sbuild (Debian sbuild) 0.91.1 (08 October 2025) on carme.larted.org.uk +==============================================================================+ | libchado-perl 1.31-7 (amd64) Thu, 20 Nov 2025 05:10:38 +0000 | +==============================================================================+ Package: libchado-perl Version: 1.31-7 Source Version: 1.31-7 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Thu, 20 Nov 2025 05:10:39 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libchado-perl_1.31-7 perl-5.42-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libchado-perl_1.31-7 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Thu, 20 Nov 2025 05:10:39 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Hit:3 http://deb.debian.org/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Thu, 20 Nov 2025 05:10:45 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libchado-perl_1.31-7.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Thu, 20 Nov 2025 05:10:45 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential, perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl Filtered Build-Depends: debhelper-compat (= 13), libmodule-build-perl, build-essential, perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ InRelease Get:2 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ Release [615 B] Ign:3 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ Release.gpg Get:4 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ Sources [1012 B] Get:5 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ Packages [1032 B] Fetched 2659 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Solving dependencies... The following additional packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base graphviz groff-base intltool-debian libabsl20240722 libalgorithm-diff-perl libann0 libaom3 libappconfig-perl libarchive-zip-perl libavif16 libb-hooks-op-check-perl libbio-perl-perl libbrotli1 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcdt5 libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-accessor-chained-perl libclass-accessor-perl libclass-data-inheritable-perl libclass-dbi-pager-perl libclass-dbi-perl libclass-dbi-pg-perl libclass-inspector-perl libclass-makemethods-perl libclass-method-modifiers-perl libclass-trigger-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libdata-page-perl libdata-stag-perl libdatrie1 libdav1d7 libdbd-pg-perl libdbi-perl libdbix-contextualfetch-perl libdbix-dbschema-perl libdbix-dbstag-perl libde265-0 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdigest-md5-file-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libexporter-lite-perl libfile-listing-perl libfile-sharedir-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd3 libglib2.0-0t64 libgo-perl libgraph-perl libgraphite2-3 libgraphviz-perl libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libima-dbi-perl libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblerc4 liblog-log4perl-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl libmodule-runtime-perl libmoo-perl libnet-http-perl libnet-ssleay-perl libpackage-variant-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpipeline1 libpixman-1-0 libpng16-16t64 libpq5 libproc2-0 librav1e0.8 librole-tiny-perl libset-object-perl libsharpyuv0 libsm6 libsql-translator-perl libstrictures-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvtav1enc2 libtemplate-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-charwidth-perl libtext-diff-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtimedate-perl libtool libtry-tiny-perl libuchardet0 libuniversal-moniker-perl liburi-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxml2-16 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyaml-perl libyuv0 m4 man-db netbase openssl perl-openssl-defaults po-debconf procps sensible-utils ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gsfonts graphviz-doc groff libxml-sax-expatxs-perl libclass-dbi-loader-perl libclass-dbi-mysql-perl libclass-dbi-sqlite-perl libmldbm-perl libnet-daemon-perl libsql-statement-perl libgd-tools low-memory-monitor krb5-doc krb5-user libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc libdata-dump-perl libdbd-csv-perl liblog-dispatch-filerotate-perl librrds-perl libxml-dom-perl libcrypt-ssleay-perl libscalar-number-perl libpq-oauth libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libtemplate-plugin-gd-perl libtemplate-plugin-xml-perl libtool-doc gfortran | fortran95-compiler libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl libapache-dbi-perl libace-perl liblist-moreutils-perl libset-scalar-perl curl | wget | lynx fonts-liberation libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl libclass-dbi-abstractsearch-perl perl-tk libmldbm-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libxml-checker-perl xsltproc libgts-bin libheif-plugin-x265 libheif-plugin-aomenc libhtml-format-perl libio-compress-brotli-perl krb5-locales libipc-shareable-perl liblog-dispatch-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl libnamespace-clean-perl libjson-maybexs-perl libtext-recordparser-perl libxstring-perl libltdl-dev liblingua-en-inflect-perl libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libtext-iconv-perl libtie-ixhash-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext gettext-base graphviz groff-base intltool-debian libabsl20240722 libalgorithm-diff-perl libann0 libaom3 libappconfig-perl libarchive-zip-perl libavif16 libb-hooks-op-check-perl libbio-perl-perl libbrotli1 libcairo2 libcapture-tiny-perl libcarp-clan-perl libcdt5 libcgi-pm-perl libcgi-session-perl libcgraph6 libclass-accessor-chained-perl libclass-accessor-perl libclass-data-inheritable-perl libclass-dbi-pager-perl libclass-dbi-perl libclass-dbi-pg-perl libclass-inspector-perl libclass-makemethods-perl libclass-method-modifiers-perl libclass-trigger-perl libclass-xsaccessor-perl libclone-perl libcom-err2 libdata-page-perl libdata-stag-perl libdatrie1 libdav1d7 libdbd-pg-perl libdbi-perl libdbix-contextualfetch-perl libdbix-dbschema-perl libdbix-dbstag-perl libde265-0 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-stacktrace-perl libdigest-md5-file-perl libdynaloader-functions-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libexporter-lite-perl libfile-listing-perl libfile-sharedir-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfreezethaw-perl libfribidi0 libgav1-1 libgd-perl libgd3 libglib2.0-0t64 libgo-perl libgraph-perl libgraphite2-3 libgraphviz-perl libgssapi-krb5-2 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheap-perl libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libima-dbi-perl libimagequant0 libimport-into-perl libio-html-perl libio-pty-perl libio-socket-ssl-perl libio-string-perl libio-stringy-perl libipc-run-perl libjbig0 libjpeg62-turbo libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblab-gamut1 liblerc4 liblog-log4perl-perl libltdl7 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libmodule-build-perl libmodule-runtime-perl libmoo-perl libnet-http-perl libnet-ssleay-perl libpackage-variant-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparams-classify-perl libparse-recdescent-perl libpathplan4 libpipeline1 libpixman-1-0 libpng16-16t64 libpq5 libproc2-0 librav1e0.8 librole-tiny-perl libset-object-perl libsharpyuv0 libsm6 libsql-translator-perl libstrictures-perl libsub-name-perl libsub-quote-perl libsub-uplevel-perl libsvtav1enc2 libtemplate-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-charwidth-perl libtext-diff-perl libtext-wrapi18n-perl libthai-data libthai0 libtiff6 libtimedate-perl libtool libtry-tiny-perl libuchardet0 libuniversal-moniker-perl liburi-perl libwebp7 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml-twig-perl libxml-xpath-perl libxml2-16 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 libyaml-perl libyuv0 m4 man-db netbase openssl perl-openssl-defaults po-debconf procps sbuild-build-depends-main-dummy sensible-utils ucf x11-common 0 upgraded, 214 