sbuild (Debian sbuild) 0.79.1 (22 April 2020) on carme.larted.org.uk +==============================================================================+ | librcsb-core-wrapper 1.005-8 (amd64) Sun, 04 Oct 2020 15:26:35 +0000 | +==============================================================================+ Package: librcsb-core-wrapper Version: 1.005-8 Source Version: 1.005-8 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-debomatic-43f99055-eff1-4f4c-aeae-c37769db16a8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librcsb-core-wrapper_1.005-8 sid amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup librcsb-core-wrapper_1.005-8 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/librcsb-core-wrapper-9u4Prq/resolver-l8n3vB' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [146 kB] Get:2 http://localhost:3142/debian sid InRelease [146 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages 2020-10-04-0800.48.pdiff [1707 B] Get:5 http://localhost:3142/debian unstable/main amd64 Packages 2020-10-04-1401.12.pdiff [13.4 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages 2020-10-04-1401.12.pdiff [13.4 kB] Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [27.9 kB] Get:7 http://localhost:3142/debian sid/main Sources 2020-10-04-0800.48.pdiff [4026 B] Get:8 http://localhost:3142/debian sid/main Sources 2020-10-04-1401.12.pdiff [12.1 kB] Get:8 http://localhost:3142/debian sid/main Sources 2020-10-04-1401.12.pdiff [12.1 kB] Fetched 380 kB in 1s (293 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/librcsb-core-wrapper_1.005-8.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/librcsb-core-wrapper-9u4Prq/librcsb-core-wrapper-1.005' with '<>' I: NOTICE: Log filtering will replace 'build/librcsb-core-wrapper-9u4Prq' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 10), doxygen, graphviz, dh-python, libboost-python-dev, libxerces-c-dev, python3-all-dev, libtool, libtool-bin, bison, flex, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 10), doxygen, graphviz, dh-python, libboost-python-dev, libxerces-c-dev, python3-all-dev, libtool, libtool-bin, bison, flex, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [430 B] Get:5 copy:/<>/apt_archive ./ Packages [515 B] Fetched 1902 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils build-essential debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dpkg-dev dwz fakeroot file flex fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 gcc gcc-10 gettext gettext-base graphviz groff-base icu-devtools intltool-debian libann0 libarchive-zip-perl libasan5 libasan6 libboost-python-dev libboost-python1.71-dev libboost-python1.71.0 libboost1.71-dev libbrotli1 libbsd0 libc6-dev libcairo2 libcdt5 libcgraph6 libclang-cpp9 libclang1-9 libcroco3 libcrypt-dev libcurl3-gnutls libdatrie1 libdebhelper-perl libdpkg-perl libedit2 libelf1 libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-9-dev libgd3 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu-dev libicu67 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libllvm9 libltdl7 libmagic-mgc libmagic1 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-10-dev libstdc++-9-dev libsub-override-perl libthai-data libthai0 libtiff5 libtool libtool-bin libubsan1 libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libz3-4 m4 man-db mime-support perl perl-modules-5.30 po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dev python3.8-minimal sensible-utils ucf x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc dh-make doxygen-latex doxygen-doc doxygen-gui debian-keyring flex-doc g++-multilib g++-10-multilib gcc-10-doc gcc-multilib manpages-dev gdb gcc-doc gcc-10-multilib gcc-10-locales gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libboost1.71-doc gccxml libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev glibc-doc git bzr libgd-tools krb5-doc krb5-user icu-doc libstdc++-10-doc libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libxerces-c-doc m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support Recommended packages: libalgorithm-merge-perl libfl-dev curl | wget | lynx fonts-liberation ca-certificates libfile-fcntllock-perl liblocale-gettext-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales publicsuffix libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils build-essential debhelper dh-autoreconf dh-python dh-strip-nondeterminism doxygen dpkg-dev dwz fakeroot file flex fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 gcc gcc-10 gettext gettext-base graphviz groff-base icu-devtools intltool-debian libann0 libarchive-zip-perl libasan5 libasan6 libboost-python-dev libboost-python1.71-dev libboost-python1.71.0 libboost1.71-dev libbrotli1 libbsd0 libc6-dev libcairo2 libcdt5 libcgraph6 libclang-cpp9 libclang1-9 libcroco3 libcrypt-dev libcurl3-gnutls libdatrie1 libdebhelper-perl libdpkg-perl libedit2 libelf1 libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-10-dev libgcc-9-dev libgd3 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu-dev libicu67 libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 libllvm9 libltdl7 libmagic-mgc libmagic1 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libperl5.30 libpipeline1 libpixman-1-0 libpng16-16 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-10-dev libstdc++-9-dev libsub-override-perl libthai-data libthai0 libtiff5 libtool libtool-bin libubsan1 libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxerces-c-dev libxerces-c3.2 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libz3-4 m4 man-db mime-support perl perl-modules-5.30 po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-main-dummy sensible-utils ucf x11-common zlib1g-dev 0 upgraded, 157 newly installed, 0 to remove and 0 not upgraded. Need to get 160 MB of archives. After this operation, 782 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://localhost:3142/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://localhost:3142/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:12 http://localhost:3142/debian unstable/main amd64 flex amd64 2.6.4-8 [440 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.6-1 [761 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.2.10-1 [96.9 kB] Get:16 http://localhost:3142/debian unstable/main amd64 python3.8-minimal amd64 3.8.6-1 [1863 kB] Get:17 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:18 http://localhost:3142/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1720 kB] Get:20 http://localhost:3142/debian unstable/main amd64 python3.8 amd64 3.8.6-1 [422 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:22 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:23 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:26 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:27 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:28 http://localhost:3142/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:29 http://localhost:3142/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:30 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:31 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:32 