sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | altree 1.3.2-2+b5 (amd64) Sat, 16 Aug 2025 18:06:49 +0000 | +==============================================================================+ Package: altree Version: 1.3.2-2+b5 Source Version: 1.3.2-2 Distribution: perl-5.42 Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: any I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 16 Aug 2025 18:06:50 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup altree_1.3.2-2 perl-5.42 amd64 ----------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup altree_1.3.2-2 perl-5.42 amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 16 Aug 2025 18:06:50 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 Packages [385 kB] Hit:3 http://deb.debian.org/debian unstable InRelease Hit:4 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: init-system-helpers libidn2-0 libldap2 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 149 kB/342 kB of archives. After this operation, 6144 B of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [194 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Fetched 149 kB in 0s (8231 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.8-3_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-3) over (2.3.8-2) ... Preparing to unpack .../libldap2_2.6.10+dfsg-1+b1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1+b1) over (2.6.10+dfsg-1) ... Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files Sat, 16 Aug 2025 18:06:56 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/altree_1.3.2-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 16 Aug 2025 18:06:56 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/altree-6mMMjt/resolver-5Y420A/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ InRelease Get:2 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ Release [609 B] Ign:3 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ Release.gpg Get:4 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ Sources [828 B] Get:5 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ Packages [854 B] Fetched 2291 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libcairo2 libcom-err2 libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu76 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64 libmath-tamuanova-perl libmpfi0 libnetpbm11t64 libopenjp2-7 libpaper-utils libpaper2 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libproc2-0 libptexenc1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libsharpyuv0 libsm6 libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style procps python3 python3-minimal python3.13 python3.13-minimal sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf x11-common xdg-utils xfonts-encodings xfonts-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff liblapack-doc libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java cups-common low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user liblcms2-utils libmpfi-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv python3.13-venv python3.13-doc binfmt-support perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults ca-certificates lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libcairo2 libcom-err2 libcommons-logging-java libcommons-parent-java libcups2t64 libdbus-1-3 libdebhelper-perl libdeflate0 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0t64 libgraphite2-3 libgs-common libgs10 libgs10-common libgsl-dev libgsl28 libgslcblas0 libgssapi-krb5-2 libharfbuzz0b libice6 libicu76 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3 libkrb5support0 liblcms2-2 liblerc4 libmagic-mgc libmagic1t64 libmath-tamuanova-perl libmpfi0 libnetpbm11t64 libopenjp2-7 libpaper-utils libpaper2 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libproc2-0 libptexenc1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libsharpyuv0 libsm6 libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtext-charwidth-perl libtext-wrapi18n-perl libtiff6 libtool libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2-16 libxmu6 libxpm4 libxrender1 libxt6t64 libzzip-0-13t64 m4 man-db media-types netbase netpbm po-debconf poppler-data preview-latex-style procps python3 python3-minimal python3.13 python3.13-minimal sbuild-build-depends-main-dummy sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tzdata ucf x11-common xdg-utils xfonts-encodings xfonts-utils 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 318 MB/318 MB of archives. After this operation, 791 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9556 B] Get:2 copy:/build/altree-6mMMjt/resolver-5Y420A/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [960 B] Get:3 http://deb.debian.org/debian unstable/main amd64 gawk amd64 1:5.3.2-1 [772 kB] Get:4 file:/srv/reprepro perl-5.42/main amd64 libmath-tamuanova-perl amd64 1.0.2-4+b3 [13.9 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.6-1 [864 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.6-1 [2218 