sbuild (Debian sbuild) 0.91.1 (08 October 2025) on carme.larted.org.uk +==============================================================================+ | norsp 1.0.6-8 (amd64) Sat, 15 Nov 2025 01:01:48 +0000 | +==============================================================================+ Package: norsp Version: 1.0.6-8 Source Version: 1.0.6-8 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sat, 15 Nov 2025 01:01:49 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup norsp_1.0.6-8 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup norsp_1.0.6-8 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sat, 15 Nov 2025 01:01:49 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Sat, 15 Nov 2025 01:01:50 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/norsp_1.0.6-8.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sat, 15 Nov 2025 01:01:51 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ InRelease Get:2 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ Release [609 B] Ign:3 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ Release.gpg Get:4 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ Sources [600 B] Get:5 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.8 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 copy:/build/norsp-0vr8K1/resolver-t6zkzh/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.4 [640 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Preconfiguring packages ... Fetched 10.8 MB in 0s (151 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23311 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.2-1_amd64.deb ... Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... 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Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.2-1) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.2-1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Sat, 15 Nov 2025 01:01:55 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sat, 15 Nov 2025 01:01:55 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.16.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.16.5-1 (2025-09-05) amd64 (x86_64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-14_14.3.0-10 g++-15_15.2.0-8 gcc-14_14.3.0-10 gcc-15_15.2.0-8 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 linux-libc-dev_6.17.7-2 Package versions: adduser_3.153 apt_3.1.12 autoconf_2.72-3.1 automake_1:1.18.1-2 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45-8 binutils-common_2.45-8 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.45-8 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-14_14.3.0-10 cpp-14-x86-64-linux-gnu_14.3.0-10 cpp-15_15.2.0-8 cpp-15-x86-64-linux-gnu_15.2.0-8 cpp-x86-64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.8-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:15.2.0-4 g++-14_14.3.0-10 g++-14-x86-64-linux-gnu_14.3.0-10 g++-15_15.2.0-8 g++-15-x86-64-linux-gnu_15.2.0-8 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-14_14.3.0-10 gcc-14-base_14.3.0-10 gcc-14-x86-64-linux-gnu_14.3.0-10 gcc-15_15.2.0-8 gcc-15-base_15.2.0-8 gcc-15-x86-64-linux-gnu_15.2.0-8 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.2-1 gettext-base_0.23.2-1 gnupg_2.4.8-4 gnupg-l10n_2.4.8-4 gpg_2.4.8-4 gpg-agent_2.4.8-4 gpgconf_2.4.8-4 gpgsm_2.4.8-4 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.12 libarchive-zip-perl_1.68-1 libasan8_15.2.0-8 libassuan9_3.0.2-2 libatomic1_15.2.0-8 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-8 libblkid1_2.41.2-4 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc-l10n_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-8 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45-8 libctf0_2.45-8 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.281 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.194-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgcc-14-dev_14.3.0-10 libgcc-15-dev_15.2.0-8 libgcc-s1_15.2.0-8 libgcrypt20_1.11.2-3 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.10-3 libgomp1_15.2.0-8 libgpg-error0_1.56-2 libgprofng0_2.45-8 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-8 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-8 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.2-4 libldap2_2.6.10+dfsg-1+b1 liblsan0_15.2.0-8 liblz4-1_1.10.0-6 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnpth0t64_1.8-3 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-6 libperl5.42_5.42.0-2 libpipeline1_1.5.8-1 libquadmath0_15.2.0-8 libreadline8t64_8.3-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-2 libsemanage-common_3.9-1 libsemanage2_3.9-1 libsepol2_3.9-2 libsframe2_2.45-8 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libssl3t64_3.5.4-1 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 