sbuild (Debian sbuild) 0.91.1 (08 October 2025) on carme.larted.org.uk +==============================================================================+ | psortb 3.0.6+dfsg-5+b1 (amd64) Thu, 13 Nov 2025 21:02:53 +0000 | +==============================================================================+ Package: psortb Version: 3.0.6+dfsg-5+b1 Source Version: 3.0.6+dfsg-5 Distribution: perl-5.42 Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Thu, 13 Nov 2025 21:02:54 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup psortb_3.0.6+dfsg-5 perl-5.42 amd64 ---------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup psortb_3.0.6+dfsg-5 perl-5.42 amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 13 Nov 2025 21:02:55 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:2 http://deb.debian.org/debian unstable InRelease [176 kB] Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:3 http://deb.debian.org/debian sid InRelease [176 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-11-13-2005.03-F-2025-11-13-2005.03.pdiff [22.9 kB] Get:6 file:/srv/reprepro perl-5.42/main amd64 Packages [625 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-11-13-2005.03-F-2025-11-13-2005.03.pdiff [22.9 kB] Get:7 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-11-13-2005.03-F-2025-11-13-2005.03.pdiff [25.5 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-11-13-2005.03-F-2025-11-13-2005.03.pdiff [25.5 kB] Fetched 528 kB in 2s (246 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Thu, 13 Nov 2025 21:02:59 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/psortb_3.0.6+dfsg-5.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 13 Nov 2025 21:02:59 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, perl-xs-dev, pkgconf, pftools, build-essential Filtered Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, perl-xs-dev, pkgconf, pftools, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ InRelease Get:2 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ Release [609 B] Ign:3 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ Release.gpg Get:4 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ Sources [731 B] Get:5 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ Packages [770 B] Fetched 2110 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian isa-support libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libexpat1 libfile-slurp-perl libfile-stripnondeterminism-perl libgfortran5 libhmmer2-dev libio-string-perl liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmodhmm-dev libmodhmm0 libncbi-vdb3 libnghttp2-14 libperl-dev libpipeline1 libpkgconf3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libsquid-dev libsquid1t64 libsub-uplevel-perl libsvm-dev libsvm3 libsvmloc-dev libsvmloc0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libuv1t64 libxml2-16 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-vdb-data netbase pftools pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal sensible-utils sse4.2-support tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libxml-sax-expatxs-perl biosquid libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian isa-support libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libexception-class-perl libexpat1 libfile-slurp-perl libfile-stripnondeterminism-perl libgfortran5 libhmmer2-dev libio-string-perl liblmdb0 libmagic-mgc libmagic1t64 libmbedcrypto16 libmbedtls21 libmbedx509-7 libmodhmm-dev libmodhmm0 libncbi-vdb3 libnghttp2-14 libperl-dev libpipeline1 libpkgconf3 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libsquid-dev libsquid1t64 libsub-uplevel-perl libsvm-dev libsvm3 libsvmloc-dev libsvmloc0 libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtool libuchardet0 libuv1t64 libxml2-16 m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data ncbi-vdb-data netbase pftools pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.13 python3.13-minimal sbuild-build-depends-main-dummy sensible-utils sse4.2-support tzdata 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 69.8 MB/71.0 MB of archives. After this operation, 247 MB of additional disk space will be used. Get:1 copy:/build/psortb-3DR8O5/resolver-TkbtLO/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 libperl-dev amd64 5.42.0-2 [1134 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 isa-support amd64 27 [14.9 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 sse4.2-support amd64 27 [3692 B] Get:16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:35 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-2 [231 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:53 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libfile-slurp-perl all 9999.32-2.1 [26.5 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-8 [862 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libhmmer2-dev amd64 2.3.2+dfsg-12+b2 [97.4 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 liblmdb0 amd64 0.9.31-1+b2 [45.2 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libmbedcrypto16 amd64 3.6.4-2 [360 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libmbedx509-7 amd64 3.6.4-2 [151 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libmbedtls21 amd64 3.6.4-2 [242 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libmodhmm0 amd64 1.0+dfsg-7 [79.8 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libmodhmm-dev amd64 1.0+dfsg-7 [79.8 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libncbi-vdb3 amd64 3.2.1+dfsg-2 [1164 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libsquid1t64 amd64 1.9g+cvs20050121-15.1+b2 [76.8 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libsquid-dev amd64 1.9g+cvs20050121-15.1+b2 [145 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libsvm3 amd64 3.24+ds-6.1 [41.6 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libsvm-dev amd64 3.24+ds-6.1 [62.2 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libsvmloc0 amd64 1.0+dfsg-7 [13.3 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libsvmloc-dev amd64 1.0+dfsg-7 [12.2 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 ncbi-data all 6.1.20170106+dfsg2-6 [3541 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+ amd64 2.17.0+ds-6 [17.0 MB] Get:82 http://deb.debian.org/debian unstable/main amd64 ncbi-blast+-legacy all 2.17.0+ds-6 [13.3 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 pftools amd64 3.2.12-2 [24.8 MB] Get:84 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Preconfiguring packages ... Fetched 69.8 MB in 1s (61.1 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 23311 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 23645 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... 