sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | libbio-featureio-perl 1.6.905-2 (amd64) Mon, 18 Aug 2025 00:32:40 +0000 | +==============================================================================+ Package: libbio-featureio-perl Version: 1.6.905-2 Source Version: 1.6.905-2 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 18 Aug 2025 00:32:41 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-featureio-perl_1.6.905-2 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-featureio-perl_1.6.905-2 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 18 Aug 2025 00:32:41 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 Packages [547 kB] Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Ign:3 http://deb.debian.org/debian unstable InRelease Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Ign:4 http://deb.debian.org/debian sid InRelease Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:7 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Fetched 734 kB in 12s (60.9 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu init-system-helpers libbinutils libctf-nobfd0 libctf0 libgprofng0 libidn2-0 libldap2 libsframe2 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB/5881 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [194 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.45-4 [810 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.45-4 [89.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.45-4 [157 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.45-4 [1042 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.45-4 [266 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.45-4 [539 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.45-4 [2556 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libsframe2 amd64 2.45-4 [79.5 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Fetched 5687 kB in 0s (120 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.45-4_amd64.deb ... Unpacking libgprofng0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../1-libctf0_2.45-4_amd64.deb ... Unpacking libctf0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../2-libctf-nobfd0_2.45-4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.45-4) over (2.45-3) ... 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Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libbinutils:amd64 (2.45-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libctf0:amd64 (2.45-4) ... Setting up libgprofng0:amd64 (2.45-4) ... Setting up binutils-x86-64-linux-gnu (2.45-4) ... Setting up binutils (2.45-4) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files Mon, 18 Aug 2025 00:32:57 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-featureio-perl_1.6.905-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 18 Aug 2025 00:32:57 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl Filtered Build-Depends: debhelper-compat (= 12), build-essential, libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ InRelease Get:2 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ Release [609 B] Ign:3 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ Release.gpg Get:4 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ Sources [786 B] Get:5 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ Packages [805 B] Fetched 2200 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfile-listing-perl libfile-slurper-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-dom-perl libxml-dom-xpath-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-xpathengine-perl libxml2-16 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libperlio-utf8-strict-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libexpat1 libfile-listing-perl libfile-slurper-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtree-dagnode-perl libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-dom-perl libxml-dom-xpath-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-xpathengine-perl libxml2-16 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 17.3 MB/17.9 MB of archives. After this operation, 60.4 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libclone-perl amd64 0.47-1+b2 [13.9 kB] Get:2 copy:/build/libbio-featureio-perl-FQoonx/resolver-0cLfpr/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:3 file:/srv/reprepro perl-5.42/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [100 kB] Get:4 file:/srv/reprepro perl-5.42/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [341 