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB/47.4 MB of archives. After this operation, 151 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9556 B] Get:2 copy:/build/libchado-perl-wr5mAK/resolver-0L5Nfs/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1000 B] Get:3 file:/srv/reprepro perl-5.42/main amd64 libcdt5 amd64 2.42.4-3+b1 [40.6 kB] Get:4 file:/srv/reprepro perl-5.42/main amd64 libcgraph6 amd64 2.42.4-3+b1 [64.4 kB] Get:5 file:/srv/reprepro perl-5.42/main amd64 libpathplan4 amd64 2.42.4-3+b1 [42.8 kB] Get:6 file:/srv/reprepro perl-5.42/main amd64 libgvc6 amd64 2.42.4-3+b1 [687 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:8 file:/srv/reprepro perl-5.42/main amd64 libgvpr2 amd64 2.42.4-3+b1 [192 kB] Get:9 file:/srv/reprepro perl-5.42/main amd64 liblab-gamut1 amd64 2.42.4-3+b1 [198 kB] Get:10 file:/srv/reprepro perl-5.42/main amd64 graphviz amd64 2.42.4-3+b1 [618 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:12 file:/srv/reprepro perl-5.42/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b3 [10.6 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:14 file:/srv/reprepro perl-5.42/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [100 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:16 file:/srv/reprepro perl-5.42/main amd64 libsub-name-perl amd64 0.28-1+b1 [12.5 kB] Get:17 file:/srv/reprepro perl-5.42/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB] Get:18 file:/srv/reprepro perl-5.42/main amd64 libdbi-perl amd64 1.647-1+b1 [864 kB] Get:19 file:/srv/reprepro perl-5.42/main amd64 libpq5 amd64 18.1-1+b1 [249 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:22 file:/srv/reprepro perl-5.42/main amd64 libdbd-pg-perl amd64 3.18.0-2+b1 [216 kB] Get:23 file:/srv/reprepro perl-5.42/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b6 [36.3 kB] Get:24 file:/srv/reprepro perl-5.42/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [341 kB] Get:25 file:/srv/reprepro perl-5.42/main amd64 libxml-parser-perl amd64 2.47-1+b4 [199 kB] Get:26 file:/srv/reprepro perl-5.42/main amd64 libdevel-callchecker-perl amd64 0.009-2+b1 [15.9 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:28 file:/srv/reprepro perl-5.42/main amd64 libgd-perl amd64 2.83-1+b1 [133 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:30 file:/srv/reprepro perl-5.42/main amd64 libio-pty-perl amd64 1:1.20-1+b4 [34.5 kB] Get:31 file:/srv/reprepro perl-5.42/main amd64 libset-object-perl amd64 1.43-1+b1 [38.0 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:33 file:/srv/reprepro perl-5.42/main amd64 libparams-classify-perl amd64 0.015-2+b5 [22.5 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB] Get:36 file:/srv/reprepro perl-5.42/main amd64 libtemplate-perl amd64 3.102-1+b1 [553 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:39 file:/srv/reprepro perl-5.42/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-6+b2 [315 kB] Get:40 file:/srv/reprepro perl-5.42/main amd64 libxml-libxslt-perl amd64 2.003000-3+b2 [48.1 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:45 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:55 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-2 [231 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:73 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.4 [640 kB] Get:76 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:81 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:85 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.2-1 [564 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-6 [978 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get:95 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get:96 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get:97 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get:98 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get:99 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.20.2-2+b1 [19.1 kB] Get:100 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.16-1 [189 kB] Get:101 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.20.2-2+b1 [17.7 kB] Get:102 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.20.2-2+b1 [601 kB] Get:103 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get:104 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:105 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get:106 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get:107 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get:108 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get:109 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:110 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:111 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:112 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:113 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:114 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b3 [56.2 kB] Get:115 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-13 [126 kB] Get:116 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB] Get:117 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB] Get:118 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get:119 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:120 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:121 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:122 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:123 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:124 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-7 [416 kB] Get:125 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get:126 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get:127 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get:128 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:129 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-4 [38.0 kB] Get:130 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB] Get:131 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.56.3-2 [239 kB] Get:132 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.56.3-2 [62.0 kB] Get:133 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.56.3-2 [38.1 kB] Get:134 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get:135 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:136 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:137 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.3 [208 kB] Get:138 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b4 [59.0 kB] Get:139 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB] Get:140 http://deb.debian.org/debian unstable/main amd64 libappconfig-perl all 1.71-2.3 [67.0 kB] Get:141 http://deb.debian.org/debian unstable/main amd64 libcarp-clan-perl all 6.08-2 [14.1 kB] Get:142 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:143 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB] Get:144 http://deb.debian.org/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB] Get:145 http://deb.debian.org/debian unstable/main amd64 libcgi-session-perl all 4.48-4 [118 kB] Get:146 http://deb.debian.org/debian unstable/main amd64 libclass-accessor-perl all 0.51-2 [22.7 kB] Get:147 http://deb.debian.org/debian unstable/main amd64 libclass-accessor-chained-perl all 0.01.1~debian-5 [8704 B] Get:148 http://deb.debian.org/debian unstable/main amd64 libio-stringy-perl all 2.113-2 [48.3 kB] Get:149 http://deb.debian.org/debian unstable/main amd64 libclass-trigger-perl all 0.15-2 [12.4 kB] Get:150 http://deb.debian.org/debian unstable/main amd64 libdbix-contextualfetch-perl all 1.03-5 [8352 B] Get:151 http://deb.debian.org/debian unstable/main amd64 libima-dbi-perl all 0.35-3 [23.3 kB] Get:152 http://deb.debian.org/debian unstable/main amd64 libuniversal-moniker-perl all 0.08-10 [6108 B] Get:153 http://deb.debian.org/debian unstable/main amd64 libclass-dbi-perl all 3.0.17-5 [106 kB] Get:154 http://deb.debian.org/debian unstable/main amd64 libdata-page-perl all 2.03-1 [11.6 kB] Get:155 http://deb.debian.org/debian unstable/main amd64 libexporter-lite-perl all 