sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | grinder 0.5.4-6 (amd64) Sun, 17 Aug 2025 19:51:48 +0000 | +==============================================================================+ Package: grinder Version: 0.5.4-6 Source Version: 0.5.4-6 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 17 Aug 2025 19:51:49 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup grinder_0.5.4-6 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup grinder_0.5.4-6 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 17 Aug 2025 19:51:49 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 Packages [547 kB] Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Fetched 734 kB in 7s (106 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu init-system-helpers libbinutils libctf-nobfd0 libctf0 libgprofng0 libidn2-0 libldap2 libsframe2 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB/5881 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [194 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.45-4 [810 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.45-4 [89.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.45-4 [157 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.45-4 [1042 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.45-4 [266 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.45-4 [539 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.45-4 [2556 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libsframe2 amd64 2.45-4 [79.5 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Fetched 5687 kB in 0s (126 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.69_all.deb ... Unpacking init-system-helpers (1.69) over (1.68) ... Setting up init-system-helpers (1.69) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.45-4_amd64.deb ... Unpacking libgprofng0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../1-libctf0_2.45-4_amd64.deb ... Unpacking libctf0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../2-libctf-nobfd0_2.45-4_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../3-binutils-x86-64-linux-gnu_2.45-4_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.45-4) over (2.45-3) ... Preparing to unpack .../4-binutils_2.45-4_amd64.deb ... Unpacking binutils (2.45-4) over (2.45-3) ... Preparing to unpack .../5-libbinutils_2.45-4_amd64.deb ... Unpacking libbinutils:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../6-binutils-common_2.45-4_amd64.deb ... Unpacking binutils-common:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../7-libsframe2_2.45-4_amd64.deb ... Unpacking libsframe2:amd64 (2.45-4) over (2.45-3) ... Preparing to unpack .../8-libidn2-0_2.3.8-3_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-3) over (2.3.8-2) ... Preparing to unpack .../9-libldap2_2.6.10+dfsg-1+b1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1+b1) over (2.6.10+dfsg-1) ... Setting up libsframe2:amd64 (2.45-4) ... Setting up binutils-common:amd64 (2.45-4) ... Setting up libctf-nobfd0:amd64 (2.45-4) ... Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libbinutils:amd64 (2.45-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libctf0:amd64 (2.45-4) ... Setting up libgprofng0:amd64 (2.45-4) ... Setting up binutils-x86-64-linux-gnu (2.45-4) ... Setting up binutils (2.45-4) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files Sun, 17 Aug 2025 19:51:59 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/grinder_0.5.4-6.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 17 Aug 2025 19:52:00 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man Filtered Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ InRelease Get:2 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ Release [609 B] Ign:3 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ Release.gpg Get:4 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ Sources [695 B] Get:5 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ Packages [714 B] Fetched 2018 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbio-perl-perl libdata-stag-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgetopt-euclid-perl libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libmath-random-mt-perl libpipeline1 libpod-parser-perl libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff bioperl libxml-sax-expatxs-perl libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl libwww-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbio-perl-perl libdata-stag-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgetopt-euclid-perl libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1t64 libmath-random-mt-perl libpipeline1 libpod-parser-perl libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 14.1 MB/14.1 