sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | libfreecontact-perl 0.08-10 (amd64) Wed, 20 Aug 2025 12:22:31 +0000 | +==============================================================================+ Package: libfreecontact-perl Version: 0.08-10 Source Version: 0.08-10 Distribution: sid Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Wed, 20 Aug 2025 12:22:32 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libfreecontact-perl_0.08-10 sid amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libfreecontact-perl_0.08-10 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Wed, 20 Aug 2025 12:22:32 +0000 | +------------------------------------------------------------------------------+ Hit:1 http://deb.debian.org/debian unstable InRelease Hit:2 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Wed, 20 Aug 2025 12:22:33 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libfreecontact-perl_0.08-10.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Wed, 20 Aug 2025 12:22:34 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libextutils-xspp-perl, libfreecontact-dev, perl, debhelper, build-essential Filtered Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libextutils-xspp-perl, libfreecontact-dev, perl, debhelper, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ InRelease Get:2 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ Release [609 B] Ign:3 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ Release.gpg Get:4 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ Sources [684 B] Get:5 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ Packages [723 B] Fetched 2016 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: architecture-properties autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libextutils-xspp-perl libfile-stripnondeterminism-perl libfreecontact-dev libfreecontact0t64 libgfortran5 liblapack3 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libfreecontact-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: architecture-properties autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libelf1t64 libextutils-xspp-perl libfile-stripnondeterminism-perl libfreecontact-dev libfreecontact0t64 libgfortran5 liblapack3 libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 14.5 MB of archives. After this operation, 53.3 MB of additional disk space will be used. Get:1 copy:/build/libfreecontact-perl-z1jbNS/resolver-2JD1vs/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [900 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libextutils-xspp-perl all 0.1800-3 [146 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-1 [862 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-6 [2447 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libfreecontact0t64 amd64 1.0.21-15 [82.8 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libfreecontact-dev amd64 1.0.21-15 [91.4 kB] Preconfiguring packages ... Fetched 14.5 MB in 0s (107 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23095 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../10-architecture-properties_0.2.6_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.25_all.deb ... Unpacking libdebhelper-perl (13.25) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.25_all.deb ... Unpacking debhelper (13.25) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../29-libblas3_3.12.1-6_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-6) ... Selecting previously unselected package libextutils-xspp-perl. Preparing to unpack .../30-libextutils-xspp-perl_0.1800-3_all.deb ... Unpacking libextutils-xspp-perl (0.1800-3) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../31-libgfortran5_15.2.0-1_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../32-liblapack3_3.12.1-6_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-6) ... Selecting previously unselected package libfreecontact0t64:amd64. Preparing to unpack .../33-libfreecontact0t64_1.0.21-15_amd64.deb ... Unpacking libfreecontact0t64:amd64 (1.0.21-15) ... Selecting previously unselected package libfreecontact-dev:amd64. Preparing to unpack .../34-libfreecontact-dev_1.0.21-15_amd64.deb ... Unpacking libfreecontact-dev:amd64 (1.0.21-15) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../35-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up architecture-properties:amd64 (0.2.6) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (15.2.0-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-6) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libfreecontact0t64:amd64 (1.0.21-15) ... Setting up groff-base (1.23.0-9) ... Setting up libfreecontact-dev:amd64 (1.0.21-15) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Wed, 20 Aug 2025 12:22:38 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Wed, 20 Aug 2025 12:22:38 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-13_13.4.0-1 g++-14_14.3.0-5 gcc-13_13.4.0-1 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 architecture-properties_0.2.6 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-x86-64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 gnupg_2.4.8-2 gnupg-l10n_2.4.8-2 gnupg-utils_2.4.8-2 gpg_2.4.8-2 gpg-agent_2.4.8-2 gpg-wks-client_2.4.8-2 gpgconf_2.4.8-2 gpgsm_2.4.8-2 