libsystemd0_258.1-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-7 libtsan2_15.2.0-8 libubsan1_15.2.0-8 libuchardet0_0.0.8-2 libudev1_258.1-2 libunistring5_1.3-2 libuuid1_2.41.2-4 libxml2-16_2.15.1+dfsg-0.4 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.7-2 locales-all_2.41-12 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-2 patch_2.8-2 perl_5.42.0-2 perl-base_5.42.0-2 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-2 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.15-5 tar_1.35+dfsg-3.1 util-linux_2.41.2-4 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sat, 15 Nov 2025 01:01:55 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: norsp Binary: norsp Architecture: all Version: 1.0.6-8 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Eva Reisinger , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/norsp Vcs-Git: https://salsa.debian.org/med-team/norsp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: norsp deb science optional arch=all Checksums-Sha1: 34b229266051983c3f69b5666bc8ec18c647e03f 460976 norsp_1.0.6.orig.tar.gz 3e863fa6ebecc00f95c51fd38bb7d835404ec9ca 5332 norsp_1.0.6-8.debian.tar.xz Checksums-Sha256: 2f654e5b11b4191942a58ff69837cb8a77fc0417b48d40b76904a7e29863d809 460976 norsp_1.0.6.orig.tar.gz dadaa9698ab0bbdb6b7849b463b1e2b7d42203fb676a4985387f999f9d1f6ba1 5332 norsp_1.0.6-8.debian.tar.xz Files: f21b74fbf83c57cbedf7cd7b5b21959a 460976 norsp_1.0.6.orig.tar.gz 6161b109458dc5ae45649157178309fe 5332 norsp_1.0.6-8.debian.tar.xz Dgit: f259bc3c5cad338f29baa3f261c5f08c2f9d86e1 debian archive/debian/1.0.6-8 https://git.dgit.debian.org/norsp -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmkXTHAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpvzA//X+A/rJG0ZIrF7OF1OsJtczH1WKXA el4hMFqINTKxNUpdnBzsGBZYkq1uoovRIcohKZyryjndl7XIEgyYU5u5LuZaW+hJ PL5NJAxyX5FqNO+czVYzETsa4SWesfBGEQlf1PcgSyxh5hsy2XqZ6Ec9V3VzYOFH Y2JSg9FbjxwrlddV5H0MJ1H/GhJ5urIX+c2Ca6AiqIxJm/HgRBG8sW/Xm597qO00 KnFE12IJDuVDSbiI2H6R/iJm4Xu47v45fKipPBAmlRuqxEjhm5EZMbT0NvjVhthd 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Starting Timed Build Commands Sat, 15 Nov 2025 01:01:55 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network norsp_1.0.6-8 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network norsp_1.0.6-8 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/norsp-0vr8K1/norsp-1.0.6 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-20745b73-1eee-4b5d-94d1-6149823b42d6 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package norsp dpkg-buildpackage: info: source version 1.0.6-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building norsp using existing ./norsp_1.0.6.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building norsp in norsp_1.0.6-8.debian.tar.xz dpkg-source: info: building norsp in norsp_1.0.6-8.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf Makefile.am:9: warning: '%'-style pattern rules are a GNU make extension dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1002' is supported by ustar format... yes checking whether GID '110' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j2 make[1]: Entering directory '/build/norsp-0vr8K1/norsp-1.0.6' sed -e 's|__docdir__|/usr/share/doc/norsp|g;s|__pkgdatadir__|/usr/share/norsp|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__VERSION__|1.0.6|g' "norsp" | \ pod2man -c 'User Commands' -r "1.0.6" -name NORSP > "norsp.1" make[1]: Leaving directory '/build/norsp-0vr8K1/norsp-1.0.6' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/norsp/ make -j2 install DESTDIR=/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/norsp-0vr8K1/norsp-1.0.6' make[2]: Entering directory '/build/norsp-0vr8K1/norsp-1.0.6' mkdir -p '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/doc/norsp' && cp -r '.'/examples '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/doc/norsp/' /usr/bin/mkdir -p '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/bin' rm -rf `find '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/doc/norsp' -name .svn` /usr/bin/install -c norsp '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/bin' /usr/bin/mkdir -p '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/man/man1' chmod -R u+w '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/doc/norsp' make install-exec-hook /usr/bin/install -c -m 644 norsp.1 '/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/share/man/man1' make[3]: Entering directory '/build/norsp-0vr8K1/norsp-1.0.6' sed -i -e 's|__docdir__|/usr/share/doc/norsp|g;s|__pkgdatadir__|/usr/share/norsp|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.6|g;' "/build/norsp-0vr8K1/norsp-1.0.6/debian/norsp/usr/bin/norsp" make[3]: Leaving directory '/build/norsp-0vr8K1/norsp-1.0.6' make[2]: Leaving directory '/build/norsp-0vr8K1/norsp-1.0.6' make[1]: Leaving directory '/build/norsp-0vr8K1/norsp-1.0.6' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/norsp-0vr8K1/norsp-1.0.6' dh_compress \ -Xexamples/query.fasta \ -Xexamples/query.hssp \ -Xexamples/query.prof \ -Xexamples/query.phdHtm \ -Xexamples/query.coils make[1]: Leaving directory '/build/norsp-0vr8K1/norsp-1.0.6' dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'norsp' in '../norsp_1.0.6-8_all.deb'. dpkg-genbuildinfo -O../norsp_1.0.6-8_amd64.buildinfo dpkg-genchanges -O../norsp_1.0.6-8_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-11-15T01:02:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sat, 15 Nov 2025 01:02:00 +0000 | +------------------------------------------------------------------------------+ norsp_1.0.6-8_amd64.changes: ---------------------------- Format: 1.8 Date: Fri, 14 Nov 2025 16:33:24 +0100 Source: norsp Binary: norsp Architecture: source all Version: 1.0.6-8 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: norsp - predictor of non-regular secondary structure Closes: 1115455 Changes: norsp (1.0.6-8) unstable; urgency=medium . * Team upload. * d/control: drop Recommends removed from Debian. (Closes: #1115455) * d/control: drop redundant dependency on debhelper. * d/control: declare compliance to standards version 4.7.2. * d/control: drop redundant Rules-Requires-Root: no. * d/copyright: drop the old FSF mail address. * d/rules: slight readability improvement. * no_pp_popcon_cnt.patch: normalize dep3 header. * d/watch: convert to v5 untrackabe watch file. Checksums-Sha1: 9df3637dca1aa83a955e61020a94b50828e18b33 1144 norsp_1.0.6-8.dsc 62cfb87a6f3aa144620f698cf9675e9420ea6829 5332 norsp_1.0.6-8.debian.tar.xz 1d71f6eded8a4ab7360a2fbee2d65016949f5dab 279092 norsp_1.0.6-8_all.deb 5f85ecd27a33e3a8c792d718c567bcfce62ad324 4839 norsp_1.0.6-8_amd64.buildinfo Checksums-Sha256: 9dc299138b186d1cb181279f50bf8ab124e20875994b6c12b59b1878bff969a1 1144 norsp_1.0.6-8.dsc 41c55578d0e784ef3395c94551de3ff9aac88f8be4456d376d2d67cfb58b81e6 5332 norsp_1.0.6-8.debian.tar.xz 0fc10a2dab0a11b912121246ccadc38dd48da9dcbe8ae461c1e292c73e39a356 279092 norsp_1.0.6-8_all.deb 9bd5338908b96cf9d75fe359eca9d2ce041ba46cf6ba70fee2d468570a9aef2e 4839 norsp_1.0.6-8_amd64.buildinfo Files: 05051f843a19f85d9a63b646dceaf2f3 1144 science optional norsp_1.0.6-8.dsc 673e431092e6171d2cca62134aa18165 5332 science optional norsp_1.0.6-8.debian.tar.xz fda07be409685986d57947b782132bfe 279092 science optional norsp_1.0.6-8_all.deb ea539c1ac5ee889f34315ccb9c16c8a3 4839 science optional norsp_1.0.6-8_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sat, 15 Nov 2025 01:02:00 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: norsp Binary: norsp Architecture: all source Version: 1.0.6-8 Checksums-Md5: 05051f843a19f85d9a63b646dceaf2f3 1144 norsp_1.0.6-8.dsc fda07be409685986d57947b782132bfe 279092 norsp_1.0.6-8_all.deb Checksums-Sha1: 9df3637dca1aa83a955e61020a94b50828e18b33 1144 norsp_1.0.6-8.dsc 1d71f6eded8a4ab7360a2fbee2d65016949f5dab 279092 norsp_1.0.6-8_all.deb Checksums-Sha256: 9dc299138b186d1cb181279f50bf8ab124e20875994b6c12b59b1878bff969a1 1144 norsp_1.0.6-8.dsc 0fc10a2dab0a11b912121246ccadc38dd48da9dcbe8ae461c1e292c73e39a356 279092 norsp_1.0.6-8_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 15 Nov 2025 01:02:00 +0000 Build-Path: /build/norsp-0vr8K1/norsp-1.0.6 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-2), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45-8), binutils-common (= 2.45-8), binutils-x86-64-linux-gnu (= 2.45-8), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-14 (= 14.3.0-10), cpp-14-x86-64-linux-gnu (= 14.3.0-10), cpp-15 (= 15.2.0-8), cpp-15-x86-64-linux-gnu (= 15.2.0-8), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-8), g++-15-x86-64-linux-gnu (= 15.2.0-8), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-14 (= 14.3.0-10), gcc-14-base (= 14.3.0-10), gcc-14-x86-64-linux-gnu (= 14.3.0-10), gcc-15 (= 15.2.0-8), gcc-15-base (= 15.2.0-8), gcc-15-x86-64-linux-gnu (= 15.2.0-8), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-8), libatomic1 (= 15.2.0-8), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-8), libblkid1 (= 2.41.2-4), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-8), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libdb5.3t64 (= 5.3.28+dfsg2-10), libdebconfclient0 (= 0.281), libdebhelper-perl (= 13.28), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.194-1), libfile-stripnondeterminism-perl (= 1.15.0-1), libgcc-14-dev (= 14.3.0-10), libgcc-15-dev (= 15.2.0-8), libgcc-s1 (= 15.2.0-8), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgmp10 (= 2:6.3.0+dfsg-5), libgomp1 (= 15.2.0-8), libgprofng0 (= 2.45-8), libhwasan0 (= 15.2.0-8), libisl23 (= 0.27-1), libitm1 (= 15.2.0-8), libjansson4 (= 2.14-2+b3), liblsan0 (= 15.2.0-8), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.46-1), libperl5.42 (= 5.42.0-2), libpipeline1 (= 1.5.8-1), libquadmath0 (= 15.2.0-8), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libsframe2 (= 2.45-8), libsmartcols1 (= 2.41.2-4), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-8), libstdc++6 (= 15.2.0-8), libsystemd0 (= 258.1-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtsan2 (= 15.2.0-8), libubsan1 (= 15.2.0-8), libuchardet0 (= 0.0.8-2), libudev1 (= 258.1-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-4), libxml2-16 (= 2.15.1+dfsg-0.4), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.7-2), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.42.0-2), perl-base (= 5.42.0-2), perl-modules-5.42 (= 5.42.0-2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-5), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.2-4), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1763134404" +------------------------------------------------------------------------------+ | Package contents Sat, 15 Nov 2025 01:02:01 +0000 | +------------------------------------------------------------------------------+ norsp_1.0.6-8_all.deb --------------------- new Debian package, version 2.0. size 279092 bytes: control archive=1416 bytes. 1297 bytes, 25 lines control 1055 bytes, 15 lines md5sums Package: norsp Version: 1.0.6-8 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 1595 Depends: perl:any Recommends: librg-utils-perl, ncoils Section: science Priority: optional Multi-Arch: foreign Homepage: https://rostlab.org/owiki/index.php/NORSp_-_predictor_of_NOn-Regular_Secondary_Structure Description: predictor of non-regular secondary structure NORSp is a publicly available predictor for disordered regions in proteins. Specifically, it predicts long regions with no regular secondary structure. Upon submission of a protein sequence, NORSp analyses the protein about its secondary structure, the presence of transmembrane helices and coiled-coils. It then returns the presence and position of disordered regions. . NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the protein-protein interaction sites coincide with NORS regions. drwxr-xr-x root/root 0 2025-11-14 15:33 ./ drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/ drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/bin/ -rwxr-xr-x root/root 26432 2025-11-14 15:33 ./usr/bin/norsp drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/ drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/doc/norsp/ -rw-r--r-- root/root 278 2025-11-14 15:33 ./usr/share/doc/norsp/README.test -rw-r--r-- root/root 892 2025-11-14 15:33 ./usr/share/doc/norsp/changelog.Debian.gz -rw-r--r-- root/root 435 2013-09-30 17:57 ./usr/share/doc/norsp/changelog.gz -rw-r--r-- root/root 1106 2025-11-14 15:33 ./usr/share/doc/norsp/copyright drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/doc/norsp/examples/ -rw-r--r-- root/root 24652 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.coils -rw-r--r-- root/root 105995 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.coils_raw -rw-r--r-- root/root 2719 2010-12-22 14:33 ./usr/share/doc/norsp/examples/query.fasta -rw-r--r-- root/root 1170312 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.hssp -rw-r--r-- root/root 20580 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.nors -rw-r--r-- root/root 73441 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.phdHtm -rw-r--r-- root/root 186909 2013-09-30 17:56 ./usr/share/doc/norsp/examples/query.prof -rw-r--r-- root/root 2 2010-12-22 14:33 ./usr/share/doc/norsp/examples/query.sumNors -rw-r--r-- root/root 684 2025-11-14 15:33 ./usr/share/doc/norsp/run-unit-test drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/man/ drwxr-xr-x root/root 0 2025-11-14 15:33 ./usr/share/man/man1/ -rw-r--r-- root/root 523 2025-11-14 15:33 ./usr/share/man/man1/norsp.1.gz +------------------------------------------------------------------------------+ | Post Build Sat, 15 Nov 2025 01:02:01 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sat, 15 Nov 2025 01:02:01 +0000 | +------------------------------------------------------------------------------+ Purging /build/norsp-0vr8K1 Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sat, 15 Nov 2025 01:02:01 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 4676 Build-Time: 5 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/norsp_1.0.6-8.dsc Machine Architecture: amd64 Package: norsp Package-Time: 12 Source-Version: 1.0.6-8 Space: 4676 Status: successful Version: 1.0.6-8 -------------------------------------------------------------------------------- Finished at 2025-11-15T01:02:00Z Build needed 00:00:12, 4676k disk space