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Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libmbedcrypto16:amd64 (3.6.4-2) ... Setting up libhmmer2-dev:amd64 (2.3.2+dfsg-12+b2) ... Setting up libmodhmm-dev:amd64 (1.0+dfsg-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libsquid1t64:amd64 (1.9g+cvs20050121-15.1+b2) ... Setting up libsvm3:amd64 (3.24+ds-6.1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-7) ... Setting up python3.13 (3.13.9-1) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.72-1) ... Setting up python3 (3.13.7-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libsquid-dev (1.9g+cvs20050121-15.1+b2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libmbedx509-7:amd64 (3.6.4-2) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libsvmloc0:amd64 (1.0+dfsg-7) ... Setting up libsvm-dev:amd64 (3.24+ds-6.1) ... Setting up libmbedtls21:amd64 (3.6.4-2) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libsvmloc-dev:amd64 (1.0+dfsg-7) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libncbi-vdb3:amd64 (3.2.1+dfsg-2) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up ncbi-blast+ (2.17.0+ds-6) ... Setting up bioperl (1.7.8-2) ... 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Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Thu, 13 Nov 2025 21:03:12 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Thu, 13 Nov 2025 21:03:12 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.16.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.16.5-1 (2025-09-05) amd64 (x86_64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-14_14.3.0-10 g++-15_15.2.0-8 gcc-14_14.3.0-10 gcc-15_15.2.0-8 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 linux-libc-dev_6.17.7-2 Package versions: adduser_3.153 apt_3.1.12 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45-8 binutils-common_2.45-8 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.45-8 bioperl_1.7.8-2 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-14_14.3.0-10 cpp-14-x86-64-linux-gnu_14.3.0-10 cpp-15_15.2.0-8 cpp-15-x86-64-linux-gnu_15.2.0-8 cpp-x86-64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.8-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-14_14.3.0-10 g++-14-x86-64-linux-gnu_14.3.0-10 g++-15_15.2.0-8 g++-15-x86-64-linux-gnu_15.2.0-8 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-14_14.3.0-10 gcc-14-base_14.3.0-10 gcc-14-x86-64-linux-gnu_14.3.0-10 gcc-15_15.2.0-8 gcc-15-base_15.2.0-8 gcc-15-x86-64-linux-gnu_15.2.0-8 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 gnupg_2.4.8-4 gnupg-l10n_2.4.8-4 gpg_2.4.8-4 gpg-agent_2.4.8-4 gpgconf_2.4.8-4 gpgsm_2.4.8-4 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 isa-support_27 libacl1_2.3.2-2+b1 libalgorithm-diff-perl_1.201-1 libapt-pkg7.0_3.1.12 libarchive-zip-perl_1.68-1 libasan8_15.2.0-8 libassuan9_3.0.2-2 libatomic1_15.2.0-8 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libbio-perl-perl_1.7.8-2 libblkid1_2.41.2-4 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc-l10n_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcapture-tiny-perl_0.50-1 libcc1-0_15.2.0-8 libclass-data-inheritable-perl_0.10-1 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.281 libdebhelper-perl_13.28 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.194-1 libexception-class-perl_1.45-1 libexpat1_2.7.3-1 libffi8_3.5.2-2 libfile-slurp-perl_9999.32-2.1 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-10 libgcc-15-dev_15.2.0-8 libgcc-s1_15.2.0-8 libgcrypt20_1.11.2-3 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-8 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.10-3 libgomp1_15.2.0-8 libgpg-error0_1.56-2 libgprofng0_2.45-8 libhmmer2-dev_2.3.2+dfsg-12+b2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-8 libidn2-0_2.3.8-4 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_15.2.0-8 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.2-4 libldap2_2.6.10+dfsg-1+b1 liblmdb0_0.9.31-1+b2 liblsan0_15.2.0-8 liblz4-1_1.10.0-6 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmbedcrypto16_3.6.4-2 libmbedtls21_3.6.4-2 libmbedx509-7_3.6.4-2 libmd0_1.1.0-2+b1 libmodhmm-dev_1.0+dfsg-7 libmodhmm0_1.0+dfsg-7 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncbi-vdb3_3.2.1+dfsg-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnpth0t64_1.8-3 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl-dev_5.42.0-2 libperl5.40_5.40.1-6 libperl5.42_5.42.0-2 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libpython3-stdlib_3.13.7-1 libpython3.13-minimal_3.13.9-1 libpython3.13-stdlib_3.13.9-1 libquadmath0_15.2.0-8 libreadline8t64_8.3-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-2 libsemanage-common_3.9-1 libsemanage2_3.9-1 libsepol2_3.9-2 libsframe2_2.45-8 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libsquid-dev_1.9g+cvs20050121-15.1+b2 libsquid1t64_1.9g+cvs20050121-15.1+b2 libssl3t64_3.5.4-1 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 libsub-uplevel-perl_0.2800-3 libsvm-dev_3.24+ds-6.1 libsvm3_3.24+ds-6.1 libsvmloc-dev_1.0+dfsg-7 libsvmloc0_1.0+dfsg-7 libsystemd0_258.1-2 libtasn1-6_4.20.0-2 libtest-deep-perl_1.205-1 