gpgv_2.4.8-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.29 libapt-pkg7.0_3.1.4 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libblas3_3.12.1-6 libblkid1_2.41.1-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc-l10n_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libextutils-xspp-perl_0.1800-3 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfreecontact-dev_1.0.21-15 libfreecontact0t64_1.0.21-15 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgcrypt20_1.11.2-2 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_15.2.0-1 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgpg-error0_1.55-2 libgprofng0_2.45-4 libhogweed6t64_3.10.1-1 libhwasan0_15.2.0-1 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblapack3_3.12.1-6 liblastlog2-2_2.41.1-1 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1 liblsan0_15.2.0-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libquadmath0_15.2.0-1 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsystemd0_258~rc2-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 libuuid1_2.41.1-1 libxml2-16_2.14.5+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 locales-all_2.41-12 login_1:4.16.0-2+really2.41.1-1 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.2-1 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-6 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Wed, 20 Aug 2025 12:22:38 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-10 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libextutils-xspp-perl, libfreecontact-dev, perl, debhelper Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz 474726f0c25b485c05b3bd768087d673873e50b4 4204 libfreecontact-perl_0.08-10.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 3278bdf6f21aad0979f6268d5ff72bcb97ed95f01803f896eaccd4ee77a156ba 4204 libfreecontact-perl_0.08-10.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 2f657edd8ce4f156afc8c0c9f2e0a3b0 4204 libfreecontact-perl_0.08-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmgrFWoOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFXxw/8CX9KVd8o2wF/LVyys0/iUfYsSW/9KS6JaIDV OLgykJjYPF4xm442162KKZgaYTJdHh4NxiVHwLz/4HW/ZsUvnSSxs+xDi6KZgvmf d6wfs8qCAqA3oWeh9h0WWstogKlNu9hS1kj+09Ud3UQBDq10+mMT7HxnxL/HlVv8 W/A9fvtWQeaNXKvw/n2rITCYGL2NCvHwMWvZQp2BWqt1lR8U8XR+7x2BKFdoUyiR +rp1jIozwvUfhh1L0E2RE3Un9omjGj7paDjTRruufJCnJsgZVQ+riidX9y6x9G1W Uy/tcDWHq+Dq+3Yea+3n2O3ruOb8VOdeXr4bIQEDrW4HZcc+6EioIGHJqCX9K9AJ KHAK1l1EJFywpDms2p3jV1w6PkTzF9V/Z4uDYePizLnSdZV9BXezaaDJuWqyL3Iv vE1/ZLlgvxxmy4rb/19kJZlVaDddy6KUkCPZw7TyUWhz5RgK8KG4FIso1nEhprWL t+MDnzwSfxRatGfjEmFGZkdot5cq3Nv+6hEpI/jVoLQhXkKjZgFfCbaDrZB+rP95 mUSh24UCf4C9V6RidFoChw4RAvJP1r6VQAUZEdsUy/wgwEGneCoAGMBSsMgY10MO uIOl77XYDmQ6sZWZZEdDjCgWS6pd3viRQ3KP2SKzMNes+010whGp6c4fQ0l7mgHD B8vafaE= =+9/8 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libfreecontact-perl_0.08-10.dsc: no acceptable signature found dpkg-source: info: extracting libfreecontact-perl in /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Wed, 20 Aug 2025 12:22:38 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libfreecontact-perl_0.08-10 sid amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libfreecontact-perl_0.08-10 sid amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08 SCHROOT_ALIAS_NAME=sid-amd64-debomatic SCHROOT_CHROOT_NAME=sid-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=sid-amd64-debomatic-41a746c3-8451-47a7-8911-b6b85ae6901f SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libfreecontact-perl using existing ./libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libfreecontact-perl in libfreecontact-perl_0.08-10.debian.tar.xz dpkg-source: info: building libfreecontact-perl in libfreecontact-perl_0.08-10.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" LD="'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" "LD='x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_auto_build make -j2 make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () chmod 644 "FreeContact.bs" "/usr/bin/perl" "/usr/share/perl/5.40/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.40/ExtUtils/typemap' -typemap '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/typemap' -typemap '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.40/CORE" FreeContact.c cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ rm -f blib/arch/auto/FreeContact/FreeContact.so 'x86_64-linux-gnu-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.002453 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.041222 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 2.65022 secs, inverted matrix (incl LUf) in 8.64332 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 8.74661 secs will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.002309 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.041309 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 3.86177 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5 iteration = 6 iteration = 7 7 iterations of glassofast took 1.93753 secs density = 0.00840588, target sp = 0.03, |density-target sp|/target sp = 0.719804 will try rho 0.00160258, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5 iteration = 6will use 1 OMP threads SSE2 veczweight, wchunk = 64 