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.5-1 [27.2 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.6-1 [1959 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.6-1 [761 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.5-1 [10.2 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.5-1 [28.2 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 bash-completion all 1:2.16.0-7 [319 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:31 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get:58 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.05.1~dfsg-1 [148 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.05.1~dfsg-1 [479 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-16 [112 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:68 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.10-3 [251 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.43-2 [48.3 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.3 [14.8 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b3 [65.1 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b2 [188 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.05.1~dfsg-1 [2567 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.05.1~dfsg-1 [50.2 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libnetpbm11t64 amd64 2:11.11.00-2+b1 [185 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 netpbm amd64 2:11.11.00-2+b1 [2087 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 fig2dev amd64 1:3.2.9a-4 [449 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.19 [29.4 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 latex-make all 2.4.3-1 [1030 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 33-2 [5852 B] Get:103 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-6 [160 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-6 [170 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-2 [68.6 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.4-2 [1517 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2025.20250727.75242+ds-4 [154 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libtamuanova-0.2 amd64 0.2-5+b3 [9228 B] Get:123 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b2 [25.6 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2025.20250727.75242+ds-4 [50.5 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2025.20250727.75242+ds-4 [58.2 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1+b1 [341 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2025.20250727.75242+ds-4 [99.4 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.2-1 [78.9 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [59.0 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1.1 [350 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2025.20250727.75242+ds-4 [7261 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2025.20250727-2 [23.1 MB] Get:142 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2025.20250727-2 [4991 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 texlive-lang-french all 2025.20250727-2 [149 MB] Get:144 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2025.20250727-2 [1318 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2025.20250727-2 [8455 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2025.20250727-2 [22.1 MB] Get:147 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2025.20250727-2 [27.4 MB] Preconfiguring packages ... Fetched 318 MB in 8s (39.5 MB/s) Selecting previously unselected package gawk. (Reading database ... 14972 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.3.2-1_amd64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.6-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.6-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.6-1_amd64.deb ... Unpacking python3.13-minimal (3.13.6-1) ... Setting up libpython3.13-minimal:amd64 (3.13.6-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... 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Setting up libavahi-client3:amd64 (0.8-16) ... Setting up libxi6:amd64 (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up tex-common (6.19) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libmath-tamuanova-perl (1.0.2-4+b3) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2+b2) ... Setting up latex-make (2.4.3-1) ... Setting up libcups2t64:amd64 (2.4.10-3) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up preview-latex-style (13.2-1.1) ... Setting up debhelper (13.25) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libgs10-common (10.05.1~dfsg-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libgs10:amd64 (10.05.1~dfsg-1) ... Setting up ghostscript (10.05.1~dfsg-1) ... Setting up fig2dev (1:3.2.9a-4) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up texlive-binaries (2025.20250727.75242+ds-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2025.20250727-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-lang-french (2025.20250727-2) ... Setting up