sbuild (Debian sbuild) 0.91.10 (27 June 2026) on carme.larted.org.uk +==============================================================================+ | r-bioc-ensembldb 2.36.1+dfsg-1 (amd64) Mon, 21 Sep 2026 15:13:35 +0000 | +==============================================================================+ Package: r-bioc-ensembldb Version: 2.36.1+dfsg-1 Source Version: 2.36.1+dfsg-1 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 21 Sep 2026 15:13:35 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup r-bioc-ensembldb_2.36.1+dfsg-1 sid amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup r-bioc-ensembldb_2.36.1+dfsg-1 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 21 Sep 2026 15:13:36 +0000 | +------------------------------------------------------------------------------+ Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://deb.debian.org/debian sid InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-09-21-1413.33-F-2026-09-21-1413.33.pdiff [80.6 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages T-2026-09-21-1413.33-F-2026-09-21-1413.33.pdiff [80.6 kB] Get:5 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2026-09-21-1413.33-F-2026-09-21-1413.33.pdiff [30.7 kB] Get:6 http://deb.debian.org/debian sid/main Sources T-2026-09-21-1413.33-F-2026-09-21-1413.33.pdiff [30.7 kB] Fetched 624 kB in 7s (94.3 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 21 Sep 2026 15:13:44 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/r-bioc-ensembldb_2.36.1+dfsg-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 21 Sep 2026 15:13:45 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 14), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter, r-cran-rsqlite, r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi, r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors, r-bioc-rsamtools, r-bioc-iranges, r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, build-essential Filtered Build-Depends: debhelper-compat (= 14), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter, r-cran-rsqlite, r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi, r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors, r-bioc-rsamtools, r-bioc-iranges, r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ InRelease Get:2 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ Release [615 B] Ign:3 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ Release.gpg Get:4 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ Sources [1028 B] Get:5 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ Packages [1068 B] Fetched 2711 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran gfortran-16 gfortran-16-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.90-dev libbrotli1 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcom-err2 libconfig-properties-perl libcurl4-gnutls libcurl4t64 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-16-dev libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu78 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1t64 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libparams-classify-perl libparams-someutil-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf7 libpng-dev libpng16-16t64 libproc2-1 libpsl5t64 libreadline-dev libsharpyuv0 libsm6 libssh2-1t64 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libswitch-perl libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxmuu1 libxrender1 libxss1 libxt6t64 libzstd-dev m4 man-db openssl pkgconf pkgconf-bin po-debconf procps r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture sensible-utils tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-multilib gfortran-doc gfortran-16-multilib gfortran-16-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.90-doc libboost-atomic1.90-dev libboost-chrono1.90-dev libboost-container1.90-dev libboost-context1.90-dev libboost-contract1.90-dev libboost-coroutine1.90-dev libboost-date-time1.90-dev libboost-exception1.90-dev libboost-fiber1.90-dev libboost-filesystem1.90-dev libboost-graph-parallel1.90-dev libboost-graph1.90-dev libboost-iostreams1.90-dev libboost-json1.90-dev libboost-locale1.90-dev libboost-log1.90-dev libboost-math1.90-dev libboost-mpi-python1.90-dev libboost-mpi1.90-dev libboost-nowide1.90-dev libboost-numpy1.90-dev libboost-program-options1.90-dev libboost-python1.90-dev libboost-random1.90-dev libboost-regex1.90-dev libboost-serialization1.90-dev libboost-stacktrace1.90-dev libboost-test1.90-dev libboost-thread1.90-dev libboost-timer1.90-dev libboost-type-erasure1.90-dev libboost-url1.90-dev libboost-wave1.90-dev libboost1.90-tools-dev libmpfrc++-dev libntl-dev low-memory-monitor krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-cran-testthat r-cran-rmarkdown r-cran-markdown r-cran-rmysql r-cran-rmpi r-cran-rlecuyer Recommended packages: devscripts cme git-buildpackage curl | wget | lynx python3:any python3-requests bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl krb5-locales libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran gfortran-16 gfortran-16-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.90-dev libbrotli1 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcom-err2 libconfig-properties-perl libcurl4-gnutls libcurl4t64 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate-dev libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-16-dev libgfortran5 libglib2.0-0t64 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu78 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1t64 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-gnutls8 libngtcp2-crypto-ossl0 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libparams-classify-perl libparams-someutil-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf7 libpng-dev libpng16-16t64 libproc2-1 libpsl5t64 libreadline-dev libsharpyuv0 libsm6 libssh2-1t64 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libswitch-perl libtcl8.6 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtimedate-perl libtirpc-common libtirpc-dev libtirpc3t64 libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2-16 libxmuu1 libxrender1 libxss1 libxt6t64 libzstd-dev m4 man-db openssl pkgconf pkgconf-bin po-debconf procps r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-cigarillo r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqinfo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-yaml r-pkg-team-core-architecture sbuild-build-depends-main-dummy sensible-utils tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 262 newly installed, 0 to remove and 0 not upgraded. Need to get 195 MB of archives. After this operation, 645 MB of additional disk space will be used. Get:1 copy:/build/r-bioc-ensembldb-qPkoJH/resolver-LqRM3T/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1032 B] Get:2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.8.4-1 [130 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 tzdata all 2026c-1 [260 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libproc2-1 amd64 2:4.0.7-1 [73.0 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.7-1 [989 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.6.4-1 [1546 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20260816 [134 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.47-4 [345 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.47-4 [111 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.47-4 [43.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 1.0-5 [334 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2+b2 [69.