MB of archives. After this operation, 50.9 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 liblocale-gettext-perl amd64 1.07-7+b2 [15.3 kB] Get:2 copy:/build/grinder-MKhwgw/resolver-ZEzkHI/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [896 B] Get:3 file:/srv/reprepro perl-5.42/main amd64 libmath-random-mt-perl amd64 1.17-2+b5 [14.2 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:25 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libgetopt-euclid-perl all 0.4.8-1 [44.6 kB] Preconfiguring packages ... Fetched 14.1 MB in 0s (123 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 14972 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.25_all.deb ... Unpacking libdebhelper-perl (13.25) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../22-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.25_all.deb ... Unpacking debhelper (13.25) ... Selecting previously unselected package help2man. Preparing to unpack .../29-help2man_1.49.3_amd64.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../30-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../31-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../32-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libpod-parser-perl. Preparing to unpack .../33-libpod-parser-perl_1.67-1_all.deb ... Adding 'diversion of /usr/bin/podselect to /usr/bin/podselect.bundled by libpod-parser-perl' Adding 'diversion of /usr/share/man/man1/podselect.1.gz to /usr/share/man/man1/podselect.bundled.1.gz by libpod-parser-perl' Unpacking libpod-parser-perl (1.67-1) ... Selecting previously unselected package libgetopt-euclid-perl. Preparing to unpack .../34-libgetopt-euclid-perl_0.4.8-1_all.deb ... Unpacking libgetopt-euclid-perl (0.4.8-1) ... Selecting previously unselected package libmath-random-mt-perl. Preparing to unpack .../35-libmath-random-mt-perl_1.17-2+b5_amd64.deb ... Unpacking libmath-random-mt-perl (1.17-2+b5) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../36-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libmath-random-mt-perl (1.17-2+b5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libpod-parser-perl (1.67-1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libgetopt-euclid-perl (0.4.8-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up liblocale-gettext-perl (1.07-7+b2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 17 Aug 2025 19:52:04 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Sun, 17 Aug 2025 19:52:04 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-gold_2.44-2 binutils-gold-x86-64-linux-gnu_2.44-2 binutils-x86-64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 gnupg_2.4.8-2 gnupg-l10n_2.4.8-2 gpg_2.4.8-2 gpg-agent_2.4.8-2 gpgconf_2.4.8-2 gpgsm_2.4.8-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 help2man_1.49.3 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.4 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libassuan9_3.0.2-2 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libbio-perl-perl_1.7.8-1 libblkid1_2.41.1-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgcrypt20_1.11.2-2 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgetopt-euclid-perl_0.4.8-1 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgpg-error0_1.55-2 libgprofng0_2.45-4 libhogweed6t64_3.10.1-1 libhwasan0_15.2.0-1 libidn2-0_2.3.8-3 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.1-1 libldap2_2.6.10+dfsg-1+b1 liblocale-gettext-perl_1.07-7+b2 liblsan0_15.2.0-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmath-random-mt-perl_1.17-2+b5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libperl5.42_5.42.0-1 libpipeline1_1.5.8-1 libpod-parser-perl_1.67-1 libquadmath0_15.2.0-1 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsystemd0_258~rc2-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 libuuid1_2.41.1-1 libxml2-16_2.14.5+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.2-1 passwd_1:4.17.4-2 patch_2.8-2 perl_5.42.0-1 perl-base_5.42.0-1 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-1 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sun, 17 Aug 2025 19:52:04 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: grinder Binary: grinder Architecture: all Version: 0.5.4-6 Maintainer: Debian Med Packaging Team Uploaders: Florent Angly , Andreas Tille Homepage: https://sourceforge.net/projects/biogrinder/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/grinder Vcs-Git: https://salsa.debian.org/med-team/grinder.