Format: 1.0
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: all source
Version: 1.7.3-14
Checksums-Md5:
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 8916aa093137409211b82eb8f6c01a7c 34908 bioperl-run_1.7.3-14_all.deb
 15eb44e83400bcdef78c54e5435e3bdc 526760 libbio-perl-run-perl_1.7.3-14_all.deb
Checksums-Sha1:
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 331a942eafb5151b57ccc4cdd4171189c2511f6d 526760 libbio-perl-run-perl_1.7.3-14_all.deb
Checksums-Sha256:
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Tue, 10 Mar 2026 05:10:50 +0000
Build-Path: /build/bioperl-run-ZQa6eB/bioperl-run-1.7.3
Build-Tainted-By:
 usr-local-has-programs
Installed-Build-Depends:
 adduser (= 3.154),
 amap-align (= 2.2+git20080214.600fc29+dfsg-2),
 autoconf (= 2.72-6),
 automake (= 1:1.18.1-4),
 autopoint (= 0.23.2-1),
 autotools-dev (= 20240727.1),
 base-files (= 14),
 base-passwd (= 3.6.8),
 bash (= 5.3-2),
 bedtools (= 2.31.1+dfsg-3),
 bedtools-test (= 2.31.1+dfsg-3),
 binutils (= 2.46-3),
 binutils-common (= 2.46-3),
 binutils-x86-64-linux-gnu (= 2.46-3),
 bioperl (= 1.7.8-3),
 bsdextrautils (= 2.41.3-4),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6+b1),
 ca-certificates (= 20260223),
 clustalw (= 2.1+lgpl-7),
 coreutils (= 9.10-1),
 cpp (= 4:15.2.0-5),
 cpp-13 (= 13.4.0-6),
 cpp-13-x86-64-linux-gnu (= 13.4.0-6),
 cpp-15 (= 15.2.0-15),
 cpp-15-x86-64-linux-gnu (= 15.2.0-15),
 cpp-x86-64-linux-gnu (= 4:15.2.0-5),
 dash (= 0.5.12-12),
 debconf (= 1.5.92),
 debhelper (= 13.31),
 debianutils (= 5.23.2),
 dh-autoreconf (= 22),
 dh-strip-nondeterminism (= 1.15.0-1),
 diffutils (= 1:3.12-1),
 dpkg (= 1.23.7),
 dpkg-dev (= 1.23.7),
 dwz (= 0.16-2),
 emboss (= 6.6.0+dfsg-18),
 emboss-data (= 6.6.0+dfsg-18),
 emboss-lib (= 6.6.0+dfsg-18),
 exonerate (= 2.4.0-5+b1),
 fasttree (= 2.1.11-2),
 file (= 1:5.46-5+b1),
 findutils (= 4.10.0-3),
 fontconfig-config (= 2.17.1-5),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:15.2.0-5),
 g++-15 (= 15.2.0-15),
 g++-15-x86-64-linux-gnu (= 15.2.0-15),
 g++-x86-64-linux-gnu (= 4:15.2.0-5),
 gcc (= 4:15.2.0-5),
 gcc-13 (= 13.4.0-6),
 gcc-13-base (= 13.4.0-6),
 gcc-13-x86-64-linux-gnu (= 13.4.0-6),
 gcc-15 (= 15.2.0-15),
 gcc-15-base (= 15.2.0-15),
 gcc-15-x86-64-linux-gnu (= 15.2.0-15),
 gcc-16-base (= 16-20260308-1),
 gcc-x86-64-linux-gnu (= 4:15.2.0-5),
 gettext (= 0.23.2-1),
 gettext-base (= 0.23.2-1),
 grep (= 3.12-1),
 groff-base (= 1.23.0-10),
 gzip (= 1.13-1),
 hmmer (= 3.4+dfsg-3),
 hostname (= 3.25),
 hyphy-common (= 2.5.69+dfsg-2),
 hyphy-pt (= 2.5.69+dfsg-2),
 ibverbs-providers (= 61.0-2),
 infernal (= 1.1.5-3),
 init-system-helpers (= 1.69),
 intltool-debian (= 0.35.0+20060710.6),