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.24.1-1 [1336 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.42.3-1 [102 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-3 [49.2 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-12+b1 [9344 B] Get:19 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-11 [7788 B] Get:20 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0056 [47.1 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.21-1 [332 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.73-2 [516 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.19-2 [891 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 autopoint all 1.0-5 [820 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 14.5 [77.7 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libtool all 2.6.2-3 [552 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 23 [12.7 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:33 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.196-1 [61.2 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.17-1 [109 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.4+dfsg-1 [683 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 gettext amd64 1.0-5 [2704 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.22 [216 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 debhelper all 14.5 [944 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-16 [239 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-31 [176 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.4 [16.6 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.4 [15.8 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-8 [206 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.2.0-4+b1 [312 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.58-1 [289 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.14.3+dfsg-2 [492 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-9 [840 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.17.1-5 [56.1 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.17.1-5 [132 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1+b2 [259 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1+b2 [20.7 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-2+b1 [28.2 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b2 [144 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.13-1 [346 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.13-1 [829 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b2 [115 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b2 [105 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b4 [50.7 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1+b2 [27.7 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-3+b1 [543 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.17.0-1 [68.1 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.24.0-1 [145 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-3 [31.1 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.4-1+b1 [19.5 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-3 [79.0 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6+b2 [9348 B] Get:70 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-3 [335 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-3 [137 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.70.0-1 [92.7 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.24.0-1 [26.5 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.23.3-1 [61.7 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-6 [253 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.22.0-1 [462 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.25-1 [48.0 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.90.0-1 [1618 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libicu78 amd64 78.3-2 [10.0 MB] Get:80 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:3.1.3-4 [213 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 16.2.0-3 [879 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-8 [2548 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.17.1-5 [191 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-5+b1 [26.2 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.15-2 [75.8 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.3.2-2+b2 [513 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.30-3 [172 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.14-2 [39.1 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.30-3 [51.7 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.58.0-1 [225 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.58.0-1 [53.1 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.58.0-1 [34.2 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.18+dfsg-1 [1053 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b3 [32.2 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.2.0+ds-1 [203 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.6.0-0.1 [116 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.6.0-0.1 [349 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.2-1 [383 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.7+ds-1 [10.0 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.7+ds-1 [82.9 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b5 [54.8 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b4 [17.0 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.18-1 [801 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1+b2 [66.8 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1+b2 [37.9 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3+b2 [191 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.6.1-6 [28.4 MB] Get:109 http://deb.debian.org/debian unstable/main amd64 libgfortran-16-dev amd64 16.2.0-3 [921 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 gfortran-16-x86-64-linux-gnu amd64 16.2.0-3 [14.5 MB] Get:111 http://deb.debian.org/debian unstable/main amd64 gfortran-16 amd64 16.2.0-3 [16.5 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:16.1.0-3 [1276 B] Get:113 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:16.1.0-3 [1436 B] Get:114 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-8 [219 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-8 [5230 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.6+20260608-2 [107 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.6+20260608-2 [356 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.3-4 [163 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:3.1.3-4 [356 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:3.1.3-4 [78.8 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.48-3 [295 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.48-3 [282 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.48-3 [67.2 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.48-3 [880 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.2-3 [918 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.58-1 [372 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6+b2 [33.6 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.4-1 [391 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 78.3-2 [212 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 78.3-2 [11.1 MB] Get:131 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-4+b1 [22.0 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1.1 [35.9 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libpkgconf7 amd64 2.5.1-4 [47.8 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 2.5.1-4 [35.9 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 2.5.1-4 [33.6 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.7+ds-1 [190 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.25-1 [56.7 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-4 [371 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.6.1-6 [2048 B] Get:140 http://deb.debian.org/debian unstable/main amd64 libconfig-properties-perl all 1.80-3 [18.3 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.50-1+b2 [21.6 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3500-1 [64.2 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.08-1 [12.1 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:148 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.37-1 [113 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.04-1 [80.6 kB] Get:151 http://deb.debian.org/debian unstable/main amd64 libparams-someutil-perl amd64 1.11-1 [24.5 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:153 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.115-1 [10.4 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b5 [10.6 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-3+b1 [15.7 kB] Get:157 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b7 [22.7 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:161 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b5 [14.2 kB] Get:164 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:165 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get:166 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get:170 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b2 [24.7 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1.1 [49.5 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get:175 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get:176 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b7 [20.3 kB] Get:178 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.4000-1+b2 [771 kB] Get:179 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.65-1 [45.4 kB] Get:180 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get:181 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-4+b1 [11.3 kB] Get:182 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.28-1+b3 [12.6 kB] Get:183 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:184 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.24.0-1 [23.9 kB] Get:185 http://deb.debian.org/debian unstable/main amd64 libcurl4-gnutls amd64 8.22.0-1 [457 kB] Get:186 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-13+b3 [58.3 kB] Get:187 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get:188 http://deb.debian.org/debian unstable/main amd64 dh-r all 20260707 [40.6 kB] Get:189 http://deb.debian.org/debian unstable/main amd64 libboost1.90-dev amd64 1.90.0-6.1+b1 [11.3 MB] Get:190 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.90.0.2+nmu1 [3200 B] Get:191 http://deb.debian.org/debian unstable/main amd64 r-cran-generics all 0.1.4-1 [84.2 kB] Get:192 http://deb.debian.org/debian unstable/main amd64 r-pkg-team-core-architecture amd64 20260707 [4764 B] Get:193 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.58.1-1 [649 kB] Get:194 http://deb.debian.org/debian unstable/main amd64 r-bioc-biobase amd64 2.72.0-1 [2320 kB] Get:195 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.50.2+dfsg-1 [1851 kB] Get:196 http://deb.debian.org/debian unstable/main amd64 r-bioc-iranges amd64 2.46.0-1 [2336 kB] Get:197 http://deb.debian.org/debian unstable/main amd64 r-cran-dbi all 1.3.0-1 [871 kB] Get:198 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.6.0+dfsg-3 [452 kB] Get:199 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.8.6-1 [592 kB] Get:200 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.3.0-1 [1742 kB] Get:201 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.6-1 [1391 kB] Get:202 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.8.1-2 [172 kB] Get:203 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.5+dfsg-1 [120 kB] Get:204 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.7.3-2 [1983 kB] Get:205 http://deb.debian.org/debian unstable/main amd64 r-cran-blob all 1.3.0-1 [54.1 kB] Get:206 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-3 [79.8 kB] Get:207 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-3 [79.6 kB] Get:208 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-2 [54.3 kB] Get:209 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-3 [21.7 kB] Get:210 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.5-1 [236 kB] Get:211 http://deb.debian.org/debian unstable/main amd64 r-cran-rsqlite amd64 2.4.6-1 [1236 kB] Get:212 http://deb.debian.org/debian unstable/main amd64 r-cran-curl amd64 8.0.0+dfsg-1 [228 kB] Get:213 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 2.0.0+dfsg-2 [447 kB] Get:214 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.13-2 [47.5 kB] Get:215 http://deb.debian.org/debian unstable/main amd64 r-cran-sys amd64 3.4.3-3 [44.4 kB] Get:216 http://deb.debian.org/debian unstable/main amd64 r-cran-askpass amd64 1.2.1-3 [24.5 kB] Get:217 http://deb.debian.org/debian unstable/main amd64 r-cran-openssl amd64 2.4.2+dfsg-1 [402 kB] Get:218 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.6.1-2 [106 kB] Get:219 http://deb.debian.org/debian unstable/main amd64 r-cran-httr all 1.4.8+dfsg-1 [471 kB] Get:220 http://deb.debian.org/debian unstable/main amd64 r-cran-png amd64 0.1-9-1 [42.9 kB] Get:221 http://deb.debian.org/debian unstable/main amd64 r-bioc-xvector amd64 0.52.0-1 [629 kB] Get:222 http://deb.debian.org/debian unstable/main amd64 r-bioc-seqinfo all 1.2.0+dfsg-1 [390 kB] Get:223 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.3-2 [164 kB] Get:224 http://deb.debian.org/debian unstable/main amd64 r-bioc-biostrings amd64 2.80.2+dfsg-1 [13.3 MB] Get:225 http://deb.debian.org/debian unstable/main amd64 r-bioc-keggrest all 1.52.2+dfsg-1 [189 kB] Get:226 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationdbi all 1.74.0-1 [4484 kB] Get:227 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicranges all 1.64.0+dfsg-1 [2087 kB] Get:228 http://deb.debian.org/debian unstable/main amd64 r-cran-lazyeval amd64 0.2.3-1 [170 kB] Get:229 http://deb.debian.org/debian unstable/main amd64 r-bioc-annotationfilter all 1.36.0+dfsg-1 [246 kB] Get:230 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocio all 1.22.0+dfsg-1 [213 kB] Get:231 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-3 [152 kB] Get:232 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-3 [119 kB] Get:233 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-4 [20.6 kB] Get:234 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.9-2 [121 kB] Get:235 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get:236 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get:237 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.90.0-1 [6220 B] Get:238 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocparallel amd64 1.46.0-1 [971 kB] Get:239 http://deb.debian.org/debian unstable/main amd64 r-bioc-cigarillo amd64 1.2.1+dfsg-1 [141 kB] Get:240 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.23-1-1 [1457 kB] Get:241 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-6-1 [4192 kB] Get:242 http://deb.debian.org/debian unstable/main amd64 r-cran-matrixstats amd64 1.5.0-3 [503 kB] Get:243 http://deb.debian.org/debian unstable/main amd64 r-bioc-matrixgenerics all 1.24.0-1 [444 kB] Get:244 http://deb.debian.org/debian unstable/main amd64 r-cran-abind all 1.4-8-1 [68.1 kB] Get:245 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4arrays amd64 1.12.0+dfsg-1 [822 kB] Get:246 http://deb.debian.org/debian unstable/main amd64 r-bioc-sparsearray amd64 1.12.2+dfsg-1 [1407 kB] Get:247 http://deb.debian.org/debian unstable/main amd64 r-bioc-delayedarray all 0.38.2+dfsg-1 [1999 kB] Get:248 http://deb.debian.org/debian unstable/main amd64 r-bioc-ucsc.utils all 1.8.0+dfsg-1 [78.7 kB] Get:249 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomeinfodb all 1.48.0+dfsg-1 [3545 kB] Get:250 http://deb.debian.org/debian unstable/main amd64 r-bioc-summarizedexperiment all 1.42.0+dfsg-1 [1119 kB] Get:251 http://deb.debian.org/debian unstable/main amd64 r-cran-bitops amd64 1.1-0-1 [31.0 kB] Get:252 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhtslib amd64 3.8.0+dfsg-1 [1344 kB] Get:253 http://deb.debian.org/debian unstable/main amd64 r-bioc-rsamtools amd64 2.28.0+dfsg-1+b1 [2625 kB] Get:254 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicalignments amd64 1.48.0+dfsg-1 [1941 kB] Get:255 http://deb.debian.org/debian unstable/main amd64 r-cran-xml amd64 3.99-0.24-1 [1736 kB] Get:256 http://deb.debian.org/debian unstable/main amd64 r-cran-rcurl amd64 1.98-1.20+dfsg-1 [807 kB] Get:257 http://deb.debian.org/debian unstable/main amd64 r-cran-rjson amd64 0.2.23-1+b1 [101 kB] Get:258 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.12-2 [120 kB] Get:259 http://deb.debian.org/debian unstable/main amd64 r-cran-restfulr amd64 0.0.17-1 [392 kB] Get:260 http://deb.debian.org/debian unstable/main amd64 r-bioc-rtracklayer amd64 1.72.0+ds-1+b1 [5183 kB] Get:261 http://deb.debian.org/debian unstable/main amd64 r-bioc-genomicfeatures amd64 1.64.0+dfsg-2 [909 kB] Get:262 http://deb.debian.org/debian unstable/main amd64 r-bioc-protgenerics all 1.44.0-1 [249 kB] Preconfiguring packages ... Fetched 195 MB in 18s (10.7 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 23390 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.8.