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get:6 file:/srv/reprepro perl-5.42/main amd64 libxml-parser-perl amd64 2.47-1+b4 [199 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:31 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:44 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libfile-slurper-perl all 0.014-1 [8560 B] Get:51 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:60 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libtree-dagnode-perl all 1.35-1 [62.4 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libxml-perl all 0.08-4 [93.0 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libxml-regexp-perl all 0.04-2 [6916 B] Get:76 http://deb.debian.org/debian unstable/main amd64 libxml-dom-perl all 1.46-2 [152 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libxml-xpathengine-perl all 0.14-2 [33.5 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libxml-dom-xpath-perl all 0.14-4 [9352 B] Preconfiguring packages ... Fetched 17.3 MB in 0s (129 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 14972 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package netbase. Preparing to unpack .../01-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../03-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../04-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.46-5_amd64.deb ... 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Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up netbase (6.5) ... Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.2-1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Setting up libwww-perl (6.78-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libxml-parser-perl (2.47-1+b4) ... Setting up libxml-perl (0.08-4) ... Setting up libxml-dom-perl (1.46-2) ... Setting up libxml-dom-xpath-perl (0.14-4) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Mon, 18 Aug 2025 00:33:05 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 18 Aug 2025 00:33:05 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-gold_2.44-2 binutils-gold-x86-64-linux-gnu_2.44-2 binutils-x86-64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 gnupg_2.4.8-2 gnupg-l10n_2.4.8-2 gpg_2.4.8-2 gpg-agent_2.4.8-2 gpgconf_2.4.8-2 gpgsm_2.4.8-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libalgorithm-diff-perl_1.201-1 libapt-pkg7.0_3.1.4 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libassuan9_3.0.2-2 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libbio-perl-perl_1.7.8-1 libblkid1_2.41.1-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcapture-tiny-perl_0.50-1 libcc1-0_15.2.0-1 libclass-data-inheritable-perl_0.10-1 libclone-perl_0.47-1+b2 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libexpat1_2.7.1-2 libffi8_3.4.8-2 libfile-listing-perl_6.16-1 libfile-slurper-perl_0.014-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgcrypt20_1.11.2-2 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgpg-error0_1.55-2 libgprofng0_2.45-4 libhogweed6t64_3.10.1-1 libhtml-parser-perl_3.83-1+b3 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_15.2.0-1 libidn2-0_2.3.8-3 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.1-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_15.2.0-1 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-3+b1 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libperl5.42_5.42.0-1 libpipeline1_1.5.8-1 libquadmath0_15.2.0-1 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsub-uplevel-perl_0.2800-3 libsystemd0_258~rc2-2 libtasn1-6_4.20.0-2 libtest-deep-perl_1.205-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtree-dagnode-perl_1.35-1 libtry-tiny-perl_0.32-1 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 liburi-perl_5.30-1 libuuid1_2.41.1-1 libwww-perl_6.78-1 libwww-robotrules-perl_6.02-1 libxml-dom-perl_1.46-2 libxml-dom-xpath-perl_0.14-4 libxml-parser-perl_2.47-1+b4 libxml-perl_0.08-4 libxml-regexp-perl_0.04-2 libxml-xpathengine-perl_0.14-2 libxml2-16_2.14.5+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl_3.5.2-1 openssl-provider-legacy_3.5.2-1 passwd_1:4.17.4-2 patch_2.8-2 perl_5.42.0-1 perl-base_5.42.0-1 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-1 perl-openssl-defaults_7+b2 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 18 Aug 2025 00:33:05 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: all Version: 