://localhost:3142/debian unstable/main amd64 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get:439 http://localhost:3142/debian unstable/main amd64 r-cran-evaluate all 0.14-2 [81.1 kB] Get:440 http://localhost:3142/debian unstable/main amd64 r-cran-backports amd64 1.1.10-1 [81.0 kB] Get:441 http://localhost:3142/debian unstable/main amd64 r-cran-rprojroot all 1.3-2-3 [97.5 kB] Get:442 http://localhost:3142/debian unstable/main amd64 r-cran-desc all 1.2.0-3 [301 kB] Get:443 http://localhost:3142/debian unstable/main amd64 r-cran-ps amd64 1.4.0-1 [253 kB] Get:444 http://localhost:3142/debian unstable/main amd64 r-cran-processx amd64 3.4.4-1 [295 kB] Get:445 http://localhost:3142/debian unstable/main amd64 r-cran-callr all 3.5.0-1 [381 kB] Get:446 http://localhost:3142/debian unstable/main amd64 r-cran-withr all 2.3.0-1 [209 kB] Get:447 http://localhost:3142/debian unstable/main amd64 r-cran-pkgbuild all 1.1.0-1 [144 kB] Get:448 http://localhost:3142/debian unstable/main amd64 r-cran-rstudioapi all 0.11-2 [249 kB] Get:449 http://localhost:3142/debian unstable/main amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:450 http://localhost:3142/debian unstable/main amd64 r-cran-praise all 1.0.0-4 [20.1 kB] Get:451 http://localhost:3142/debian unstable/main amd64 r-cran-testthat amd64 2.3.2-2+b1 [1069 kB] Get:452 http://localhost:3142/debian unstable/main amd64 r-cran-isoband amd64 0.2.2-1 [2468 kB] Get:453 http://localhost:3142/debian unstable/main amd64 r-cran-mass amd64 7.3-53-1 [1112 kB] Get:454 http://localhost:3142/debian unstable/main amd64 r-cran-nlme amd64 3.1.149-1 [2241 kB] Get:455 http://localhost:3142/debian unstable/main amd64 r-cran-mgcv amd64 1.8-33-1 [2987 kB] Get:456 http://localhost:3142/debian unstable/main amd64 r-cran-farver amd64 2.0.3-1+b1 [1393 kB] Get:457 http://localhost:3142/debian unstable/main amd64 r-cran-labeling all 0.4.2-1 [62.7 kB] Get:458 http://localhost:3142/debian unstable/main amd64 r-cran-colorspace amd64 1.4-1+dfsg-2 [1640 kB] Get:459 http://localhost:3142/debian unstable/main amd64 r-cran-munsell all 0.5.0-2 [236 kB] Get:460 http://localhost:3142/debian unstable/main amd64 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get:461 http://localhost:3142/debian unstable/main amd64 r-cran-scales all 1.1.1-1 [557 kB] Get:462 http://localhost:3142/debian unstable/main amd64 r-cran-ggplot2 all 3.3.2+dfsg-2 [3146 kB] Get:463 http://localhost:3142/debian unstable/main amd64 r-cran-rcpparmadillo amd64 0.10.1.0.0-1 [1142 kB] Get:464 http://localhost:3142/debian unstable/main amd64 r-bioc-deseq2 amd64 1.28.1+dfsg-1 [1274 kB] Get:465 http://localhost:3142/debian unstable/main amd64 r-cran-hwriter all 1.3.2-4 [162 kB] Get:466 http://localhost:3142/debian unstable/main amd64 r-bioc-rhtslib amd64 1.20.0+dfsg-1 [1042 kB] Get:467 http://localhost:3142/debian unstable/main amd64 r-bioc-rsamtools amd64 2.4.0-1 [3788 kB] Get:468 http://localhost:3142/debian unstable/main amd64 r-cran-statmod amd64 1.4.35-1 [255 kB] Get:469 http://localhost:3142/debian unstable/main amd64 r-bioc-dexseq all 1.34.1+dfsg-1 [451 kB] Get:470 http://localhost:3142/debian unstable/main amd64 r-bioc-limma amd64 3.44.3+dfsg-1 [1758 kB] Get:471 http://localhost:3142/debian unstable/main amd64 r-bioc-edger amd64 3.30.3+dfsg-1 [1072 kB] Get:472 http://localhost:3142/debian unstable/main amd64 r-bioc-genomicalignments amd64 1.24.0-1 [2207 kB] Get:473 http://localhost:3142/debian unstable/main amd64 r-bioc-rtracklayer amd64 1.48.0-1 [5035 kB] Err:473 http://localhost:3142/debian unstable/main amd64 r-bioc-rtracklayer amd64 1.48.0-1 Error reading from server - read (104: Connection reset by peer) [IP: 127.0.0.1 3142] Get:474 http://localhost:3142/debian unstable/main amd64 r-bioc-genomicfeatures all 