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.8.4-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2026c-1_all.deb ... Unpacking tzdata (2026c-1) ... Selecting previously unselected package libproc2-1:amd64. Preparing to unpack .../002-libproc2-1_2%3a4.0.7-1_amd64.deb ... Unpacking libproc2-1:amd64 (2:4.0.7-1) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.7-1_amd64.deb ... Unpacking procps (2:4.0.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.6.4-1_amd64.deb ... Unpacking openssl (3.6.4-1) ... 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Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../072-libpsl5t64_0.23.3-1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.23.3-1) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../073-libssh2-1t64_1.11.1-6_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-6) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../074-libcurl4t64_8.22.0-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.22.0-1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../075-libdeflate0_1.25-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.25-1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../076-libglib2.0-0t64_2.90.0-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.90.0-1) ... Selecting previously unselected package libicu78:amd64. Preparing to unpack .../077-libicu78_78.3-2_amd64.deb ... Unpacking libicu78:amd64 (78.3-2) ... 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Setting up libboost-dev:amd64 (1.90.0.2+nmu1) ... Setting up libpaper2:amd64 (2.2.5-0.4) ... Setting up libssh2-1t64:amd64 (1.11.1-6) ... Setting up openssl (3.6.4-1) ... Setting up libdeflate-dev:amd64 (1.25-1) ... Setting up libicu-dev:amd64 (78.3-2) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.37-1) ... Setting up libxmuu1:amd64 (2:1.1.3-4+b1) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.24.0-1) ... Setting up libblas-dev:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libsub-exporter-perl (0.990-1.1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libbz2-dev:amd64 (1.0.8-6+b2) ... Setting up automake (1:1.19-2) ... update-alternatives: using /usr/bin/automake-1.19 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.1-1) ... Setting up libice6:amd64 (2:1.1.1-1+b2) ... Setting up libhttp-date-perl (6.08-1) ... Setting up liblapack3:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.6+20260608-2) ... Setting up gettext (1.0-5) ... Setting up libpcre2-dev:amd64 (10.48-3) ... Setting up libxrender1:amd64 (1:0.9.12-1+b2) ... Setting up libtool (2.6.2-3) ... Setting up fontconfig-config (2.17.1-5) ... Setting up libgfortran-16-dev:amd64 (16.2.0-3) ... Setting up libpng-dev:amd64 (1.6.58-1) ... Setting up libjpeg-dev:amd64 (1:3.1.3-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b4) ... Setting up libpaper-utils (2.2.5-0.4) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:amd64 (8.3-4) ... Setting up libdevel-callchecker-perl:amd64 (0.009-3+b1) ... Setting up pkgconf:amd64 (2.5.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (23) ... Setting up libthai0:amd64 (0.1.30-3) ... Setting up ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 121 added, 0 removed; done. Setting up libfreetype6:amd64 (2.14.3+dfsg-2) ... Setting up liblapack-dev:amd64 (3.12.1-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.22.1-3) ... Setting up ucf (3.0056) ... Setting up gfortran-16-x86-64-linux-gnu (16.2.0-3) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.24.0-1) ... Setting up dh-strip-nondeterminism (1.15.1-1) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.24.1-1) ... Setting up gfortran-16 (16.2.0-3) ... Setting up libharfbuzz0b:amd64 (12.3.2-2+b2) ... Setting up libxss1:amd64 (1:1.2.3-1+b4) ... Setting up libfontconfig1:amd64 (2.17.1-5) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:amd64 (2:1.2.6-1+b2) ... Setting up libhttp-message-perl (7.04-1) ... Setting up libcurl4-gnutls:amd64 (8.22.0-1) ... Setting up fontconfig (2.17.1-5) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.6-1+b5) ... Setting up libcurl4t64:amd64 (8.22.0-1) ... Setting up libtirpc3t64:amd64 (1.3.7+ds-1) ... Setting up po-debconf (1.0.22) ... Setting up libtk8.6:amd64 (8.6.18-1) ... Setting up libparams-classify-perl:amd64 (0.015-2+b7) ... Setting up libpango-1.0-0:amd64 (1.58.0-1) ... Setting up libwww-curl-perl:amd64 (4.17-13+b3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:16.1.0-3) ... Setting up gfortran (4:16.1.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.4-3+b1) ... Setting up libtirpc-dev:amd64 (1.3.7+ds-1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3+b2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:amd64 (1.58.0-1) ... Setting up libpangocairo-1.0-0:amd64 (1.58.0-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (14.5) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.6.1-6) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.3-2) ... Setting up r-cran-futile.options (1.0.1-4) ... Setting up r-cran-lattice (0.23-1-1) ... Setting up r-cran-formatr (1.14-3) ... Setting up r-cran-xml (3.99-0.24-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b5) ... Setting up r-cran-rjson (0.2.23-1+b1) ... Setting up r-cran-r6 (2.6.1-2) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up r-cran-bh (1.90.0-1) ... Setting up r-cran-curl (8.0.0+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-cran-rlang (1.3.0-1) ... Setting up r-cran-matrixstats (1.5.0-3) ... Setting up r-base-dev (4.6.1-6) ... Setting up r-cran-sys (3.4.3-3) ... Setting up r-cran-mime (0.13-2) ... Setting up libmoose-perl:amd64 (2.4000-1+b2) ... Setting up r-cran-generics (0.1.4-1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-yaml (2.3.12-2) ... Setting up r-cran-lambda.r (1.2.4-3) ... Setting up r-cran-dbi (1.3.0-1) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.8.1-2) ... Setting up r-cran-bit (4.6.0+dfsg-3) ... Setting up r-cran-cli (3.6.6-1) ... Setting up r-cran-lifecycle (1.0.5+dfsg-1) ... Setting up r-cran-bitops (1.1-0-1) ... Setting up r-cran-bit64 (4.8.6-1) ... Setting up r-cran-askpass (1.2.1-3) ... Setting up r-cran-fastmap (1.2.0-3) ... Setting up r-cran-png (0.1-9-1) ... Setting up r-cran-jsonlite (2.0.0+dfsg-2) ... Setting up r-cran-pkgconfig (2.0.3-3) ... Setting up r-cran-cpp11 (0.5.5-1) ... Setting up r-cran-futile.logger (1.4.9-2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-6-1) ... Setting up r-cran-cachem (1.1.0-3) ... Setting up r-cran-lazyeval (0.2.3-1) ... Setting up r-cran-rcurl (1.98-1.20+dfsg-1) ... Setting up r-cran-vctrs (0.7.3-2) ... Setting up r-cran-openssl (2.4.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.58.1-1) ... Setting up r-bioc-biocparallel (1.46.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-matrixgenerics (1.24.0-1) ... Setting up r-bioc-rhtslib (3.8.0+dfsg-1) ... Setting up r-bioc-protgenerics (1.44.0-1) ... Setting up r-bioc-biobase (2.72.0-1) ... Setting up r-cran-httr (1.4.8+dfsg-1) ... Setting up r-bioc-s4vectors (0.50.2+dfsg-1) ... Setting up r-cran-memoise (2.0.1-2) ... Setting up r-cran-blob (1.3.0-1) ... Setting up r-bioc-iranges (2.46.0-1) ... Setting up dh-r (20260707) ... Setting up r-cran-rsqlite (2.4.6-1) ... Setting up r-cran-restfulr (0.0.17-1) ... Setting up r-bioc-s4arrays (1.12.0+dfsg-1) ... Setting up r-bioc-ucsc.utils (1.8.0+dfsg-1) ... Setting up r-bioc-biocio (1.22.0+dfsg-1) ... Setting up r-bioc-seqinfo (1.2.