1.6.905-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-FeatureIO Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-featureio-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-featureio-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: libbio-perl-perl, libscalar-list-utils-perl, libtest-simple-perl, libtest-most-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl, perl Package-List: libbio-featureio-perl deb perl optional arch=all Checksums-Sha1: 13fea9d01472288a281cc7251951ee068fb283db 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 45a1b10d1dfc0b8c391e9ecf7d923428eb8b5da1 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Checksums-Sha256: 322e5757b374f2fb90b8f20bdbdc75631f5cb4d122f81a4d35c3a177cf950c7a 54906 libbio-featureio-perl_1.6.905.orig.tar.gz bc047910dd0709363552e88f6323aaaf09be2aba7401fe943b1eba76b94a687f 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz Files: 7e455995c0a9cff706f43b1412dfdb9c 54906 libbio-featureio-perl_1.6.905.orig.tar.gz 5cd2dcb01402b65d4303d5385f2d9954 2044 libbio-featureio-perl_1.6.905-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4cJYwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGyKQ//YgapUIltkS+bplEEt9pkn5R+g6hK7zZY H27PhfFKt6rpYgXXu6BYvJzAVfOZ30SFdqVfrEe/tPj5dtumcxtPKONNUZCasa/p zpEIjKa0MMoO7BdqOpSPh0HaEz1jB6f6bYi/YO1fWq3M3yeRP28F0AXTKgByLeDa zeRwiK3ppthEAxeifXNuF0emGw30XZjsR/I3dUeTKMavx/rlFWPrQwze/EScAodi DeHUcJVCf6++wmqCUjSNKQsHcOUvY4g5FnAAT3FCwE11VyyeYadxEoXyMf6vOqh4 jnrf+blr5hvRiIQy7GZWVrievniro44CZ+XLQlgVY6SfRa2kZ3SfCCrJaKJ03M7p GDiW6U2uEtuVXuMS+i0Js2I5huujFKdzlHf/jPmp3lCe7+KQP9PTKQssca7oIdeo dhTcD3rIRmbBEFnW5BLVLxgMto+9XvA7px9wz1zQF7sbnumFhWCZQc5KFvmSZ1Vh Gfim1TownM9KEfnJ01kGaPXyLLkNmJuVuPTaMUzeHBLQzU935WuhXKLQxKpNdBdZ EGNA3NaH+8NsXK/eMnhcEumdjC+nnzlBauLefPAM7ogb3T+3LH9M3Q16wcchzpMl MKv0fVMG8MC3JiU2/M76DvPsCMYsI109X/1tw+CAxZvzr9QuQ6fPdxpIfs1X0RWw Vu844SjUfIc= =Xt8x -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libbio-featureio-perl_1.6.905-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-featureio-perl in /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905 dpkg-source: info: unpacking libbio-featureio-perl_1.6.905.orig.tar.gz dpkg-source: info: unpacking libbio-featureio-perl_1.6.905-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 18 Aug 2025 00:33:06 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-featureio-perl_1.6.905-2 perl-5.42-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-featureio-perl_1.6.905-2 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-f129d825-0fc1-461c-86d9-cf4ec7bc20f1 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libbio-featureio-perl dpkg-buildpackage: info: source version 1.6.905-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-featureio-perl using existing ./libbio-featureio-perl_1.6.905.orig.tar.gz dpkg-source: info: building libbio-featureio-perl in libbio-featureio-perl_1.6.905-2.debian.tar.xz dpkg-source: info: building libbio-featureio-perl in libbio-featureio-perl_1.6.905-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::FeatureIO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' cp lib/Bio/FeatureIO/vecscreen_simple.pm blib/lib/Bio/FeatureIO/vecscreen_simple.pm cp lib/Bio/FeatureIO/bed.pm blib/lib/Bio/FeatureIO/bed.pm cp lib/Bio/SeqFeature/Annotated.pm blib/lib/Bio/SeqFeature/Annotated.pm cp lib/Bio/FeatureIO/interpro.pm blib/lib/Bio/FeatureIO/interpro.pm cp lib/Bio/FeatureIO/gff.pm blib/lib/Bio/FeatureIO/gff.pm cp lib/Bio/FeatureIO/ptt.pm blib/lib/Bio/FeatureIO/ptt.pm cp lib/Bio/FeatureIO/gtf.pm blib/lib/Bio/FeatureIO/gtf.pm cp lib/Bio/FeatureIO.pm blib/lib/Bio/FeatureIO.pm Manifying 8 pod documents make[1]: Leaving directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/release-SeqFeature/*.t t/00-compile.t .................... 1..8 ok 1 - Bio/FeatureIO.pm loaded ok ok 2 - Bio/FeatureIO/bed.pm loaded ok ok 3 - Bio/FeatureIO/gff.pm loaded ok ok 4 - Bio/FeatureIO/gtf.pm loaded ok ok 5 - Bio/FeatureIO/interpro.pm loaded ok ok 6 - Bio/FeatureIO/ptt.pm loaded ok ok 7 - Bio/FeatureIO/vecscreen_simple.pm loaded ok ok 8 - Bio/SeqFeature/Annotated.pm loaded ok ok t/bed.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 1..7 ok t/FeatureIO.t ..................... ok 1 - use Bio::FeatureIO; ok 2 - use Bio::FeatureIO::gff; ok 3 - use Bio::FeatureIO::ptt; ok 4 - use Bio::FeatureIO::vecscreen_simple; ok 5 - use Bio::SeqFeature::Annotated; 1..5 ok t/gff.