libtest-differences-perl_0.72-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libtsan2_15.2.0-8 libubsan1_15.2.0-8 libuchardet0_0.0.8-2 libudev1_258.1-2 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libxml2-16_2.15.1+dfsg-0.3 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.7-2 locales-all_2.41-12 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 ncbi-blast+_2.17.0+ds-6 ncbi-blast+-legacy_2.17.0+ds-6 ncbi-data_6.1.20170106+dfsg2-6 ncbi-vdb-data_3.2.1+dfsg-2 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-2 patch_2.8-2 perl_5.42.0-2 perl-base_5.42.0-2 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-2 pftools_3.2.12-2 pinentry-curses_1.3.2-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 python3_3.13.7-1 python3-minimal_3.13.7-1 python3.13_3.13.9-1 python3.13-minimal_3.13.9-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sse4.2-support_27 sysvinit-utils_3.15-5 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Thu, 13 Nov 2025 21:03:12 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: psortb Binary: psortb Architecture: any Version: 3.0.6+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://www.psort.org/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/psortb Vcs-Git: https://salsa.debian.org/med-team/psortb.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libsvm-dev, bioperl, ncbi-blast+-legacy, libsquid-dev, libhmmer2-dev, libsvmloc-dev, libmodhmm-dev, perl-xs-dev, pkgconf, pftools Package-List: psortb deb science optional arch=any Checksums-Sha1: c47d0ec328df75f2151dd6d5b5840768006519f8 17036876 psortb_3.0.6+dfsg.orig.tar.xz 23a4a1c3c11d2a498287aa38dc1b714ea5ef8d3f 7700 psortb_3.0.6+dfsg-5.debian.tar.xz Checksums-Sha256: ed32aa0240bb03daed228b32614a53c146afba6ca66fd087702315d75e23f751 17036876 psortb_3.0.6+dfsg.orig.tar.xz f521aa299d3eceeaba793784ef13c889c2ff3d94181a97836cc0b7c7898ad7bd 7700 psortb_3.0.6+dfsg-5.debian.tar.xz Files: c4feab06d3031fecac1ab90258550209 17036876 psortb_3.0.6+dfsg.orig.tar.xz b02b06330828080f99283860b6b7cc9b 7700 psortb_3.0.6+dfsg-5.debian.tar.xz Dgit: ef4839fd1295092a55355a6910e5a298cb805ae3 debian archive/debian/3.0.6+dfsg-5 https://git.dgit.debian.org/psortb -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkWJusUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrVQA//Qt+beIEqdmM9y0OuPUyfnBe5RmHt WePN3sHbGJtNYiouJWX2xWYjKE7wj3PutRjN1b/plQx1MfsdOtY2TXvAUab0ccYO tPvcHiUAkZK/AOtImILbFfSFguSiWF9mOR1nkz1pUm/OqRU6aNcEAnarN9D6QBDp Wzoz05KULASCkSrsKvbrnwTX5Wxk3Eg00xkr1L08AQN5GgyuNoYfTcVYvXW7+BDW 0GyvA4jVD0I/Y8kJwpqhA7J57hkoIE5df1gMI5hlfZefpgBmHBRj/ydlNygG26hS LiIV9xGt3uQfEGSI/Va+7QUryQJM7anA57ZcKcmYrK5pedbH/8x6t6LXbE8jFdi+ +rQyLEvMZRwDCCnAOoL8nUDQXb1afWQOSWqL4PFAwWn2T97S2qbZZkqOlqPpAPcD qeg8lrb8R7aEG6agn3GHdLE0VIXIN2lGTgS9WqHorYWQwVyPMI7tyCe0kcxbAQKa Rv3sbhooxPwaZ8r+u8fi89fTjuAb9vSOKRNUWohrqNvyYEvgNXN9u9yvga/0koak hXJNZ0X+tUJXyQQOLdCMekqgt1zwQ51etiZWXsLQ+DbnmOAC1BPjcvBX0OkybjTj 5KyfYp7sfEmc657vzgQe1Nt0a3E8/GsmjVqr67+iKYnG9zdwcYm0n1Z+e3HIrbOu yf68GD/4/JuKdmQ= =7pvK -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./psortb_3.0.6+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting psortb in /build/psortb-3DR8O5/psortb-3.0.6+dfsg dpkg-source: info: unpacking psortb_3.0.6+dfsg.orig.tar.xz dpkg-source: info: unpacking psortb_3.0.6+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying biosquid_includes.patch dpkg-source: info: applying fix_hmmer_interface.patch dpkg-source: info: applying fix_build_Algorithm-SVM.patch dpkg-source: info: applying remove-bundled-party-libsvm.patch dpkg-source: info: applying path_to_conf.patch dpkg-source: info: applying fix_module_path.patch dpkg-source: info: applying add_missing_header.patch Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 3.0.6+dfsg-5+b1 +------------------------------------------------------------------------------+ | Starting Timed Build Commands Thu, 13 Nov 2025 21:03:14 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network psortb_3.0.6+dfsg-5 perl-5.42 amd64 ---------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network psortb_3.0.6+dfsg-5 perl-5.42 amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/psortb-3DR8O5/psortb-3.0.6+dfsg SCHROOT_ALIAS_NAME=perl-5.42-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-4d4bf745-652f-4c52-96f8-96ad675f2b58 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder -B -Zxz dpkg-buildpackage: info: source package psortb dpkg-buildpackage: info: source version 3.0.6+dfsg-5+b1 dpkg-buildpackage: info: source distribution perl-5.42 dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_auto_clean if [ -x psort/bin/psort.debsave ] ; then \ mv psort/bin/psort.debsave psort/bin/psort ; \ fi make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' cp -a psort/bin/psort psort/bin/psort.debsave dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor OPTIMIZE="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" LD="x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" External Module XML::RPC, XML Based RPC client, is not installed on this computer. The XML::RPC in PSortb needs it for making calls to remote PSortb servers, if you don't plan to do this, ignore this warning We think we've found blastall, please enter the path if this isn't correct [/usr/bin/] /usr/bin/ We think we've found pfscan, please enter the path if this isn't correct [/usr/bin/] /usr/bin/ Where do you plan to install the psort configuration files? [/usr/local/psortb] /usr/local/psortb Checking if your kit is complete... Looks good hmmer was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding hmmer either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y squid was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding squid either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Checking if your kit is complete... Looks good Writing MYMETA.yml and MYMETA.json svmloc was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding svmloc either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Checking if your kit is complete... Looks good Writing MYMETA.yml and MYMETA.json modhmm was not found in the dynamic linker path, is there somewhere else we should check? [/usr/local/lib64] /usr/local/lib64 We're still not finding modhmm either in your dynamic linker path (/etc/ld.so.conf) or in /usr/local/lib64. Do you want to continue anyways? [Y/n] [Y] Y Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for Bio::Tools::PSort Writing MYMETA.yml and MYMETA.json Updating psort/bin/psort with path hints Making sclblast databases Building a new DB, current time: 11/13/2025 21:03:18 New DB name: /build/psortb-3DR8O5/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/gramneg/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|6226665 Program failed, try executing the command manually. Building a new DB, current time: 11/13/2025 21:03:18 New DB name: /build/psortb-3DR8O5/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/grampos/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|145559529 Program failed, try executing the command manually. Building a new DB, current time: 11/13/2025 21:03:19 New DB name: /build/psortb-3DR8O5/psortb-3.0.6+dfsg/psort/conf/analysis/sclblast/archaea/sclblast New DB title: sclblast Sequence type: Protein Keep MBits: T Maximum file size: 3000000000B FASTA-Reader: Ignoring invalid residues at position(s): On line 46049: 38 FASTA-Reader: Ignoring invalid residues at position(s): On line 87237: 23 FASTA-Reader: Title ends with at least 50 valid amino acid characters. Was the sequence accidentally put in the title line? FASTA-Reader: Ignoring invalid residues at position(s): On line 87252: 4 FASTA-Reader: Ignoring invalid residues at position(s): On line 87263: 8 BLAST Database creation error: Error: Duplicate seq_ids are found: LCL|15596641 Program failed, try executing the command manually. Ready for make, next steps you must run: $ make $ make test $ make install RECOMMENDED: cp -r psort /usr/local/psortb PSortb will then be available at /usr/local/psortb/bin/psort or in your path depending on your configuration make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' # hack around the issue that configure injects wrong root dir /usr/local/psortb mv psort/bin/psort.debsave psort/bin/psort dh_auto_build make -j2 make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' make[3]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' cp lib/Bio/Tools/PSort/Module/AnalysisI.pm blib/lib/Bio/Tools/PSort/Module/AnalysisI.pm cp lib/Bio/Tools/PSort/Module/Rules.pm blib/lib/Bio/Tools/PSort/Module/Rules.pm cp lib/Bio/Tools/Motif/Pattern.pm blib/lib/Bio/Tools/Motif/Pattern.pm cp lib/Bio/Tools/PSort/Profile/Match.pm blib/lib/Bio/Tools/PSort/Profile/Match.pm cp lib/Bio/Tools/PSort/Module/SVMLocApache.pm blib/lib/Bio/Tools/PSort/Module/SVMLocApache.pm cp lib/Bio/Tools/PSort/Report/Formatter/html.pm blib/lib/Bio/Tools/PSort/Report/Formatter/html.pm cp lib/Bio/Tools/PSort/ModuleI.pm blib/lib/Bio/Tools/PSort/ModuleI.pm cp lib/Bio/Tools/PSort/Pathway.pm blib/lib/Bio/Tools/PSort/Pathway.pm cp lib/Bio/Tools/PSort/Profile.pm blib/lib/Bio/Tools/PSort/Profile.pm cp lib/Bio/Tools/PSort/Module/HMMTOP.pm blib/lib/Bio/Tools/PSort/Module/HMMTOP.pm cp lib/Bio/Tools/PSort/Constants.pm blib/lib/Bio/Tools/PSort/Constants.pm cp lib/Bio/Tools/PSort/Module/Signal.pm blib/lib/Bio/Tools/PSort/Module/Signal.pm cp lib/Bio/Tools/PSort/Module/ModHMM.pm blib/lib/Bio/Tools/PSort/Module/ModHMM.pm cp lib/Bio/Tools/PSort/Module/Profile.pm blib/lib/Bio/Tools/PSort/Module/Profile.pm cp lib/Bio/Tools/PSort/Report/Formatter/long.pm blib/lib/Bio/Tools/PSort/Report/Formatter/long.pm cp lib/Bio/Tools/PSort/Report.pm blib/lib/Bio/Tools/PSort/Report.pm cp lib/Bio/Tools/PSort/Module/SCLBlast.pm blib/lib/Bio/Tools/PSort/Module/SCLBlast.pm cp lib/Bio/Tools/PSort/Module/Motif.pm blib/lib/Bio/Tools/PSort/Module/Motif.pm cp lib/Bio/Tools/PSort.pm blib/lib/Bio/Tools/PSort.pm cp lib/Bio/Tools/Motif/Match.pm blib/lib/Bio/Tools/Motif/Match.pm cp lib/Bio/Tools/PSort/Module/OMPMotif.pm blib/lib/Bio/Tools/PSort/Module/OMPMotif.pm cp lib/Bio/Tools/PSort/Module/InputI.pm blib/lib/Bio/Tools/PSort/Module/InputI.pm cp lib/Bio/Tools/PSort/Module/Bayesian.pm blib/lib/Bio/Tools/PSort/Module/Bayesian.pm cp lib/Bio/Tools/Motif.pm blib/lib/Bio/Tools/Motif.pm cp lib/Bio/Tools/PSort/Report/Formatter.pm blib/lib/Bio/Tools/PSort/Report/Formatter.pm cp lib/Bio/Tools/PSort/Install.pm blib/lib/Bio/Tools/PSort/Install.pm cp lib/Bio/Tools/PSort/Module/OutputI.pm blib/lib/Bio/Tools/PSort/Module/OutputI.pm cp lib/Bio/Tools/PSort/Module/Null.pm blib/lib/Bio/Tools/PSort/Module/Null.pm cp lib/Bio/Tools/PSort/Module/SVMLoc.pm blib/lib/Bio/Tools/PSort/Module/SVMLoc.pm cp lib/Bio/Tools/PSort/Report/Formatter/normal.pm blib/lib/Bio/Tools/PSort/Report/Formatter/normal.pm cp lib/Bio/Tools/Run/SCLBlastLocal.pm blib/lib/Bio/Tools/Run/SCLBlastLocal.pm cp lib/Bio/Tools/PSort/XMLRPC/Client.pm blib/lib/Bio/Tools/PSort/XMLRPC/Client.pm cp lib/Bio/Tools/SVMLoc.pm blib/lib/Bio/Tools/SVMLoc.pm cp lib/Bio/Tools/Signal/Report.pm blib/lib/Bio/Tools/Signal/Report.pm cp lib/Bio/Tools/Run/SCLBlast.pm blib/lib/Bio/Tools/Run/SCLBlast.pm cp lib/Bio/Tools/Run/SCLBlast/Report.pm blib/lib/Bio/Tools/Run/SCLBlast/Report.pm cp lib/Bio/Tools/PSort/Report/Formatter/terse.pm blib/lib/Bio/Tools/PSort/Report/Formatter/terse.pm cp lib/Bio/Tools/PSort/Report/Result.pm blib/lib/Bio/Tools/PSort/Report/Result.pm cp lib/Bio/Tools/Run/SCLBlast/Hit.pm blib/lib/Bio/Tools/Run/SCLBlast/Hit.pm cp lib/Bio/Tools/Run/HMMTOP.pm blib/lib/Bio/Tools/Run/HMMTOP.pm cp lib/Bio/Tools/Run/HMMTOP/Helix.pm blib/lib/Bio/Tools/Run/HMMTOP/Helix.pm cp lib/Bio/Tools/Run/HMMTOP/Report.pm blib/lib/Bio/Tools/Run/HMMTOP/Report.pm cp lib/Bio/Tools/Signal.pm blib/lib/Bio/Tools/Signal.pm Running Mkbootstrap for HMM () cp lib/Algorithm/HMM/Hit.pm ../blib/lib/Algorithm/HMM/Hit.pm cp lib/Algorithm/HMM/Report.pm ../blib/lib/Algorithm/HMM/Report.pm cp lib/Algorithm/HMM/Hit/Global.pm ../blib/lib/Algorithm/HMM/Hit/Global.pm cp lib/Algorithm/HMM.pm ../blib/lib/Algorithm/HMM.pm AutoSplitting ../blib/lib/Algorithm/HMM.pm (../blib/lib/auto/Algorithm/HMM) cp lib/Algorithm/HMM/Hit/Domain.pm ../blib/lib/Algorithm/HMM/Hit/Domain.pm "/usr/bin/perl" "/usr/share/perl/5.42.0/ExtUtils/xsubpp" -C++ -typemap '/usr/share/perl/5.42/ExtUtils/typemap' -typemap '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm/typemap' HMM.xs > HMM.xsc chmod 644 "HMM.bs" g++ -c -Isrc/include `pkg-config --cflags libsquid` `pkg-config --cflags libhmmer2` -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" hmm-binding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Please specify prototyping behavior for HMM.xs (see perlxs manual) mv HMM.xsc HMM.