total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.040079 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 2.7057 secs, inverted matrix (incl LUf) in 9.0627 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 26 wallclock secs ( 0.02 usr 0.00 sys + 25.71 cusr 0.10 csys = 25.83 CPU) Result: PASS make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ make -j2 install DESTDIR=/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/FreeContact.so Installing /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/FreeContact.pm Installing /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/autosplit.ix Installing /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-10_amd64.deb'. dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-10_amd64.deb'. dpkg-genbuildinfo -O../libfreecontact-perl_0.08-10_amd64.buildinfo dpkg-genchanges -O../libfreecontact-perl_0.08-10_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-08-20T12:23:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Wed, 20 Aug 2025 12:23:10 +0000 | +------------------------------------------------------------------------------+ libfreecontact-perl_0.08-10_amd64.changes: ------------------------------------------ Format: 1.8 Date: Mon, 19 May 2025 12:17:56 +0200 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: source amd64 Version: 0.08-10 Distribution: sid Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-10) unstable; urgency=medium . * Build on 64 bit architectures only Checksums-Sha1: bc297104238f56f0511d9b6ef7fef670f22ac50a 1304 libfreecontact-perl_0.08-10.dsc 474726f0c25b485c05b3bd768087d673873e50b4 4204 libfreecontact-perl_0.08-10.debian.tar.xz 97fc5c93c1128b118753ab716541a32f2317cf43 167660 libfreecontact-perl-dbgsym_0.08-10_amd64.deb 31f76add78e354dfab9f5daa0f4c5d6ea7c63071 5660 libfreecontact-perl_0.08-10_amd64.buildinfo a9ce7ca53faeb19772868ea744071e8baaa8a560 63392 libfreecontact-perl_0.08-10_amd64.deb Checksums-Sha256: 51434c20dd688cac69ee59262ccec17e66368d6811addfdea391aea1df7db75e 1304 libfreecontact-perl_0.08-10.dsc 3278bdf6f21aad0979f6268d5ff72bcb97ed95f01803f896eaccd4ee77a156ba 4204 libfreecontact-perl_0.08-10.debian.tar.xz 182270fd7d190d2675a5e073254a68f73bc23266074a34d04915c7ebfdb2c6e9 167660 libfreecontact-perl-dbgsym_0.08-10_amd64.deb 8881dbb89d49d9549a77b4ac713fe538fcfaa5258e007719fa6fd5a7b89cdf3b 5660 libfreecontact-perl_0.08-10_amd64.buildinfo bffd2e6c754a4a01f2258535acac48542aa4a750dbca420e3c07c146cc8f586a 63392 libfreecontact-perl_0.08-10_amd64.deb Files: 6e3c1ab00024075d430ebfd99482424a 1304 perl optional libfreecontact-perl_0.08-10.dsc 2f657edd8ce4f156afc8c0c9f2e0a3b0 4204 perl optional libfreecontact-perl_0.08-10.debian.tar.xz 6dcc4ef18ba93a26c070d04ed71105af 167660 debug optional libfreecontact-perl-dbgsym_0.08-10_amd64.deb 4887d978fa4ea1703e074cbcf7f0254c 5660 perl optional libfreecontact-perl_0.08-10_amd64.buildinfo 30bc4ac02392cb8db3c213ea601cc063 63392 perl optional libfreecontact-perl_0.08-10_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Wed, 20 Aug 2025 12:23:10 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: amd64 source Version: 0.08-10 Checksums-Md5: 6e3c1ab00024075d430ebfd99482424a 1304 libfreecontact-perl_0.08-10.dsc 6dcc4ef18ba93a26c070d04ed71105af 167660 libfreecontact-perl-dbgsym_0.08-10_amd64.deb 30bc4ac02392cb8db3c213ea601cc063 63392 libfreecontact-perl_0.08-10_amd64.deb Checksums-Sha1: bc297104238f56f0511d9b6ef7fef670f22ac50a 1304 libfreecontact-perl_0.08-10.dsc 97fc5c93c1128b118753ab716541a32f2317cf43 167660 libfreecontact-perl-dbgsym_0.08-10_amd64.deb a9ce7ca53faeb19772868ea744071e8baaa8a560 63392 libfreecontact-perl_0.08-10_amd64.deb Checksums-Sha256: 51434c20dd688cac69ee59262ccec17e66368d6811addfdea391aea1df7db75e 1304 libfreecontact-perl_0.08-10.dsc 182270fd7d190d2675a5e073254a68f73bc23266074a34d04915c7ebfdb2c6e9 167660 libfreecontact-perl-dbgsym_0.08-10_amd64.deb bffd2e6c754a4a01f2258535acac48542aa4a750dbca420e3c07c146cc8f586a 63392 libfreecontact-perl_0.08-10_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 20 Aug 2025 12:23:10 +0000 Build-Path: /build/libfreecontact-perl-z1jbNS/libfreecontact-perl-0.08 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: architecture-properties (= 0.2.6), autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), binutils (= 2.45-4), binutils-common (= 2.45-4), binutils-x86-64-linux-gnu (= 2.45-4), bsdextrautils (= 2.41.1-1), bsdutils (= 1:2.41.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.3.0-5), cpp-14-x86-64-linux-gnu (= 14.3.0-5), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-x86-64-linux-gnu (= 14.3.0-5), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.3.0-5), gcc-14-base (= 14.3.0-5), gcc-14-x86-64-linux-gnu (= 14.3.0-5), gcc-15-base (= 15.2.0-1), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-1), libatomic1 (= 15.2.