sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | libbio-tools-phylo-paml-perl 1.7.3-4 (amd64) Mon, 18 Aug 2025 00:34:21 +0000 | +==============================================================================+ Package: libbio-tools-phylo-paml-perl Version: 1.7.3-4 Source Version: 1.7.3-4 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 18 Aug 2025 00:34:22 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-phylo-paml-perl_1.7.3-4 perl-5.42-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-tools-phylo-paml-perl_1.7.3-4 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 18 Aug 2025 00:34:22 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 Packages [547 kB] Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Ign:3 http://deb.debian.org/debian unstable InRelease Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Ign:4 http://deb.debian.org/debian sid InRelease Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:7 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Fetched 734 kB in 12s (61.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu init-system-helpers libbinutils libctf-nobfd0 libctf0 libgprofng0 libidn2-0 libldap2 libsframe2 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB/5881 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [194 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.45-4 [810 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.45-4 [89.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.45-4 [157 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.45-4 [1042 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.45-4 [266 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.45-4 [539 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.45-4 [2556 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libsframe2 amd64 2.45-4 [79.5 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Fetched 5687 kB in 0s (89.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.45-4_amd64.deb ... Unpacking libgprofng0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../1-libctf0_2.45-4_amd64.deb ... Unpacking libctf0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../2-libctf-nobfd0_2.45-4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.45-4) over (2.45-3) ... 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Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libbinutils:amd64 (2.45-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libctf0:amd64 (2.45-4) ... Setting up libgprofng0:amd64 (2.45-4) ... Setting up binutils-x86-64-linux-gnu (2.45-4) ... Setting up binutils (2.45-4) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files Mon, 18 Aug 2025 00:34:38 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-tools-phylo-paml-perl_1.7.3-4.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 18 Aug 2025 00:34:38 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ InRelease Get:2 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ Release [609 B] Ign:3 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ Release.gpg Get:4 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ Sources [715 B] Get:5 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ Packages [734 B] Fetched 2058 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfile-sort-perl libfile-stripnondeterminism-perl libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db paml po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl libalgorithm-diff-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbio-perl-run-perl libdata-stag-perl libdebhelper-perl libdevel-checkbin-perl libelf1t64 libfile-sort-perl libfile-stripnondeterminism-perl libio-pty-perl libio-string-perl libipc-run-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db paml po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 15.2 MB/15.2 MB of archives. After this operation, 55.2 MB of additional disk space will be used. Get:1 copy:/build/libbio-tools-phylo-paml-perl-QzIdaI/resolver-sU6PLa/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [896 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 libio-pty-perl amd64 1:1.20-1+b4 [34.5 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:24 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libipc-run-perl all 20231003.0-2 [101 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libfile-sort-perl all 1.01-4 [21.1 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libbio-perl-run-perl all 1.7.3-13 [528 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libdevel-checkbin-perl all 0.04-3 [5228 B] Get:38 http://deb.debian.org/debian unstable/main amd64 paml amd64 4.9j+dfsg-6 [723 kB] Preconfiguring packages ... Fetched 15.2 MB in 0s (146 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14972 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Unpacking libdevel-checkbin-perl (0.04-3) ... Selecting previously unselected package paml. Preparing to unpack .../36-paml_4.9j+dfsg-6_amd64.deb ... Unpacking paml (4.9j+dfsg-6) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../37-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libdevel-checkbin-perl (0.04-3) ... Setting up libio-pty-perl (1:1.20-1+b4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up paml (4.9j+dfsg-6) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libfile-sort-perl (1.01-4) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libbio-perl-run-perl (1.7.3-13) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Mon, 18 Aug 2025 00:34:42 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 18 Aug 2025 00:34:42 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-gold_2.44-2 binutils-gold-x86-64-linux-gnu_2.44-2 binutils-x86-64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 gnupg_2.4.8-2 gnupg-l10n_2.4.8-2 gpg_2.4.8-2 gpg-agent_2.4.8-2 gpgconf_2.4.8-2 gpgsm_2.4.8-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.4 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libassuan9_3.0.2-2 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libbio-perl-perl_1.7.8-1 libbio-perl-run-perl_1.7.3-13 libblkid1_2.41.1-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdevel-checkbin-perl_0.04-3 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-sort-perl_1.01-4 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgcrypt20_1.11.2-2 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgpg-error0_1.55-2 libgprofng0_2.45-4 libhogweed6t64_3.10.1-1 libhwasan0_15.2.0-1 libidn2-0_2.3.8-3 libio-pty-perl_1:1.20-1+b4 libio-string-perl_1.08-4 libipc-run-perl_20231003.0-2 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.1-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_15.2.0-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libperl5.42_5.42.0-1 libpipeline1_1.5.8-1 libquadmath0_15.2.0-1 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsystemd0_258~rc2-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 libuuid1_2.41.1-1 libxml2-16_2.14.5+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.2-1 paml_4.9j+dfsg-6 passwd_1:4.17.4-2 patch_2.8-2 perl_5.42.0-1 perl-base_5.42.0-1 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-1 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 18 Aug 2025 00:34:43 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Architecture: all Version: 1.7.3-4 Maintainer: Debian Perl Group Uploaders: David Miguel Susano Pinto Homepage: https://metacpan.org/release/Bio-Tools-Phylo-PAML Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-phylo-paml-perl Vcs-Git: https://salsa.debian.org/perl-team/modules/packages/libbio-tools-phylo-paml-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl Package-List: libbio-tools-phylo-paml-perl deb science optional arch=all Checksums-Sha1: 4ced4b0905ad258cb119656f84b442bca950487a 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz 234b33e8fc175f177e68c60041fa8a1bdabc5f86 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz Checksums-Sha256: 424dccca82b61e3daf62f52e33de35efdbe1b69644d07015e987671fa7130cb4 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz f88ff3149e7272680b64d89a0d95890eecebb6497a60a74aa2aa842c325ccee1 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz Files: 0030a118c958b93967a470b8bc3e21a0 137819 libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz b4cf89175f37313b9dc0fc1f21c1cc33 2784 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEsjhixBXWVlpOhsvXV5wWDUyeI+gFAmNJdpAACgkQV5wWDUye I+gqLg/+Ku4XXZstK3dvLrd+rN1e3wlK9Fsw1yKcQXRtYcSmKzedT/zsh6b1P2dG fJlzOzE3QJ6taQhe7Z5nsU7tOi7TiqVXHgg/tYWRSfupUcjX8SoHKii4tT9KhcLQ OFV1cxJPQSDJHhhrGxZCL04AkcFacqUrb2tSnIEt9W6TJ0VV1B2gNv7FT+MFqbt4 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list from debian/patches/series dpkg-source: info: applying evolver-program-name.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 18 Aug 2025 00:34:43 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-phylo-paml-perl_1.7.3-4 perl-5.42-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-tools-phylo-paml-perl_1.7.3-4 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-563b7fcd-f00f-4e51-9c30-1e4ad50b3a74 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libbio-tools-phylo-paml-perl dpkg-buildpackage: info: source version 1.7.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Jelmer Vernooij dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-tools-phylo-paml-perl using existing ./libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-tools-phylo-paml-perl in libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz dpkg-source: info: building libbio-tools-phylo-paml-perl in libbio-tools-phylo-paml-perl_1.7.3-4.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Warning: prerequisite Bio::Tools::Run::Alignment::Clustalw 0 not found. Warning: prerequisite Bio::Tools::Run::Alignment::TCoffee 0 not found. Locating bin:basemlg... found at /usr/bin/basemlg. Locating bin:codeml... found at /usr/bin/codeml. Locating bin:paml-evolver... found at /usr/bin/paml-evolver. Locating bin:yn00... found at /usr/bin/yn00. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Tools::Phylo::PAML Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' cp lib/Bio/Tools/Phylo/PAML/ModelResult.pm blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm cp lib/Bio/Tools/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Phylo/PAML/Codeml.pm cp lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm cp lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm cp lib/Bio/Tools/Phylo/PAML/Result.pm blib/lib/Bio/Tools/Phylo/PAML/Result.pm cp lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm cp lib/Bio/Tools/Phylo/PAML.pm blib/lib/Bio/Tools/Phylo/PAML.pm cp lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm cp bin/bp_pairwise_kaks blib/script/bp_pairwise_kaks "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_pairwise_kaks Manifying 1 pod document Manifying 8 pod documents make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..9 ok 1 - Bio/Tools/Phylo/PAML.pm loaded ok ok 2 - Bio/Tools/Phylo/PAML/Codeml.pm loaded ok ok 3 - Bio/Tools/Phylo/PAML/ModelResult.pm loaded ok ok 4 - Bio/Tools/Phylo/PAML/Result.pm loaded ok ok 5 - Bio/Tools/Run/Phylo/PAML/Baseml.pm loaded ok ok 6 - Bio/Tools/Run/Phylo/PAML/Codeml.pm loaded ok ok 7 - Bio/Tools/Run/Phylo/PAML/Evolver.pm loaded ok ok 8 - Bio/Tools/Run/Phylo/PAML/Yn00.pm loaded ok ok 9 # skip bin/bp_pairwise_kaks isn't perl ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/PAML-parser.t .......... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 - node\#8 reconstructed seq ok 163 - ancestral AA ok 164 - ancestral AA ok 165 - derived AA ok 166 - ancestral AA ok 167 - ancestral AA ok 168 - derived AA ok 169 - derived AA ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok 181 ok 182 ok 183 ok 184 ok 185 ok 186 ok 187 ok 188 ok 189 ok 190 ok 191 ok 192 ok 193 ok 194 ok 195 ok 196 ok 197 ok 198 ok 199 ok 200 ok 201 ok 202 ok 203 - codeml 4.3 runmode=-2 ok 204 ok 205 ok 206 ok 207 ok 208 ok 209 ok 210 ok 211 ok 212 ok 213 ok 214 - codeml 4.3 two NSSites models ok 215 ok 216 ok 217 ok 218 ok 219 ok 220 ok 221 ok 222 ok 223 ok 224 ok 225 ok 226 ok 227 ok 228 ok 229 ok 230 ok 231 ok 232 ok 233 ok 234 ok 235 ok 236 ok 237 ok 238 - NEB positively selected sites ok 239 ok 240 ok 241 ok 242 ok 243 ok 244 ok 245 ok 246 ok 247 ok 248 ok 249 ok 250 - bug 3040 ok 251 - bug 3365 ok 252 - bug 3366 ok 253 - bug 3367 ok 254 - bug 3332 ok 255 - bug 3331 1..255 ok t/PAML-run.t ............. ok 1 ok 2 ok 3 - got results ok 4 - got a result ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - got results ok 15 - got a result ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 - got results ok 29 1..29 ok All tests successful. Files=8, Tests=293, 2 wallclock secs ( 0.05 usr 0.00 sys + 1.31 cusr 0.20 csys = 1.56 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-tools-phylo-paml-perl/ make -j2 install DESTDIR=/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' Manifying 1 pod document Manifying 8 pod documents Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man1/bp_pairwise_kaks.1p Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm Installing /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' debian/rules override_dh_install make[1]: Entering directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' dh_install sed -i '1s|^#!/usr/bin/env perl|#!/usr/bin/perl|' /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks make[1]: Leaving directory '/build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-tools-phylo-paml-perl' in '../libbio-tools-phylo-paml-perl_1.7.3-4_all.deb'. dpkg-genbuildinfo -O../libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo dpkg-genchanges -O../libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-08-18T00:34:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 18 Aug 2025 00:34:48 +0000 | +------------------------------------------------------------------------------+ libbio-tools-phylo-paml-perl_1.7.3-4_amd64.changes: --------------------------------------------------- Format: 1.8 Date: Fri, 14 Oct 2022 15:47:06 +0100 Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Architecture: source all Version: 1.7.3-4 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Perl Group Changed-By: Jelmer Vernooij Description: libbio-tools-phylo-paml-perl - Bioperl interface to the PAML suite Changes: libbio-tools-phylo-paml-perl (1.7.3-4) unstable; urgency=medium . [ Debian Janitor ] * Update standards version to 4.5.1, no changes needed. * Remove constraints unnecessary since buster * Update standards version to 4.6.0, no changes needed. Checksums-Sha1: f4655215e4cfa78f8cfcdc41fa598caad678877f 1458 libbio-tools-phylo-paml-perl_1.7.3-4.dsc 348add1c28a28a9032f3f5857069593aa81b5d81 2792 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz 7a61d86bdb60be14c0acf87b1d8f7b3a6d009a37 78788 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb 7f9024d10008f2ac2a5f7d02589387ac092bf7ea 5306 libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo Checksums-Sha256: 2e81ca80d5654b7a7613d07c3638a268f8c963f0c9cf024a69067b758bdfe872 1458 libbio-tools-phylo-paml-perl_1.7.3-4.dsc 51b9ee8c2e40e2315dba3cf2fdf7b7b4b4859c754cc33ac6ab13323593be3514 2792 libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz aae22fe5a6828c1320cd21000ca9e24c3d896bbbadd8ce64fa4ce0d70f7266e0 78788 