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeatureI' ok 8 - An object of class 'Bio::SeqFeature::Annotated' isa 'Bio::SeqFeature::Annotated' ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 not ok 122 # TODO Add clustering groups based on grouping within the file # Failed (TODO) test at t/gff.t line 366. 1..122 ok t/ptt.t ........................... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - ptt file 1..11 ok t/release-mojibake.t .............. skipped: these tests are for release candidate testing t/release-pod-coverage.t .......... skipped: these tests are for release candidate testing t/release-pod-syntax.t ............ skipped: these tests are for release candidate testing t/release-SeqFeature/Annotated.t .. skipped: these tests are for release candidate testing t/vecscreen.t ..................... ok 1 ok 2 - vecscreen_simple gets the correct features 1..2 ok All tests successful. Files=10, Tests=155, 2 wallclock secs ( 0.04 usr 0.00 sys + 1.27 cusr 0.26 csys = 1.57 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-featureio-perl/ make -j2 install DESTDIR=/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' Manifying 8 pod documents Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/SeqFeature/Annotated.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/interpro.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gff.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/ptt.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/gtf.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/perl5/Bio/FeatureIO/bed.pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::SeqFeature::Annotated.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gtf.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::ptt.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::gff.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::bed.3pm Installing /build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905/debian/libbio-featureio-perl/usr/share/man/man3/Bio::FeatureIO::interpro.3pm make[1]: Leaving directory '/build/libbio-featureio-perl-FQoonx/libbio-featureio-perl-1.6.905' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-featureio-perl' in '../libbio-featureio-perl_1.6.905-2_all.deb'. dpkg-genbuildinfo -O../libbio-featureio-perl_1.6.905-2_amd64.buildinfo dpkg-genchanges -O../libbio-featureio-perl_1.6.905-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-08-18T00:33:10Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 18 Aug 2025 00:33:11 +0000 | +------------------------------------------------------------------------------+ libbio-featureio-perl_1.6.905-2_amd64.changes: ---------------------------------------------- Format: 1.8 Date: Mon, 13 Jan 2020 09:01:02 +0100 Source: libbio-featureio-perl Binary: libbio-featureio-perl Architecture: source all Version: 1.6.905-2 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-featureio-perl - Modules for reading, writing, and manipulating sequence features Changes: libbio-featureio-perl (1.6.905-2) unstable; urgency=medium . * Team upload * Source-only upload to allow testing migration Checksums-Sha1: 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(= 15.2.0-1), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-4), libsmartcols1 (= 2.41.1-1), libsqlite3-0 (= 3.46.1-7), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 258~rc2-2), libtest-deep-perl (= 1.205-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtree-dagnode-perl (= 1.35-1), libtry-tiny-perl (= 0.32-1), libtsan2 (= 15.2.0-1), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 258~rc2-2), libunistring5 (= 1.3-2), liburi-perl (= 5.30-1), libuuid1 (= 2.41.1-1), libwww-perl (= 6.78-1), libwww-robotrules-perl (= 6.02-1), libxml-dom-perl (= 1.46-2), libxml-dom-xpath-perl (= 0.14-4), libxml-parser-perl (= 2.47-1+b4), libxml-perl (= 0.08-4), libxml-regexp-perl (= 0.04-2), libxml-xpathengine-perl (= 0.14-2), libxml2-16 (= 2.14.5+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.2-1), openssl-provider-legacy (= 3.5.2-1), patch (= 2.8-2), perl (= 5.42.0-1), perl-base (= 5.42.0-1), perl-modules-5.42 (= 5.42.0-1), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.1-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1578902462" +------------------------------------------------------------------------------+ | Package contents Mon, 18 Aug 2025 00:33:11 +0000 | +------------------------------------------------------------------------------+ libbio-featureio-perl_1.6.905-2_all.deb --------------------------------------- new Debian package, version 2.0. size 51268 bytes: control archive=1564 bytes. 