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 g++ -c -Isrc/include `pkg-config --cflags libsquid` `pkg-config --cflags libhmmer2` -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.02\" -DXS_VERSION=\"0.02\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" HMM.c cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ hmm-binding.cpp: In member function ‘HMMReport* HMM::search(char*)’: hmm-binding.cpp:136:71: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 136 | PostprocessSignificantHit(ghit, dhit, trace, model, dseq, seqlen, "SEQ", | ^~~~~ rm -f ../blib/arch/auto/Algorithm/HMM/HMM.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong HMM.o hmm-binding.o -o ../blib/arch/auto/Algorithm/HMM/HMM.so \ -lm -lpthread -lstdc++ -lhmmer -lsquid \ chmod 755 ../blib/arch/auto/Algorithm/HMM/HMM.so Manifying 5 pod documents make[3]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' make[3]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' Running Mkbootstrap for SVMLoc () cp lib/Bio/Tools/PSort/SVMLoc.pm ../blib/lib/Bio/Tools/PSort/SVMLoc.pm AutoSplitting ../blib/lib/Bio/Tools/PSort/SVMLoc.pm (../blib/lib/auto/Bio/Tools/PSort/SVMLoc) cp lib/Bio/Tools/PSort/SVMLoc/DataSet.pm ../blib/lib/Bio/Tools/PSort/SVMLoc/DataSet.pm "/usr/bin/perl" "/usr/share/perl/5.42.0/ExtUtils/xsubpp" -C++ -typemap '/usr/share/perl/5.42/ExtUtils/typemap' -typemap '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc/typemap' SVMLoc.xs > SVMLoc.xsc chmod 644 "SVMLoc.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 Please specify prototyping behavior for SVMLoc.xs (see perlxs manual) mv SVMLoc.xsc SVMLoc.c g++ -c -Wall -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" SVMLoc.c cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ rm -f ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong SVMLoc.o -o ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so \ -lsvmloc -lm -lsvm -lstdc++ \ chmod 755 ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so Manifying 2 pod documents make[3]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' make[3]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' cp lib/Bio/Tools/PSort/ModHMM.pm ../blib/lib/Bio/Tools/PSort/ModHMM.pm AutoSplitting ../blib/lib/Bio/Tools/PSort/ModHMM.pm (../blib/lib/auto/Bio/Tools/PSort/ModHMM) Running Mkbootstrap for ModHMM () chmod 644 "ModHMM.bs" "/usr/bin/perl" "/usr/share/perl/5.42.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.42/ExtUtils/typemap' -typemap '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm/typemap' modhmm.xs > modhmm.xsc cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" binding.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 mv modhmm.xsc modhmm.c cc -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.01\" -DXS_VERSION=\"0.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" modhmm.c rm -f ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/psortb-3DR8O5/psortb-3.0.6+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong modhmm.o binding.o -o ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so \ -lm -lstdc++ -lmodhmm \ chmod 755 ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.so Manifying 1 pod document make[3]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' Manifying 18 pod documents make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_auto_test -a make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 Manifying 5 pod documents make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 Manifying 2 pod documents make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/hmm.t .. 1..5 ok 1 - use Algorithm::HMM; ok 2 Creating new Algorithm::HMM ok 3 - Ensuring we could load a model Saving model... ok 4 - Testing saving a model Loading saved model... ok 5 - Testing reloading a model ok All tests successful. Files=1, Tests=5, 0 wallclock secs ( 0.00 usr 0.01 sys + 0.04 cusr 0.00 csys = 0.05 CPU) Result: PASS make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/svmloc.t .. 1..15 ok 1 - use Bio::Tools::PSort::SVMLoc; ok 2 - use Bio::Tools::PSort::SVMLoc::DataSet; ok 3 - Loaded SVMLoc Creating new Bio::Tools::PSort::SVMLoc ok 4 - Creating SVMLoc object Checking predictions on loaded model ok 5 - Classify seq 1 ok 6 - Classify seq 2 ok 7 - Classify seq 3 Creating second Bio::Tools::PSort::SVMLoc ok 8 - Creating SVMLoc object 2 Creating new Bio::Tools::PSort::SVMLoc::DataSet objects ok 9 - Dataset 1 created ok 10 - Dataset 2 created ok 11 - Dataset 3 created Adding attributes to Bio::Tools::PSort::SVMLoc::DataSet objects ok 12 Checking predictions on second loaded model ok 13 - Classify seq 1 on model 2 ok 14 - Classify seq 2 on model 2 ok 15 - Classify seq 3 on model 2 Everything looks ok! ok All tests successful. Files=1, Tests=15, 0 wallclock secs ( 0.02 usr 0.00 sys + 0.13 cusr 0.01 csys = 0.16 CPU) Result: PASS make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/modhmm.t .. 