1.40.1+dfsg-1 [1812 kB] Get:475 http://localhost:3142/debian unstable/main amd64 r-bioc-genelendatabase all 1.24.0-1 [100 MB] Get:476 http://localhost:3142/debian unstable/main amd64 r-bioc-go.db all 3.11.4-1 [13.1 MB] Get:477 http://localhost:3142/debian unstable/main amd64 r-cran-biasedurn amd64 1.07-4 [300 kB] Get:478 http://localhost:3142/debian unstable/main amd64 r-bioc-goseq all 1.40.0-1 [1729 kB] Get:479 http://localhost:3142/debian unstable/main amd64 r-cran-plyr amd64 1.8.6-2 [830 kB] Get:480 http://localhost:3142/debian unstable/main amd64 r-cran-reshape2 amd64 1.4.4-2 [114 kB] Get:481 http://localhost:3142/debian unstable/main amd64 r-bioc-qvalue all 2.20.0-1 [2799 kB] Get:482 http://localhost:3142/debian unstable/main amd64 r-bioc-rots amd64 1.16.0-1 [436 kB] Get:483 http://localhost:3142/debian unstable/main amd64 r-bioc-tximport all 1.16.1+dfsg-1 [89.7 kB] Get:484 http://localhost:3142/debian unstable/main amd64 r-cran-ape amd64 5.4-1-1 [2208 kB] Get:485 http://localhost:3142/debian unstable/main amd64 r-cran-findpython all 1.0.5-4 [22.5 kB] Get:486 http://localhost:3142/debian unstable/main amd64 r-cran-argparse all 2.0.1-3 [138 kB] Get:487 http://localhost:3142/debian unstable/main amd64 r-cran-catools amd64 1.18.0-1+b1 [204 kB] Get:488 http://localhost:3142/debian unstable/main amd64 r-cran-clipr all 0.7.1-1 [50.7 kB] Get:489 http://localhost:3142/debian unstable/main amd64 r-cran-cpp11 all 0.2.2-1 [123 kB] Get:490 http://localhost:3142/debian unstable/main amd64 r-cran-fastcluster amd64 1.1.25-3+b4 [184 kB] Get:491 http://localhost:3142/debian unstable/main amd64 r-cran-gtools amd64 3.8.2-1+b1 [329 kB] Get:492 http://localhost:3142/debian unstable/main amd64 r-cran-gdata all 2.18.0-3 [1031 kB] Get:493 http://localhost:3142/debian unstable/main amd64 r-cran-kernsmooth amd64 2.23-17-1+b1 [91.1 kB] Get:494 http://localhost:3142/debian unstable/main amd64 r-cran-gplots all 3.1.0-1 [607 kB] Get:495 http://localhost:3142/debian unstable/main amd64 r-cran-readr amd64 1.4.0-1 [753 kB] Get:496 http://localhost:3142/debian unstable/main amd64 rna-star amd64 2.7.6a+dfsg-1 [585 kB] Get:497 http://localhost:3142/debian unstable/main amd64 sphinx-rtd-theme-common all 0.5.0+dfsg-1 [994 kB] Get:498 http://localhost:3142/debian unstable/main amd64 salmon amd64 1.3.0+ds1-3 [2008 kB] Get:499 http://localhost:3142/debian unstable/main amd64 subread amd64 2.0.1+dfsg-1 [667 kB] Get:500 http://localhost:3142/debian unstable/main amd64 tabix amd64 1.11-2 [338 kB] EFetched 749 MB in 12s (60.0 MB/s) : Failed to fetch http://localhost:3142/debian/pool/main/r/r-bioc-rtracklayer/r-bioc-rtracklayer_1.48.0-1_amd64.deb Error reading from server - read (104: Connection reset by peer) [IP: 127.0.0.1 3142] E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing? apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use Setup apt archive ----------------- Merged Build-Depends: dose-distcheck Filtered Build-Depends: dose-distcheck dpkg-deb: building package 'sbuild-build-depends-dose3-dummy' in '/<>/apt_archive/sbuild-build-depends-dose3-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [739 B] Get:5 copy:/<>/apt_archive ./ Packages [822 B] Fetched 2524 B in 0s (127 kB/s) Reading package lists... Reading package lists... Install dose3 build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: dose-distcheck libcap2 libelf1 liblua5.2-0 libnspr4 libnss3 libpopt0 librpm8 librpmio8 Recommended packages: rpm-common The following NEW packages will be installed: dose-distcheck libcap2 libelf1 liblua5.2-0 libnspr4 libnss3 libpopt0 librpm8 librpmio8 sbuild-build-depends-dose3-dummy 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 4200 kB/5780 kB of archives. After this operation, 14.