1500 bytes, 28 lines control 1502 bytes, 19 lines md5sums Package: libbio-featureio-perl Version: 1.6.905-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 145 Depends: perl:any, libbio-perl-perl, libscalar-list-utils-perl, libtree-dagnode-perl, liburi-perl, libxml-dom-perl, libxml-dom-xpath-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-FeatureIO Description: Modules for reading, writing, and manipulating sequence features An I/O iterator subsystem for genomic sequence features. . Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the format objects, which most people should use. . The Bio::FeatureIO system can be thought of like biological file handles. They are attached to filehandles with smart formatting rules (eg, GFF format, or BED format) and can either read or write feature objects (Bio::SeqFeature objects, or more correctly, Bio::FeatureHolderI implementing objects, of which Bio::SeqFeature is one such object). If you want to know what to do with a Bio::SeqFeatureI object, read Bio::SeqFeatureI. . The idea is that you request a stream object for a particular format. All the stream objects have a notion of an internal file that is read from or written to. A particular FeatureIO object instance is configured for either input or output. A specific example of a stream object is the Bio::FeatureIO::gff object. drwxr-xr-x root/root 0 2020-01-13 08:01 ./ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/ -rw-r--r-- root/root 266 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/changelog.Debian.gz -rw-r--r-- root/root 449 2014-09-05 17:34 ./usr/share/doc/libbio-featureio-perl/changelog.gz -rw-r--r-- root/root 1128 2020-01-13 08:01 ./usr/share/doc/libbio-featureio-perl/copyright drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/man/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/man/man3/ -rw-r--r-- root/root 4945 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO.3pm.gz -rw-r--r-- root/root 2255 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::bed.3pm.gz -rw-r--r-- root/root 3233 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::gff.3pm.gz -rw-r--r-- root/root 1617 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::gtf.3pm.gz -rw-r--r-- root/root 1808 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::interpro.3pm.gz -rw-r--r-- root/root 2779 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::ptt.3pm.gz -rw-r--r-- root/root 2195 2020-01-13 08:01 ./usr/share/man/man3/Bio::FeatureIO::vecscreen_simple.3pm.gz -rw-r--r-- root/root 5458 2020-01-13 08:01 ./usr/share/man/man3/Bio::SeqFeature::Annotated.3pm.gz drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/ drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 14074 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO.pm drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/FeatureIO/ -rw-r--r-- root/root 7054 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/bed.pm -rw-r--r-- root/root 27526 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/gff.pm -rw-r--r-- root/root 2128 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/gtf.pm -rw-r--r-- root/root 5622 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/interpro.pm -rw-r--r-- root/root 6012 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/ptt.pm -rw-r--r-- root/root 5023 2014-09-05 17:34 ./usr/share/perl5/Bio/FeatureIO/vecscreen_simple.pm drwxr-xr-x root/root 0 2020-01-13 08:01 ./usr/share/perl5/Bio/SeqFeature/ -rw-r--r-- root/root 33109 2014-09-05 17:34 ./usr/share/perl5/Bio/SeqFeature/Annotated.pm +------------------------------------------------------------------------------+ | Post Build Mon, 18 Aug 2025 00:33:11 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 18 Aug 2025 00:33:11 +0000 | +------------------------------------------------------------------------------+ Purging /build/libbio-featureio-perl-FQoonx Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 18 Aug 2025 00:33:12 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 1024 Build-Time: 4 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/libbio-featureio-perl_1.6.905-2.dsc Machine Architecture: amd64 Package: libbio-featureio-perl Package-Time: 30 Source-Version: 1.6.905-2 Space: 1024 Status: successful Version: 1.6.905-2 -------------------------------------------------------------------------------- Finished at 2025-08-18T00:33:10Z Build needed 00:00:30, 1024k disk space