texlive-latex-base (2025.20250727-2) ... Setting up texlive-latex-recommended (2025.20250727-2) ... Setting up texlive-pictures (2025.20250727-2) ... Setting up texlive-fonts-recommended (2025.20250727-2) ... Setting up texlive-latex-extra (2025.20250727-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for tex-common (6.19) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures Sat, 16 Aug 2025 18:09:03 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment Sat, 16 Aug 2025 18:09:03 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-3 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 bash-completion_1:2.16.0-7 binutils_2.45-3 binutils-common_2.45-3 binutils-gold_2.44-2 binutils-gold-x86-64-linux-gnu_2.44-2 binutils-x86-64-linux-gnu_2.45-3 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 fig2dev_1:3.2.9a-4 file_1:5.46-5 findutils_4.10.0-3 fontconfig-config_2.15.0-2.3 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-8 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gawk_1:5.3.2-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 ghostscript_10.05.1~dfsg-1 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readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 t1utils_1.41-4 tar_1.35+dfsg-3.1 tex-common_6.19 texlive-base_2025.20250727-2 texlive-binaries_2025.20250727.75242+ds-4 texlive-fonts-recommended_2025.20250727-2 texlive-lang-french_2025.20250727-2 texlive-latex-base_2025.20250727-2 texlive-latex-extra_2025.20250727-2 texlive-latex-recommended_2025.20250727-2 texlive-pictures_2025.20250727-2 tzdata_2025b-5 ucf_3.0052 util-linux_2.41.1-1 x11-common_1:7.7+24 xdg-utils_1.2.1-2 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 16 Aug 2025 18:09:03 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: altree Binary: altree, altree-examples Architecture: any all Version: 1.3.2-2 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Vincent Danjean , Andreas Tille Homepage: https://gitlab.inria.fr/NGS/ALTree Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/altree Vcs-Git: https://salsa.debian.org/med-team/altree.git Testsuite: autopkgtest Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev Package-List: altree deb science optional arch=any altree-examples deb science optional arch=all Checksums-Sha1: 095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz 7aa27b7775707a6660381ef03fb78757f33929b2 7196 altree_1.3.2-2.debian.tar.xz Checksums-Sha256: f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz 1747f795ec12019cdb81c42b9205d0cbdedd8a735df8a653d52ebf0a1f1cec29 7196 altree_1.3.2-2.debian.tar.xz Files: fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz 9812f8181ed7dc8647d1ae8d78a7f09a 7196 altree_1.3.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVnNiUOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFWPg/+PO/ZSp79mrNF/Z9N/k4uXb33LVCruKePa6cf tJJzoEeauulp5hvuwvLUENnN8MUk6N1epGdr0GoRnNWhZcSbn+dyJN5JVZTqVcfV T96GUjOa7mcvpbeH2F/vIUflB7tEo4lI8AS8QwaImBlX8XOdG5HKjmVjKIYztdPl mV8LOkMKwtae/H24ILvtry/wc3D4sCBmuWHRh+DsyesZ5ECCM5I+7oB5eOVxGDrY xkMi/mkefJ2/r4AituMM7IUkI6noXu5NgK20LK7ArIT7rhhDl+iQi08qClFFca34 cvvqUiZgRCndg4nmdRUGUhCLUTsScY9ScID7ihfGO4br02t3xTNoEYTsO0CQ5TYH R/7pDlqBBc2pJ+GBmoJmi8SWXzu5y7Z0pod0jsFkh4VDDLG41yMVYhikjsg2FeFb 7snxJ1hChv9PCczc0hWVUqqT5hAHtO6T8Ll4Pk/kKjVkEVH6RlP17+Sok27xbuq9 flAsWYVo7ADdgxnVt+AChyJWJd4UgxLorxqjOSUE1phQTuCg/vwzh3k6oefYm3Xg 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----------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network altree_1.3.2-2 perl-5.42 amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/altree-6mMMjt/altree-1.3.2 SCHROOT_ALIAS_NAME=perl-5.42-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-676ab1f5-0d10-4f2d-b763-aa3d7aa8959c SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mDebian Perl autobuilder -B -Zxz dpkg-buildpackage: info: source package altree dpkg-buildpackage: info: source version 1.3.2-2+b5 dpkg-buildpackage: info: source distribution perl-5.42 dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' /usr/bin/make -C Documentation distclean || true make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' dh_auto_clean make[1]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Warning: the following files are missing in your kit: CUtils/c_sources/MYMETA.json CUtils/MYMETA.json MYMETA.json Please inform the author. MakeMaker (v7.76) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig/overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. 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Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. 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Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig/association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig/association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig/localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig/option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig/option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. 