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl, help2man Package-List: grinder deb science optional arch=all Checksums-Sha1: b2d1434bb080fe71075c30f1b0025b2496033c8f 162970 grinder_0.5.4.orig.tar.gz 4dfe81794c963458069b3b17e64ff5cade9dc867 5640 grinder_0.5.4-6.debian.tar.xz Checksums-Sha256: c34edcae59d1a461d354bae5e3798e98b42f6a31768585e598fe6bfa305c8fe4 162970 grinder_0.5.4.orig.tar.gz 29a9f4fa47d070085002e40730ffa4e4c84790634925968f304281972d26a8ab 5640 grinder_0.5.4-6.debian.tar.xz Files: 208730ac58a0db8feefd26297632d321 162970 grinder_0.5.4.orig.tar.gz 18200153ff9ae507d940b62e011e89a0 5640 grinder_0.5.4-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/JIrIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEqgw//UV9VHJwGhmCaN384X1ec8ZQ3CKFEjHZc BxqauWI2f9PyGHAj1kehTlIfzjAbG7Z7SZMCDlKA/gcsmC1Bz3K2tFf4CMNK5OjG PcfBSonTtjQ1Q+hYIxjMIzCc7LuuMIfH4qgX9WLzCWzkx/sS1eaO6wKAU0Hhj51h rZraJFsKuPj1hDlElOtbBDFdo1yl/rKUNzEBK+kzyn1NsgGytRyt7h3Uw8E0Ts55 A6+e48a5hE5+5xR0nhAdEbOYfbefnB37LvFn0O3HznNI905tNMHkwk8wCzUBzvrg kFU0DKtkCpk1+MG2khswFWOyHLMsC0Al9unDeDjlofLLfq7Hfyq5W0IcE8D1/Hdy lqeLZ0u3dQoOVspZ+XhlQilLReN2iKVdSXugXgeRk7sgc11LeGjMjkWLLLadw4IM r345Bz5WMR6B1A7uY/GpSDffeFJkTF9M4fzWR9HUk7Lk5ILysTpn4pyrY9AQbJhq goRKz/HgauopAmPzsZRk3i1LNPhlzcqGtD+Z8dMzBJEWJSUQmdmr6HrFu+qELXnQ hKykeOmLyi1VTlM005Farm7YlrrNAu21AjuJdJZwc0ADk1jko2kaoQWHZAuhVkuD VONJ+2UXrcc4sBablfabsZrABq3MNMXMmViOytwYe71SzUd/txu5oTeyHku8cXHF tL4mQCnrssA= =VTfm -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./grinder_0.5.4-6.dsc: no acceptable signature found dpkg-source: info: extracting grinder in /build/grinder-MKhwgw/grinder-0.5.4 dpkg-source: info: unpacking grinder_0.5.4.orig.tar.gz dpkg-source: info: unpacking grinder_0.5.4-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dot-in-inc.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 17 Aug 2025 19:52:05 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network grinder_0.5.4-6 perl-5.42-throwaway amd64 ---------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network grinder_0.5.4-6 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/grinder-MKhwgw/grinder-0.5.4 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-e80471ea-08f9-490a-bc6b-2dec7d0c1ec7 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package grinder dpkg-buildpackage: info: source version 0.5.4-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' dh_auto_clean rm -rf debian/man if [ -d _disposal ] ; then \ if [ -e _disposal/MYMETA.yml ] ; then mv _disposal/MYMETA.yml . ; fi ; \ for pm in `cd _disposal ; find Bio -type f ; cd ..` ; do \ mv _disposal/${pm} lib/${pm} ; \ done ; \ fi rm -rf _disposal make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building grinder using existing ./grinder_0.5.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building grinder in grinder_0.5.4-6.debian.tar.xz dpkg-source: info: building grinder in grinder_0.5.4-6.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' # MYMETA.yml will be changed and not reverted in clean target - use the chance to conserve it here mkdir _disposal cp -a MYMETA.yml _disposal dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/grinder-MKhwgw/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/grinder-MKhwgw/grinder-0.5.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Warning: prerequisite Test::Warn 0 not found. *** Module::AutoInstall version 1.16 *** Checking for Perl dependencies... [Core Features] - Test::More ...loaded. (1.302210) - Test::Warn ...missing. - Bio::Root::Version ...loaded. (1.7.8 >= 1.006923) - Bio::DB::Fasta ...loaded. (1.7.8) - Bio::Location::Split ...loaded. (1.7.8) - Bio::PrimarySeq ...loaded. (1.7.8) - Bio::Root::Root ...loaded. (1.7.8) - Bio::SeqIO ...loaded. (1.7.8) - Bio::SeqFeature::SubSeq ...loaded. (1.7.8) - Bio::Seq::SimulatedRead ...loaded. (1.7.8) - Bio::Tools::AmpliconSearch ...loaded. (1.7.8) - Getopt::Euclid ...loaded. (0.4.5 >= 0.4.4) - List::Util ...loaded. (1.68_01) - Math::Random::MT ...loaded. (1.17 >= 1.16) - version ...loaded. (0.9933 >= 0.77) *** Module::AutoInstall configuration finished. Checking if your kit is complete... Looks good Invalid LICENSE value 'gpl3' ignored Generating a Unix-style Makefile Writing Makefile for Grinder Writing MYMETA.yml and MYMETA.json *** Building doc... make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' debian/rules override_dh_auto_build make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' mkdir -p debian/man echo "$MORE" > debian/man/more.1 PERL5LIB=lib help2man --no-discard-stderr --name 'Versatile omics shotgun and amplicon sequencing read simulator' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/grinder.1 bin/grinder help2man --no-discard-stderr --name 'Calculate the average genome size in Grinder libraries' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/average_genome_size.1 utils/average_genome_size help2man --no-discard-stderr --name 'Reverses the orientation of each paired\-end FASTA sequence' --section 