0.09-2 [10.7 kB] Get:156 http://deb.debian.org/debian unstable/main amd64 libclass-dbi-pager-perl all 0.08-6 [8112 B] Get:157 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB] Get:158 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get:159 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB] Get:160 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:161 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB] Get:162 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB] Get:163 http://deb.debian.org/debian unstable/main amd64 libclass-dbi-pg-perl all 0.09-6 [9700 B] Get:164 http://deb.debian.org/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:165 http://deb.debian.org/debian unstable/main amd64 libclass-makemethods-perl all 1.01-7 [293 kB] Get:166 http://deb.debian.org/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:167 http://deb.debian.org/debian unstable/main amd64 libfreezethaw-perl all 0.5001-3 [16.0 kB] Get:168 http://deb.debian.org/debian unstable/main amd64 libdbix-dbschema-perl all 0.47-1 [57.1 kB] Get:169 http://deb.debian.org/debian unstable/main amd64 libparse-recdescent-perl all 1.967015+dfsg-4 [147 kB] Get:170 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:171 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:172 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:173 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:174 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:175 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:176 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:177 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB] Get:178 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:179 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:180 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:181 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB] Get:182 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB] Get:183 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:184 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:185 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:186 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB] Get:187 http://deb.debian.org/debian unstable/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:188 http://deb.debian.org/debian unstable/main amd64 libdbix-dbstag-perl all 0.12-4 [102 kB] Get:189 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get:190 http://deb.debian.org/debian unstable/main amd64 libdigest-md5-file-perl all 0.08-2 [9404 B] Get:191 http://deb.debian.org/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:192 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20250809.0-1 [104 kB] Get:193 http://deb.debian.org/debian unstable/main amd64 libxml-twig-perl all 1:3.54-1 [177 kB] Get:194 http://deb.debian.org/debian unstable/main amd64 libxml-xpath-perl all 1.48-1 [71.0 kB] Get:195 http://deb.debian.org/debian unstable/main amd64 libgraphviz-perl all 2.24-1 [92.7 kB] Get:196 http://deb.debian.org/debian unstable/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:197 http://deb.debian.org/debian unstable/main amd64 libgo-perl all 0.15-10 [265 kB] Get:198 http://deb.debian.org/debian unstable/main amd64 libheap-perl all 0.80-5 [34.3 kB] Get:199 http://deb.debian.org/debian unstable/main amd64 libgraph-perl all 1:0.9735-1 [111 kB] Get:200 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get:201 http://deb.debian.org/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:202 http://deb.debian.org/debian unstable/main amd64 liblog-log4perl-perl all 1.57-1 [367 kB] Get:203 http://deb.debian.org/debian unstable/main amd64 libmodule-build-perl all 0.423400-3 [234 kB] Get:204 http://deb.debian.org/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:205 http://deb.debian.org/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB] Get:206 http://deb.debian.org/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:207 http://deb.debian.org/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:208 http://deb.debian.org/debian unstable/main amd64 libpackage-variant-perl all 1.003002-2 [13.9 kB] Get:209 http://deb.debian.org/debian unstable/main amd64 libsql-translator-perl all 1.66-1 [364 kB] Get:210 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:211 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:212 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:213 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.3 [158 kB] Get:214 http://deb.debian.org/debian unstable/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Preconfiguring packages ... Fetched 42.3 MB in 0s (125 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 23311 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libtext-charwidth-perl:amd64. Preparing to unpack .../001-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package netbase. Preparing to unpack .../002-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../003-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. 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Unpacking gettext-base (0.23.2-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../012-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../013-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../014-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../015-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../016-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../017-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... 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Unpacking libgd-perl (2.83-1+b1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../184-libio-pty-perl_1.20-1+b4_amd64.deb ... Unpacking libio-pty-perl (1:1.20-1+b4) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../185-libipc-run-perl_20250809.0-1_all.deb ... Unpacking libipc-run-perl (20250809.0-1) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../186-libxml-twig-perl_1%3a3.54-1_all.deb ... Unpacking libxml-twig-perl (1:3.54-1) ... Selecting previously unselected package libxml-xpath-perl. Preparing to unpack .../187-libxml-xpath-perl_1.48-1_all.deb ... Unpacking libxml-xpath-perl (1.48-1) ... Selecting previously unselected package libgraphviz-perl. Preparing to unpack .../188-libgraphviz-perl_2.24-1_all.deb ... Unpacking libgraphviz-perl (2.24-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../189-libyaml-perl_1.31-1_all.deb ... 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Selecting previously unselected package libtemplate-perl. Preparing to unpack .../205-libtemplate-perl_3.102-1+b1_amd64.deb ... Unpacking libtemplate-perl (3.102-1+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../206-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../207-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../208-libxml-sax-perl_1.02+dfsg-4_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-4) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../209-libxml-libxml-perl_2.0207+dfsg+really+2.0134-6+b2_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b2) ... Selecting previously unselected package libxslt1.1:amd64. 