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.48.0+dfsg-1) ... Setting up r-bioc-xvector (0.52.0-1) ... Setting up r-bioc-sparsearray (1.12.2+dfsg-1) ... Setting up r-bioc-genomicranges (1.64.0+dfsg-1) ... Setting up r-bioc-biostrings (2.80.2+dfsg-1) ... Setting up r-bioc-annotationfilter (1.36.0+dfsg-1) ... Setting up r-bioc-rsamtools (2.28.0+dfsg-1+b1) ... Setting up r-bioc-cigarillo (1.2.1+dfsg-1) ... Setting up r-bioc-delayedarray (0.38.2+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.42.0+dfsg-1) ... Setting up r-bioc-keggrest (1.52.2+dfsg-1) ... Setting up r-bioc-annotationdbi (1.74.0-1) ... Setting up r-bioc-genomicalignments (1.48.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.72.0+ds-1+b1) ... Setting up r-bioc-genomicfeatures (1.64.0+dfsg-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.43-6) ... Processing triggers for ca-certificates (20260816) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Mon, 21 Sep 2026 15:14:28 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 21 Sep 2026 15:14:28 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 7.0.10-1 (2026-05-27) amd64 (x86_64) Toolchain package versions: binutils_2.47-6 dpkg-dev_1.23.11 g++-13_13.5.0-1 g++-16_16.2.0-3 gcc-13_13.5.0-1 gcc-16_16.2.0-3 libc6-dev_2.43-6 libstdc++-13-dev_13.5.0-1 libstdc++-16-dev_16.2.0-3 libstdc++6_16.2.0-3 linux-libc-dev_7.2.6-1 Package versions: adduser_3.159 apt_3.3.3 autoconf_2.73-2 automake_1:1.19-2 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8 bash_5.3-4 binutils_2.47-6 binutils-common_2.47-6 binutils-x86-64-linux-gnu_2.47-6 bsdextrautils_2.42.3-1 bsdutils_1:2.42.3-1 build-essential_12.12 bzip2_1.0.8-6+b2 ca-certificates_20260816 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-13_13.5.0-1 cpp-13-x86-64-linux-gnu_13.5.0-1 cpp-16_16.2.0-3 cpp-16-x86-64-linux-gnu_16.2.0-3 cpp-x86-64-linux-gnu_4:16.1.0-3 dash_0.5.12-12 dctrl-tools_2.24-3+b1 debconf_1.5.92 debhelper_14.5 debian-archive-keyring_2025.1 debianutils_5.24 dh-autoreconf_23 dh-r_20260707 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1 dirmngr_2.4.9-7+b1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 eatmydata_131-2 file_1:5.47-4 findutils_4.11.0-2 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-9 fonts-dejavu-mono_2.37-9 g++_4:16.1.0-3 g++-13_13.5.0-1 g++-13-x86-64-linux-gnu_13.5.0-1 g++-16_16.2.0-3 g++-16-x86-64-linux-gnu_16.2.0-3 g++-x86-64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-13_13.5.0-1 gcc-13-base_13.5.0-1 gcc-13-x86-64-linux-gnu_13.5.0-1 gcc-14-base_14.4.0-2 gcc-16_16.2.0-3 gcc-16-base_16.2.0-3 gcc-16-x86-64-linux-gnu_16.2.0-3 gcc-x86-64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 gfortran_4:16.1.0-3 gfortran-16_16.2.0-3 gfortran-16-x86-64-linux-gnu_16.2.0-3 gfortran-x86-64-linux-gnu_4:16.1.0-3 gnupg_2.4.9-7 gnupg-l10n_2.4.9-7 gnupg-utils_2.4.9-7+b1 gpg_2.4.9-7+b1 gpg-agent_2.4.9-7+b1 gpg-wks-client_2.4.9-7+b1 gpgconf_2.4.9-7+b1 gpgsm_2.4.9-7+b1 gpgv_2.4.9-7+b1 grep_3.12-1 groff-base_1.24.1-1 gzip_1.14-1 hostname_3.25 icu-devtools_78.3-2 init-system-helpers_1.69+nmu2 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0t64_2.9.29 libapt-pkg7.0_3.3.3 libarchive-zip-perl_1.68-1 libasan8_16.2.0-3 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2+b2 libatomic1_16.2.0-3 libattr1_1:2.6.0-1 libaudit-common_1:4.2.1-1 libaudit1_1:4.2.1-1 libb-hooks-endofscope-perl_0.28-2 libb-hooks-op-check-perl_0.22-3+b5 libbinutils_2.47-6 libblas-dev_3.12.1-8 libblas3_3.12.1-8 libblkid1_2.42.3-1 libboost-dev_1.90.0.2+nmu1 libboost1.90-dev_1.90.0-6.1+b1 libbrotli1_1.2.0-4+b1 libbsd0_0.12.2-3 libbz2-1.0_1.0.8-6+b2 libbz2-dev_1.0.8-6+b2 libc-bin_2.43-6 libc-dev-bin_2.43-6 libc-gconv-modules-extra_2.43-6 libc-l10n_2.43-6 libc6_2.43-6 libc6-dev_2.43-6 libcairo2_1.18.4-3+b1 libcap-ng0_0.9.6-1 libcap2_1:2.78-1+b1 libcc1-0_16.2.0-3 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b5 libclone-perl_0.50-1+b2 libcom-err2_1.47.4-1+b1 libconfig-properties-perl_1.80-3 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47-6 libctf0_2.47-6 libcurl4-gnutls_8.22.0-1 libcurl4t64_8.22.0-1 libdata-optlist-perl_0.115-1 libdatrie1_0.2.14-2 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdeflate-dev_1.25-1 libdeflate0_1.25-1 libdevel-callchecker-perl_0.009-3+b1 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.008-1 libdevel-stacktrace-perl_2.0500-1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.23.11 libdynaloader-functions-perl_0.004-2 libeatmydata1_131-2+b2 libelf1t64_0.196-1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.8.4-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.17.1-5 libfreetype6_2.14.3+dfsg-2 libfribidi0_1.0.16-5+b1 libgcc-13-dev_13.5.0-1 libgcc-16-dev_16.2.0-3 libgcc-s1_16.2.0-3 libgcrypt20_1.12.3-2 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran-16-dev_16.2.0-3 libgfortran5_16.2.0-3 libglib2.0-0t64_2.90.0-1 libgmp10_2:6.3.0+dfsg-5+b2 libgnutls30t64_3.8.13-1 libgomp1_16.2.0-3 libgpg-error0_1.61-5 libgprofng0_2.47-6 libgraphite2-3_1.3.15-2 libgssapi-krb5-2_1.22.1-3 libharfbuzz0b_12.3.2-2+b2 libhogweed6t64_3.10.2-1+b1 libhttp-date-perl_6.08-1 libhttp-message-perl_7.04-1 libhwasan0_16.2.0-3 libice6_2:1.1.1-1+b2 libicu-dev_78.3-2 libicu78_78.3-2 libidn2-0_2.3.8-5 libio-html-perl_1.004-3 libisl23_0.28-1 libitm1_16.2.0-3 libjansson4_2.15.1-1 libjbig0_2.1-6.1+b3 libjpeg-dev_1:3.1.3-4 libjpeg62-turbo_1:3.1.3-4 libjpeg62-turbo-dev_1:3.1.3-4 libk5crypto3_1.22.1-3 libkeyutils1_1.6.3-6+b2 libkrb5-3_1.22.1-3 libkrb5support0_1.22.1-3 libksba8_1.8.1-1 liblapack-dev_3.12.1-8 liblapack3_3.12.1-8 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.14+dfsg-2 liblerc4_4.2.0+ds-1 liblsan0_16.2.0-3 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.10.0-10 liblzma-dev_5.8.4-1 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.2.0-2 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.018-1 libmoose-perl_2.4000-1+b2 libmount1_2.42.3-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.6+20260608-2 libncurses6_6.6+20260608-2 libncursesw6_6.6+20260608-2 libnettle8t64_3.10.2-1+b1 libnghttp2-14_1.70.0-1 libnghttp3-9_1.17.0-1 libngtcp2-16_1.24.0-1 libngtcp2-crypto-gnutls8_1.24.0-1 libngtcp2-crypto-ossl0_1.24.0-1 libnpth0t64_1.8-4 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r-cran-abind_1.4-8-1 r-cran-askpass_1.2.1-3 r-cran-bh_1.90.0-1 r-cran-bit_4.6.0+dfsg-3 r-cran-bit64_4.8.6-1 r-cran-bitops_1.1-0-1 r-cran-blob_1.3.0-1 r-cran-cachem_1.1.0-3 r-cran-cli_3.6.6-1 r-cran-codetools_0.2-20-1 r-cran-cpp11_0.5.5-1 r-cran-crayon_1.5.3-2 r-cran-curl_8.0.0+dfsg-1 r-cran-dbi_1.3.0-1 r-cran-fastmap_1.2.0-3 r-cran-formatr_1.14-3 r-cran-futile.logger_1.4.9-2 r-cran-futile.options_1.0.1-4 r-cran-generics_0.1.4-1 r-cran-glue_1.8.1-2 r-cran-httr_1.4.8+dfsg-1 r-cran-jsonlite_2.0.0+dfsg-2 r-cran-lambda.r_1.2.4-3 r-cran-lattice_0.23-1-1 r-cran-lazyeval_0.2.3-1 r-cran-lifecycle_1.0.5+dfsg-1 r-cran-matrix_1.7-6-1 r-cran-matrixstats_1.5.0-3 r-cran-memoise_2.0.1-2 r-cran-mime_0.13-2 r-cran-openssl_2.4.2+dfsg-1 r-cran-pkgconfig_2.0.3-3 r-cran-png_0.1-9-1 r-cran-r6_2.6.1-2 r-cran-rcurl_1.98-1.20+dfsg-1 r-cran-restfulr_0.0.17-1 r-cran-rjson_0.2.23-1+b1 r-cran-rlang_1.3.0-1 r-cran-rsqlite_2.4.6-1 r-cran-snow_1:0.4.4-2 r-cran-sys_3.4.3-3 r-cran-vctrs_0.7.3-2 r-cran-xml_3.99-0.24-1 r-cran-yaml_2.3.12-2 r-pkg-team-core-architecture_20260707 readline-common_8.3-4 rpcsvc-proto_1.4.4-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-3 sensible-utils_0.0.26 sqv_1.5.0-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 tzdata_2026c-1 ucf_3.0056 unzip_6.0-31 usr-is-merged_39+nmu2 util-linux_2.42.3-1 x11-common_1:7.7+26 xauth_1:1.1.2-1.1 xdg-utils_1.2.1-2 xz-utils_5.8.4-1 zip_3.0-16 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Mon, 21 Sep 2026 15:14:28 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-ensembldb Binary: r-bioc-ensembldb Architecture: all Version: 2.36.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/ensembldb/ Standards-Version: 4.7.4 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-ensembldb Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-ensembldb.