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-dose3-dummy 0.invalid.0 [856 B] Get:2 http://localhost:3142/debian unstable/main amd64 libcap2 amd64 1:2.44-1 [23.6 kB] Get:3 http://localhost:3142/debian unstable/main amd64 liblua5.2-0 amd64 5.2.4-1.1+b3 [108 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libpopt0 amd64 1.18-1 [49.7 kB] Get:5 http://localhost:3142/debian unstable/main amd64 librpmio8 amd64 4.14.2.1+dfsg1-1.1+b2 [1383 kB] Get:6 http://localhost:3142/debian unstable/main amd64 librpm8 amd64 4.14.2.1+dfsg1-1.1+b2 [1486 kB] Get:7 http://localhost:3142/debian unstable/main amd64 dose-distcheck amd64 5.0.1-15+b3 [1148 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4200 kB in 0s (74.5 MB/s) Selecting previously unselected package libcap2:amd64. (Reading database ... 10542 files and directories currently installed.) Preparing to unpack .../0-libcap2_1%3a2.44-1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1) ... Selecting previously unselected package liblua5.2-0:amd64. Preparing to unpack .../1-liblua5.2-0_5.2.4-1.1+b3_amd64.deb ... Unpacking liblua5.2-0:amd64 (5.2.4-1.1+b3) ... Selecting previously unselected package libpopt0:amd64. Preparing to unpack .../2-libpopt0_1.18-1_amd64.deb ... Unpacking libpopt0:amd64 (1.18-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../3-libelf1_0.181-1_amd64.deb ... Unpacking libelf1:amd64 (0.181-1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../4-libnspr4_2%3a4.29-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.29-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../5-libnss3_2%3a3.58-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.58-1) ... Selecting previously unselected package librpmio8. Preparing to unpack .../6-librpmio8_4.14.2.1+dfsg1-1.1+b2_amd64.deb ... Unpacking librpmio8 (4.14.2.1+dfsg1-1.1+b2) ... Selecting previously unselected package librpm8. Preparing to unpack .../7-librpm8_4.14.2.1+dfsg1-1.1+b2_amd64.deb ... Unpacking librpm8 (4.14.2.1+dfsg1-1.1+b2) ... Selecting previously unselected package dose-distcheck. Preparing to unpack .../8-dose-distcheck_5.0.1-15+b3_amd64.deb ... Unpacking dose-distcheck (5.0.1-15+b3) ... Selecting previously unselected package sbuild-build-depends-dose3-dummy. Preparing to unpack .../9-sbuild-build-depends-dose3-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-dose3-dummy (0.invalid.0) ... Setting up libcap2:amd64 (1:2.44-1) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up liblua5.2-0:amd64 (5.2.4-1.1+b3) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libpopt0:amd64 (1.18-1) ... Setting up libnss3:amd64 (2:3.58-1) ... Setting up librpmio8 (4.14.2.1+dfsg1-1.1+b2) ... Setting up librpm8 (4.14.2.1+dfsg1-1.1+b2) ... Setting up dose-distcheck (5.0.1-15+b3) ... Setting up sbuild-build-depends-dose3-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-4) ... (I)StdLoaders: Parsing and normalizing... (I)Packages: Parsing Packages file -... (I)Format822: total packages 60804 (I)Distcheck: Cudf Universe: 60804 packages (I)Distcheck: --checkonly specified, consider all packages as background packages (I)Distcheck: Solving... output-version: 1.2 native-architecture: amd64 report: - package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: amd64 status: ok installationset: - package: zlib1g-dev version: 1:1.2.11.dfsg-2 architecture: amd64 - package: zlib1g version: 1:1.2.11.dfsg-2 architecture: amd64 - package: zip version: 3.0-11+b1 architecture: amd64 - package: xz-utils version: 5.2.4-1+b1 architecture: amd64 - package: xdg-utils version: 1.1.3-2 architecture: all - package: x11-common version: 1:7.7+21 architecture: all - package: wdiff version: 1.2.2-2+b1 architecture: amd64 - package: util-linux version: 2.36-3+b1 architecture: amd64 essential: true - package: unzip version: 6.0-25 