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.45-4), libblas3 (= 3.12.1-6), libblkid1 (= 2.41.1-1), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-4), libctf0 (= 2.45-4), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.25), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libextutils-xspp-perl (= 0.1800-3), libfile-stripnondeterminism-perl (= 1.14.1-2), libfreecontact-dev (= 1.0.21-15), libfreecontact0t64 (= 1.0.21-15), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.3.0-5), libgcc-s1 (= 15.2.0-1), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 15.2.0-1), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 15.2.0-1), libgprofng0 (= 2.45-4), libhwasan0 (= 15.2.0-1), libisl23 (= 0.27-1), libitm1 (= 15.2.0-1), libjansson4 (= 2.14-2+b3), liblapack3 (= 3.12.1-6), liblastlog2-2 (= 2.41.1-1), liblsan0 (= 15.2.0-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.1-1), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libquadmath0 (= 15.2.0-1), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-4), libsmartcols1 (= 2.41.1-1), libsqlite3-0 (= 3.46.1-7), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsystemd0 (= 258~rc2-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 15.2.0-1), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 258~rc2-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.1-1), libxml2-16 (= 2.14.5+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.2-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.1-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1747649876" +------------------------------------------------------------------------------+ | Package contents Wed, 20 Aug 2025 12:23:10 +0000 | +------------------------------------------------------------------------------+ libfreecontact-perl-dbgsym_0.08-10_amd64.deb -------------------------------------------- new Debian package, version 2.0. size 167660 bytes: control archive=548 bytes. 418 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libfreecontact-perl-dbgsym Source: libfreecontact-perl Version: 0.08-10 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 180 Depends: libfreecontact-perl (= 0.08-10) Section: debug Priority: optional Description: debug symbols for libfreecontact-perl Build-Ids: 001d7af5ae0f4b177d5668c9f5c3dbbff83604f7 drwxr-xr-x root/root 0 2025-05-19 10:17 ./ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/debug/.build-id/00/ -rw-r--r-- root/root 174048 2025-05-19 10:17 ./usr/lib/debug/.build-id/00/1d7af5ae0f4b177d5668c9f5c3dbbff83604f7.debug drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-05-19 10:17 ./usr/share/doc/libfreecontact-perl-dbgsym -> libfreecontact-perl libfreecontact-perl_0.08-10_amd64.deb ------------------------------------- new Debian package, version 2.0. size 63392 bytes: control archive=1340 bytes. 1376 bytes, 29 lines control 772 bytes, 9 lines md5sums Package: libfreecontact-perl Version: 0.08-10 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 208 Depends: libc6 (>= 2.34), libfreecontact0t64 (>= 1.0.21), libgcc-s1 (>= 3.0), perl (>= 5.40.1-6), perlapi-5.40.1 Section: perl Priority: optional Homepage: https://rostlab.org/owiki/index.php/FreeContact Description: fast protein contact predictor - binding for Perl FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011). . FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible. . A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input. . jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example. . This package contains the Perl binding. drwxr-xr-x root/root 0 2025-05-19 10:17 ./ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/5.40/ -rw-r--r-- root/root 7635 2013-07-17 15:23 ./usr/lib/x86_64-linux-gnu/perl5/5.40/FreeContact.pm drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/ -rw-r--r-- root/root 51224 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/FreeContact.so -rw-r--r-- root/root 90 2025-05-19 10:17 ./usr/lib/x86_64-linux-gnu/perl5/5.40/auto/FreeContact/autosplit.ix drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/doc/libfreecontact-perl/ -rw-r--r-- root/root 686 2013-05-10 16:19 ./usr/share/doc/libfreecontact-perl/README -rw-r--r-- root/root 585 2025-05-19 10:17 ./usr/share/doc/libfreecontact-perl/changelog.Debian.gz -rw-r--r-- root/root 537 2013-09-19 10:10 ./usr/share/doc/libfreecontact-perl/changelog.gz -rw-r--r-- root/root 1124 2025-05-19 10:17 ./usr/share/doc/libfreecontact-perl/copyright drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/doc/libfreecontact-perl/examples/ -rw-r--r-- root/root 127000 2013-04-30 11:59 ./usr/share/doc/libfreecontact-perl/examples/demo_1000.aln drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-19 10:17 ./usr/share/man/man3/ -rw-r--r-- root/root 2881 2025-05-19 10:17 ./usr/share/man/man3/FreeContact.3pm.gz +------------------------------------------------------------------------------+ | Post Build Wed, 20 Aug 2025 12:23:10 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Wed, 20 Aug 2025 12:23:10 +0000 | +------------------------------------------------------------------------------+ Purging /build/libfreecontact-perl-z1jbNS Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Wed, 20 Aug 2025 12:23:11 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 2832 Build-Time: 32 Distribution: sid Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/libfreecontact-perl_0.08-10.dsc Machine Architecture: amd64 Package: libfreecontact-perl Package-Time: 39 Source-Version: 0.08-10 Space: 2832 Status: successful Version: 0.08-10 -------------------------------------------------------------------------------- Finished at 2025-08-20T12:23:10Z Build needed 00:00:39, 2832k disk space