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Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2025/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[9]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[8]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[7]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[6]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[5]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[4]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/Documentation' dh_auto_build make -j2 make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm make -C c_sources make[4]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" chisq.c cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) Running Mkbootstrap for CUtils () chmod 644 "CUtils.bs" "/usr/bin/perl" "/usr/share/perl/5.42.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.42/ExtUtils/typemap' CUtils.xs > CUtils.xsc x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" double_permutation.c In function ‘pval_min’, inlined from ‘double_permutation’ at double_permutation.c:182:19: double_permutation.c:125:20: warning: ‘*(datatype_t *)local’ may be used uninitialized [-Wmaybe-uninitialized] 125 | datatype_t ret=rep[0]; | ^~~ x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" fisher.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 x86_64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" CUtils.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" mt19937ar.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" myrand.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" resampling.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" rhyper.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" stats.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.42/CORE" z.c z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[4]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/altree-6mMMjt/altree-1.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' cp progs/altree-add-S blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S cp progs/altree blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' make[1]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' dh_auto_test -a make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.01 usr 0.01 sys + 0.08 cusr 0.02 csys = 0.12 CPU) Result: PASS make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 0 wallclock secs ( 0.01 usr 0.01 sys + 0.07 cusr 0.02 csys = 0.11 CPU) Result: PASS make[1]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j2 install DESTDIR=/build/altree-6mMMjt/altree-1.3.2/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' make[2]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/CUtils.so Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Sens.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Input.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Foret.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Tree.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSensPerForet.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Site.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Node.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SitePerForet.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Import.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Base.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SitePerTree.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSens.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/CUtils.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteCollection.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/to_rewrite.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Chi2.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSensPerTree.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Utils.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Nanova.pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/autosplit.ix Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/share/man/man1/altree.1p Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/bin/altree Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/bin/altree-add-S Installing /build/altree-6mMMjt/altree-1.3.2/debian/tmp/usr/bin/altree-convert make[1]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/build/altree-6mMMjt/altree-1.3.2' dh_compress --exclude=.pdf make[1]: Leaving directory '/build/altree-6mMMjt/altree-1.3.2' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-2+b5_amd64.deb'. dpkg-deb: building package 'altree' in '../altree_1.3.2-2+b5_amd64.deb'. dpkg-genbuildinfo --build=any -O../altree_1.3.2-2+b5_amd64.buildinfo dpkg-genchanges --build=any -mDebian Perl autobuilder -O../altree_1.3.2-2+b5_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-08-16T18:09:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 16 Aug 2025 18:09:16 +0000 | +------------------------------------------------------------------------------+ altree_1.3.2-2+b5_amd64.changes: -------------------------------- Format: 1.8 Date: Sat, 16 Aug 2025 18:06:49 +0000 Source: altree (1.3.2-2) Binary: altree altree-dbgsym Binary-Only: yes Architecture: amd64 Version: 1.3.2-2+b5 Distribution: perl-5.42 Urgency: low Maintainer: Debian Perl autobuilder Changed-By: Debian Perl autobuilder Description: altree - program to perform phylogeny-based association and localization a Changes: altree (1.3.2-2+b5) perl-5.42; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.42 Checksums-Sha1: fcc975ddb795e8baba4bd1aaf50190024f17cd9a 355600 altree-dbgsym_1.3.2-2+b5_amd64.deb b0c55accdff8661aacd464ebddc6ed395a6f0ea0 9099 altree_1.3.2-2+b5_amd64.buildinfo c68d2b0f23690f45fc4604f094805da464630f24 341316 altree_1.3.2-2+b5_amd64.deb Checksums-Sha256: 41b6bd586387553ad70a0cb53022568c0d4263083ac9bd1a2dd6bd841d18158b 355600 altree-dbgsym_1.3.2-2+b5_amd64.deb 00319309acbec1b098c50b2e2b3974ef82b16f8fe80cf19d68b1d18eb23698f3 9099 altree_1.3.2-2+b5_amd64.buildinfo 8351675a17d05c99dac29873a379742777e886c5f67ad576b94ff265948a871f 341316 altree_1.3.2-2+b5_amd64.deb Files: f87e16ca2a842821393106834cdb82fb 355600 debug optional altree-dbgsym_1.3.2-2+b5_amd64.deb 7001278f222f29f226b24d2e01479995 9099 science optional altree_1.3.2-2+b5_amd64.buildinfo aad43bfddf89c3b3bf5edd9185af711b 341316 science optional altree_1.3.2-2+b5_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Sat, 16 Aug 2025 18:09:17 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: altree (1.3.2-2) Binary: altree altree-dbgsym Architecture: amd64 Version: 1.3.2-2+b5 Binary-Only-Changes: altree (1.3.2-2+b5) perl-5.42; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for amd64; no source changes. * Rebuild for Perl 5.42 . -- Debian Perl autobuilder Sat, 16 Aug 2025 18:06:49 +0000 Checksums-Md5: f87e16ca2a842821393106834cdb82fb 355600 altree-dbgsym_1.3.2-2+b5_amd64.deb aad43bfddf89c3b3bf5edd9185af711b 341316 altree_1.3.2-2+b5_amd64.deb Checksums-Sha1: fcc975ddb795e8baba4bd1aaf50190024f17cd9a 355600 altree-dbgsym_1.3.2-2+b5_amd64.deb c68d2b0f23690f45fc4604f094805da464630f24 341316 altree_1.3.2-2+b5_amd64.deb Checksums-Sha256: 41b6bd586387553ad70a0cb53022568c0d4263083ac9bd1a2dd6bd841d18158b 355600 altree-dbgsym_1.3.2-2+b5_amd64.deb 8351675a17d05c99dac29873a379742777e886c5f67ad576b94ff265948a871f 341316 altree_1.3.2-2+b5_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 16 Aug 2025 18:09:16 +0000 Build-Path: /build/altree-6mMMjt/altree-1.3.2 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), bash-completion (= 1:2.16.0-7), binutils (= 2.45-3), binutils-common (= 2.45-3), binutils-gold (= 2.44-2), binutils-gold-x86-64-linux-gnu (= 2.44-2), binutils-x86-64-linux-gnu (= 2.45-3), bsdextrautils (= 2.41.1-1), bsdutils (= 1:2.41.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.3.0-5), cpp-14-x86-64-linux-gnu (= 14.3.0-5), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), fig2dev (= 1:3.2.9a-4), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig-config (= 2.15.0-2.3), fonts-lmodern (= 2.005-1), fonts-urw-base35 (= 20200910-8), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-x86-64-linux-gnu (= 14.3.0-5), g++-x86-64-linux-gnu (= 4:14.2.0-1), gawk (= 1:5.3.2-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.3.0-5), gcc-14-base (= 14.3.0-5), gcc-14-x86-64-linux-gnu (= 14.3.0-5), gcc-15-base (= 15.2.0-1), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), ghostscript (= 10.05.1~dfsg-1), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), latex-make (= 2.4.3-1), libacl1 (= 2.3.2-2+b1), libapache-pom-java (= 33-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-1), libatomic1 (= 15.2.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libavahi-client3 (= 0.8-16), libavahi-common-data (= 0.8-16), libavahi-common3 (= 0.8-16), libbinutils (= 2.45-3), libblas-dev (= 3.12.1-6), libblas3 (= 3.12.1-6), libblkid1 (= 2.41.1-1), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcairo2 (= 1.18.4-1+b1), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-1), libcom-err2 (= 1.47.2-3+b3), libcommons-logging-java (= 1.3.0-2), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-3), libctf0 (= 2.45-3), libcups2t64 (= 2.4.10-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdbus-1-3 (= 1.16.2-2), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.25), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-2), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libfontbox-java (= 1:1.8.16-5), libfontconfig1 (= 2.15.0-2.3), libfontenc1 (= 1:1.1.8-1+b2), libfreetype6 (= 2.13.3+dfsg-1), libgcc-14-dev (= 14.3.0-5), libgcc-s1 (= 15.2.0-1), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libglib2.0-0t64 (= 2.84.4-2), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-1), libgprofng0 (= 2.45-3), libgraphite2-3 (= 1.3.14-2+b1), libgs-common (= 10.05.1~dfsg-1), libgs10 (= 10.05.1~dfsg-1), libgs10-common (= 10.05.1~dfsg-1), libgsl-dev (= 2.8+dfsg-5), libgsl28 (= 2.8+dfsg-5), libgslcblas0 (= 2.8+dfsg-5), libgssapi-krb5-2 (= 1.21.3-5), libharfbuzz0b (= 10.2.0-1+b1), libhogweed6t64 (= 3.10.1-1), libhwasan0 (= 15.2.0-1), libice6 (= 2:1.1.1-1), libicu76 (= 76.1-4), libidn12 (= 1.43-2), libidn2-0 (= 2.3.8-3), libijs-0.35 (= 0.35-15.3), libisl23 (= 0.27-1), libitm1 (= 15.2.0-1), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjbig2dec0 (= 0.20-1+b3), libjpeg62-turbo (= 1:2.1.5-4), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkpathsea6 (= 2025.20250727.75242+ds-4), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblastlog2-2 (= 2.41.1-1), liblcms2-2 (= 2.16-2), liblerc4 (= 4.0.0+ds-5), liblsan0 (= 15.2.0-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmath-tamuanova-perl (= 1.0.2-4+b3), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.1-1), libmpc3 (= 1.3.1-1+b3), libmpfi0 (= 1.5.4+ds-4), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnetpbm11t64 (= 2:11.11.00-2+b1), libnettle8t64 (= 3.10.1-1), libopenjp2-7 (= 2.5.3-2.1), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpaper-utils (= 2.2.5-0.3+b2), libpaper2 (= 2.2.5-0.3+b2), libpcre2-8-0 (= 10.45-1), libpdfbox-java (= 1:1.8.16-5), libperl5.42 (= 5.42.0-1), libpipeline1 (= 1.5.8-1), libpixman-1-0 (= 0.44.0-3), libpng16-16t64 (= 1.6.50-1), libpotrace0 (= 1.16-2+b2), libproc2-0 (= 2:4.0.4-9), libptexenc1 (= 2025.20250727.75242+ds-4), libpython3-stdlib (= 3.13.5-1), libpython3.13-minimal (= 3.13.6-1), libpython3.13-stdlib (= 3.13.6-1), libquadmath0 (= 15.2.0-1), libreadline8t64 (= 8.2-6), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-3), libsharpyuv0 (= 1.5.0-0.1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41.1-1), libsqlite3-0 (= 3.46.1-7), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsynctex2 (= 2025.20250727.75242+ds-4), libsystemd0 (= 258~rc2-2), libtamuanova-0.2 (= 0.2-5+b3), libtasn1-6 (= 4.20.0-2), libteckit0 (= 2.5.12+ds1-1+b1), libtest-deep-perl (= 1.205-1), libtexlua53-5 (= 2025.20250727.75242+ds-4), libtext-charwidth-perl (= 0.04-11+b5), libtext-wrapi18n-perl (= 0.06-10), libtiff6 (= 4.7.0-3), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 15.2.0-1), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 258~rc2-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.1-1), libwebp7 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxaw7 (= 2:1.0.16-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxi6 (= 2:1.8.2-1), libxml2-16 (= 2.14.5+dfsg-0.1), libxmu6 (= 2:1.1.3-3+b4), libxpm4 (= 1:3.5.17-1+b3), libxrender1 (= 1:0.9.12-1), libxt6t64 (= 1:1.2.1-1.2+b2), libzstd1 (= 1.5.7+dfsg-1), libzzip-0-13t64 (= 0.13.78+dfsg.1-0.1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), netpbm (= 2:11.11.00-2+b1), openssl-provider-legacy (= 3.5.2-1), patch (= 2.8-2), perl (= 5.42.0-1), perl-base (= 5.42.0-1), perl-modules-5.42 (= 5.42.0-1), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.12-1), preview-latex-style (= 13.2-1.1), procps (= 2:4.0.4-9), python3 (= 3.13.5-1), python3-minimal (= 3.13.5-1), python3.13 (= 3.13.6-1), python3.13-minimal (= 3.13.6-1), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), t1utils (= 1.41-4), tar (= 1.35+dfsg-3.1), tex-common (= 6.19), texlive-base (= 2025.20250727-2), texlive-binaries (= 2025.20250727.75242+ds-4), texlive-fonts-recommended (= 2025.20250727-2), texlive-lang-french (= 2025.20250727-2), texlive-latex-base (= 2025.20250727-2), texlive-latex-extra (= 2025.20250727-2), texlive-latex-recommended (= 2025.20250727-2), texlive-pictures (= 2025.20250727-2), tzdata (= 2025b-5), ucf (= 3.0052), util-linux (= 2.41.1-1), x11-common (= 1:7.7+24), xdg-utils (= 1.2.1-2), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1755367609" +------------------------------------------------------------------------------+ | Package contents Sat, 16 Aug 2025 18:09:17 +0000 | +------------------------------------------------------------------------------+ altree-dbgsym_1.3.2-2+b5_amd64.deb ---------------------------------- new Debian package, version 2.0. size 355600 bytes: control archive=540 bytes. 382 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: altree-dbgsym Source: altree (1.3.2-2) Version: 1.3.2-2+b5 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 363 Depends: altree (= 1.3.2-2+b5) Section: debug Priority: optional Description: debug symbols for altree Build-Ids: 72c849a50fb8a6a78251dbbbaf0f1ac65049fe54 drwxr-xr-x root/root 0 2025-08-16 18:06 ./ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/debug/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/debug/.build-id/72/ -rw-r--r-- root/root 361208 2025-08-16 18:06 ./usr/lib/debug/.build-id/72/c849a50fb8a6a78251dbbbaf0f1ac65049fe54.debug drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/doc/ lrwxrwxrwx root/root 0 2025-08-16 18:06 ./usr/share/doc/altree-dbgsym -> altree altree_1.3.2-2+b5_amd64.deb --------------------------- new Debian package, version 2.0. size 341316 bytes: control archive=1780 bytes. 