architecture: amd64 - package: ucf version: 3.0043 architecture: all - package: tzdata version: 2020d-1 architecture: all - package: tar version: 1.30+dfsg-7 architecture: amd64 essential: true - package: tabix version: 1.11-2 architecture: amd64 - package: sysvinit-utils version: 2.96-5 architecture: amd64 essential: true - package: subread version: 2.0.1+dfsg-1 architecture: amd64 - package: sphinx-rtd-theme-common version: 0.5.0+dfsg-1 architecture: all - package: sensible-utils version: 0.0.12+nmu1 architecture: all - package: sed version: 4.7-1 architecture: amd64 essential: true - package: sbuild-build-depends-main-dummy version: 0.invalid.0 architecture: amd64 - package: salmon version: 1.3.0+ds1-3 architecture: amd64 - package: rna-star version: 2.7.6a+dfsg-1 architecture: amd64 - package: readline-common version: 8.0-4 architecture: all - package: r-cran-xtable version: 1:1.8-4-2 architecture: all - package: r-cran-xml version: 3.99-0.5-1 architecture: amd64 - package: r-cran-withr version: 2.3.0-1 architecture: all - package: r-cran-viridislite version: 0.3.0-4 architecture: all - package: r-cran-vctrs version: 0.3.4-1 architecture: amd64 - package: r-cran-utf8 version: 1.1.4-2 architecture: amd64 - package: r-cran-tidyselect version: 1.1.0+dfsg-1 architecture: amd64 - package: r-cran-tibble version: 3.0.4-1 architecture: amd64 - package: r-cran-testthat version: 2.3.2-2+b1 architecture: amd64 - package: r-cran-sys version: 3.4-1 architecture: amd64 - package: r-cran-survival version: 3.2-7-1 architecture: amd64 - package: r-cran-stringr version: 1.4.0-2 architecture: all - package: r-cran-stringi version: 1.5.3-1 architecture: amd64 - package: r-cran-statmod version: 1.4.35-1 architecture: amd64 - package: r-cran-snow version: 1:0.4.3-2 architecture: all - package: r-cran-scales version: 1.1.1-1 architecture: all - package: r-cran-rstudioapi version: 0.11-2 architecture: all - package: r-cran-rsqlite version: 2.2.1-1 architecture: amd64 - package: r-cran-rprojroot version: 1.3-2-3 architecture: all - package: r-cran-rlang version: 0.4.8-1 architecture: amd64 - package: r-cran-reshape2 version: 1.4.4-2 architecture: amd64 - package: r-cran-readr version: 1.4.0-1 architecture: amd64 - package: r-cran-rcurl version: 1.98-1.2-1+b1 architecture: amd64 - package: r-cran-rcpparmadillo version: 0.10.1.0.0-1 architecture: amd64 - package: r-cran-rcpp version: 1.0.5-1 architecture: amd64 - package: r-cran-rcolorbrewer version: 1.1-2-3 architecture: all - package: r-cran-rappdirs version: 0.3.1-2 architecture: amd64 - package: r-cran-r6 version: 2.4.1-2 architecture: all - package: r-cran-purrr version: 0.3.4-1+b1 architecture: amd64 - package: r-cran-ps version: 1.4.0-1 architecture: amd64 - package: r-cran-progress version: 1.2.2-2 architecture: all - package: r-cran-processx version: 3.4.4-1 architecture: amd64 - package: r-cran-prettyunits version: 1.1.1-2 architecture: all - package: r-cran-praise version: 1.0.0-4 architecture: all - package: r-cran-plyr version: 1.8.6-2 architecture: amd64 - package: r-cran-plogr version: 0.2.0-3 architecture: all - package: r-cran-pkgload version: 1.1.0-1 architecture: amd64 - package: r-cran-pkgkitten version: 0.2.0-1 architecture: all - package: r-cran-pkgconfig version: 2.0.3-2 architecture: all - package: r-cran-pkgbuild version: 1.1.0-1 architecture: all - package: r-cran-pillar version: 1.4.6-1 architecture: all - package: r-cran-openssl version: 1.4.3+dfsg-1 architecture: amd64 - package: r-cran-nlme version: 3.1.149-1 architecture: amd64 - package: r-cran-munsell version: 0.5.0-2 architecture: all - package: r-cran-mime version: 0.9-1+b1 architecture: amd64 - package: r-cran-mgcv version: 1.8-33-1 architecture: amd64 - package: r-cran-memoise version: 