1..4 ok 1 - use Bio::Tools::PSort::ModHMM; ok 2 - Loading ModHMM Running sequence through Bio::Tools::PSort::ModHMM ok 3 - Running sequence through ModHMM Retreiving TM helix sites ok 4 - Retreiving TM helix sites ok All tests successful. Files=1, Tests=4, 0 wallclock secs ( 0.01 usr 0.00 sys + 0.09 cusr 0.01 csys = 0.11 CPU) Result: PASS make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/psort.t .. 1..2 ok 1 - PSort module loaded Creating new Bio::Tools::PSort ok 2 - PSort object made ok All tests successful. Files=1, Tests=2, 1 wallclock secs ( 0.01 usr 0.00 sys + 0.05 cusr 0.01 csys = 0.07 CPU) Result: PASS make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/psortb/ -a make -j2 install DESTDIR=/build/psortb-3DR8O5/psortb-3.0.6\+dfsg/debian/psortb AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- HMM.bs ../blib/arch/auto/Algorithm/HMM/HMM.bs 644 Manifying 5 pod documents make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/algorithm-hmm' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- SVMLoc.bs ../blib/arch/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.bs 644 Manifying 2 pod documents make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-svmloc' make[2]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- ModHMM.bs ../blib/arch/auto/Bio/Tools/PSort/ModHMM/ModHMM.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg/bio-tools-psort-modhmm' Manifying 18 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Bio/Tools/PSort/ModHMM/ModHMM.so Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Bio/Tools/PSort/SVMLoc/SVMLoc.so Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Algorithm/HMM/HMM.so Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Bio/Tools/PSort/ModHMM/autosplit.ix Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Bio/Tools/PSort/SVMLoc/autosplit.ix Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/Algorithm/HMM/autosplit.ix Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/SVMLoc.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Signal.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Motif.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/SCLBlast.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/HMMTOP.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/SCLBlastLocal.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/SCLBlast/Report.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/SCLBlast/Hit.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/HMMTOP/Report.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Run/HMMTOP/Helix.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/ModHMM.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Install.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Pathway.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Constants.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/SVMLoc.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Profile.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/ModuleI.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Profile/Match.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/SVMLoc/DataSet.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Formatter.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Result.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Formatter/normal.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Formatter/long.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Formatter/terse.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Report/Formatter/html.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/XMLRPC/Client.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Null.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/AnalysisI.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/ModHMM.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/SCLBlast.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/OutputI.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Bayesian.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/SVMLoc.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/HMMTOP.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Rules.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Signal.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Profile.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/OMPMotif.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/SVMLocApache.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/Motif.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/PSort/Module/InputI.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Motif/Match.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Motif/Pattern.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Bio/Tools/Signal/Report.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Algorithm/HMM.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Algorithm/HMM/Report.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Algorithm/HMM/Hit.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Algorithm/HMM/Hit/Domain.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/lib/x86_64-linux-gnu/perl5/5.42/Algorithm/HMM/Hit/Global.pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::ModHMM.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::AnalysisI.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::Run::HMMTOP.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::Signal.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::SVMLoc.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Pathway.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::Motif.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::SVMLoc::DataSet.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit::Domain.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::OutputI.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::InputI.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Algorithm::HMM::Report.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Motif.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::SVMLoc.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Null.