http://localhost:3142/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:33 http://localhost:3142/debian unstable/main amd64 bison amd64 2:3.7.2+dfsg-1 [1097 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libasan6 amd64 10.2.0-13 [340 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 10.2.0-13 [134 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libgcc-10-dev amd64 10.2.0-13 [2327 kB] Get:39 http://localhost:3142/debian unstable/main amd64 gcc-10 amd64 10.2.0-13 [15.9 MB] Get:40 http://localhost:3142/debian unstable/main amd64 gcc amd64 4:10.2.0-1 [5196 B] Get:41 http://localhost:3142/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-13 [1738 kB] Get:42 http://localhost:3142/debian unstable/main amd64 g++-10 amd64 10.2.0-13 [8670 kB] Get:43 http://localhost:3142/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:44 http://localhost:3142/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:45 http://localhost:3142/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:46 http://localhost:3142/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:47 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:55 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libglib2.0-0 amd64 2.66.0-2 [1361 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:60 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:61 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:62 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:63 http://localhost:3142/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:64 http://localhost:3142/debian unstable/main amd64 python3-lib2to3 all 3.8.5-1 [78.4 kB] Get:65 http://localhost:3142/debian unstable/main amd64 python3-distutils all 3.8.5-1 [145 kB] Get:66 http://localhost:3142/debian unstable/main amd64 dh-python all 4.20200925 [98.3 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libedit2 amd64 3.1-20191231-1 [95.4 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libz3-4 amd64 4.8.9-1 [6783 kB] Get:70 http://localhost:3142/debian unstable/main amd64 libllvm9 amd64 1:9.0.1-14 [15.0 MB] Get:71 http://localhost:3142/debian unstable/main amd64 libclang-cpp9 amd64 1:9.0.1-14 [8415 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libclang1-9 amd64 1:9.0.1-14 [6722 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libxapian30 amd64 1.4.17-1 [1089 kB] Get:74 http://localhost:3142/debian unstable/main amd64 doxygen amd64 1.8.20-4 [4180 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.25.2-1 [46.9 kB] Get:76 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.25.2-1 [86.8 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2 [287 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:79 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.10.2+dfsg-3 [409 kB] Get:80 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:81 http://localhost:3142/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:83 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libann0 amd64 1.1.2+doc-7 [25.3 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libcdt5 amd64 2.42.2-4 [60.7 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libcgraph6 amd64 2.42.2-4 [85.0 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.0.5-1.1 [149 kB] Get:88 http://localhost:3142/debian unstable/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libwebp6 amd64 0.6.1-2+b1 [261 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libtiff5 amd64 4.1.0+git191117-2 [271 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.14-2 [139 kB] Get:94 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.6.12-1 [311 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.6.12-1 [770 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libgd3 amd64 2.3.0-2 [137 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4+b1 [158 kB] Get:99 http://localhost:3142/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:100 http://localhost:3142/debian unstable/main amd64 libxcb-render0 amd64 1.14-2 [111 kB] Get:101 http://localhost:3142/debian unstable/main amd64 libxcb-shm0 amd64 1.14-2 [101 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:104 http://localhost:3142/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libltdl7 amd64 2.4.6-14 [390 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfribidi0 amd64 1.0.8-2 [64.8 kB] Get:107 http://localhost:3142/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:108 http://localhost:3142/debian unstable/main amd64 libharfbuzz0b amd64 2.6.7-1 [1467 kB] Get:109 http://localhost:3142/debian unstable/main amd64 libthai-data all 0.1.28-3 [170 kB] Get:110 http://localhost:3142/debian unstable/main amd64 libdatrie1 amd64 0.2.12-3 [39.5 kB] Get:111 http://localhost:3142/debian unstable/main amd64 libthai0 amd64 0.1.28-3 [54.2 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libpango-1.0-0 amd64 1.46.2-1 [191 kB] Get:113 http://localhost:3142/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.46.2-1 [61.2 kB] Get:114 http://localhost:3142/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.46.2-1 [50.0 kB] Get:115 http://localhost:3142/debian unstable/main amd64 libpathplan4 amd64 2.42.2-4 [63.9 kB] Get:116 http://localhost:3142/debian unstable/main amd64 libgvc6 amd64 2.42.2-4 [691 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libgvpr2 amd64 2.42.2-4 [211 kB] Get:118 http://localhost:3142/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-4 [221 kB] Get:119 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+20 [252 kB] Get:120 http://localhost:3142/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:121 http://localhost:3142/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libxt6 amd64 1:1.2.0-1 [189 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:125 http://localhost:3142/debian unstable/main amd64 graphviz amd64 2.42.2-4 [630 kB] Get:126 http://localhost:3142/debian unstable/main amd64 icu-devtools amd64 67.1-4 [201 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libasan5 amd64 9.3.0-18 [390 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libgcc-9-dev amd64 9.3.0-18 [2347 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-18 [1702 kB] Get:130 http://localhost:3142/debian unstable/main amd64 libboost1.71-dev amd64 1.71.0-6+b2 [9097 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libboost-python1.71.0 amd64 1.71.0-6+b2 [304 kB] Get:132 http://localhost:3142/debian unstable/main amd64 libpython3.8 amd64 3.8.6-1 [1608 kB] Get:133 http://localhost:3142/debian unstable/main amd64 libexpat1-dev amd64 2.2.10-1 [140 kB] Get:134 http://localhost:3142/debian unstable/main amd64 libpython3.8-dev amd64 3.8.6-1 [3840 kB] Get:135 http://localhost:3142/debian unstable/main amd64 libpython3-dev amd64 3.8.2-3 [21.0 kB] Get:136 http://localhost:3142/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get:137 http://localhost:3142/debian unstable/main amd64 python3.8-dev amd64 3.8.6-1 [515 kB] Get:138 http://localhost:3142/debian unstable/main amd64 python3-dev amd64 3.8.2-3 [1164 B] Get:139 http://localhost:3142/debian unstable/main amd64 libboost-python1.71-dev amd64 1.71.0-6+b2 [326 kB] Get:140 http://localhost:3142/debian