1 --version-string 0.5.4 --no-info --include debian/man/more.1 --output debian/man/change_paired_read_orientation.1 utils/change_paired_read_orientation rm debian/man/more.1 dh_auto_build make -j2 make[2]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' cp lib/Grinder/KmerCollection.pm blib/lib/Grinder/KmerCollection.pm cp lib/Grinder/Database.pm blib/lib/Grinder/Database.pm cp lib/Grinder.pm blib/lib/Grinder.pm cp utils/average_genome_size blib/script/average_genome_size cp utils/change_paired_read_orientation blib/script/change_paired_read_orientation "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/average_genome_size "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/change_paired_read_orientation cp bin/grinder blib/script/grinder "/usr/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/grinder Manifying 2 pod documents Manifying 2 pod documents make[2]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' debian/rules override_dh_auto_test make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' /usr/bin/make testdb TEST_FILE=t/00-load.t TESTDB_SW='' make[2]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-Iinc" "-Iblib/lib" "-Iblib/arch" t/00-load.t ok 1 - use Grinder; ok 2 - use Grinder::KmerCollection; ok 3 - use Grinder::Database; ok 4 - use t::TestUtils; # Testing Grinder 0.5.4, Perl 5.042000, /usr/bin/perl 1..4 make[2]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/grinder/ make -j2 install DESTDIR=/build/grinder-MKhwgw/grinder-0.5.4/debian/grinder AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' Manifying 2 pod documents Manifying 2 pod documents Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder.pm Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/KmerCollection.pm Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/perl5/Grinder/Database.pm Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/man/man1/change_paired_read_orientation.1p Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/man/man1/average_genome_size.1p Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder::KmerCollection.3pm Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/share/man/man3/Grinder.3pm Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/bin/change_paired_read_orientation Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/bin/average_genome_size Installing /build/grinder-MKhwgw/grinder-0.5.4/debian/grinder/usr/bin/grinder make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' debian/rules override_dh_install make[1]: Entering directory '/build/grinder-MKhwgw/grinder-0.5.4' dh_install for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/grinder-MKhwgw/grinder-0.5.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'grinder' in '../grinder_0.5.4-6_all.deb'. dpkg-genbuildinfo -O../grinder_0.5.4-6_amd64.buildinfo dpkg-genchanges -O../grinder_0.5.4-6_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-08-17T19:52:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 17 Aug 2025 19:52:16 +0000 | +------------------------------------------------------------------------------+ grinder_0.5.4-6_amd64.changes: ------------------------------ Format: 1.8 Date: Thu, 03 Dec 2020 17:41:21 +0100 Source: grinder Binary: grinder Architecture: source all Version: 0.5.4-6 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: grinder - Versatile omics shotgun and amplicon sequencing read simulator Changes: grinder (0.5.4-6) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Repository. * watch file standard 4 (routine-update) Checksums-Sha1: 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grinder_0.5.4-6_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Sun, 17 Aug 2025 19:52:16 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: grinder Binary: grinder Architecture: all source Version: 0.5.4-6 Checksums-Md5: cf6670fbe74943f0f86293db28feb97d 1195 grinder_0.5.4-6.dsc a70d12f85f72dbcc58994682e97e1bb0 83436 grinder_0.5.4-6_all.deb Checksums-Sha1: 7da2a4348275c13675ea799ef10f7fbe5aac8626 1195 grinder_0.5.4-6.dsc 05f7e3b731405bac81ba4e44479d93c00ed5cdab 83436 grinder_0.5.4-6_all.deb Checksums-Sha256: 16aa2ccbc59a998d2771a20130f7b39c8d7b40b07086c4f8a3a0de5bd316599b 1195 grinder_0.5.4-6.dsc d13598c529d388102d83c40095ac12e4165962a0816e7c10e5b3f9981122cb9e 83436 grinder_0.5.4-6_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 17 Aug 2025 19:52:16 +0000 Build-Path: /build/grinder-MKhwgw/grinder-0.5.4 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), binutils (= 2.45-4), binutils-common (= 2.45-4), binutils-x86-64-linux-gnu (= 2.45-4), bsdextrautils (= 2.41.1-1), bsdutils (= 1:2.41.