 isa-support (= 27+b1),
 kalign (= 1:3.5.1-1),
 lagan (= 2.0-10),
 libabsl20240722 (= 20240722.0-4),
 libacl1 (= 2.3.2-3),
 libalgorithm-diff-perl (= 1.201-1),
 libamd-comgr3 (= 7.0.2+dfsg-3),
 libamdhip64-6 (= 6.4.3-5),
 libaom3 (= 3.13.1-2),
 libarchive-zip-perl (= 1.68-1),
 libarray-compare-perl (= 3.0.8-1),
 libasan8 (= 16-20260308-1),
 libatomic1 (= 16-20260308-1),
 libattr1 (= 1:2.5.2-4),
 libaudit-common (= 1:4.1.2-1),
 libaudit1 (= 1:4.1.2-1+b1),
 libavif16 (= 1.3.0-1+b2),
 libb-hooks-op-check-perl (= 0.22-3+b3),
 libbinutils (= 2.46-3),
 libbio-asn1-entrezgene-perl (= 1.730-3),
 libbio-cluster-perl (= 1.7.3-6),
 libbio-eutilities-perl (= 1.77-3),
 libbio-featureio-perl (= 1.6.905-2),
 libbio-perl-perl (= 1.7.8-3),
 libbio-perl-run-perl (= 1.7.3-14),
 libbio-tools-run-alignment-clustalw-perl (= 1.7.4-4),
 libbio-tools-run-remoteblast-perl (= 1.7.3-3),
 libbio-variation-perl (= 1.7.5-3),
 libblas3 (= 3.12.1-7+b1),
 libblkid1 (= 2.41.3-4),
 libbrotli1 (= 1.2.0-3),
 libbsd0 (= 0.12.2-2+b1),
 libbz2-1.0 (= 1.0.8-6+b1),
 libc-bin (= 2.42-13),
 libc-dev-bin (= 2.42-13),
 libc-gconv-modules-extra (= 2.42-13),
 libc6 (= 2.42-13),
 libc6-dev (= 2.42-13),
 libcap-ng0 (= 0.9.1-1),
 libcapture-tiny-perl (= 0.50-1),
 libcbor0.10 (= 0.10.2-2.1),
 libcc1-0 (= 16-20260308-1),
 libclang-common-21-dev (= 1:21.1.8-5),
 libclass-data-inheritable-perl (= 0.10-1),
 libclass-method-modifiers-perl (= 2.15-1),
 libclass-xsaccessor-perl (= 1.19-4+b5),
 libclone-perl (= 0.48-1),
 libcom-err2 (= 1.47.4-1),
 libconfig-any-perl (= 0.33-1),
 libcrypt1 (= 1:4.5.1-1),
 libctf-nobfd0 (= 2.46-3),
 libctf0 (= 2.46-3),
 libcurl3t64-gnutls (= 8.19.0~rc3-1),
 libdata-stag-perl (= 0.14-4),
 libdav1d7 (= 1.5.3-1+b1),
 libdb5.3t64 (= 5.3.28+dfsg2-11),
 libde265-0 (= 1.0.16-1+b1),
 libdebconfclient0 (= 0.282+b2),
 libdebhelper-perl (= 13.31),
 libdeflate0 (= 1.23-2+b1),
 libdevel-callchecker-perl (= 0.009-3),
 libdevel-stacktrace-perl (= 2.0500-1),
 libdivsufsort3 (= 2.0.1-7),
 libdpkg-perl (= 1.23.7),
 libdrm-amdgpu1 (= 2.4.131-1),
 libdrm-common (= 2.4.131-1),
 libdrm2 (= 2.4.131-1),
 libdynaloader-functions-perl (= 0.004-2),
 libedit2 (= 3.1-20251016-1),
 libelf1t64 (= 0.194-1),
 libencode-locale-perl (= 1.05-3),
 libevent-core-2.1-7t64 (= 2.1.12-stable-10+b2),
 libevent-pthreads-2.1-7t64 (= 2.1.12-stable-10+b2),
 libexception-class-perl (= 1.45-1),
 libexpat1 (= 2.7.4-1),
 libexporter-tiny-perl (= 1.006003-1),
 libfabric1 (= 2.1.0-1.1+b1),
 libffi8 (= 3.5.2-3+b1),
 libfido2-1 (= 1.16.0-2+b1),
 libfile-listing-perl (= 6.16-1),
 libfile-slurp-perl (= 9999.32-2.1),
 libfile-slurper-perl (= 0.014-1),
 libfile-sort-perl (= 1.01-4),
 libfile-stripnondeterminism-perl (= 1.15.0-1),