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 14), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter, r-cran-rsqlite, r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi, r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors, r-bioc-rsamtools, r-bioc-iranges, r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture Package-List: r-bioc-ensembldb deb gnu-r optional arch=all Checksums-Sha1: aba8d668973e0b44b238d251a7f698d81cdf9213 1113668 r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 6b2abc760c6b9b272f46c78abecb36dee9a00709 6652 r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz Checksums-Sha256: eb1195b3c12b74788aa9ed3fd7c843b9f73fc0448e18d947ab8650715e290bca 1113668 r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 98a97f6b1f408e3164b49ac6e0ba3c3ab1724f6d1e98abcb2df5b3f2755348c7 6652 r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz Files: 153323abfcb0026754f0047a36ad9bef 1113668 r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 10f706f1a303f48725048c65232c8ec4 6652 r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCgAxFiEE3z4uQkp+J5wuSwI6ucKa7rL0UKcFAmp7MBETHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRC5wprusvRQp2JID/9Lu/cbl/Frv4/9nEw1IbxkNZlpd2ea j7kNAxBwdVOpulpynNchxtCswt+FVLkBtmAcf3o+uA4+7hzYsMh7OdxA6YccPCVb MYTeoYEelIguhp5yRO969pYuZncGWeCqPrmFL9mpNIiydWnAqea4BP7PjvlkeHYy l48R1NW8dqXm+v6bhVIobo9G1qXDvz02TnFjCQfVjUBP7KJETtVK8F9RDi+hlIev IYhEpAO0ssStrrGSRtSg32W7e+TAikjBylbSGjL5isvKC3n/im/biv63K7ON9eyI U58b/nvJriB6rpy2f/cefMnKaIX5Dy54GZFac1XRid3gIFvJgn1paWRFFvzC+t/N kj2GxbfAroKt8MbvVRdiO36S/rBgcwSTuxSd9WKOOuabNpynX6eE3rpY+GvjDr5i xZhELJXgxUjRw1OJMCCjsyWcibehHJ3pIrtXfm9zrR+1dN/5xh8Uou0v/cGblyE2 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r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_shebang_line_to_perl_script.patch dpkg-source: info: applying Fix_autopkgtest.patch clean up apt cache ------------------ Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Time Build Commands Mon, 21 Sep 2026 15:14:28 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network r-bioc-ensembldb_2.36.1+dfsg-1 sid amd64 --------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network r-bioc-ensembldb_2.36.1+dfsg-1 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1+dfsg SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-f85197c8-10d6-4995-9eee-765a575f78e9 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package r-bioc-ensembldb dpkg-buildpackage: info: source version 2.36.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh: warning: Implicitly activating single-binary dh addon for backwards compatibility. In compat 15+, dh: warning: this fallback will *not* happen automatically. The dh_auto_install tool will instead use a dh: warning: different default for --destdir unless the single-binary add-on is active, dh: warning: which can cause the source to produce an empty binary package dh: warning: dh: warning: To keep the existing behaviour (compat 13), please activate the single-binary addon explicitly. dh: warning: This can be done by adding "dh-sequence-single-binary" to Build-Depends or passing dh: warning: --with=single-binary to dh. dh: warning: dh: warning: If you have solved this issue differently (e.g., by passing --destdir explicitly to dh: warning: dh_auto_install or not using dh_auto_install at all) and want to silence this warning dh: warning: without activating the addon, you can do that by passing --without=single-binary to dh dh: warning: to explicitly acknowledge the change. dh: warning: dh: warning: Please see the description of the "single-binary" in "man dh" for more details of what dh: warning: it does and why this is changing from implicit behaviour to explicitly opt-in. dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building r-bioc-ensembldb using existing ../r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building r-bioc-ensembldb in ../r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz dpkg-source: info: building r-bioc-ensembldb in ../r-bioc-ensembldb_2.36.1+dfsg-1.dsc debian/rules binary dh binary --buildsystem R dh: warning: Implicitly activating single-binary dh addon for backwards compatibility. In compat 15+, dh: warning: this fallback will *not* happen automatically. The dh_auto_install tool will instead use a dh: warning: different default for --destdir unless the single-binary add-on is active, dh: warning: which can cause the source to produce an empty binary package dh: warning: dh: warning: To keep the existing behaviour (compat 13), please activate the single-binary addon explicitly. dh: warning: This can be done by adding "dh-sequence-single-binary" to Build-Depends or passing dh: warning: --with=single-binary to dh. dh: warning: dh: warning: If you have solved this issue differently (e.g., by passing --destdir explicitly to dh: warning: dh_auto_install or not using dh_auto_install at all) and want to silence this warning dh: warning: without activating the addon, you can do that by passing --without=single-binary to dh dh: warning: to explicitly acknowledge the change. dh: warning: dh: warning: Please see the description of the "single-binary" in "man dh" for more details of what dh: warning: it does and why this is changing from implicit behaviour to explicitly opt-in. dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-ensembldb/ -O--buildsystem=R I: R Package: ensembldb Version: 2.36.1 I: Building using R version 4.6.1-6 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 11 Aug 2026 16:20:47 +0200 mkdir -p /build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1\+dfsg/debian/r-bioc-ensembldb/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1\+dfsg/debian/r-bioc-ensembldb/usr/lib/R/site-library --clean . --built-timestamp="'Tue, 11 Aug 2026 16:20:47 +0200'" * installing *source* package ‘ensembldb’ ... ** this is package ‘ensembldb’ version ‘2.36.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘.cds_for_id2’ in package ‘ensembldb’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ensembldb) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.10) I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.61.1) I: Using r-bioc-genomicfeatures for Depends:GenomicFeatures (>= 1.61.4) I: Using r-bioc-annotationfilter for Depends:AnnotationFilter (>= 1.5.2) W: Cannot find a debian package for Suggests:BiocStyle W: Cannot find a debian package for Suggests:knitr W: Cannot find a debian package for Suggests:EnsDb.Hsapiens.v86 (>= 0.99.8) W: Cannot find a debian package for Suggests:testthat W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.NCBI.GRCh38 W: Cannot find a debian package for Suggests:ggbio (>= 1.24.0) W: Cannot find a debian package for Suggests:Gviz (>= 1.20.0) W: Cannot find a debian package for Suggests:rmarkdown W: Cannot find a debian package for Suggests:AnnotationHub I: Using r-cran-rsqlite for Imports:RSQLite (>= 1.1) I: Using r-cran-dbi for Imports:DBI I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-seqinfo for Imports:Seqinfo I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.45.5) I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.31.19) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.69.1) I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.23.10) I: Using r-bioc-rsamtools for Imports:Rsamtools I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.24) I: Using r-bioc-protgenerics for Imports:ProtGenerics I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.77.2) I: Using r-cran-curl for Imports:curl I: BioConductor API version: r-api-bioc-3.23 I: Use r-bioc-ensembldb as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_missing -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1+dfsg' dh_fixperms find debian -name "*.pl" -exec chmod +x \{\} \; make[1]: Leaving directory '/build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1+dfsg' dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_computeautosubstvars -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: Depends field of package r-bioc-ensembldb: substitution variable ${misc:Depends} used, but is not defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-ensembldb' in '../r-bioc-ensembldb_2.36.1+dfsg-1_all.deb'. dpkg-genbuildinfo -O../r-bioc-ensembldb_2.36.1+dfsg-1_amd64.buildinfo dpkg-genchanges -O../r-bioc-ensembldb_2.36.1+dfsg-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2026-09-21T15:15:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 21 Sep 2026 15:15:05 +0000 | +------------------------------------------------------------------------------+ r-bioc-ensembldb_2.36.1+dfsg-1_amd64.changes: --------------------------------------------- Format: 1.8 Date: Tue, 11 Aug 2026 16:20:47 +0200 Source: r-bioc-ensembldb Binary: r-bioc-ensembldb Architecture: source all Version: 2.36.1+dfsg-1 Distribution: sid Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Steffen Moeller Description: r-bioc-ensembldb - GNU R utilities to create and use an Ensembl based annotation dat Changes: r-bioc-ensembldb (2.36.1+dfsg-1) unstable; urgency=medium . * Team upload. * Removed build/ from source tree via Files-Excluded * New upstream version * Standards-Version: 4.7.4 (routine-update) * Restrict to R packages team core architectures (routine-update) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) Checksums-Sha1: f89e280e8ef05b76872354a288c85fa976c25dd2 1624 r-bioc-ensembldb_2.36.1+dfsg-1.dsc aba8d668973e0b44b238d251a7f698d81cdf9213 1113668 r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 6f217f8019e42aa005e47d3b247241d00e7d20cc 6656 r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz 14c1c5e10b441bb277e50a92a0bfea470edc5de8 1499628 r-bioc-ensembldb_2.36.1+dfsg-1_all.deb eb8271146b7f58d17f9839ce8a46c9985f81c9de 12721 r-bioc-ensembldb_2.36.1+dfsg-1_amd64.buildinfo Checksums-Sha256: 8486ceaa316437f1dadeeb080995fccbf3e22d1fd1a7c023090f633d16b07f51 1624 r-bioc-ensembldb_2.36.1+dfsg-1.dsc eb1195b3c12b74788aa9ed3fd7c843b9f73fc0448e18d947ab8650715e290bca 1113668 r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 2d08850b57e9f0d47b593eaad885f3f86cd0f630b9ca4ce341a545cf316b97a4 6656 r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz c21bbe32367eb4c8889aa61c9aa6db9bd3585871f9621873af9080c4969ad9ce 1499628 r-bioc-ensembldb_2.36.1+dfsg-1_all.deb 44616e410c632fdf4b2fd975eeb897092046ec5319dfda5d4e3d2bd7f8608c83 12721 r-bioc-ensembldb_2.36.1+dfsg-1_amd64.buildinfo Files: ba26111b0dce7917f50df1ed657beb16 1624 gnu-r optional r-bioc-ensembldb_2.36.1+dfsg-1.dsc 153323abfcb0026754f0047a36ad9bef 1113668 gnu-r optional r-bioc-ensembldb_2.36.1+dfsg.orig.tar.xz 197604b4cc2c8612233670837ef75787 6656 gnu-r optional r-bioc-ensembldb_2.36.1+dfsg-1.debian.tar.xz c861eda31f76fbe12e447968f8ccf09b 1499628 gnu-r optional r-bioc-ensembldb_2.36.1+dfsg-1_all.deb 2f59e80e51f5226e3e06842ffb5038e3 12721 gnu-r optional r-bioc-ensembldb_2.36.1+dfsg-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Mon, 21 Sep 2026 15:15:05 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-ensembldb Binary: r-bioc-ensembldb Architecture: all source Version: 2.36.1+dfsg-1 Checksums-Md5: ba26111b0dce7917f50df1ed657beb16 1624 r-bioc-ensembldb_2.36.1+dfsg-1.dsc c861eda31f76fbe12e447968f8ccf09b 1499628 r-bioc-ensembldb_2.36.1+dfsg-1_all.deb Checksums-Sha1: f89e280e8ef05b76872354a288c85fa976c25dd2 1624 r-bioc-ensembldb_2.36.1+dfsg-1.dsc 14c1c5e10b441bb277e50a92a0bfea470edc5de8 1499628 r-bioc-ensembldb_2.36.1+dfsg-1_all.deb Checksums-Sha256: 8486ceaa316437f1dadeeb080995fccbf3e22d1fd1a7c023090f633d16b07f51 1624 r-bioc-ensembldb_2.36.1+dfsg-1.dsc c21bbe32367eb4c8889aa61c9aa6db9bd3585871f9621873af9080c4969ad9ce 1499628 r-bioc-ensembldb_2.36.1+dfsg-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 21 Sep 2026 15:15:04 +0000 Build-Path: /build/r-bioc-ensembldb-qPkoJH/r-bioc-ensembldb-2.36.1+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.73-2), automake (= 1:1.19-2), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8), bash (= 5.3-4), binutils (= 2.47-6), binutils-common (= 2.47-6), binutils-x86-64-linux-gnu (= 2.47-6), bsdextrautils (= 2.42.3-1), build-essential (= 12.12), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260816), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-13 (= 13.5.0-1), cpp-13-x86-64-linux-gnu (= 13.5.0-1), cpp-16 (= 16.2.0-3), cpp-16-x86-64-linux-gnu (= 16.2.0-3), cpp-x86-64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12), dctrl-tools (= 2.24-3+b1), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-r (= 20260707), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-2), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-mono (= 2.37-9), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-3), g++-16-x86-64-linux-gnu (= 16.2.0-3), g++-x86-64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-13 (= 13.5.0-1), gcc-13-base (= 13.5.0-1), gcc-13-x86-64-linux-gnu (= 13.5.0-1), gcc-16 (= 16.2.0-3), gcc-16-base (= 16.2.0-3), gcc-16-x86-64-linux-gnu (= 16.2.0-3), gcc-x86-64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), gfortran (= 4:16.1.0-3), gfortran-16 (= 16.2.0-3), gfortran-16-x86-64-linux-gnu (= 16.2.0-3), gfortran-x86-64-linux-gnu (= 4:16.1.0-3), grep (= 3.12-1), groff-base (= 1.24.1-1), gzip (= 1.14-1), hostname (= 3.25), icu-devtools (= 78.3-2), init-system-helpers (= 1.69+nmu2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-3), libatomic1 (= 16.2.0-3), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.2.1-1), libaudit1 (= 1:4.2.1-1), libb-hooks-endofscope-perl (= 0.28-2), libb-hooks-op-check-perl (= 0.22-3+b5), libbinutils (= 2.47-6), libblas-dev (= 3.12.1-8), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.3-1), libboost-dev (= 1.90.0.2+nmu1), libboost1.90-dev (= 1.90.0-6.1+b1), libbrotli1 (= 1.2.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libbz2-dev (= 1.0.8-6+b2), libc-bin (= 2.43-6), libc-dev-bin (= 2.43-6), libc-gconv-modules-extra (= 2.43-6), libc6 (= 2.43-6), libc6-dev (= 2.43-6), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.6-1), libcc1-0 (= 16.2.0-3), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2+b5), libclone-perl (= 0.50-1+b2), libcom-err2 (= 1.47.4-1+b1), libconfig-properties-perl (= 1.80-3), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47-6), libctf0 (= 2.47-6), libcurl4-gnutls (= 8.22.0-1), libcurl4t64 (= 8.22.0-1), libdata-optlist-perl (= 0.115-1), libdatrie1 (= 0.2.14-2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdevel-callchecker-perl (= 0.009-3+b1), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.008-1), libdevel-stacktrace-perl (= 2.0500-1), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.23.11), libdynaloader-functions-perl (= 0.004-2), libelf1t64 (= 0.196-1), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.8.4-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.17.1-5), libfreetype6 (= 2.14.3+dfsg-2), libfribidi0 (= 1.0.16-5+b1), libgcc-13-dev (= 13.5.0-1), libgcc-16-dev (= 16.2.0-3), libgcc-s1 (= 16.2.0-3), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran-16-dev (= 16.2.0-3), libgfortran5 (= 16.2.0-3), libglib2.0-0t64 (= 2.90.0-1), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-3), libgprofng0 (= 2.47-6), libgraphite2-3 (= 1.3.15-2), libgssapi-krb5-2 (= 1.22.1-3), libharfbuzz0b (= 12.3.2-2+b2), libhogweed6t64 (= 3.10.2-1+b1), libhttp-date-perl (= 6.08-1), libhttp-message-perl (= 7.04-1), libhwasan0 (= 16.2.0-3), libice6 (= 2:1.1.1-1+b2), libicu-dev (= 78.3-2), libicu78 (= 78.3-2), libidn2-0 (= 2.3.8-5), libio-html-perl (= 1.004-3), libisl23 (= 0.28-1), libitm1 (= 16.2.0-3), libjansson4 (= 2.15.1-1), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libk5crypto3 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack-dev (= 3.12.1-8), liblapack3 (= 3.12.1-8), libldap2 (= 2.6.14+dfsg-2), liblerc4 (= 4.2.0+ds-1), liblsan0 (= 16.2.0-3), liblwp-mediatypes-perl (= 6.04-2), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.2.0-2), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.018-1), libmoose-perl (= 2.4000-1+b2), libmount1 (= 2.42.3-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.6+20260608-2), libncurses6 (= 6.6+20260608-2), libncursesw6 (= 6.6+20260608-2), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-crypto-ossl0 (= 1.24.0-1), libp11-kit0 (= 0.26.5-1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1+b7), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpango-1.0-0 (= 1.58.0-1), libpangocairo-1.0-0 (= 1.58.0-1), libpangoft2-1.0-0 (= 