1.1.0-3 architecture: all - package: r-cran-matrixstats version: 0.57.0-1 architecture: amd64 - package: r-cran-matrix version: 1.2-18-1+b1 architecture: amd64 - package: r-cran-mass version: 7.3-53-1 architecture: amd64 - package: r-cran-magrittr version: 1.5-6 architecture: all - package: r-cran-locfit version: 1.5-9.4-2+b1 architecture: amd64 - package: r-cran-littler version: 0.3.12-1 architecture: amd64 - package: r-cran-lifecycle version: 0.2.0-2 architecture: all - package: r-cran-lattice version: 0.20-41-1+b1 architecture: amd64 - package: r-cran-lambda.r version: 1.2.4-2 architecture: all - package: r-cran-labeling version: 0.4.2-1 architecture: all - package: r-cran-kernsmooth version: 2.23-17-1+b1 architecture: amd64 - package: r-cran-jsonlite version: 1.7.1+dfsg-1 architecture: amd64 - package: r-cran-isoband version: 0.2.2-1 architecture: amd64 - package: r-cran-hwriter version: 1.3.2-4 architecture: all - package: r-cran-httr version: 1.4.2-1 architecture: all - package: r-cran-hms version: 0.5.3-2 architecture: all - package: r-cran-gtools version: 3.8.2-1+b1 architecture: amd64 - package: r-cran-gtable version: 0.3.0+dfsg-2 architecture: all - package: r-cran-gplots version: 3.1.0-1 architecture: all - package: r-cran-glue version: 1.4.2-1 architecture: amd64 - package: r-cran-ggplot2 version: 3.3.2+dfsg-2 architecture: all - package: r-cran-generics version: 0.0.2-3 architecture: all - package: r-cran-gdata version: 2.18.0-3 architecture: all - package: r-cran-futile.options version: 1.0.1-3 architecture: all - package: r-cran-futile.logger version: 1.4.3-4 architecture: all - package: r-cran-formatr version: 1.7-2 architecture: all - package: r-cran-findpython version: 1.0.5-4 architecture: all - package: r-cran-fastcluster version: 1.1.25-3+b4 architecture: amd64 - package: r-cran-farver version: 2.0.3-1+b1 architecture: amd64 - package: r-cran-fansi version: 0.4.1-1+b1 architecture: amd64 - package: r-cran-evaluate version: 0.14-2 architecture: all - package: r-cran-ellipsis version: 0.3.1-1 architecture: amd64 - package: r-cran-dplyr version: 1.0.2-1 architecture: amd64 - package: r-cran-digest version: 0.6.26-1 architecture: amd64 - package: r-cran-desc version: 1.2.0-3 architecture: all - package: r-cran-dbplyr version: 1.4.4-1 architecture: all - package: r-cran-dbi version: 1.1.0-3 architecture: all - package: r-cran-curl version: 4.3+dfsg-1+b1 architecture: amd64 - package: r-cran-crayon version: 1.3.4-5 architecture: all - package: r-cran-cpp11 version: 0.2.2-1 architecture: all - package: r-cran-colorspace version: 1.4-1+dfsg-2 architecture: amd64 - package: r-cran-clipr version: 0.7.1-1 architecture: all - package: r-cran-cli version: 2.1.0-1 architecture: all - package: r-cran-catools version: 1.18.0-1+b1 architecture: amd64 - package: r-cran-callr version: 3.5.0-1 architecture: all - package: r-cran-blob version: 1.2.1-2 architecture: all - package: r-cran-bitops version: 1.0-6-5 architecture: amd64 - package: r-cran-bit64 version: 4.0.5-1 architecture: amd64 - package: r-cran-bit version: 4.0.4+dfsg-1 architecture: amd64 - package: r-cran-biasedurn version: 1.07-4 architecture: amd64 - package: r-cran-bh version: 1.66.0-1 architecture: all - package: r-cran-backports version: 1.1.10-1 architecture: amd64 - package: r-cran-assertthat version: 0.2.1-2 architecture: all - package: r-cran-askpass version: 1.1-2 architecture: amd64 - package: r-cran-argparse version: 2.0.1-3 architecture: all - package: r-cran-ape version: 5.4-1-1 architecture: amd64 - package: r-cran-amap version: 0.8-18-2+b1 architecture: amd64 - package: r-bioc-zlibbioc version: 1.34.0+dfsg-1 architecture: all - package: r-bioc-xvector version: 0.28.0-1 architecture: amd64 - package: r-bioc-tximport version: 