unstable/main amd64 libboost-python-dev amd64 1.71.0.3 [4428 B] Get:141 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.17-10 [64.6 kB] Get:142 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.17-10 [115 kB] Get:143 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:144 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.17-10 [366 kB] Get:145 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.17-10 [156 kB] Get:146 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.41.0-3 [74.0 kB] Get:147 http://localhost:3142/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.1 [55.3 kB] Get:148 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:149 http://localhost:3142/debian unstable/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libcurl3-gnutls amd64 7.72.0-1 [333 kB] Get:151 http://localhost:3142/debian unstable/main amd64 libicu-dev amd64 67.1-4 [9593 kB] Get:152 http://localhost:3142/debian unstable/main amd64 libpython3-all-dev amd64 3.8.2-3 [1068 B] Get:153 http://localhost:3142/debian unstable/main amd64 libtool-bin amd64 2.4.6-14 [432 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libxerces-c3.2 amd64 3.2.3+debian-1+b1 [885 kB] Get:155 http://localhost:3142/debian unstable/main amd64 libxerces-c-dev amd64 3.2.3+debian-1+b1 [1689 kB] Get:156 http://localhost:3142/debian unstable/main amd64 python3-all amd64 3.8.2-3 [1056 B] Get:157 http://localhost:3142/debian unstable/main amd64 python3-all-dev amd64 3.8.2-3 [1064 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 160 MB in 1s (146 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libedit2:amd64 (3.1-20191231-1) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-3) ... Setting up libxcb-shm0:amd64 (1.14-2) ... Setting up libgcc-9-dev:amd64 (9.3.0-18) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up perl (5.30.3-4) ... Setting up libexpat1-dev:amd64 (2.2.10-1) ... Setting up libfreetype6:amd64 (2.10.2+dfsg-3) ... Setting up libpython3.8:amd64 (3.8.6-1) ... Setting up libgssapi-krb5-2:amd64 (1.17-10) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up gcc-10 (10.2.0-13) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libgvpr2:amd64 (2.42.2-4) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up bison (2:3.7.2+dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libsub-override-perl (0.09-2) ... Setting up libx11-6:amd64 (2:1.6.12-1) ... Setting up libharfbuzz0b:amd64 (2.6.7-1) ... Setting up python3-lib2to3 (3.8.5-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libllvm9:amd64 (1:9.0.1-14) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.5-1) ... Setting up dh-python (4.20200925) ... Setting up flex (2.6.4-8) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++-10-dev:amd64 (10.2.0-13) ... Setting up g++-10 (10.2.0-13) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-18) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libtool (2.4.6-14) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libclang1-9 (1:9.0.1-14) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libclang-cpp9 (1:9.0.1-14) ... Setting up libdebhelper-perl (13.2.1) ... Setting up libboost1.71-dev:amd64 (1.71.0-6+b2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3-all (3.8.2-3) ... Setting up libcurl3-gnutls:amd64 (7.72.0-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gcc (4:10.2.0-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up doxygen (1.8.20-4) ... Setting up libpython3.8-dev:amd64 (3.8.6-1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up python3.8-dev (3.8.6-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.8) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool-bin (2.4.6-14) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libpython3-dev:amd64 (3.8.2-3) ... Setting up libxerces-c3.2:amd64 (3.2.3+debian-1+b1) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.46.2-1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up libxerces-c-dev:amd64 (3.2.3+debian-1+b1) ... Setting up libpython3-all-dev:amd64 (3.8.2-3) ... Setting up python3-dev (3.8.2-3) ... Setting up libgd3:amd64 (2.3.0-2) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libpangoft2-1.0-0:amd64 (1.46.2-1) ... Setting up libpangocairo-1.0-0:amd64 (1.46.2-1) ... Setting up python3-all-dev (3.8.2-3) ... Setting up libboost-python1.71-dev (1.71.0-6+b2) ... Setting up libboost-python-dev (1.71.0.3) ... Setting up libgvc6 (2.42.2-4) ... Setting up graphviz (2.42.2-4) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.7.0-2-amd64 #1 SMP Debian 5.7.10-1 (2020-07-26) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-1 dpkg-dev_1.20.5 g++-10_10.2.0-13 gcc-10_10.2.0-13 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-13 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-13 linux-libc-dev_5.8.10-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35.1-1 binutils-common_2.35.1-1 binutils-x86-64-linux-gnu_2.35.1-1 bison_2:3.7.2+dfsg-1 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-13 cpp-7_7.5.0-6 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 doxygen_1.8.20-4 dpkg_1.20.5 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 eatmydata_105-9 fakeroot_1.25.2-1 fdisk_2.36-3+b1 file_1:5.38-5 findutils_4.7.0-1 flex_2.6.4-8 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.0-1 g++-10_10.2.0-13 gcc_4:10.2.0-1 gcc-10_10.2.0-13 gcc-10-base_10.2.0-13 gcc-7-base_7.5.0-6 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-18 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 graphviz_2.42.2-4 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 icu-devtools_67.1-4 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libann0_1.1.2+doc-7 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan4_7.5.0-6 libasan5_9.3.0-18 libasan6_10.2.0-13 libassuan0_2.5.3-7.1 libatomic1_10.2.0-13 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35.1-1 libblkid1_2.36-3+b1 libboost-python-dev_1.71.0.3 libboost-python1.71-dev_1.71.0-6+b2 libboost-python1.71.0_1.71.0-6+b2 libboost1.71-dev_1.71.0-6+b2 libbrotli1_1.0.9-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-dev_2.31-3 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-13 libcdt5_2.42.2-4 libcgraph6_2.42.2-4 libcilkrts5_7.5.0-6 libclang-cpp9_1:9.0.1-14 libclang1-9_1:9.0.1-14 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-1 libctf0_2.35.1-1 libcurl3-gnutls_7.72.0-1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5 libeatmydata1_105-9 libedit2_3.1-20191231-1 libelf1_0.181-1 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.2-1 libfdisk1_2.36-3+b1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libfontconfig1_2.13.1-4.2 libfreetype6_2.10.2+dfsg-3 libfribidi0_1.0.8-2 libgcc-10-dev_10.2.0-13 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-13 libgcrypt20_1.8.6-2 libgd3_2.3.0-2 libgdbm-compat4_1.18.1-5.1 libgdbm5_1.14.1-6+b1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 libgomp1_10.2.0-13 libgpg-error0_1.38-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.17-10 libgts-0.7-5_0.7.6+darcs121130-4+b1 libgvc6_2.42.2-4 libgvpr2_2.42.2-4 libharfbuzz0b_2.6.7-1 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libice6_2:1.0.10-1 