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Setting up libaom3:amd64 (3.13.1-2) ... Setting up libuniversal-moniker-perl (0.08-10) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libdatrie1:amd64 (0.2.13-4) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.15.1+dfsg-0.4) ... Setting up libio-stringy-perl (2.113-2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libheap-perl (0.80-5) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up liblab-gamut1:amd64 (2.42.4-3+b1) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libtry-tiny-perl (0.32-1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.2-1) ... Setting up m4 (1.4.20-2) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libabsl20240722:amd64 (20240722.0-4) ... Setting up libyaml-perl (1.31-1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.194-1) ... Setting up libmodule-build-perl (0.423400-3) ... Setting up libkrb5support0:amd64 (1.22.1-2) ... Setting up libfreezethaw-perl (0.5001-3) ... Setting up librav1e0.8:amd64 (0.8.1-6) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libglib2.0-0t64:amd64 (2.86.2-1) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libset-object-perl (1.43-1+b1) ... Setting up liblog-log4perl-perl (1.57-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libpathplan4:amd64 (2.42.4-3+b1) ... Setting up libann0 (1.1.2+doc-9+b1) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.2-1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b3) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libipc-run-perl (20250809.0-1) ... Setting up libk5crypto3:amd64 (1.22.1-2) ... Setting up libltdl7:amd64 (2.5.4-7) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libexporter-lite-perl (0.09-2) ... Setting up libsub-name-perl:amd64 (0.28-1+b1) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libparse-recdescent-perl (1.967015+dfsg-4) ... Setting up libclass-trigger-perl (0.15-2) ... Setting up libdav1d7:amd64 (1.5.2-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libxslt1.1:amd64 (1.1.43-0.3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libcarp-clan-perl (6.08-2) ... Setting up netbase (6.5) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2+b1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006009-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b6) ... Setting up libcdt5:amd64 (2.42.4-3+b1) ... Setting up libkrb5-3:amd64 (1.22.1-2) ... Setting up libcgraph6:amd64 (2.42.4-3+b1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up libclass-accessor-perl (0.51-2) ... Setting up libde265-0:amd64 (1.0.16-1) ... Setting up openssl (3.5.4-1) ... Setting up libyuv0:amd64 (0.0.1919.20250919-1) ... Setting up liburi-perl (5.34-2) ... Setting up libappconfig-perl (1.71-2.3) ... Setting up libdbi-perl:amd64 (1.647-1+b1) ... Setting up libclass-makemethods-perl (1.01-7) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up automake (1:1.18.1-3) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libavif16:amd64 (1.3.0-1+b1) ... Setting up gettext (0.23.2-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxpm4:amd64 (1:3.5.17-1+b3) ... Setting up libdbix-dbschema-perl (0.47-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.72-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libnet-http-perl (6.24-1) ... Setting up libclass-accessor-chained-perl (0.01.1~debian-5) ... Setting up libexception-class-perl (1.45-1) ... Setting up libgraph-perl (1:0.9735-1) ... Setting up libdevel-callchecker-perl:amd64 (0.009-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libdbix-contextualfetch-perl (1.03-5) ... Setting up libthai0:amd64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libima-dbi-perl (0.35-3) ... Setting up libtest-exception-perl (0.43-3) ... Setting up libdata-page-perl (2.03-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ... Setting up ucf (3.0052) ... Setting up libtemplate-perl (3.102-1+b1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libgvpr2:amd64 (2.42.4-3+b1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up libclass-dbi-perl (3.0.17-5) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libio-socket-ssl-perl (2.095-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b5) ... Setting up libpango-1.0-0:amd64 (1.56.3-2) ... Setting up libcgi-pm-perl (4.71-1) ... Setting up libpq5:amd64 (18.1-1+b1) ... Setting up libdbd-pg-perl (3.18.0-2+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up libcgi-session-perl (4.48-4) ... Setting up libxt6t64:amd64 (1:1.2.1-1.3) ... Setting up libclass-dbi-pager-perl (0.08-6) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-6+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libpangoft2-1.0-0:amd64 (1.56.3-2) ... Setting up libpangocairo-1.0-0:amd64 (1.56.3-2) ... Setting up bioperl (1.7.8-2) ... Setting up libclass-dbi-pg-perl (0.09-6) ... Setting up libxmu6:amd64 (2:1.1.3-3+b4) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.28) ... Setting up libxaw7:amd64 (2:1.0.16-1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libxml-libxslt-perl:amd64 (2.003000-3+b2) ... Setting up libpackage-variant-perl (1.003002-2) ... Setting up libsql-translator-perl (1.66-1) ... Setting up libheif-plugin-dav1d:amd64 (1.20.2-2+b1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libheif-plugin-libde265:amd64 (1.20.2-2+b1) ... Setting up libwww-perl (6.81-1) ... Setting up libheif1:amd64 (1.20.2-2+b1) ... Setting up libdigest-md5-file-perl (0.08-2) ... Setting up libgd3:amd64 (2.3.3-13) ... Setting up libgvc6 (2.42.4-3+b1) ... Setting up graphviz (2.42.4-3+b1) ... Setting up libxml-parser-perl (2.47-1+b4) ... Setting up libxml-twig-perl (1:3.54-1) ... Setting up libxml-xpath-perl (1.48-1) ... Setting up libgd-perl (2.83-1+b1) ... Setting up libxml-perl (0.08-4) ... Setting up libgraphviz-perl (2.24-1) ... Setting up libdbix-dbstag-perl (0.12-4) ... Setting up libgo-perl (0.15-10) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Thu, 20 Nov 2025 05:11:01 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Thu, 20 Nov 2025 05:11:01 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.16.5+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.16.5-1 (2025-09-05) amd64 (x86_64) Toolchain package versions: binutils_2.45-8 dpkg-dev_1.22.21 g++-14_14.3.0-10 g++-15_15.2.0-8 gcc-14_14.3.0-10 gcc-15_15.2.0-8 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-10 libstdc++-15-dev_15.2.0-8 libstdc++6_15.2.0-8 linux-libc-dev_6.17.8-1 Package versions: adduser_3.153 apt_3.1.12 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45-8 binutils-common_2.45-8 binutils-gold_2.44-3 binutils-gold-x86-64-linux-gnu_2.44-3 binutils-x86-64-linux-gnu_2.45-8 bioperl_1.7.8-2 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-14_14.3.0-10 cpp-14-x86-64-linux-gnu_14.3.0-10 cpp-15_15.2.0-8 cpp-15-x86-64-linux-gnu_15.2.0-8 cpp-x86-64-linux-gnu_4:15.2.0-4 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 dirmngr_2.4.8-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 fontconfig_2.15.0-2.4 fontconfig-config_2.15.0-2.4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-14_14.3.0-10 g++-14-x86-64-linux-gnu_14.3.0-10 g++-15_15.2.0-8 g++-15-x86-64-linux-gnu_15.2.0-8 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 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+------------------------------------------------------------------------------+ | Build Thu, 20 Nov 2025 05:11:01 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libchado-perl Binary: libchado-perl, chado-utils Architecture: all Version: 1.31-7 Maintainer: Debian Med Packaging Team Uploaders: Scott Cain , Steffen Moeller , Olivier Sallou , Andreas Tille Homepage: http://gmod.org/wiki/Chado Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libchado-perl Vcs-Git: https://salsa.debian.org/med-team/libchado-perl.git Build-Depends: debhelper-compat (= 13), libmodule-build-perl Build-Depends-Indep: perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl Package-List: chado-utils deb perl optional arch=all libchado-perl deb perl optional arch=all Checksums-Sha1: 47de881786d4f1a86264ca9ce9ad5d05650d7aa9 5051094 libchado-perl_1.31.orig.tar.gz a0a74e7d6f3b81dd31b7e12138cf361f5339221e 15232 libchado-perl_1.31-7.debian.tar.xz Checksums-Sha256: 75eb45e681f4cdb41884cccbf62828604e4e206b821f90c7ed155d809bb4ad7a 5051094 libchado-perl_1.31.orig.tar.gz 40614942c830d56008eeafb81467a6d2dda8b93cc6f40ede06d36c1ab942386f 15232 libchado-perl_1.31-7.debian.tar.xz Files: a4748b03324185eea185b2391b94e36a 5051094 libchado-perl_1.31.orig.tar.gz 60cfce966f577081aaa969604727397c 15232 libchado-perl_1.31-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmkeNLoACgkQQc5/C58b izIkagf+Pbso+cN513Po0EH9VLgYXy33EN/FWnZMjYwNJA0bbQ++svdGfVUJOtPy tUbuKT8n4TtmktbvPfXyWL/Jb7cqsxDm/tDIkkZ3QB1sk0ASb1vHm+fC5tiLJkWD ZEOj2m47c5Zn5DzXtN4ngA1Wm2hDQwuWCIFo2w5XOezfWEFBD5IWIbMuu2DizyHr zYRLJnHN1hjXDrVEJlBtfwKC+JNyPM693M79EikDfJRBId9VKsIxwUsEuG7xDgHE