1.16.1+dfsg-1 architecture: all - package: r-bioc-summarizedexperiment version: 1.18.2+dfsg-1 architecture: all - package: r-bioc-s4vectors version: 0.26.1-1 architecture: amd64 - package: r-bioc-rtracklayer version: 1.48.0-1 architecture: amd64 - package: r-bioc-rsamtools version: 2.4.0-1 architecture: amd64 - package: r-bioc-rots version: 1.16.0-1 architecture: amd64 - package: r-bioc-rhtslib version: 1.20.0+dfsg-1 architecture: amd64 - package: r-bioc-qvalue version: 2.20.0-1 architecture: all - package: r-bioc-limma version: 3.44.3+dfsg-1 architecture: amd64 - package: r-bioc-iranges version: 2.22.2-1 architecture: amd64 - package: r-bioc-goseq version: 1.40.0-1 architecture: all - package: r-bioc-go.db version: 3.11.4-1 architecture: all - package: r-bioc-genomicranges version: 1.40.0+dfsg-1 architecture: amd64 - package: r-bioc-genomicfeatures version: 1.40.1+dfsg-1 architecture: all - package: r-bioc-genomicalignments version: 1.24.0-1 architecture: amd64 - package: r-bioc-genomeinfodbdata version: 1.2.3-1 architecture: all - package: r-bioc-genomeinfodb version: 1.24.2-1 architecture: all - package: r-bioc-geneplotter version: 1.66.0-1 architecture: all - package: r-bioc-genelendatabase version: 1.24.0-1 architecture: all - package: r-bioc-genefilter version: 1.70.0-1 architecture: amd64 - package: r-bioc-edger version: 3.30.3+dfsg-1 architecture: amd64 - package: r-bioc-dexseq version: 1.34.1+dfsg-1 architecture: all - package: r-bioc-deseq2 version: 1.28.1+dfsg-1 architecture: amd64 - package: r-bioc-delayedarray version: 0.14.1+dfsg-1 architecture: amd64 - package: r-bioc-ctc version: 1.62.0-1 architecture: all - package: r-bioc-biostrings version: 2.56.0-1+b1 architecture: amd64 - package: r-bioc-biomart version: 2.44.1+dfsg-1 architecture: all - package: r-bioc-biocparallel version: 1.22.0-2 architecture: amd64 - package: r-bioc-biocgenerics version: 0.34.0-1 architecture: all - package: r-bioc-biocfilecache version: 1.12.1+dfsg-1 architecture: all - package: r-bioc-biobase version: 2.48.0-1 architecture: amd64 - package: r-bioc-annotationdbi version: 1.50.3-1 architecture: all - package: r-bioc-annotate version: 1.66.0+dfsg-1 architecture: all - package: r-base-core version: 4.0.3-1 architecture: amd64 - package: python3.9-minimal version: 3.9.0-5 architecture: amd64 - package: python3.9 version: 3.9.0-5 architecture: amd64 - package: python3.8-minimal version: 3.8.6-1 architecture: amd64 - package: python3.8 version: 3.8.6-1 architecture: amd64 - package: python3-pysam version: 0.15.4+ds-3+b1 architecture: amd64 - package: python3-pkg-resources version: 50.3.0-1 architecture: all - package: python3-numpy version: 1:1.19.2-2+b1 architecture: amd64 - package: python3-minimal version: 3.8.6-1 architecture: amd64 - package: python3-htseq version: 0.12.4-1 architecture: amd64 - 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package: ant-optional version: 1.10.9-1 architecture: all - package: ant version: 1.10.9-1 architecture: all - package: adduser version: 3.118 architecture: all background-packages: 60803 foreground-packages: 1 total-packages: 60804 broken-packages: 0 +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Package build dependencies not satisfied; skipping +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: n/a Build-Time: 0 Distribution: sid Fail-Stage: install-deps Host Architecture: amd64 Install-Time: 0 Job: /srv/debomatic/incoming/trinityrnaseq_2.11.0+dfsg-3.dsc Machine Architecture: amd64 Package: trinityrnaseq Package-Time: 0 Source-Version: 2.11.0+dfsg-3 Space: n/a Status: given-back Version: 2.11.0+dfsg-3 -------------------------------------------------------------------------------- Finished at 2020-10-24T21:39:49Z Build needed 00:00:00, no disk space