 libfontconfig1 (= 2.17.1-5),
 libfreetype6 (= 2.14.2+dfsg-1),
 libfuse3-4 (= 3.18.1-1),
 libgav1-2 (= 0.20.0-2),
 libgcc-13-dev (= 13.4.0-6),
 libgcc-15-dev (= 15.2.0-15),
 libgcc-s1 (= 16-20260308-1),
 libgd3 (= 2.3.3-13+b1),
 libgdbm-compat4t64 (= 1.26-1+b1),
 libgdbm6t64 (= 1.26-1+b1),
 libgfortran5 (= 16-20260308-1),
 libglib2.0-0t64 (= 2.87.2-3),
 libgmp10 (= 2:6.3.0+dfsg-5+b1),
 libgnutls30t64 (= 3.8.12-3),
 libgomp1 (= 16-20260308-1),
 libgprofng0 (= 2.46-3),
 libgssapi-krb5-2 (= 1.22.1-2),
 libheif-plugin-dav1d (= 1.21.2-3),
 libheif-plugin-libde265 (= 1.21.2-3),
 libheif1 (= 1.21.2-3),
 libhogweed6t64 (= 3.10.2-1),
 libhpdf-2.3.0 (= 2.3.0+dfsg-1.1),
 libhsa-runtime64-1 (= 6.4.3+dfsg-5),
 libhtml-parser-perl (= 3.83-1+b3),
 libhtml-tagset-perl (= 3.24-1),
 libhtml-tree-perl (= 5.07-3),
 libhts3t64 (= 1.22.1+ds2-1+b1),
 libhtscodecs2 (= 1.6.5-1),
 libhttp-cookies-perl (= 6.11-1),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 7.01-1),
 libhttp-negotiate-perl (= 6.01-2),
 libhwasan0 (= 16-20260308-1),
 libhwloc-plugins (= 2.13.0-2),
 libhwloc15 (= 2.13.0-2),
 libibmad5 (= 61.0-2),
 libibumad3 (= 61.0-2),
 libibverbs1 (= 61.0-2),
 libidn2-0 (= 2.3.8-4+b1),
 libimagequant0 (= 4.4.1-1+b1),
 libimport-into-perl (= 1.002005-2),
 libio-html-perl (= 1.004-3),
 libio-pty-perl (= 1:1.20-1+b3),
 libio-socket-ssl-perl (= 2.098-1),
 libio-string-perl (= 1.08-4),
 libipc-run-perl (= 20250809.0-1),
 libisl23 (= 0.27-1+b1),
 libitm1 (= 16-20260308-1),
 libjansson4 (= 2.14-2+b4),
 libjbig0 (= 2.1-6.1+b3),
 libjpeg62-turbo (= 1:2.1.5-4),
 libk5crypto3 (= 1.22.1-2),
 libkeyutils1 (= 1.6.3-6+b1),
 libkrb5-3 (= 1.22.1-2),
 libkrb5support0 (= 1.22.1-2),
 liblapack3 (= 3.12.1-7+b1),
 libldap2 (= 2.6.10+dfsg-1+b1),
 liblerc4 (= 4.0.0+ds-5+b1),
 libllvm21 (= 1:21.1.8-5),
 liblmdb0 (= 0.9.31-1+b3),
 liblsan0 (= 16-20260308-1),
 liblwp-mediatypes-perl (= 6.04-2),
 liblwp-protocol-https-perl (= 6.15-1),
 liblzma5 (= 5.8.2-2),
 libmagic-mgc (= 1:5.46-5+b1),
 libmagic1t64 (= 1:5.46-5+b1),
 libmariadb3 (= 1:11.8.6-2),
 libmbedcrypto16 (= 3.6.5-0.1),
 libmbedtls21 (= 3.6.5-0.1),
 libmbedx509-7 (= 3.6.5-0.1),
 libmd0 (= 1.1.0-2+b2),
 libmodule-build-perl (= 0.423400-3),
 libmodule-pluggable-perl (= 6.3-1),
 libmodule-runtime-perl (= 0.018-1),
 libmoo-perl (= 2.005005-1),
 libmount1 (= 2.41.3-4),
 libmpc3 (= 1.3.1-2+b1),
 libmpfr6 (= 4.2.2-2+b1),
 libmunge2 (= 0.5.16-1.1),
 libncbi-vdb3 (= 3.2.1+dfsg-2+b1),
 libncurses6 (= 6.6+20251231-1),
 libncursesw6 (= 6.6+20251231-1),
 libnet-http-perl (= 6.24-1),
 libnet-ssleay-perl (= 1.94-3+b1),
 libnettle8t64 (= 3.10.2-1),
 libnghttp2-14 (= 1.68.0-2),
 libnghttp3-9 (= 1.15.0-1),
 libngtcp2-16 (= 1.21.0-1),