872 bytes, 17 lines control 2882 bytes, 36 lines md5sums Package: altree Source: altree (1.3.2-2) Version: 1.3.2-2+b5 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 558 Depends: libblas3 | libblas.so.3, libc6 (>= 2.38), libgsl28 (>= 2.8+dfsg), perl (>= 5.42.0-1), perlapi-5.42.0, libmath-tamuanova-perl Recommends: libopenblas0 | libblis4 | libmkl-rt | libblas.so.3 Suggests: altree-examples Section: science Priority: optional Homepage: https://gitlab.inria.fr/NGS/ALTree Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. drwxr-xr-x root/root 0 2025-08-16 18:06 ./ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/bin/ -rwxr-xr-x root/root 55855 2025-08-16 18:06 ./usr/bin/altree -rwxr-xr-x root/root 15365 2025-08-16 18:06 ./usr/bin/altree-add-S -rwxr-xr-x root/root 22801 2025-08-16 18:06 ./usr/bin/altree-convert drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/ -rw-r--r-- root/root 342 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Base.pm -rw-r--r-- root/root 3081 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/CUtils.pm -rw-r--r-- root/root 2897 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Chi2.pm -rw-r--r-- root/root 2817 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Foret.pm -rw-r--r-- root/root 2026 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Import.pm -rw-r--r-- root/root 24521 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Input.pm -rw-r--r-- root/root 2371 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Nanova.pm -rw-r--r-- root/root 5965 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Node.pm -rw-r--r-- root/root 1455 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Sens.pm -rw-r--r-- root/root 1895 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Site.pm -rw-r--r-- root/root 1044 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteCollection.pm -rw-r--r-- root/root 3569 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SitePerForet.pm -rw-r--r-- root/root 876 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SitePerTree.pm -rw-r--r-- root/root 1287 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSens.pm -rw-r--r-- root/root 905 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSensPerForet.pm -rw-r--r-- root/root 2781 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/SiteSensPerTree.pm -rw-r--r-- root/root 4804 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Tree.pm -rw-r--r-- root/root 1467 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/Utils.pm -rw-r--r-- root/root 9288 2021-09-17 14:32 ./usr/lib/x86_64-linux-gnu/perl5/5.42/ALTree/to_rewrite.pm drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/ -rw-r--r-- root/root 74200 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/CUtils.so -rw-r--r-- root/root 95 2025-08-16 18:06 ./usr/lib/x86_64-linux-gnu/perl5/5.42/auto/ALTree/CUtils/autosplit.ix drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/doc-base/ -rw-r--r-- root/root 513 2023-11-29 10:13 ./usr/share/doc-base/altree.altree drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/doc/altree/ -rw-r--r-- root/root 1441 2021-09-17 14:32 ./usr/share/doc/altree/README -rw-r--r-- root/root 321 2023-11-29 10:13 ./usr/share/doc/altree/README.test -rw-r--r-- root/root 205 2025-08-16 18:06 ./usr/share/doc/altree/changelog.Debian.amd64.gz -rw-r--r-- root/root 957 2025-08-16 18:06 ./usr/share/doc/altree/changelog.Debian.gz -rw-r--r-- root/root 2601 2021-09-17 14:32 ./usr/share/doc/altree/changelog.gz -rw-r--r-- root/root 1223 2023-11-29 10:13 ./usr/share/doc/altree/copyright -rw-r--r-- root/root 277167 2025-08-16 18:06 ./usr/share/doc/altree/manual.pdf drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/man/ drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/man/man1/ -rw-r--r-- root/root 1745 2025-08-16 18:06 ./usr/share/man/man1/altree-add-S.1p.gz -rw-r--r-- root/root 1819 2025-08-16 18:06 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 2851 2025-08-16 18:06 ./usr/share/man/man1/altree.1p.gz drwxr-xr-x root/root 0 2025-08-16 18:06 ./usr/share/man/man3/ -rw-r--r-- root/root 1602 2025-08-16 18:06 ./usr/share/man/man3/ALTree::CUtils.3pm.gz +------------------------------------------------------------------------------+ | Post Build Sat, 16 Aug 2025 18:09:17 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 16 Aug 2025 18:09:17 +0000 | +------------------------------------------------------------------------------+ Purging /build/altree-6mMMjt Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 16 Aug 2025 18:09:18 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: any Build-Space: 17980 Build-Time: 13 Distribution: perl-5.42 Host Architecture: amd64 Install-Time: 127 Job: /srv/debomatic/incoming/altree_1.3.2-2.dsc Machine Architecture: amd64 Package: altree Package-Time: 147 Source-Version: 1.3.2-2 Space: 17980 Status: successful Version: 1.3.2-2+b5 -------------------------------------------------------------------------------- Finished at 2025-08-16T18:09:16Z Build needed 00:02:27, 17980k disk space