Rnzj1E8vIrvqcKtO+21VzJEp6u8sunV93oGBXiNEnk23T3ehOnD6QLnXjIGyUbQP KYAbBMdHWoClzndjBPkqAWRhgcy3tA== =ybZd -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libchado-perl_1.31-7.dsc: no acceptable signature found dpkg-source: info: extracting libchado-perl in /build/libchado-perl-wr5mAK/libchado-perl-1.31 dpkg-source: info: unpacking libchado-perl_1.31.orig.tar.gz dpkg-source: info: unpacking libchado-perl_1.31-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_headers dpkg-source: info: applying force_SIMPLE dpkg-source: info: applying fix_spelling_manpage dpkg-source: info: applying fix_manpages dpkg-source: info: applying setBinPathForBuilder dpkg-source: info: applying remove_pl_extension.patch dpkg-source: info: applying 0001-Sort-generated-build.conf-for-reproducibility.patch dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Thu, 20 Nov 2025 05:11:02 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libchado-perl_1.31-7 perl-5.42-throwaway amd64 --------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libchado-perl_1.31-7 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libchado-perl-wr5mAK/libchado-perl-1.31 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-6612fa48-f11f-4203-8dd4-37bfa9aac9c4 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libchado-perl dpkg-buildpackage: info: source version 1.31-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=perl_makemaker dh_auto_clean -O--buildsystem=perl_makemaker dh_autoreconf_clean -O--buildsystem=perl_makemaker dh_clean -O--buildsystem=perl_makemaker dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libchado-perl using existing ./libchado-perl_1.31.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libchado-perl in libchado-perl_1.31-7.debian.tar.xz dpkg-source: info: building libchado-perl in libchado-perl_1.31-7.dsc debian/rules binary dh binary --buildsystem=perl_makemaker dh_update_autotools_config -O--buildsystem=perl_makemaker dh_autoreconf -O--buildsystem=perl_makemaker debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' perl Makefile.PL INSTALL_BASE=/usr DBNAME=gmod-chado DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 GMOD_ROOT=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado DBDRIVER=PostgreSQL RECONFIGURE=1 SIMPLE=Y LOCAL_TMP=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/tmp Building with the following database options: GMOD_ROOT=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado DBDRIVER=PostgreSQL DBNAME=gmod-chado DBUSER=chado DBPASS=chado DBHOST=localhost DBPORT=5432 SCHEMA= LOCAL_TMP=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/tmp DBORGANISM= DEFAULT= VERSION=1.31 Extracting /build/libchado-perl-wr5mAK/libchado-perl-1.31/bin/../lib/Bio/Chado/AutoDBI.pm (with variable substitutions) initializing load scripts... Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Chado' version '1.31' Building Chado Checking if your kit is complete... Looks good Warning: prerequisite Bio::Chado::Schema 0 not found. Generating a Unix-style Makefile Writing Makefile for chado Writing MYMETA.yml and MYMETA.json -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- Makefile written. Now you should do the following, in order: 1. make (creates necessary build files) 2. sudo make install (creates $GMOD_ROOT and subdirectories) -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* STEP 3 WILL DELETE ANY DATA IN A DATABASE WITH THE DATABASE NAME YOU PROVIDED! -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*WARNING-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-* 3a. make load_schema (loads SQL schema into database) or 3b. make update (update an old Chado schema and stop here) 4. make prepdb (loads basic data) 5. make ontologies (loads data for various ontologies) Optional Targets: make rm_locks (removes ontology lock files, allowing installation of ontologies on successive builds of the database without removing the ontology files altogether) make clean (remove build related files and ontology tmp dir) make instructions (at any moment display these instructions) -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_auto_build -O--buildsystem=perl_makemaker make -j2 make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) Skip blib/lib/Bio/GMOD/Config.pm (unchanged) Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Load.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) Skip blib/lib/Bio/Chado/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) Skip blib/lib/Bio/Chado/Builder.pm (unchanged) Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl Extracting conf_install.pl (with variable substitutions) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/src_install.PLS install_util/src_install.pl Extracting src_install.pl (with variable substitutions) cp bin/gmod_apollo_triggers.pl blib/script/gmod_apollo_triggers.pl cp bin/gmod_add_organism.pl blib/script/gmod_add_organism.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_apollo_triggers.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl cp load/bin/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl cp bin/gmod_chado_properties.pl blib/script/gmod_chado_properties.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_chado_properties.pl cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl cp bin/gmod_fasta2gff3.pl blib/script/gmod_fasta2gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fasta2gff3.pl cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_load_cvterms.pl cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl Manifying 12 pod documents Manifying 26 pod documents make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' echo "Skipping tests to avoid db access" Skipping tests to avoid db access make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=perl_makemaker dh_prep -O--buildsystem=perl_makemaker dh_installdirs -O--buildsystem=perl_makemaker dh_auto_install -O--buildsystem=perl_makemaker make -j2 install DESTDIR=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' "/usr/bin/perl" "/build/libchado-perl-wr5mAK/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31' "/usr/bin/perl" "/build/libchado-perl-wr5mAK/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' Manifying 12 pod documents Manifying 26 pod documents Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/addcascades Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl Installing /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl Appending installation info to /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/tmp/usr/lib/perl5/x86_64-linux-gnu-thread-multi/perllocal.pod make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' debian/rules override_dh_install make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_install -O--buildsystem=perl_makemaker rm -f debian/libchado-perl/usr/share/gmod/chado/load/etc/load.conf sed -i 's/SQLFILE=\/.*\/libchado-perl/SQLFILE=/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod-chado.conf sed -i 's/TMP=\/.*\/tmp/CONF=\/tmp/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf sed -i 's/CONF=.