 libngtcp2-crypto-gnutls8 (= 1.21.0-1),
 libnl-3-200 (= 3.12.0-2),
 libnl-route-3-200 (= 3.12.0-2),
 libnuma1 (= 2.0.19-1+b1),
 libopenmpi40 (= 5.0.10-1),
 libp11-kit0 (= 0.26.2-2),
 libpam-modules (= 1.7.0-5+b1),
 libpam-modules-bin (= 1.7.0-5+b1),
 libpam-runtime (= 1.7.0-5),
 libpam0g (= 1.7.0-5+b1),
 libparams-classify-perl (= 0.015-2+b5),
 libpciaccess0 (= 0.17-3+b4),
 libpcre2-8-0 (= 10.46-1+b1),
 libperl5.40 (= 5.40.1-7),
 libpipeline1 (= 1.5.8-2),
 libpmix2t64 (= 6.0.0+really5.0.9-3),
 libpng16-16t64 (= 1.6.55-1),
 libpq5 (= 18.3-1+b1),
 libproc2-0 (= 2:4.0.4-9+b1),
 libprrte-bin (= 3.0.13-2),
 libprrte3 (= 3.0.13-2),
 libpsl5t64 (= 0.21.2-1.1+b2),
 libpsm2-2 (= 11.2.185-2.1),
 libpython3-stdlib (= 3.13.9-3),
 libpython3.13-minimal (= 3.13.12-1),
 libpython3.13-stdlib (= 3.13.12-1),
 libquadmath0 (= 16-20260308-1),
 librav1e0.8 (= 0.8.1-7),
 librdmacm1t64 (= 61.0-2),
 libreadline8t64 (= 8.3-4),
 librole-tiny-perl (= 2.002004-1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-3+b1),
 libsasl2-2 (= 2.1.28+dfsg1-10),
 libsasl2-modules-db (= 2.1.28+dfsg1-10),
 libseccomp2 (= 2.6.0-2+b1),
 libselinux1 (= 3.9-4+b1),
 libsemanage-common (= 3.9-1),
 libsemanage2 (= 3.9-1+b1),
 libsepol2 (= 3.9-2),
 libsframe3 (= 2.46-3),
 libsharpyuv0 (= 1.5.0-0.1+b1),
 libsmartcols1 (= 2.41.3-4),
 libsqlite3-0 (= 3.46.1-9+b1),
 libssh2-1t64 (= 1.11.1-1+b1),
 libssl3t64 (= 3.5.5-1),
 libstdc++-15-dev (= 15.2.0-15),
 libstdc++6 (= 16-20260308-1),
 libsub-quote-perl (= 2.006009-1),
 libsub-uplevel-perl (= 0.2800-3),
 libsvtav1enc2 (= 2.3.0+dfsg-1),
 libsystemd-shared (= 260~rc2-1),
 libsystemd0 (= 260~rc2-1),
 libtasn1-6 (= 4.21.0-2),
 libtest-deep-perl (= 1.205-1),
 libtest-differences-perl (= 0.72-1),
 libtest-exception-perl (= 0.43-3),
 libtest-most-perl (= 0.38-1),
 libtest-warn-perl (= 0.37-2),
 libtext-charwidth-perl (= 0.04-11+b5),
 libtext-csv-perl (= 2.06-1),
 libtext-diff-perl (= 1.45-2),
 libtext-wrapi18n-perl (= 0.06-10),
 libtiff6 (= 4.7.1-1),
 libtimedate-perl (= 2.3400-1),
 libtinfo6 (= 6.6+20251231-1),
 libtool (= 2.5.4-9),
 libtree-dagnode-perl (= 1.35-1),
 libtry-tiny-perl (= 0.32-1),
 libtsan2 (= 16-20260308-1),
 libtype-tiny-perl (= 2.010001-1),
 libubsan1 (= 16-20260308-1),
 libucc1 (= 1.7.0~rc1-1),
 libuchardet0 (= 0.0.8-2+b1),
 libucx0 (= 1.20.0+ds-4),
 libudev1 (= 260~rc2-1),
 libunistring5 (= 1.4.2-1),
 liburi-perl (= 5.34-2),
 libuuid1 (= 2.41.3-4),
 libuv1t64 (= 1.51.0-2+b1),
 libwebp7 (= 1.5.0-0.1+b1),
 libwww-perl (= 6.81-1),
 libwww-robotrules-perl (= 6.02-1),
 libx11-6 (= 2:1.8.13-1),
 libx11-data (= 2:1.8.13-1),
 libxau6 (= 1:1.0.11-1+b1),
 libxcb1 (= 1.17.0-2+b2),
 libxdmcp6 (= 1:1.1.5-2),
 libxext6 (= 2:1.3.4-1+b4),