1.58.0-1), libpaper-utils (= 2.2.5-0.4), libpaper2 (= 2.2.5-0.4), libparams-classify-perl (= 0.015-2+b7), libparams-someutil-perl (= 1.11-1), libparams-util-perl (= 1.102-3+b2), libpcre2-16-0 (= 10.48-3), libpcre2-32-0 (= 10.48-3), libpcre2-8-0 (= 10.48-3), libpcre2-dev (= 10.48-3), libpcre2-posix3 (= 10.48-3), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpng-dev (= 1.6.58-1), libpng16-16t64 (= 1.6.58-1), libproc2-1 (= 2:4.0.7-1), libpsl5t64 (= 0.23.3-1), libquadmath0 (= 16.2.0-3), libreadline-dev (= 8.3-4), libreadline8t64 (= 8.3-4), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libseccomp2 (= 2.6.1-1+b1), libselinux1 (= 3.11-2), libsframe3 (= 2.47-6), libsharpyuv0 (= 1.6.0-0.1), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.3-1), libssh2-1t64 (= 1.11.1-6), libssl3t64 (= 3.6.4-1), libstdc++-16-dev (= 16.2.0-3), libstdc++6 (= 16.2.0-3), libsub-exporter-perl (= 0.990-1.1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-4+b1), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.28-1+b3), libswitch-perl (= 2.17-3), libsystemd0 (= 262~rc3-1), libtasn1-6 (= 4.21.0-2+b1), libtcl8.6 (= 8.6.18+dfsg-1), libtext-charwidth-perl (= 0.04-12+b1), libtext-wrapi18n-perl (= 0.06-11), libthai-data (= 0.1.30-3), libthai0 (= 0.1.30-3), libtiff6 (= 4.7.2-1), libtimedate-perl (= 2.3500-1), libtinfo6 (= 6.6+20260608-2), libtirpc-common (= 1.3.7+ds-1), libtirpc-dev (= 1.3.7+ds-1), libtirpc3t64 (= 1.3.7+ds-1), libtk8.6 (= 8.6.18-1), libtool (= 2.6.2-3), libtry-tiny-perl (= 0.32-1), libtsan2 (= 16.2.0-3), libubsan1 (= 16.2.0-3), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262~rc3-1), libunistring5 (= 1.4.2-1), liburi-perl (= 5.37-1), libuuid1 (= 2.42.3-1), libvariable-magic-perl (= 0.65-1), libwebp7 (= 1.6.0-0.1), libwww-curl-perl (= 4.17-13+b3), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libxau6 (= 1:1.0.11-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxft2 (= 2.3.6-1+b5), libxml2-16 (= 2.15.4+dfsg-1), libxmuu1 (= 2:1.1.3-4+b1), libxrender1 (= 1:0.9.12-1+b2), libxss1 (= 1:1.2.3-1+b4), libxt6t64 (= 1:1.2.1-1.3+b2), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.6-1), m4 (= 1.4.21-1), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20260302-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), openssl (= 3.6.4-1), openssl-provider-legacy (= 3.6.4-1), patch (= 2.8-2), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.7-1), r-base-core (= 4.6.1-6), r-base-dev (= 4.6.1-6), r-bioc-annotationdbi (= 1.74.0-1), r-bioc-annotationfilter (= 1.36.0+dfsg-1), r-bioc-biobase (= 2.72.0-1), r-bioc-biocgenerics (= 0.58.1-1), r-bioc-biocio (= 1.22.0+dfsg-1), r-bioc-biocparallel (= 1.46.0-1), r-bioc-biostrings (= 2.80.2+dfsg-1), r-bioc-cigarillo (= 1.2.1+dfsg-1), r-bioc-delayedarray (= 0.38.2+dfsg-1), r-bioc-genomeinfodb (= 1.48.0+dfsg-1), r-bioc-genomicalignments (= 1.48.0+dfsg-1), r-bioc-genomicfeatures (= 1.64.0+dfsg-2), r-bioc-genomicranges (= 1.64.0+dfsg-1), r-bioc-iranges (= 2.46.0-1), r-bioc-keggrest (= 1.52.2+dfsg-1), r-bioc-matrixgenerics (= 1.24.0-1), r-bioc-protgenerics (= 1.44.0-1), r-bioc-rhtslib (= 3.8.0+dfsg-1), r-bioc-rsamtools (= 2.28.0+dfsg-1+b1), r-bioc-rtracklayer (= 1.72.0+ds-1+b1), r-bioc-s4arrays (= 1.12.0+dfsg-1), r-bioc-s4vectors (= 0.50.2+dfsg-1), r-bioc-seqinfo (= 1.2.0+dfsg-1), r-bioc-sparsearray (= 1.12.2+dfsg-1), r-bioc-summarizedexperiment (= 1.42.0+dfsg-1), r-bioc-ucsc.utils (= 1.8.0+dfsg-1), r-bioc-xvector (= 0.52.0-1), r-cran-abind (= 1.4-8-1), r-cran-askpass (= 1.2.1-3), r-cran-bh (= 1.90.0-1), r-cran-bit (= 4.6.0+dfsg-3), r-cran-bit64 (= 4.8.6-1), r-cran-bitops (= 1.1-0-1), r-cran-blob (= 1.3.0-1), r-cran-cachem (= 1.1.0-3), r-cran-cli (= 3.6.6-1), r-cran-codetools (= 0.2-20-1), r-cran-cpp11 (= 0.5.5-1), r-cran-crayon (= 1.5.3-2), r-cran-curl (= 8.0.0+dfsg-1), r-cran-dbi (= 1.3.0-1), r-cran-fastmap (= 1.2.0-3), r-cran-formatr (= 1.14-3), r-cran-futile.logger (= 1.4.9-2), r-cran-futile.options (= 1.0.1-4), r-cran-generics (= 0.1.4-1), r-cran-glue (= 1.8.1-2), r-cran-httr (= 1.4.8+dfsg-1), r-cran-jsonlite (= 2.0.0+dfsg-2), r-cran-lambda.r (= 1.2.4-3), r-cran-lattice (= 0.23-1-1), r-cran-lazyeval (= 0.2.3-1), r-cran-lifecycle (= 1.0.5+dfsg-1), r-cran-matrix (= 1.7-6-1), r-cran-matrixstats (= 1.5.0-3), r-cran-memoise (= 2.0.1-2), r-cran-mime (= 0.13-2), r-cran-openssl (= 2.4.2+dfsg-1), r-cran-pkgconfig (= 2.0.3-3), r-cran-png (= 0.1-9-1), r-cran-r6 (= 2.6.1-2), r-cran-rcurl (= 1.98-1.20+dfsg-1), r-cran-restfulr (= 0.0.17-1), r-cran-rjson (= 0.2.23-1+b1), r-cran-rlang (= 1.3.0-1), r-cran-rsqlite (= 2.4.6-1), r-cran-snow (= 1:0.4.4-2), r-cran-sys (= 3.4.3-3), r-cran-vctrs (= 0.7.3-2), r-cran-xml (= 3.99-0.24-1), r-cran-yaml (= 2.3.12-2), r-pkg-team-core-architecture (= 20260707), readline-common (= 8.3-4), sed (= 4.9-3), sensible-utils (= 0.0.26), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), tzdata (= 2026c-1), ucf (= 3.0056), unzip (= 6.0-31), util-linux (= 2.42.3-1), x11-common (= 1:7.7+26), xauth (= 1:1.1.2-1.1), xdg-utils (= 1.2.1-2), xz-utils (= 5.8.4-1), zip (= 3.0-16), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LANGUAGE="en_GB:en" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" LD_PRELOAD="libeatmydata.so" SOURCE_DATE_EPOCH="1786458047" +------------------------------------------------------------------------------+ | Package contents Mon, 21 Sep 2026 15:15:05 +0000 | +------------------------------------------------------------------------------+ r-bioc-ensembldb_2.36.1+dfsg-1_all.deb -------------------------------------- new Debian package, version 2.0. size 1499628 bytes: control archive=2664 bytes. 1447 bytes, 19 lines control 5077 bytes, 58 lines md5sums Package: r-bioc-ensembldb Version: 2.36.1+dfsg-1 Architecture: all Maintainer: Debian R Packages Maintainers Installed-Size: 2337 Depends: r-api-4.0, r-api-bioc-3.23, r-bioc-biocgenerics (>= 0.15.10), r-bioc-genomicranges (>= 1.61.1), r-bioc-genomicfeatures (>= 1.61.4), r-bioc-annotationfilter (>= 1.5.2), r-cran-rsqlite (>= 1.1), r-cran-dbi, r-bioc-biobase, r-bioc-seqinfo, r-bioc-genomeinfodb (>= 1.45.5), r-bioc-annotationdbi (>= 1.31.19), r-bioc-rtracklayer (>= 1.69.1), r-bioc-s4vectors (>= 0.23.10), r-bioc-rsamtools, r-bioc-iranges (>= 2.13.24), r-bioc-protgenerics, r-bioc-biostrings (>= 2.77.2), r-cran-curl, r-pkg-team-core-architecture, perl:any Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ensembldb/ Description: GNU R utilities to create and use an Ensembl based annotation database The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes. drwxr-xr-x root/root 0 2026-08-11 14:20 ./ drwxr-xr-x root/root 0 2026-08-11 14:20 ./usr/ drwxr-xr-x root/root 0 2026-08-11 14:20 ./usr/lib/ drwxr-xr-x root/root 0 2026-08-11 14:20 ./usr/lib/R/ drwxr-xr-x root/root 0 2026-08-11 14:20 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2026-08-11 14:20 ./usr/lib/R/site-library/ensembldb/ -rw-r--r-- root/root 766 2026-08-11 14:20 ./usr/lib/R/site-library/ensembldb/CITATION -rw-r--r-- root/root 3489 2026-08-11 14:20 ./usr/lib/R/site-library/ensembldb/DESCRIPTION -rw-r--r-- root/root 2271 2026-08-11 14:20 ./usr/lib/R/site-library/ensembldb/INDEX drwxr-xr-x root/root 0 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./usr/share/doc/r-bioc-ensembldb/copyright +------------------------------------------------------------------------------+ | Post Build Mon, 21 Sep 2026 15:15:05 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 21 Sep 2026 15:15:05 +0000 | +------------------------------------------------------------------------------+ Purging /build/r-bioc-ensembldb-qPkoJH Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 21 Sep 2026 15:15:07 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 8064 Build-Time: 36 Distribution: sid Host Architecture: amd64 Install-Time: 43 Job: /srv/debomatic/incoming/r-bioc-ensembldb_2.36.1+dfsg-1.dsc Machine Architecture: amd64 Package: r-bioc-ensembldb Package-Time: 89 Source-Version: 2.36.1+dfsg-1 Space: 8064 Status: successful Version: 2.36.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2026-09-21T15:15:04Z Build needed 00:01:29, 8064k disk space