*\/conf/CONF=\/etc\/gmod/' debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf mv /build/libchado-perl-wr5mAK/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado/conf/* debian/libchado-perl/etc/gmod/ # Give exexution rights to perl scripts find debian/libchado-perl/ -name *.pl | xargs chmod 755 find debian/libchado-perl/ -name *.tmpl | xargs chmod 644 find debian/libchado-perl/ -name *.pm | xargs chmod 644 find debian/libchado-perl/ -name *.pod | xargs rm -f find debian/libchado-perl/ -name .packlist | xargs rm -f find debian/libchado-perl/ -name "*.sql" | xargs chmod a-x chmod 755 debian/libchado-perl/usr/share/gmod/chado/soi/t/t_soi_parse_intersect chmod 755 debian/libchado-perl/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl mv debian/tmp/usr/bin/test* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/gmod_chado* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/config* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/Auto* debian/libchado-perl/usr/share/gmod/chado/bin/ mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/ mv debian/tmp/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/ rm -rf debian/libchado-perl/usr/lib/perl5 mv debian/tmp/usr/man/man3 debian/libchado-perl/usr/share/man mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man cp debian/testdb.pl debian/libchado-perl/usr/share/gmod/chado/bin/ rm -rf debian/libchado-perl/usr/share/perl5/x86_64-linux-gnu-thread-multi # Needed for runtime configure rm -rf debian/libchado-perl/usr/share/gmod/chado/lib rm -rf debian/libchado-perl/usr/bin rm -rf debian/libchado-perl/usr/lib rm -rf debian/libchado-perl/usr/share/gmod/chado/load/logs rm -rf debian/libchado-perl/usr/share/gmod/chado/tmp # Remove not required man pages for user (also contains pod2man errors and missing what-is) rm -rf debian/libchado-perl/usr/share/man # Fix perl interpreter path for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' debian/rules override_dh_installdocs make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_installdocs # remove installation doc find debian -name "INSTALL.Chado*" -delete make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_installchangelogs -O--buildsystem=perl_makemaker dh_installexamples -O--buildsystem=perl_makemaker dh_installman -O--buildsystem=perl_makemaker dh_installsystemduser -O--buildsystem=perl_makemaker dh_lintian -O--buildsystem=perl_makemaker dh_perl -O--buildsystem=perl_makemaker dh_link -O--buildsystem=perl_makemaker dh_strip_nondeterminism -O--buildsystem=perl_makemaker dh_compress -O--buildsystem=perl_makemaker debian/rules override_dh_fixperms make[1]: Entering directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_fixperms chmod 644 debian/libchado-perl/etc/gmod/gmod-chado.conf find debian -name create_so_bridge_command -exec chmod 644 \{\} \; find debian -name Skip_tables.pm -exec chmod 644 \{\} \; find debian -name "*.tt2" -exec chmod 644 \{\} \; find debian -name "*.tmpl" -exec chmod 644 \{\} \; make[1]: Leaving directory '/build/libchado-perl-wr5mAK/libchado-perl-1.31' dh_missing -O--buildsystem=perl_makemaker dh_installdeb -O--buildsystem=perl_makemaker dh_gencontrol -O--buildsystem=perl_makemaker dh_md5sums -O--buildsystem=perl_makemaker dh_builddeb -O--buildsystem=perl_makemaker dpkg-deb: building package 'libchado-perl' in '../libchado-perl_1.31-7_all.deb'. dpkg-deb: building package 'chado-utils' in '../chado-utils_1.31-7_all.deb'. dpkg-genbuildinfo -O../libchado-perl_1.31-7_amd64.buildinfo dpkg-genchanges -O../libchado-perl_1.31-7_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-11-20T05:11:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Thu, 20 Nov 2025 05:11:26 +0000 | +------------------------------------------------------------------------------+ libchado-perl_1.31-7_amd64.changes: ----------------------------------- Format: 1.8 Date: Wed, 19 Nov 2025 22:20:00 +0100 Source: libchado-perl Binary: chado-utils libchado-perl Architecture: source all Version: 1.31-7 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: chado-utils - tools to add/extract data from Chado libchado-perl - database schema and tools for genomic data Closes: 1047661 1049705 Changes: libchado-perl (1.31-7) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * Packaging update * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Trim trailing whitespace. * Move libmodule-build-perl from Build-Depends-Indep to Build-Depends. * Set upstream metadata fields: Archive, Bug-Database. . [ Olivier Sallou ] * Fix lintian overrides. . [ Alexandre Detiste ] * d/README.source: Do not mention quilt, it's the default. . [ Santiago Vila ] * Fix clean target. Closes: #1047661, #1049705. * d/control: Drop "Rules-Requires-Root: no" (default). * d/control: Drop "Priority: optional" (default). * d/control: Update standards-version. * d/salsa-ci.yml: Use the simplified version. * d/salsa-ci.yml: Temporarily allow autopkgtest job to fail. Checksums-Sha1: 7d6daceacf7b6771cc139db0c7eb767a1a9502b8 1640 libchado-perl_1.31-7.dsc e7c706092e3c9c0cf62cd816852153c9a9972f14 15248 libchado-perl_1.31-7.debian.tar.xz cc2478c1b23b05ecb15092513fe5295f8bb9c21a 130520 chado-utils_1.31-7_all.deb c9b70bb887c0d9088ca4ae477bc12572e9451135 2222560 libchado-perl_1.31-7_all.deb e8d6efeac1d0d82405ddbedf5216903a1af258a4 11279 libchado-perl_1.31-7_amd64.buildinfo Checksums-Sha256: 4b084a23d506417d21e38842f9031db0512d9d4556cff69d1bd8c9685ceae0e3 1640 libchado-perl_1.31-7.dsc 827aedf2db5602ad399fb9a0acbc5e83d74235e53f8b7e91fb0556450f19b655 15248 libchado-perl_1.31-7.debian.tar.xz 360ba785215aa4a38deffefc08d898f1b0585b5be516ac4ebe260bec66cf7995 130520 chado-utils_1.31-7_all.deb 412b1058ae5790edb48a9a64de687c8582ca468219177bc5b426c308615ba996 2222560 libchado-perl_1.31-7_all.deb d99570700f6a211d8b187e8d8ed1413ba2c801ecb450f886db93e1966881468b 11279 libchado-perl_1.31-7_amd64.buildinfo Files: 0ce3743ccaf9dcaeb8a8ec3ed0c6a41f 1640 perl optional libchado-perl_1.31-7.dsc cc537ea9d49c3c5e6bafe7c9142a5785 15248 perl optional libchado-perl_1.31-7.debian.tar.xz f9c54855f694013a6d21e4d0f9f8643e 130520 perl optional chado-utils_1.31-7_all.deb bb1dea808ef8b7ec81aab3f0a78a0b89 2222560 perl optional libchado-perl_1.31-7_all.deb 8c06237f357d4ef93854c59378b96cf1 11279 perl optional libchado-perl_1.31-7_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Thu, 20 Nov 2025 05:11:26 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: libchado-perl Binary: chado-utils libchado-perl Architecture: all source Version: 1.31-7 Checksums-Md5: 0ce3743ccaf9dcaeb8a8ec3ed0c6a41f 1640 libchado-perl_1.31-7.dsc f9c54855f694013a6d21e4d0f9f8643e 130520 chado-utils_1.31-7_all.deb bb1dea808ef8b7ec81aab3f0a78a0b89 2222560 libchado-perl_1.31-7_all.deb Checksums-Sha1: 7d6daceacf7b6771cc139db0c7eb767a1a9502b8 1640 libchado-perl_1.31-7.dsc cc2478c1b23b05ecb15092513fe5295f8bb9c21a 130520 chado-utils_1.31-7_all.deb c9b70bb887c0d9088ca4ae477bc12572e9451135 2222560 libchado-perl_1.31-7_all.deb Checksums-Sha256: 4b084a23d506417d21e38842f9031db0512d9d4556cff69d1bd8c9685ceae0e3 1640 libchado-perl_1.31-7.dsc 360ba785215aa4a38deffefc08d898f1b0585b5be516ac4ebe260bec66cf7995 130520 chado-utils_1.31-7_all.deb 412b1058ae5790edb48a9a64de687c8582ca468219177bc5b426c308615ba996 2222560 libchado-perl_1.31-7_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 20 Nov 2025 05:11:26 +0000 Build-Path: /build/libchado-perl-wr5mAK/libchado-perl-1.31 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.18.1-3), autopoint (= 0.23.2-1), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.8), bash (= 5.3-1), binutils (= 2.45-8), binutils-common (= 2.45-8), binutils-x86-64-linux-gnu (= 2.45-8), bioperl (= 1.7.8-2), bsdextrautils (= 2.41.2-4), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-14 (= 14.3.0-10), cpp-14-x86-64-linux-gnu (= 14.3.0-10), cpp-15 (= 15.2.0-8), cpp-15-x86-64-linux-gnu (= 15.2.0-8), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig (= 2.15.0-2.4), fontconfig-config (= 2.15.0-2.4), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-8), g++-15-x86-64-linux-gnu (= 15.2.0-8), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-14 (= 14.3.0-10), gcc-14-base (= 14.3.0-10), gcc-14-x86-64-linux-gnu (= 14.3.0-10), gcc-15 (= 15.2.0-8), gcc-15-base (= 15.2.0-8), gcc-15-x86-64-linux-gnu (= 15.2.0-8), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.2-1), gettext-base (= 0.23.2-1), graphviz (= 2.42.4-3+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libabsl20240722 (= 20240722.0-4), libacl1 (= 2.3.2-2+b1), libalgorithm-diff-perl (= 1.201-1), libann0 (= 1.1.2+doc-9+b1), libaom3 (= 3.13.1-2), libappconfig-perl (= 1.71-2.3), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-8), libatomic1 (= 15.2.0-8), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libavif16 (= 1.3.0-1+b1), libb-hooks-op-check-perl (= 0.22-3+b3), libbinutils (= 2.45-8), libbio-perl-perl (= 1.7.8-2), libblkid1 (= 