 libxml-dom-perl (= 1.46-2),
 libxml-dom-xpath-perl (= 0.14-4),
 libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-7),
 libxml-namespacesupport-perl (= 1.12-2),
 libxml-parser-perl (= 2.47-1+b3),
 libxml-perl (= 0.08-4),
 libxml-regexp-perl (= 0.04-2),
 libxml-sax-base-perl (= 1.09-3),
 libxml-sax-perl (= 1.02+dfsg-4),
 libxml-simple-perl (= 2.25-2),
 libxml-twig-perl (= 1:3.54-1),
 libxml-writer-perl (= 0.900-2),
 libxml-xpathengine-perl (= 0.14-2),
 libxml2-16 (= 2.15.1+dfsg-2+b1),
 libxnvctrl0 (= 535.171.04-1+b3),
 libxpm4 (= 1:3.5.17-1+b4),
 libyuv0 (= 0.0.1922.20260106-1),
 libz3-4 (= 4.13.3-1+b1),
 libze1 (= 1.28.2-1),
 libzstd1 (= 1.5.7+dfsg-3+b1),
 linux-libc-dev (= 6.19.6-1),
 login.defs (= 1:4.19.3-1),
 m4 (= 1.4.21-1),
 mafft (= 7.525-1),
 make (= 4.4.1-3),
 man-db (= 2.13.1-1),
 mariadb-common (= 1:11.8.6-2),
 mawk (= 1.3.4.20260302-1),
 media-types (= 14.0.0),
 mount (= 2.41.3-4),
 mpi-default-bin (= 1.20),
 muscle (= 1:5.1.0-1),
 mysql-common (= 5.8+1.1.1),
 ncbi-blast+ (= 2.17.0+ds-7),
 ncbi-blast+-legacy (= 2.17.0+ds-7),
 ncbi-data (= 6.1.20170106+dfsg2-7),
 ncbi-vdb-data (= 3.2.1+dfsg-2),
 ncoils (= 2002-10),
 ncurses-base (= 6.6+20251231-1),
 ncurses-bin (= 6.6+20251231-1),
 netbase (= 6.5),
 ocl-icd-libopencl1 (= 2.3.4-1),
 openmpi-bin (= 5.0.10-1),
 openmpi-common (= 5.0.10-1),
 openssh-client (= 1:10.2p1-5),
 openssl (= 3.5.5-1),
 openssl-provider-legacy (= 3.5.5-1),
 pal2nal (= 14.1-3),
 passwd (= 1:4.19.3-1),
 patch (= 2.8-2),
 perl (= 5.40.1-7),
 perl-base (= 5.40.1-7),
 perl-modules-5.40 (= 5.40.1-7),
 perl-openssl-defaults (= 7+b2),
 pftools (= 3.2.12-3),
 phyml (= 3:3.3.20250515-2),
 po-debconf (= 1.0.22),
 primer3 (= 2.6.1-6),
 probcons (= 1.12-15),
 procps (= 2:4.0.4-9+b1),
 python3 (= 3.13.9-3),
 python3-minimal (= 3.13.9-3),
 python3-numpy (= 1:2.3.5+ds-3),
 python3-numpy-dev (= 1:2.3.5+ds-3),
 python3-pybedtools (= 0.10.0-6),
 python3-pysam (= 0.23.3+ds-2+b1),
 python3.13 (= 3.13.12-1),
 python3.13-minimal (= 3.13.12-1),
 raxml (= 8.2.13+dfsg-3),
 readline-common (= 8.3-4),
 rpcsvc-proto (= 1.4.3-1),
 samtools (= 1.22.1-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.26),
 sim4 (= 0.0.20121010-9),
 sse4.2-support (= 27+b1),
 systemd (= 260~rc2-1),
 sysvinit-utils (= 3.15-6),
 tar (= 1.35+dfsg-4),
 tigr-glimmer (= 3.02b-6+b1),
 tzdata (= 2026a-1),
 ucf (= 3.0052),
 util-linux (= 2.41.3-4),
 wise (= 2.4.1-28),
 wise-data (= 2.4.1-28),
 xz-utils (= 5.8.2-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=2"
 LANG="C.UTF-8"
 LANGUAGE="en_GB:en"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 LD_LIBRARY_PATH="/usr/lib/libeatmydata"
 LD_PRELOAD="libeatmydata.so"
 SOURCE_DATE_EPOCH="1773085422"