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb 0579e69aff5e0b7fef7d35eca31aa74f6fcba10b3a62c1c8e628e03ef28482e7 5306 libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo Files: 99dadf3bc609bfc9e252ddde854d1f08 1458 science optional libbio-tools-phylo-paml-perl_1.7.3-4.dsc e6c18223c5c0693148e0bd7ba7305f87 2792 science optional libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz e676b89de3ab74dc1c68ca23b8ab0ef5 78788 science optional libbio-tools-phylo-paml-perl_1.7.3-4_all.deb ddda60c530f9e0e453288c8c0fff1b9d 5306 science optional libbio-tools-phylo-paml-perl_1.7.3-4_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Mon, 18 Aug 2025 00:34:49 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-tools-phylo-paml-perl Binary: libbio-tools-phylo-paml-perl Architecture: all source Version: 1.7.3-4 Checksums-Md5: 99dadf3bc609bfc9e252ddde854d1f08 1458 libbio-tools-phylo-paml-perl_1.7.3-4.dsc e676b89de3ab74dc1c68ca23b8ab0ef5 78788 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Checksums-Sha1: f4655215e4cfa78f8cfcdc41fa598caad678877f 1458 libbio-tools-phylo-paml-perl_1.7.3-4.dsc 7a61d86bdb60be14c0acf87b1d8f7b3a6d009a37 78788 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Checksums-Sha256: 2e81ca80d5654b7a7613d07c3638a268f8c963f0c9cf024a69067b758bdfe872 1458 libbio-tools-phylo-paml-perl_1.7.3-4.dsc aae22fe5a6828c1320cd21000ca9e24c3d896bbbadd8ce64fa4ce0d70f7266e0 78788 libbio-tools-phylo-paml-perl_1.7.3-4_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 18 Aug 2025 00:34:48 +0000 Build-Path: /build/libbio-tools-phylo-paml-perl-QzIdaI/libbio-tools-phylo-paml-perl-1.7.3 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), binutils (= 2.45-4), binutils-common (= 2.45-4), binutils-x86-64-linux-gnu (= 2.45-4), bsdextrautils (= 2.41.1-1), bsdutils (= 1:2.41.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.3.0-5), cpp-14-x86-64-linux-gnu (= 14.3.0-5), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-x86-64-linux-gnu (= 14.3.0-5), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.3.0-5), gcc-14-base (= 14.3.0-5), gcc-14-x86-64-linux-gnu (= 14.3.0-5), gcc-15-base (= 15.2.0-1), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-1), libatomic1 (= 15.2.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.45-4), libbio-perl-perl (= 1.7.8-1), libbio-perl-run-perl (= 1.7.3-13), libblkid1 (= 2.41.1-1), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-4), libctf0 (= 2.45-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.25), libdevel-checkbin-perl (= 0.04-3), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libfile-sort-perl (= 1.01-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.3.0-5), libgcc-s1 (= 15.2.0-1), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 15.2.0-1), libgprofng0 (= 2.45-4), libhwasan0 (= 15.2.0-1), libio-pty-perl (= 1:1.20-1+b4), libio-string-perl (= 1.08-4), libipc-run-perl (= 20231003.0-2), libisl23 (= 0.27-1), libitm1 (= 15.2.0-1), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41.1-1), liblsan0 (= 15.2.0-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.1-1), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.42 (= 5.42.0-1), libpipeline1 (= 1.5.8-1), libquadmath0 (= 15.2.0-1), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-4), libsmartcols1 (= 2.41.1-1), libsqlite3-0 (= 3.46.1-7), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsystemd0 (= 258~rc2-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 15.2.0-1), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 258~rc2-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.1-1), libxml2-16 (= 2.14.5+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.2-1), paml (= 4.9j+dfsg-6), patch (= 2.8-2), perl (= 5.42.0-1), perl-base (= 5.42.0-1), perl-modules-5.42 (= 5.42.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.1-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1665758826" +------------------------------------------------------------------------------+ | Package contents Mon, 18 Aug 2025 00:34:49 +0000 | +------------------------------------------------------------------------------+ libbio-tools-phylo-paml-perl_1.7.3-4_all.deb -------------------------------------------- new Debian package, version 2.0. size 78788 bytes: control archive=1372 bytes. 821 bytes, 19 lines control 1913 bytes, 22 lines md5sums Package: libbio-tools-phylo-paml-perl Version: 1.7.3-4 Architecture: all Maintainer: Debian Perl Group Installed-Size: 276 Depends: perl:any, libbio-perl-perl, libbio-perl-run-perl, libio-string-perl, paml Section: science Priority: optional Homepage: https://metacpan.org/release/Bio-Tools-Phylo-PAML Description: Bioperl interface to the PAML suite This distribution provides a Perl interface to PAML, a suite of programs (baseml, codeml, evolver, and yn00) for phylogenetic analyses of DNA or protein sequences using maximum likelihood. . The Bio::Tools::Run::Phylo::PAML::* modules provide an interface to run the PAML programs while Bio::Tools::Phylo::PAML provides an interface to parse their output files. . 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