libicu-dev_67.1-4 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-13 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.5-1.1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2 libkrb5-3_1.17-10 libkrb5support0_1.17-10 libksba8_1.4.0-2 liblab-gamut1_2.42.2-4 libldap-2.4-2_2.4.53+dfsg-1 libldap-common_2.4.53+dfsg-1 libllvm9_1:9.0.1-14 liblsan0_10.2.0-13 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3+b1 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2+20200918-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libnghttp2-14_1.41.0-3 libnpth0_1.6-2 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpango-1.0-0_1.46.2-1 libpangocairo-1.0-0_1.46.2-1 libpangoft2-1.0-0_1.46.2-1 libpathplan4_2.42.2-4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.26_5.26.2-7+b1 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpixman-1-0_0.36.0-1 libpng16-16_1.6.37-3 libpsl5_0.21.0-1.1 libpython3-all-dev_3.8.2-3 libpython3-dev_3.8.2-3 libpython3-stdlib_3.8.2-3 libpython3.8_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libquadmath0_10.2.0-13 libreadline7_7.0-5 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.4-1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.36-3+b1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1g-1 libstdc++-10-dev_10.2.0-13 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-13 libsub-override-perl_0.09-2 libsystemd0_246.6-1 libtasn1-6_4.16.0-2 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2 libtinfo6_6.2+20200918-1 libtool_2.4.6-14 libtool-bin_2.4.6-14 libtsan0_10.2.0-13 libubsan0_7.5.0-6 libubsan1_10.2.0-13 libuchardet0_0.0.7-1 libudev1_246.6-1 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libwebp6_0.6.1-2+b1 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxapian30_1.4.17-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxerces-c-dev_3.2.3+debian-1+b1 libxerces-c3.2_3.2.3+debian-1+b1 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-6 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.2.0-1 libz3-4_4.8.9-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.10-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 netbase_6.1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.26_5.26.2-7 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4 po-debconf_1.0.21 python3_3.8.2-3 python3-all_3.8.2-3 python3-all-dev_3.8.2-3 python3-dev_3.8.2-3 python3-distutils_3.8.5-1 python3-lib2to3_3.8.5-1 python3-minimal_3.8.2-3 python3.8_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3+b1 x11-common_1:7.7+20 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librcsb-core-wrapper Binary: librcsb-core-wrapper0, librcsb-core-wrapper0-dev, librcsb-core-wrapper-doc, python3-corepywrap Architecture: any all Version: 1.005-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/librcsb-core-wrapper Vcs-Git: https://salsa.debian.org/med-team/librcsb-core-wrapper.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 10), doxygen, graphviz, dh-python, libboost-python-dev, libxerces-c-dev, python3-all-dev, libtool, libtool-bin, bison, flex Package-List: librcsb-core-wrapper-doc deb doc optional arch=all librcsb-core-wrapper0 deb libs optional arch=any librcsb-core-wrapper0-dev deb libdevel optional arch=any python3-corepywrap deb python optional arch=any Checksums-Sha1: f59c664981896bac055ec340d7e92406220cc5a1 1835295 librcsb-core-wrapper_1.005.orig.tar.gz 6931f4615596b8f0183701decbef10be592e2c3c 20296 librcsb-core-wrapper_1.005-8.debian.tar.xz Checksums-Sha256: 345c40aad147bd551b20b1582602ae465bdf485ce1fe351632509a3cf75f0be2 1835295 librcsb-core-wrapper_1.005.orig.tar.gz f4fcda1348d6be95d897d2130138f444f2de2db238de448d59bebea02859258e 20296 librcsb-core-wrapper_1.005-8.debian.tar.xz Files: 871203f9ce4b6a1bfb71a565073a5731 1835295 librcsb-core-wrapper_1.005.orig.tar.gz 2c53d301b787ee6283ed6ae3c89e28ef 20296 librcsb-core-wrapper_1.005-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3+i8oRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEfmA/+Lo2hOjmRCTZStpSZ2x6+RulSg3z/LcZc NAePhNJvQOWKMuNCeqrfSSDdzUu2MfUXtxLO9RZ+0jlxKsWx9XBRL2PV1ETtE1L6 TC5apJq9X8Y0BkV0tu5enNw+I7qWlU0Pap8Wvb/VKLM08aTC8XkwAbARa2ikaBii 0yoD1G77NFLCyZQkTMDhYpwoxggPxfIvTyTp49Zu3xbcFw9aaq1+cC5/zMiYpUkX 5Sv5aSS/T7qR0h3N6ZAcNw02+mHa8oiz6GpAoPOkSExp3LbLNY2IAgVRehlte0xY V1rnkku3qQfb8nyP+V8XHCO8apjq11GbHl2hzgidV36f2LjGsyCK9rcnIHDIrmzq JeZSie3oDXNTzU5nDtkSW+3d6emydx9EOWxlQfqU9KNR8GvXHd5vefr+CdemRHM+ tBgnjtjTNUgT+i8GYGKCkYDzw9+vjtuOj3V0kEeOmV9k/LLz20aFTfAPUpPKP3hP JMi3G67NguC412RLRawsXsFhl+0pI0kjfgDb6Ze3e3Habe36bMHWPsHQUXrdrzpr 7V/IER+UJWsRp6bHZ4RXp3Q1k4X/M5/N70wbhrs/FtPnZc2sPzS6G6dfLjB2U+AL 6mOoc/CvHT+8ByO8dmaiSL4louVhQARgE4Bjt4XKdQshOI7kZmpxQkfWFb83cHpx lpa/HbYxHJ0= =oFK+ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZvR5r4Qo/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 21 21:16:58 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librcsb-core-wrapper_1.005-8.dsc dpkg-source: info: extracting librcsb-core-wrapper in /<> dpkg-source: info: unpacking librcsb-core-wrapper_1.005.orig.tar.gz dpkg-source: info: unpacking librcsb-core-wrapper_1.005-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying wrapper-module dpkg-source: info: applying rm-duplicate-module dpkg-source: info: applying bash dpkg-source: info: applying unistd dpkg-source: info: applying devnull-log dpkg-source: info: applying docs dpkg-source: info: applying objectfiles dpkg-source: info: applying parallel-build dpkg-source: info: applying setup.py.in dpkg-source: info: applying hardening dpkg-source: info: applying spelling dpkg-source: info: applying exit-in-shlib dpkg-source: info: applying make_test_target dpkg-source: info: applying regcomp_cert_fix.patch dpkg-source: info: applying gcc5.patch dpkg-source: info: applying xerces32.patch dpkg-source: info: applying gcc-8.patch dpkg-source: info: applying python3.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librcsb-core-wrapper_1.005-8 sid amd64 ------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network librcsb-core-wrapper_1.005-8 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1001/bus HOME=/sbuild-nonexistent LANG=C LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=112 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-43f99055-eff1-4f4c-aeae-c37769db16a8 SCHROOT_UID=1001 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_CLASS=background XDG_SESSION_ID=c3929474 XDG_SESSION_TYPE=unspecified dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package librcsb-core-wrapper dpkg-buildpackage: info: source version 1.005-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 clean make[2]: Entering directory '/<>' ------------------------------------------------------------ **** Cleaning etc **** ------------------------------------------------------------ ------------------------------------------------------------ **** Cleaning common **** ------------------------------------------------------------ make[3]: Entering directory '/<>/common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/common' ------------------------------------------------------------ **** Cleaning