2.41.2-4), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcairo2 (= 1.18.4-1+b1), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcapture-tiny-perl (= 0.50-1), libcarp-clan-perl (= 6.08-2), libcc1-0 (= 15.2.0-8), libcdt5 (= 2.42.4-3+b1), libcgi-pm-perl (= 4.71-1), libcgi-session-perl (= 4.48-4), libcgraph6 (= 2.42.4-3+b1), libclass-accessor-chained-perl (= 0.01.1~debian-5), libclass-accessor-perl (= 0.51-2), libclass-data-inheritable-perl (= 0.10-1), libclass-dbi-pager-perl (= 0.08-6), libclass-dbi-perl (= 3.0.17-5), libclass-dbi-pg-perl (= 0.09-6), libclass-inspector-perl (= 1.36-3), libclass-makemethods-perl (= 1.01-7), libclass-method-modifiers-perl (= 2.15-1), libclass-trigger-perl (= 0.15-2), libclass-xsaccessor-perl (= 1.19-4+b6), libclone-perl (= 0.47-1+b2), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.5.1-1), libcrypt1 (= 1:4.5.1-1), libctf-nobfd0 (= 2.45-8), libctf0 (= 2.45-8), libdata-page-perl (= 2.03-1), libdata-stag-perl (= 0.14-3), libdatrie1 (= 0.2.13-4), libdav1d7 (= 1.5.2-1), libdb5.3t64 (= 5.3.28+dfsg2-10), libdbd-pg-perl (= 3.18.0-2+b1), libdbi-perl (= 1.647-1+b1), libdbix-contextualfetch-perl (= 1.03-5), libdbix-dbschema-perl (= 0.47-1), libdbix-dbstag-perl (= 0.12-4), libde265-0 (= 1.0.16-1), libdebconfclient0 (= 0.281), libdebhelper-perl (= 13.28), libdeflate0 (= 1.23-2), libdevel-callchecker-perl (= 0.009-2+b1), libdevel-stacktrace-perl (= 2.0500-1), libdigest-md5-file-perl (= 0.08-2), libdpkg-perl (= 1.22.21), libdynaloader-functions-perl (= 0.004-2), libelf1t64 (= 0.194-1), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libexpat1 (= 2.7.3-1), libexporter-lite-perl (= 0.09-2), libffi8 (= 3.5.2-2), libfile-listing-perl (= 6.16-1), libfile-sharedir-perl (= 1.118-3), libfile-stripnondeterminism-perl (= 1.15.0-1), libfontconfig1 (= 2.15.0-2.4), libfreetype6 (= 2.13.3+dfsg-1), libfreezethaw-perl (= 0.5001-3), libfribidi0 (= 1.0.16-3), libgav1-1 (= 0.19.0-3+b1), libgcc-14-dev (= 14.3.0-10), libgcc-15-dev (= 15.2.0-8), libgcc-s1 (= 15.2.0-8), libgcrypt20 (= 1.11.2-3), libgd-perl (= 2.83-1+b1), libgd3 (= 2.3.3-13), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libglib2.0-0t64 (= 2.86.2-1), libgmp10 (= 2:6.3.0+dfsg-5), libgo-perl (= 0.15-10), libgomp1 (= 15.2.0-8), libgpg-error0 (= 1.56-2), libgprofng0 (= 2.45-8), libgraph-perl (= 1:0.9735-1), libgraphite2-3 (= 1.3.14-11), libgraphviz-perl (= 2.24-1), libgssapi-krb5-2 (= 1.22.1-2), libgts-0.7-5t64 (= 0.7.6+darcs121130-5.2+b1), libgvc6 (= 2.42.4-3+b1), libgvpr2 (= 2.42.4-3+b1), libharfbuzz0b (= 12.1.0-1), libheap-perl (= 0.80-5), libheif-plugin-dav1d (= 1.20.2-2+b1), libheif-plugin-libde265 (= 1.20.2-2+b1), libheif1 (= 1.20.2-2+b1), libhtml-parser-perl (= 3.83-1+b3), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 7.01-1), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 15.2.0-8), libice6 (= 2:1.1.1-1), libima-dbi-perl (= 0.35-3), libimagequant0 (= 4.4.0-3), libimport-into-perl (= 1.002005-2), libio-html-perl (= 1.004-3), libio-pty-perl (= 1:1.20-1+b4), libio-socket-ssl-perl (= 2.095-1), libio-string-perl (= 1.08-4), libio-stringy-perl (= 2.113-2), libipc-run-perl (= 20250809.0-1), libisl23 (= 0.27-1), libitm1 (= 15.2.0-8), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libk5crypto3 (= 1.22.1-2), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.22.1-2), libkrb5support0 (= 1.22.1-2), liblab-gamut1 (= 2.42.4-3+b1), libldap2 (= 2.6.10+dfsg-1+b1), liblerc4 (= 4.0.0+ds-5), liblog-log4perl-perl (= 1.57-1), liblsan0 (= 15.2.0-8), libltdl7 (= 2.5.4-7), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.8.1-2), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmodule-build-perl (= 0.423400-3), libmodule-runtime-perl (= 0.018-1), libmoo-perl (= 2.005005-1), libmount1 (= 2.41.2-4), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnet-http-perl (= 6.24-1), libnet-ssleay-perl (= 1.94-3+b1), libpackage-variant-perl (= 1.003002-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpango-1.0-0 (= 1.56.3-2), libpangocairo-1.0-0 (= 1.56.3-2), libpangoft2-1.0-0 (= 1.56.3-2), libparams-classify-perl (= 0.015-2+b5), libparse-recdescent-perl (= 1.967015+dfsg-4), libpathplan4 (= 2.42.4-3+b1), libpcre2-8-0 (= 10.46-1), libperl5.42 (= 5.42.0-3), libpipeline1 (= 1.5.8-1), libpixman-1-0 (= 0.46.4-1), libpng16-16t64 (= 1.6.50-1), libpq5 (= 18.1-1+b1), libproc2-0 (= 2:4.0.4-9), libquadmath0 (= 15.2.0-8), librav1e0.8 (= 0.8.1-6), librole-tiny-perl (= 2.002004-1), libsasl2-2 (= 2.1.28+dfsg1-10), libsasl2-modules-db (= 2.1.28+dfsg1-10), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.9-2), libset-object-perl (= 1.43-1+b1), libsframe2 (= 2.45-8), libsharpyuv0 (= 1.5.0-0.1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41.2-4), libsql-translator-perl (= 1.66-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-8), libstdc++6 (= 15.2.0-8), libstrictures-perl (= 2.000006-1), libsub-name-perl (= 0.28-1+b1), libsub-quote-perl (= 2.006009-1), libsub-uplevel-perl (= 0.2800-3), libsvtav1enc2 (= 2.3.0+dfsg-1), libsystemd0 (= 259~rc1-1), libtemplate-perl (= 3.102-1+b1), libtest-deep-perl (= 1.205-1), libtest-differences-perl (= 0.72-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-charwidth-perl (= 0.04-11+b5), libtext-diff-perl (= 1.45-2), libtext-wrapi18n-perl (= 0.06-10), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2+b1), libtiff6 (= 4.7.1-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-7), libtry-tiny-perl (= 0.32-1), libtsan2 (= 15.2.0-8), libubsan1 (= 15.2.0-8), libuchardet0 (= 0.0.8-2), libudev1 (= 259~rc1-1), libunistring5 (= 1.3-2), libuniversal-moniker-perl (= 0.08-10), liburi-perl (= 5.34-2), libuuid1 (= 2.41.2-4), libwebp7 (= 1.5.0-0.1), libwww-perl (= 6.81-1), libwww-robotrules-perl (= 6.02-1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxaw7 (= 2:1.0.16-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-6+b2), libxml-libxslt-perl (= 2.003000-3+b2), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b4), libxml-perl (= 0.08-4), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-4), libxml-simple-perl (= 2.25-2), libxml-twig-perl (= 1:3.54-1), libxml-xpath-perl (= 1.48-1), libxml2-16 (= 2.15.1+dfsg-0.4), libxmu6 (= 2:1.1.3-3+b4), libxpm4 (= 1:3.5.17-1+b3), libxrender1 (= 1:0.9.12-1), libxslt1.1 (= 1.1.43-0.3), libxt6t64 (= 1:1.2.1-1.3), libyaml-perl (= 1.31-1), libyuv0 (= 0.0.1919.20250919-1), libzstd1 (= 1.5.7+dfsg-2), linux-libc-dev (= 6.17.8-1), m4 (= 1.4.20-2), make (= 4.4.1-3), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.4-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.42.0-3), perl-base (= 5.42.0-3), perl-modules-5.42 (= 5.42.0-3), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.15-6), tar (= 1.35+dfsg-3.1), ucf (= 3.0052), util-linux (= 2.41.2-4), x11-common (= 1:7.7+26), xz-utils (= 5.8.1-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1763587200" +------------------------------------------------------------------------------+ | Package contents Thu, 20 Nov 2025 05:11:26 +0000 | +------------------------------------------------------------------------------+ chado-utils_1.31-7_all.deb -------------------------- new Debian package, version 2.0. size 130520 bytes: control archive=2416 bytes. 838 bytes, 21 lines control 4533 bytes, 57 lines md5sums Package: chado-utils Source: libchado-perl Version: 1.31-7 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 442 Depends: perl:any, libchado-perl Recommends: xsltproc Section: perl Priority: optional Homepage: http://gmod.org/wiki/Chado Description: tools to add/extract data from Chado This package contains several tools that can be used to extract data from Chado database or prepare data before upload. It is a subset above the Chado database schema and libraries. . Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. drwxr-xr-x root/root 0 2025-11-19 21:20 ./ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/doc/chado-utils/ -rw-r--r-- root/root 1037 2025-11-19 21:20 ./usr/share/doc/chado-utils/changelog.Debian.gz -rw-r--r-- root/root 5513 2016-01-21 17:46 ./usr/share/doc/chado-utils/changelog.gz -rw-r--r-- root/root 12380 2025-11-19 19:00 ./usr/share/doc/chado-utils/copyright drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/gmod/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/gmod/chado/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/gmod/chado/bin/ -rwxr-xr-x root/root 1416 2025-11-19 21:20 ./usr/share/gmod/chado/bin/GMODCallHome.pl -rw-r--r-- root/root 264 2025-11-19 21:20 ./usr/share/gmod/chado/bin/Skip_tables.pm -rwxr-xr-x root/root 1862 2025-11-19 21:20 ./usr/share/gmod/chado/bin/addcascades -rwxr-xr-x root/root 9479 2025-11-19 21:20 ./usr/share/gmod/chado/bin/chado-build-schema.pl -rwxr-xr-x root/root 7943 2025-11-19 21:20 ./usr/share/gmod/chado/bin/chado-fix-flybase-instance.pl -rwxr-xr-x root/root 2968 2025-11-19 21:20 ./usr/share/gmod/chado/bin/create-bridge-sql.pl -rwxr-xr-x root/root 24869 2025-11-19 21:20 ./usr/share/gmod/chado/bin/create-so-bridge.pl -rw-r--r-- root/root 3612 2025-11-19 21:20 ./usr/share/gmod/chado/bin/create_so_bridge_command -rw-r--r-- root/root 7762 2025-11-19 21:20 ./usr/share/gmod/chado/bin/dbi.tt2 -rwxr-xr-x root/root 15229 2025-11-19 21:20 ./usr/share/gmod/chado/bin/ddltrans -rwxr-xr-x root/root 1503 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gencode2sql.pl -rwxr-xr-x root/root 3635 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_add_organism.pl -rwxr-xr-x root/root 2937 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_apollo_triggers.pl -rwxr-xr-x root/root 41411 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_bulk_load_gff3.pl -rwxr-xr-x root/root 11439 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_bulk_load_pubmed.pl -rwxr-xr-x root/root 10127 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_bulkfiles.pl -rwxr-xr-x root/root 6869 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_dump_gff3.pl -rwxr-xr-x root/root 2413 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_extract_dbxref_from_gff.pl -rwxr-xr-x root/root 2602 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_fasta2gff3.pl -rwxr-xr-x root/root 53881 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_gff2biomart5.pl -rwxr-xr-x root/root 10318 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_gff3_preprocessor.pl -rwxr-xr-x root/root 30530 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_load_cvterms.pl -rwxr-xr-x root/root 11398 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_make_cvtermpath.pl -rwxr-xr-x root/root 4407 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_make_gff_from_dbxref.pl -rwxr-xr-x root/root 29327 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_materialized_view_tool.pl -rwxr-xr-x root/root 2694 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_sort_gff3.pl -rwxr-xr-x root/root 2447 2025-11-19 21:20 ./usr/share/gmod/chado/bin/gmod_update_chado.pl -rwxr-xr-x root/root 2586 2025-11-19 21:20 ./usr/share/gmod/chado/bin/interactions2SIF.pl -rwxr-xr-x root/root 18676 2025-11-19 21:20 ./usr/share/gmod/chado/bin/load_ncbi_taxonomy.pl -rwxr-xr-x root/root 3158 2025-11-19 21:20 ./usr/share/gmod/chado/bin/load_taxonomy_cvterms.pl -rwxr-xr-x root/root 4877 2025-11-19 21:20 ./usr/share/gmod/chado/bin/make_cvtermpath.pl -rwxr-xr-x root/root 1537 2025-11-19 21:20 ./usr/share/gmod/chado/bin/make_cvtermpath.sh -rwxr-xr-x root/root 562 2025-11-19 21:20 ./usr/share/gmod/chado/bin/make_partial_indexes.pl -rwxr-xr-x root/root 1562 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2cdbi.pl -rwxr-xr-x root/root 1657 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2cdbi_viaTT.pl -rwxr-xr-x root/root 911 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2diagram.pl -rwxr-xr-x root/root 1218 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2graphviz.pl -rwxr-xr-x root/root 970 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2graphviz_svg.pl -rwxr-xr-x root/root 1007 2025-11-19 21:20 ./usr/share/gmod/chado/bin/pg2html.pl -rw-r--r-- root/root 666 2025-11-19 21:20 ./usr/share/gmod/chado/bin/privileges.tmpl -rwxr-xr-x root/root 19748 2025-11-19 21:20 ./usr/share/gmod/chado/bin/ucsc_genes2gff.pl -rwxr-xr-x root/root 726 2025-11-19 21:20 ./usr/share/gmod/chado/bin/ucsc_snp2gff.pl drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/man/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/man/man1/ -rw-r--r-- root/root 1532 2025-11-19 21:20 ./usr/share/man/man1/gmod_add_organism.pl.1p.gz -rw-r--r-- root/root 9245 2025-11-19 21:20 ./usr/share/man/man1/gmod_bulk_load_gff3.pl.1p.gz -rw-r--r-- root/root 1631 2025-11-19 21:20 ./usr/share/man/man1/gmod_bulk_load_pubmed.pl.1p.gz -rw-r--r-- root/root 1401 2025-11-19 21:20 ./usr/share/man/man1/gmod_chado_properties.pl.1p.gz -rw-r--r-- root/root 1573 2025-11-19 21:20 ./usr/share/man/man1/gmod_extract_dbxref_from_gff.pl.1p.gz -rw-r--r-- root/root 1364 2025-11-19 21:20 ./usr/share/man/man1/gmod_fasta2gff3.pl.1p.gz -rw-r--r-- root/root 2072 2025-11-19 21:20 ./usr/share/man/man1/gmod_gff3_preprocessor.pl.1p.gz -rw-r--r-- root/root 2139 2025-11-19 21:20 ./usr/share/man/man1/gmod_load_cvterms.pl.1p.gz -rw-r--r-- root/root 1644 2025-11-19 21:20 ./usr/share/man/man1/gmod_make_cvtermpath.pl.1p.gz -rw-r--r-- root/root 1757 2025-11-19 21:20 ./usr/share/man/man1/gmod_make_gff_from_dbxref.pl.1p.gz -rw-r--r-- root/root 3451 2025-11-19 21:20 ./usr/share/man/man1/gmod_materialized_view_tool.pl.1p.gz -rw-r--r-- root/root 1307 2025-11-19 21:20 ./usr/share/man/man1/gmod_sort_gff3.pl.1p.gz libchado-perl_1.31-7_all.deb ---------------------------- new Debian package, version 2.0. size 2222560 bytes: control archive=10160 bytes. 46 bytes, 2 lines conffiles 1384 bytes, 20 lines control 46053 bytes, 495 lines md5sums 2374 bytes, 77 lines * postinst #!/bin/bash 100 bytes, 13 lines * postrm #!/bin/bash Package: libchado-perl Version: 1.31-7 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 81285 Depends: perl:any, postgresql-client, libbio-chado-schema-perl, libclass-dbi-pg-perl, libxml-libxslt-perl, liblog-log4perl-perl, bioperl, libgo-perl, libdbd-pg-perl, libdbi-perl, libgd-gd2-perl, libdigest-md5-file-perl, libgraph-perl, libdata-stag-perl, libxml-perl, libclass-dbi-perl, libclass-dbi-pager-perl, libxml-simple-perl, libwww-perl, libtemplate-perl, libcgi-session-perl, libsql-translator-perl, libdbix-dbstag-perl, libmodule-build-perl, make Recommends: xsltproc, chado-utils Section: perl Priority: optional Homepage: http://gmod.org/wiki/Chado Description: database schema and tools for genomic data Chado is a relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. 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./usr/share/perl5/Bio/GMOD/DB/Tools/ETA.pm -rw-r--r-- root/root 6867 2025-11-19 21:20 ./usr/share/perl5/Bio/GMOD/Load.pm drwxr-xr-x root/root 0 2025-11-19 21:20 ./usr/share/perl5/Bio/GMOD/Load/ -rw-r--r-- root/root 31945 2025-11-19 21:20 ./usr/share/perl5/Bio/GMOD/Load/GFF.pm -rw-r--r-- root/root 19434 2025-11-19 21:20 ./usr/share/perl5/Bio/GMOD/SeqUtils.pm drwxr-xr-x root/root 0 2025-11-19 21:20 ./var/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./var/log/ drwxr-xr-x root/root 0 2025-11-19 21:20 ./var/log/chado/ +------------------------------------------------------------------------------+ | Post Build Thu, 20 Nov 2025 05:11:27 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Thu, 20 Nov 2025 05:11:27 +0000 | +------------------------------------------------------------------------------+ Purging /build/libchado-perl-wr5mAK Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Thu, 20 Nov 2025 05:11:28 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 135400 Build-Time: 24 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 16 Job: /srv/debomatic/incoming/libchado-perl_1.31-7.dsc Machine Architecture: amd64 Package: libchado-perl Package-Time: 48 Source-Version: 1.31-7 Space: 135400 Status: successful Version: 1.31-7 -------------------------------------------------------------------------------- Finished at 2025-11-20T05:11:26Z Build needed 00:00:48, 135400k disk space