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::Motif::Pattern.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::Profile.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Module::OMPMotif.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit::Global.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Profile::Match.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::Profile.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::PSort::ModuleI.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Algorithm::HMM.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Bio::Tools::Motif::Match.3pm Installing /build/psortb-3DR8O5/psortb-3.0.6+dfsg/debian/psortb/usr/share/man/man3/Algorithm::HMM::Hit.3pm make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_fixperms chmod +x debian/psortb/usr/lib/psort/conf/analysis/signal/archaea/check-sig make[1]: Leaving directory '/build/psortb-3DR8O5/psortb-3.0.6+dfsg' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'psortb' in '../psortb_3.0.6+dfsg-5+b1_amd64.deb'. dpkg-deb: building package 'psortb-dbgsym' in '../psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb'. dpkg-genbuildinfo --build=any -O../psortb_3.0.6+dfsg-5+b1_amd64.buildinfo dpkg-genchanges --build=any -mDebian Perl autobuilder -O../psortb_3.0.6+dfsg-5+b1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-11-13T21:04:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 13 Nov 2025 21:04:20 +0000 | +------------------------------------------------------------------------------+ psortb_3.0.6+dfsg-5+b1_amd64.changes: ------------------------------------- Format: 1.8 Date: Thu, 13 Nov 2025 21:02:53 +0000 Source: psortb (3.0.6+dfsg-5) Binary: psortb psortb-dbgsym Binary-Only: yes Architecture: amd64 Version: 3.0.6+dfsg-5+b1 Distribution: perl-5.42 Urgency: low Maintainer: Debian Perl autobuilder Changed-By: Debian Perl autobuilder Description: psortb - bacterial localization prediction tool Changes: psortb (3.0.6+dfsg-5+b1) perl-5.42; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.42 Checksums-Sha1: a1f586bfb02edb1b547744b686241e964fcf0e23 158332 psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb cdb340537fa7896f8304f149a72306dbc66f967f 7130 psortb_3.0.6+dfsg-5+b1_amd64.buildinfo aaf48431dc0cad6abdac2d7d431378f926676e9d 16374616 psortb_3.0.6+dfsg-5+b1_amd64.deb Checksums-Sha256: 249a0127aa7ca32b6479d23cffa68361aca8f02514e982fc928524b34e88285d 158332 psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb 42f5256a349d98127369012b51c1956c59f7780798c9e2cd6737d1ffb9aa53cf 7130 psortb_3.0.6+dfsg-5+b1_amd64.buildinfo d0b5b20dad09d74e03a6cc0cfea9391ad5066e4f20b87db50a01a84fd54e9646 16374616 psortb_3.0.6+dfsg-5+b1_amd64.deb Files: a5bb92aa8000b39411ede058ad1d38b3 158332 debug optional psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb 4ef347939cd922740f563dae11b9aaca 7130 science optional psortb_3.0.6+dfsg-5+b1_amd64.buildinfo 281f22c4eeac93bedd94a5a4ff7a6f18 16374616 science optional psortb_3.0.6+dfsg-5+b1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Thu, 13 Nov 2025 21:04:20 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: psortb (3.0.6+dfsg-5) Binary: psortb psortb-dbgsym Architecture: amd64 Version: 3.0.6+dfsg-5+b1 Binary-Only-Changes: psortb (3.0.6+dfsg-5+b1) perl-5.42; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.42 . -- Debian Perl autobuilder Thu, 13 Nov 2025 21:02:53 +0000 Checksums-Md5: a5bb92aa8000b39411ede058ad1d38b3 158332 psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb 281f22c4eeac93bedd94a5a4ff7a6f18 16374616 psortb_3.0.6+dfsg-5+b1_amd64.deb Checksums-Sha1: a1f586bfb02edb1b547744b686241e964fcf0e23 158332 psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb aaf48431dc0cad6abdac2d7d431378f926676e9d 16374616 psortb_3.0.6+dfsg-5+b1_amd64.deb Checksums-Sha256: 249a0127aa7ca32b6479d23cffa68361aca8f02514e982fc928524b34e88285d 158332 psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb d0b5b20dad09d74e03a6cc0cfea9391ad5066e4f20b87db50a01a84fd54e9646 16374616 psortb_3.0.6+dfsg-5+b1_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 13 Nov 2025 21:04:19 +0000 Build-Path: /build/psortb-3DR8O5/psortb-3.0.6+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45-8), binutils-common (= 2.45-8), binutils-x86-64-linux-gnu (= 2.45-8), bioperl (= 1.7.8-2), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-14 (= 14.3.0-10), cpp-14-x86-64-linux-gnu (= 14.3.0-10), cpp-15 (= 15.2.0-8), cpp-15-x86-64-linux-gnu (= 15.2.0-8), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-8), g++-15-x86-64-linux-gnu (= 15.2.0-8), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-14 (= 14.3.0-10), gcc-14-base (= 14.3.0-10), gcc-14-x86-64-linux-gnu (= 14.3.0-10), gcc-15 (= 15.2.0-8), gcc-15-base (= 15.2.0-8), gcc-15-x86-64-linux-gnu (= 15.2.0-8), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), isa-support (= 27), libacl1 (= 2.3.2-2+b1), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-8), libatomic1 (= 15.2.0-8), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-8), libbio-perl-perl (= 1.7.8-2), libblkid1 (= 2.41.2-4), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcapture-tiny-perl (= 0.50-1), libcc1-0 (= 15.2.0-8), libclass-data-inheritable-perl (= 0.10-1), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.281), libdebhelper-perl (= 13.28), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.194-1), libexception-class-perl (= 1.45-1), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-slurp-perl (= 9999.32-2.1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-10), libgcc-15-dev (= 15.2.0-8), libgcc-s1 (= 15.2.0-8), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgfortran5 (= 15.2.0-8), libgmp10 (= 2:6.3.0+dfsg-5), libgomp1 (= 15.2.0-8), libgprofng0 (= 2.45-8), libhmmer2-dev (= 2.3.2+dfsg-12+b2), libhwasan0 (= 15.2.0-8), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-8), libjansson4 (= 