tables **** ------------------------------------------------------------ make[3]: Entering directory '/<>/tables' rm -rf docs make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/tables' ------------------------------------------------------------ **** Cleaning regex **** ------------------------------------------------------------ make[3]: Entering directory '/<>/regex' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf rcsb ------------------------------------------------------------ **** Cleaning test results in dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/<>/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/dict-obj-file' ------------------------------------------------------------ **** Cleaning test results in pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/<>/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/pdbml-parser' make[3]: Leaving directory '/<>/regex' ------------------------------------------------------------ **** Cleaning cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cif-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/cif-file' ------------------------------------------------------------ **** Cleaning cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cif-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/cif-parser' ------------------------------------------------------------ **** Cleaning cif-file-util **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cif-file-util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/cif-file-util' ------------------------------------------------------------ **** Cleaning dict-obj-file **** ------------------------------------------------------------ make[3]: Entering directory '/<>/dict-obj-file' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/dict-obj-file' ------------------------------------------------------------ **** Cleaning pdbml-parser **** ------------------------------------------------------------ make[3]: Entering directory '/<>/pdbml-parser' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/pdbml-parser' ------------------------------------------------------------ **** Cleaning cctbx **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cctbx' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Leaving directory '/<>/cctbx' make[2]: Leaving directory '/<>' rm -rf wrapper/python/build make[1]: Leaving directory '/<>' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building librcsb-core-wrapper using existing ./librcsb-core-wrapper_1.005.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: warning: ignoring deletion of file dict-obj-file/test/mmcif_std.odb, use --include-removal to override dpkg-source: info: building librcsb-core-wrapper in librcsb-core-wrapper_1.005-8.debian.tar.xz dpkg-source: info: building librcsb-core-wrapper in librcsb-core-wrapper_1.005-8.dsc debian/rules build dh build --with python3 dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j4 make[2]: Entering directory '/<>' sh -c '\ export PIC=-fPIC; \ export WWPDB_XERCESC_INC=/usr/include; \ export WWPDB_XERCESC_LIB_DIR=/usr/lib; \ export WWPDB_XERCESC_LIB=xerces-c; \ ( cd ./util; ./compile.sh ); \ libtool --mode=link g++ -version-info 0:1:0 -rpath /usr/lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -l${WWPDB_XERCESC_LIB} -o lib/librcsb-core-wrapper.la lib/*.lo' ------------------------------------------------------------ **** Making etc **** ------------------------------------------------------------ Using platform specific configuration for system: gnu2 Platform configuration done. ------------------------------------------------------------ **** Making common **** ------------------------------------------------------------ make[3]: Entering directory '/<>/common' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbFile.C -fPIC -DPIC -o ./obj/.libs/RcsbFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbPlatform.C -fPIC -DPIC -o ./obj/.libs/RcsbPlatform.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Serializer.C -fPIC -DPIC -o ./obj/.libs/Serializer.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbPlatform.C -o ./obj/RcsbPlatform.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/BlockIO.C -fPIC -DPIC -o ./obj/.libs/BlockIO.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenString.C -o ./obj/GenString.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenString.C -fPIC -DPIC -o ./obj/.libs/GenString.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/RcsbFile.C -o ./obj/RcsbFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/BlockIO.C -o ./obj/BlockIO.o >/dev/null 2>&1 src/GenString.C: In static member function ‘static bool String::IsNumber(const string&)’: src/GenString.C:539:12: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 539 | catch (exception) | ^~~~~~~~~ libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifString.C -o ./obj/CifString.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifString.C -fPIC -DPIC -o ./obj/.libs/CifString.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenCont.C -fPIC -DPIC -o ./obj/.libs/GenCont.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenString.C -o ./obj/GenString.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifString.C -o ./obj/CifString.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/GenCont.C -o ./obj/GenCont.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Serializer.C -o ./obj/Serializer.o >/dev/null 2>&1 libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Exceptions.C -fPIC -DPIC -o ./obj/.libs/Exceptions.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DataInfo.C -fPIC -DPIC -o ./obj/.libs/DataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/Exceptions.C -o ./obj/Exceptions.o >/dev/null 2>&1 libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_ptr_vector.C -fPIC -DPIC -o ./obj/.libs/mapped_ptr_vector.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_vector.C -o ./obj/mapped_vector.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/mapped_ptr_vector.C -o ./obj/mapped_ptr_vector.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DataInfo.C -o ./obj/DataInfo.o >/dev/null 2>&1 a - RcsbPlatform.o a - RcsbFile.o a - BlockIO.o a - Serializer.o a - GenString.o a - CifString.o a - GenCont.o a - Exceptions.o a - DataInfo.o a - mapped_vector.o a - mapped_ptr_vector.o cp -f -t ../lib ./obj/RcsbPlatform.o ./obj/RcsbFile.o ./obj/BlockIO.o ./obj/Serializer.o ./obj/GenString.o ./obj/CifString.o ./obj/GenCont.o ./obj/Exceptions.o ./obj/DataInfo.o ./obj/mapped_vector.o ./obj/mapped_ptr_vector.o ./obj/RcsbPlatform.lo ./obj/RcsbFile.lo ./obj/BlockIO.lo ./obj/Serializer.lo ./obj/GenString.lo ./obj/CifString.lo ./obj/GenCont.lo ./obj/Exceptions.lo ./obj/DataInfo.lo ./obj/mapped_vector.lo ./obj/mapped_ptr_vector.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/RcsbPlatform.o ./obj/.libs/RcsbFile.o ./obj/.libs/BlockIO.o ./obj/.libs/Serializer.o ./obj/.libs/GenString.o ./obj/.libs/CifString.o ./obj/.libs/GenCont.o ./obj/.libs/Exceptions.o ./obj/.libs/DataInfo.o ./obj/.libs/mapped_vector.o ./obj/.libs/mapped_ptr_vector.o true lib/common.a lib/common.a is up to date. ../etc/cifinstall -m 0444 ./lib/common.a ../lib x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o x - RcsbPlatform.o x - RcsbFile.o x - BlockIO.o x - Serializer.o x - GenString.o x - CifString.o x - GenCont.o x - Exceptions.o x - DataInfo.o x - mapped_vector.o x - mapped_ptr_vector.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/<>/common' ------------------------------------------------------------ **** Making tables **** ------------------------------------------------------------ make[3]: Entering directory '/<>/tables' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TTable.C -o ./obj/TTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ITTable.C -fPIC -DPIC -o ./obj/.libs/ITTable.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TTable.C -fPIC -DPIC -o ./obj/.libs/TTable.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ISTable.C -fPIC -DPIC -o ./obj/.libs/ISTable.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TableFile.C -fPIC -DPIC -o ./obj/.libs/TableFile.o src/TableFile.C: In member function ‘std::string TableFile::GetFirstBlockName()’: src/TableFile.C:474:12: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 474 | catch (out_of_range) | ^~~~~~~~~~~~ src/ISTable.C: In member function ‘bool ISTable::IsColumnPresent(const string&)’: src/ISTable.C:228:12: warning: catching polymorphic type ‘class NotFoundException’ by value [-Wcatch-value=] 228 | catch (NotFoundException) | ^~~~~~~~~~~~~~~~~ src/ISTable.C: In member function ‘unsigned int ISTable::InsertRow(unsigned int, const std::vector >&)’: src/ISTable.C:649:20: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 649 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::AppendToColumn(unsigned int, const string&)’: src/ITTable.C:169:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 169 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::ClearColumn(unsigned int)’: src/ITTable.C:244:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 244 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘unsigned int ITTable::InsertRow(unsigned int, const std::vector >&)’: src/ITTable.C:326:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 326 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ISTable.C: In function ‘std::ostream& operator<<(std::ostream&, const ISTable&)’: src/ISTable.C:1826:20: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=] 1826 | catch (out_of_range) | ^~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::FillRow(unsigned int, const std::vector >&)’: src/ITTable.C:362:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 362 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::ClearRow(unsigned int)’: src/ITTable.C:439:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 439 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::FillColumn(unsigned int, std::vector >::const_iterator, std::vector >::const_iterator)’: src/ITTable.C:1645:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1645 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘void ITTable::AppendToColumn(unsigned int, const std::vector >&)’: src/ITTable.C:1714:16: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1714 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ src/ITTable.C: In member function ‘int ITTable::UpdateCell(const string&, unsigned int, unsigned int)’: src/ITTable.C:1759:12: warning: catching polymorphic type ‘class AlreadyExistsException’ by value [-Wcatch-value=] 1759 | catch (AlreadyExistsException) | ^~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TTable.C -o ./obj/TTable.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/TableFile.C -o ./obj/TableFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ITTable.C -o ./obj/ITTable.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ISTable.C -o ./obj/ISTable.o >/dev/null 2>&1 a - TTable.o a - ITTable.o a - ISTable.o a - TableFile.o cp -f -t ../lib ./obj/TTable.o ./obj/ITTable.o ./obj/ISTable.o ./obj/TableFile.o ./obj/TTable.lo ./obj/ITTable.lo ./obj/ISTable.lo ./obj/TableFile.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/TTable.o ./obj/.libs/ITTable.o ./obj/.libs/ISTable.o ./obj/.libs/TableFile.o true lib/tables.a lib/tables.a is up to date. ../etc/cifinstall -m 0444 ./lib/tables.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - mapped_ptr_vector.o x - mapped_vector.o x - TTable.o x - ITTable.o x - ISTable.o x - TableFile.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/<>/tables' ------------------------------------------------------------ **** Making regex **** ------------------------------------------------------------ make[3]: Entering directory '/<>/regex' libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -fPIC -DPIC -o ./obj/.libs/regexec.o In file included from src/regexec.c:46: src/engine.c: In function ‘sdissect’: src/engine.c:251:17: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^~ In file included from src/regexec.c:95: src/engine.c: In function ‘ldissect’: src/engine.c:251:17: warning: variable ‘dp’ set but not used [-Wunused-but-set-variable] 251 | register char *dp; | ^~ libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -fPIC -DPIC -o ./obj/.libs/regerror.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -fPIC -DPIC -o ./obj/.libs/regcomp.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -fPIC -DPIC -o ./obj/.libs/regfree.o src/regcomp.c: In function ‘p_ere’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:222:3: note: in expansion of macro ‘REQUIRE’ 222 | REQUIRE(HERE() != conc, REG_EMPTY); /* require nonempty */ | ^~~~~~~ src/regcomp.c: In function ‘p_ere_exp’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:269:3: note: in expansion of macro ‘REQUIRE’ 269 | REQUIRE(MORE(), REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:56:24: note: in expansion of macro ‘REQUIRE’ 56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e)) | ^~~~~~~ src/regcomp.c:282:3: note: in expansion of macro ‘MUSTEAT’ 282 | MUSTEAT(')', REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:325:3: note: in expansion of macro ‘REQUIRE’ 325 | REQUIRE(MORE(), REG_EESCAPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:330:3: note: in expansion of macro ‘REQUIRE’ 330 | REQUIRE(!MORE() || !isdigit(PEEK()), REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:346:2: note: in expansion of macro ‘REQUIRE’ 346 | REQUIRE(!wascaret, REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:373:5: note: in expansion of macro ‘REQUIRE’ 373 | REQUIRE(count <= count2, REG_BADBR); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:382:4: note: in expansion of macro ‘REQUIRE’ 382 | REQUIRE(MORE(), REG_EBRACE); | ^~~~~~~ src/regcomp.c: In function ‘p_str’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:405:2: note: in expansion of macro ‘REQUIRE’ 405 | REQUIRE(MORE(), REG_EMPTY); | ^~~~~~~ src/regcomp.c: In function ‘p_bre’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:448:2: note: in expansion of macro ‘REQUIRE’ 448 | REQUIRE(HERE() != start, REG_EMPTY); /* require nonempty */ | ^~~~~~~ src/regcomp.c: In function ‘p_simp_re’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:473:3: note: in expansion of macro ‘REQUIRE’ 473 | REQUIRE(MORE(), REG_EESCAPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:503:3: note: in expansion of macro ‘REQUIRE’ 503 | REQUIRE(EATTWO('\\', ')'), REG_EPAREN); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:533:3: note: in expansion of macro ‘REQUIRE’ 533 | REQUIRE(starordinary, REG_BADRPT); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:551:5: note: in expansion of macro ‘REQUIRE’ 551 | REQUIRE(count <= count2, REG_BADBR); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:560:4: note: in expansion of macro ‘REQUIRE’ 560 | REQUIRE(MORE(), REG_EBRACE); | ^~~~~~~ src/regcomp.c: In function ‘p_count’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:585:2: note: in expansion of macro ‘REQUIRE’ 585 | REQUIRE(ndigits > 0 && count <= DUPMAX, REG_BADBR); | ^~~~~~~ src/regcomp.c: In function ‘p_bracket’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:56:24: note: in expansion of macro ‘REQUIRE’ 56 | #define MUSTEAT(c, e) (REQUIRE(MORE() && GETNEXT() == (c), e)) | ^~~~~~~ src/regcomp.c:625:2: note: in expansion of macro ‘MUSTEAT’ 625 | MUSTEAT(']', REG_EBRACK); | ^~~~~~~ src/regcomp.c: In function ‘p_b_term’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:696:3: note: in expansion of macro ‘REQUIRE’ 696 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:698:3: note: in expansion of macro ‘REQUIRE’ 698 | REQUIRE(c != '-' && c != ']', REG_ECTYPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:700:3: note: in expansion of macro ‘REQUIRE’ 700 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:701:3: note: in expansion of macro ‘REQUIRE’ 701 | REQUIRE(EATTWO(':', ']'), REG_ECTYPE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:705:3: note: in expansion of macro ‘REQUIRE’ 705 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:707:3: note: in expansion of macro ‘REQUIRE’ 707 | REQUIRE(c != '-' && c != ']', REG_ECOLLATE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:709:3: note: in expansion of macro ‘REQUIRE’ 709 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:710:3: note: in expansion of macro ‘REQUIRE’ 710 | REQUIRE(EATTWO('=', ']'), REG_ECOLLATE); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:725:3: note: in expansion of macro ‘REQUIRE’ 725 | REQUIRE(start <= finish, REG_ERANGE); | ^~~~~~~ src/regcomp.c: In function ‘p_b_symbol’: src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:793:2: note: in expansion of macro ‘REQUIRE’ 793 | REQUIRE(MORE(), REG_EBRACK); | ^~~~~~~ src/regcomp.c:54:30: warning: value computed is not used [-Wunused-value] 54 | #define REQUIRE(co, e) ((co) || SETERROR(e)) | ^~ src/regcomp.c:799:2: note: in expansion of macro ‘REQUIRE’ 799 | REQUIRE(EATTWO('.', ']'), REG_ECOLLATE); | ^~~~~~~ libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regfree.c -o ./obj/regfree.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regerror.c -o ./obj/regerror.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regexec.c -o ./obj/regexec.o >/dev/null 2>&1 libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -DPOSIX_MISTAKE -c src/regcomp.c -o ./obj/regcomp.o >/dev/null 2>&1 a - regcomp.o a - regexec.o a - regerror.o a - regfree.o cp -f -t ../lib ./obj/regcomp.o ./obj/regexec.o ./obj/regerror.o ./obj/regfree.o ./obj/regcomp.lo ./obj/regexec.lo ./obj/regerror.lo ./obj/regfree.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/regcomp.o ./obj/.libs/regexec.o ./obj/.libs/regerror.o ./obj/.libs/regfree.o true lib/regex.a lib/regex.a is up to date. ../etc/cifinstall -m 0444 ./lib/regex.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regexec.o x - regerror.o x - regfree.o a - BlockIO.o a - CifString.o a - DataInfo.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/<>/regex' ------------------------------------------------------------ **** Making cif-file **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cif-file' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParentChild.C -fPIC -DPIC -o ./obj/.libs/CifParentChild.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DicFile.C -fPIC -DPIC -o ./obj/.libs/DicFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFile.C -fPIC -DPIC -o ./obj/.libs/CifFile.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ParentChild.C -fPIC -DPIC -o ./obj/.libs/ParentChild.o src/CifFile.C: In member function ‘int CifFile::CheckCellRange(const string&, const string&, const std::vector >&, const std::vector >&)’: src/CifFile.C:2503:12: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] 2503 | catch (exception) | ^~~~~~~~~ libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/DicFile.C -o ./obj/DicFile.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParentChild.C -o ./obj/CifParentChild.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/ParentChild.C -o ./obj/ParentChild.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFile.C -o ./obj/CifFile.o >/dev/null 2>&1 libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifDataInfo.C -fPIC -DPIC -o ./obj/.libs/CifDataInfo.o libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifExcept.C -fPIC -DPIC -o ./obj/.libs/CifExcept.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifExcept.C -o ./obj/CifExcept.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifDataInfo.C -o ./obj/CifDataInfo.o >/dev/null 2>&1 a - CifFile.o a - DicFile.o a - ParentChild.o a - CifParentChild.o a - CifDataInfo.o a - CifExcept.o cp -f -t ../lib ./obj/CifFile.o ./obj/DicFile.o ./obj/ParentChild.o ./obj/CifParentChild.o ./obj/CifDataInfo.o ./obj/CifExcept.o ./obj/CifFile.lo ./obj/DicFile.lo ./obj/ParentChild.lo ./obj/CifParentChild.lo ./obj/CifDataInfo.lo ./obj/CifExcept.lo mkdir -p ../lib/.libs && cp -f -t ../lib/.libs ./obj/.libs/CifFile.o ./obj/.libs/DicFile.o ./obj/.libs/ParentChild.o ./obj/.libs/CifParentChild.o ./obj/.libs/CifDataInfo.o ./obj/.libs/CifExcept.o true lib/cif-file.a lib/cif-file.a is up to date. ../etc/cifinstall -m 0444 ./lib/cif-file.a ../lib x - BlockIO.o x - CifString.o x - DataInfo.o x - Exceptions.o x - GenCont.o x - GenString.o x - ISTable.o x - ITTable.o x - RcsbFile.o x - RcsbPlatform.o x - Serializer.o x - TTable.o x - TableFile.o x - mapped_ptr_vector.o x - mapped_vector.o x - regcomp.o x - regerror.o x - regexec.o x - regfree.o x - CifFile.o x - DicFile.o x - ParentChild.o x - CifParentChild.o x - CifDataInfo.o x - CifExcept.o a - BlockIO.o a - CifDataInfo.o a - CifExcept.o a - CifFile.o a - CifParentChild.o a - CifString.o a - DataInfo.o a - DicFile.o a - Exceptions.o a - GenCont.o a - GenString.o a - ISTable.o a - ITTable.o a - ParentChild.o a - RcsbFile.o a - RcsbPlatform.o a - Serializer.o a - TTable.o a - TableFile.o a - mapped_ptr_vector.o a - mapped_vector.o a - regcomp.o a - regerror.o a - regexec.o a - regfree.o ../etc/cifinstall -m 0444 ./lib/all.a ../lib make[3]: Leaving directory '/<>/cif-file' ------------------------------------------------------------ **** Making cif-parser **** ------------------------------------------------------------ make[3]: Entering directory '/<>/cif-parser' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o sh -c 'cd ./src; bison -d -v -l -p cifparser_ ../src/CifParser.y' libtool --mode=compile g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o sh -c 'cd ./src; bison -d -v -l -p dicparser_ ../src/DICParser.y' mv src/CifParser.tab.c src/CifParser.c mv src/CifParser.tab.h src/CifParser.h libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -c src/CifParser.c -o obj/CifParser.o mv src/DICParser.tab.c src/DICParser.c mv src/DICParser.tab.h src/DICParser.h libtool --mode=compile gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -c src/DICParser.c -o obj/DICParser.