2.14-2+b3), liblmdb0 (= 0.9.31-1+b2), liblsan0 (= 15.2.0-8), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmbedcrypto16 (= 3.6.4-2), libmbedtls21 (= 3.6.4-2), libmbedx509-7 (= 3.6.4-2), libmd0 (= 1.1.0-2+b1), libmodhmm-dev (= 1.0+dfsg-7), libmodhmm0 (= 1.0+dfsg-7), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncbi-vdb3 (= 3.2.1+dfsg-2), libncursesw6 (= 6.5+20250216-2), libnghttp2-14 (= 1.64.0-1.1+b1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl-dev (= 5.42.0-2), libperl5.42 (= 5.42.0-2), libpipeline1 (= 1.5.8-1), libpkgconf3 (= 1.8.1-4), libpython3-stdlib (= 3.13.7-1), libpython3.13-minimal (= 3.13.9-1), libpython3.13-stdlib (= 3.13.9-1), libquadmath0 (= 15.2.0-8), libreadline8t64 (= 8.3-3), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsmartcols1 (= 2.41.2-4), libsqlite3-0 (= 3.46.1-8), libsquid-dev (= 1.9g+cvs20050121-15.1+b2), libsquid1t64 (= 1.9g+cvs20050121-15.1+b2), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-8), libstdc++6 (= 15.2.0-8), libsub-uplevel-perl (= 0.2800-3), libsvm-dev (= 3.24+ds-6.1), libsvm3 (= 3.24+ds-6.1), libsvmloc-dev (= 1.0+dfsg-7), libsvmloc0 (= 1.0+dfsg-7), libsystemd0 (= 258.1-2), libtest-deep-perl (= 1.205-1), libtest-differences-perl (= 0.72-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-8), libubsan1 (= 15.2.0-8), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libuv1t64 (= 1.51.0-2), libxml2-16 (= 2.15.1+dfsg-0.3), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.7-2), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 14.0.0), ncbi-blast+ (= 2.17.0+ds-6), ncbi-blast+-legacy (= 2.17.0+ds-6), ncbi-data (= 6.1.20170106+dfsg2-6), ncbi-vdb-data (= 3.2.1+dfsg-2), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.42.0-2), perl-base (= 5.42.0-2), perl-modules-5.42 (= 5.42.0-2), pftools (= 3.2.12-2), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), python3 (= 3.13.7-1), python3-minimal (= 3.13.7-1), python3.13 (= 3.13.9-1), python3.13-minimal (= 3.13.9-1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sse4.2-support (= 27), sysvinit-utils (= 3.15-5), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1763067773" +------------------------------------------------------------------------------+ | Package contents Thu, 13 Nov 2025 21:04:20 +0000 | +------------------------------------------------------------------------------+ psortb-dbgsym_3.0.6+dfsg-5+b1_amd64.deb --------------------------------------- new Debian package, version 2.0. size 158332 bytes: control archive=704 bytes. 479 bytes, 12 lines control 401 bytes, 4 lines md5sums Package: psortb-dbgsym Source: psortb (3.0.6+dfsg-5) Version: 3.0.6+dfsg-5+b1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 196 Depends: psortb (= 3.0.6+dfsg-5+b1) Section: debug Priority: optional Description: debug symbols for psortb Build-Ids: 33c889c79ec82eea94919fe2b3c57f11a656308c 996b8d764b1a8fe83eac3587401978c99e1868f5 e85553d53969075a897acc94b2bc8809c95a4aa8 drwxr-xr-x root/root 0 2025-11-13 21:02 ./ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.build-id/33/ -rw-r--r-- root/root 40152 2025-11-13 21:02 ./usr/lib/debug/.build-id/33/c889c79ec82eea94919fe2b3c57f11a656308c.debug drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.build-id/99/ -rw-r--r-- root/root 90944 2025-11-13 21:02 ./usr/lib/debug/.build-id/99/6b8d764b1a8fe83eac3587401978c99e1868f5.debug drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.build-id/e8/ -rw-r--r-- root/root 25696 2025-11-13 21:02 ./usr/lib/debug/.build-id/e8/5553d53969075a897acc94b2bc8809c95a4aa8.debug drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 27536 2025-11-13 21:02 ./usr/lib/debug/.dwz/x86_64-linux-gnu/psortb.debug drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/share/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-11-13 21:02 ./usr/share/doc/psortb-dbgsym -> psortb psortb_3.0.6+dfsg-5+b1_amd64.deb -------------------------------- new Debian package, version 2.0. size 16374616 bytes: control archive=4896 bytes. 951 bytes, 16 lines control 15647 bytes, 166 lines md5sums Package: psortb Source: psortb (3.0.6+dfsg-5) Version: 3.0.6+dfsg-5+b1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 116756 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libmodhmm0 (>= 1.0+dfsg), libsquid1t64 (>= 1.9g+cvs20050121), libstdc++6 (>= 13.1), libsvmloc0 (>= 1.0+dfsg), perl (>= 5.42.0-2), perlapi-5.42.0, libbio-perl-perl, libbio-perl-run-perl, libalgorithm-svm-perl, pftools, librpc-xml-perl Section: science Priority: optional Homepage: https://www.psort.org/ Description: bacterial localization prediction tool PSORTb enables prediction of bacterial protein subcellular localization (SCL) and provides a quick and inexpensive means for gaining insight into protein function, verifying experimental results, annotating newly sequenced bacterial genomes, detecting potential cell surface/secreted drug targets, as well as identifying biomarkers for microbes. drwxr-xr-x root/root 0 2025-11-13 21:02 ./ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/bin/ -rwxr-xr-x root/root 17095 2025-11-13 21:02 ./usr/bin/psort drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/ drwxr-xr-x root/root 0 2025-11-13 21:02 ./usr/lib/psort/ drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/ drwxr-xr-x root/root 0 2017-10-24 22:29 ./usr/lib/psort/conf/analysis/ drwxr-xr-x root/root 0 2017-10-24 22:29 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+------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 258984 Build-Time: 66 Distribution: perl-5.42 Host Architecture: amd64 Install-Time: 13 Job: /srv/debomatic/incoming/psortb_3.0.6+dfsg-5.dsc Machine Architecture: amd64 Package: psortb Package-Time: 87 Source-Version: 3.0.6+dfsg-5 Space: 258984 Status: successful Version: 3.0.6+dfsg-5+b1 -------------------------------------------------------------------------------- Finished at 2025-11-13T21:04:20Z Build needed 00:01:27, 258984k disk space