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParserBase.C -fPIC -DPIC -o ./obj/.libs/CifParserBase.o libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFileReadDef.C -fPIC -DPIC -o ./obj/.libs/CifFileReadDef.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -c src/DICParser.c -fPIC -DPIC -o obj/.libs/DICParser.o libtool: compile: gcc -Wdate-time -D_FORTIFY_SOURCE=2 -O -Wall -I./include -I../include -c src/CifParser.c -fPIC -DPIC -o obj/.libs/CifParser.o src/DICParser.c:114:10: fatal error: DICParser.tab.h: No such file or directory 114 | #include "DICParser.tab.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. make[3]: *** [Makefile:184: obj/DICParser.o] Error 1 make[3]: *** Waiting for unfinished jobs.... src/CifParser.c:115:10: fatal error: CifParser.tab.h: No such file or directory 115 | #include "CifParser.tab.h" | ^~~~~~~~~~~~~~~~~ compilation terminated. make[3]: *** [Makefile:184: obj/CifParser.o] Error 1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifFileReadDef.C -o ./obj/CifFileReadDef.o >/dev/null 2>&1 libtool: compile: g++ -Wdate-time -D_FORTIFY_SOURCE=2 -O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -c src/CifParserBase.C -o ./obj/CifParserBase.o >/dev/null 2>&1 rm src/DICParser.h src/CifParser.h make[3]: Leaving directory '/<>/cif-parser' libtool: link: g++ -fPIC -DPIC -shared lib/.libs/BlockIO.o lib/.libs/CifDataInfo.o lib/.libs/CifExcept.o lib/.libs/CifFile.o lib/.libs/CifParentChild.o lib/.libs/CifString.o lib/.libs/DataInfo.o lib/.libs/DicFile.o lib/.libs/Exceptions.o lib/.libs/GenCont.o lib/.libs/GenString.o lib/.libs/ISTable.o lib/.libs/ITTable.o lib/.libs/ParentChild.o lib/.libs/RcsbFile.o lib/.libs/RcsbPlatform.o lib/.libs/Serializer.o lib/.libs/TTable.o lib/.libs/TableFile.o lib/.libs/mapped_ptr_vector.o lib/.libs/mapped_vector.o lib/.libs/regcomp.o lib/.libs/regerror.o lib/.libs/regexec.o lib/.libs/regfree.o -lxerces-c -lstdc++ -lm -lc -lgcc_s -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--as-needed -Wl,-soname -Wl,librcsb-core-wrapper.so.0 -o lib/.libs/librcsb-core-wrapper.so.0.0.1 libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so.0" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so.0") libtool: link: (cd "lib/.libs" && rm -f "librcsb-core-wrapper.so" && ln -s "librcsb-core-wrapper.so.0.0.1" "librcsb-core-wrapper.so") libtool: link: ar cr lib/.libs/librcsb-core-wrapper.a lib/BlockIO.o lib/CifDataInfo.o lib/CifExcept.o lib/CifFile.o lib/CifParentChild.o lib/CifString.o lib/DataInfo.o lib/DicFile.o lib/Exceptions.o lib/GenCont.o lib/GenString.o lib/ISTable.o lib/ITTable.o lib/ParentChild.o lib/RcsbFile.o lib/RcsbPlatform.o lib/Serializer.o lib/TTable.o lib/TableFile.o lib/mapped_ptr_vector.o lib/mapped_vector.o lib/regcomp.o lib/regerror.o lib/regexec.o lib/regfree.o libtool: link: ranlib lib/.libs/librcsb-core-wrapper.a libtool: link: ( cd "lib/.libs" && rm -f "librcsb-core-wrapper.la" && ln -s "../librcsb-core-wrapper.la" "librcsb-core-wrapper.la" ) cd wrapper && make OPT=-O make[3]: Entering directory '/<>/wrapper' sed -e 's!@C++FLAGS@!-O -ansi -DINCL_TEMPLATE_SRC -Wall -I./include -I../include -I -I !g; s!@DEFINES@!!g; s!@EXT_COMP_OPT@!-ftemplate-depth-128 -fno-inline -Wall!; s!@EXT_LIBS_DIRS@!-L -L -L!g; s!@EXT_LIBS@!-l -l -l!g;' < "python/setup.py.in" > "python/setup.py" ln -sf ../src python/src make[3]: Leaving directory '/<>/wrapper' make[2]: Leaving directory '/<>' # When using debhelper 11 something is very different in the installation. # The next line tries to hack around this - but this is not the solution - thus reverting debhelper compat level # cp -a common/include/* pdbml-parser/include/* cif-file/include/* tables/include/* include /usr/bin/make doc make[2]: Entering directory '/<>' rm -rf rcsb && cp -r include rcsb grep -lr '^#include "' rcsb | xargs sed -i -e '/^#include "/{ s/#include "\([^"]\+\)"/#include /; }' mkdir -p docs/doxyfiles echo PROJECT_NAME = librcsb-core-wrapper > docs/doxyfiles/Doxyfile echo PROJECT_NUMBER = 1.005 >> docs/doxyfiles/Doxyfile echo OUTPUT_DIRECTORY = docs >> docs/doxyfiles/Doxyfile echo INPUT = rcsb >> docs/doxyfiles/Doxyfile cat etc/Doxyfile-template >> docs/doxyfiles/Doxyfile doxygen docs/doxyfiles/Doxyfile warning: Tag 'USE_WINDOWS_ENCODING' at line 75 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DETAILS_AT_TOP' at line 177 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 411 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 732 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 964 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 970 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1131 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_WIDTH' at line 1246 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MAX_DOT_GRAPH_HEIGHT' at line 1254 of file 'docs/doxyfiles/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! make[2]: Leaving directory '/<>' dh_auto_build --sourcedirectory=wrapper/python --buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_ext building 'CorePyWrap' extension creating build creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python3.8 -c src/TableFilePyWrap.C -o build/temp.linux-x86_64-3.8/src/TableFilePyWrap.o x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../include -I/usr/include/python3.8 -c src/CifFilePyWrap.C -o build/temp.linux-x86_64-3.8/src/CifFilePyWrap.o src/CifFilePyWrap.C:7:10: fatal error: CifFileUtil.h: No such file or directory 7 | #include "CifFileUtil.h" | ^~~~~~~~~~~~~~~ compilation terminated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 E: pybuild pybuild:352: build: plugin distutils failed with: exit code=1: /usr/bin/python3 setup.py build dh_auto_build: error: pybuild --build -i python{version} -p 3.8 --dir wrapper/python returned exit code 13 make[1]: *** [debian/rules:26: override_dh_auto_build-py] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:14: build] Error 2 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-10-04T15:27:37Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 42008 Build-Time: 29 Distribution: sid Fail-Stage: build Host Architecture: amd64 Install-Time: 28 Job: /srv/debomatic/incoming/librcsb-core-wrapper_1.005-8.dsc Machine Architecture: amd64 Package: librcsb-core-wrapper Package-Time: 62 Source-Version: 1.005-8 Space: 42008 Status: attempted Version: 1.005-8 -------------------------------------------------------------------------------- Finished at 2020-10-04T15:27:37Z Build needed 00:01:02, 42008k disk space