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.3.0-5), cpp-14-x86-64-linux-gnu (= 14.3.0-5), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-x86-64-linux-gnu (= 14.3.0-5), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.3.0-5), gcc-14-base (= 14.3.0-5), gcc-14-x86-64-linux-gnu (= 14.3.0-5), gcc-15-base (= 15.2.0-1), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), help2man (= 1.49.3), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-1), libatomic1 (= 15.2.0-1), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.45-4), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.41.1-1), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-4), libctf0 (= 2.45-4), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.25), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-14-dev (= 14.3.0-5), libgcc-s1 (= 15.2.0-1), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgetopt-euclid-perl (= 0.4.8-1), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 15.2.0-1), libgprofng0 (= 2.45-4), libhwasan0 (= 15.2.0-1), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-1), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41.1-1), liblocale-gettext-perl (= 1.07-7+b2), liblsan0 (= 15.2.0-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmath-random-mt-perl (= 1.17-2+b5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.1-1), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.42 (= 5.42.0-1), libpipeline1 (= 1.5.8-1), libpod-parser-perl (= 1.67-1), libquadmath0 (= 15.2.0-1), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-4), libsmartcols1 (= 2.41.1-1), libsqlite3-0 (= 3.46.1-7), libssl3t64 (= 3.5.2-1), libstdc++-14-dev (= 14.3.0-5), libstdc++6 (= 15.2.0-1), libsystemd0 (= 258~rc2-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 15.2.0-1), libubsan1 (= 15.2.0-1), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 258~rc2-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.1-1), libxml2-16 (= 2.14.5+dfsg-0.1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.38-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.2-1), patch (= 2.8-2), perl (= 5.42.0-1), perl-base (= 5.42.0-1), perl-modules-5.42 (= 5.42.0-1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41.1-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1607013681" +------------------------------------------------------------------------------+ | Package contents Sun, 17 Aug 2025 19:52:16 +0000 | +------------------------------------------------------------------------------+ grinder_0.5.4-6_all.deb ----------------------- new Debian package, version 2.0. size 83436 bytes: control archive=1456 bytes. 1165 bytes, 22 lines control 1290 bytes, 18 lines md5sums Package: grinder Version: 0.5.4-6 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 249 Depends: perl:any, libbio-perl-perl, libgetopt-euclid-perl, libmath-random-mt-perl Section: science Priority: optional Homepage: https://sourceforge.net/projects/biogrinder/ Description: Versatile omics shotgun and amplicon sequencing read simulator Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. . Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test the accuracy of bioinformatic tools under specific hypothesis, e.g. with or without sequencing errors, or with low or high community diversity. Grinder may also be used to help decide between alternative sequencing methods for a sequence-based project, e.g. should the library be paired-end or not, how many reads should be sequenced. drwxr-xr-x root/root 0 2020-12-03 16:41 ./ drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/ drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/bin/ -rwxr-xr-x root/root 5246 2020-12-03 16:41 ./usr/bin/average_genome_size -rwxr-xr-x root/root 2443 2020-12-03 16:41 ./usr/bin/change_paired_read_orientation -rwxr-xr-x root/root 1012 2020-12-03 16:41 ./usr/bin/grinder drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/ drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/doc/grinder/ -rw-r--r-- root/root 10701 2016-01-18 15:30 ./usr/share/doc/grinder/README.gz -rw-r--r-- root/root 38652 2016-01-18 15:30 ./usr/share/doc/grinder/README.htm -rw-r--r-- root/root 841 2020-12-03 16:41 ./usr/share/doc/grinder/changelog.Debian.gz -rw-r--r-- root/root 5335 2016-01-18 15:06 ./usr/share/doc/grinder/changelog.gz -rw-r--r-- root/root 2170 2020-12-03 16:41 ./usr/share/doc/grinder/copyright drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/man/man1/ -rw-r--r-- root/root 436 2020-12-03 16:41 ./usr/share/man/man1/average_genome_size.1.gz -rw-r--r-- root/root 1766 2020-12-03 16:41 ./usr/share/man/man1/average_genome_size.1p.gz -rw-r--r-- root/root 418 2020-12-03 16:41 ./usr/share/man/man1/change_paired_read_orientation.1.gz -rw-r--r-- root/root 1766 2020-12-03 16:41 ./usr/share/man/man1/change_paired_read_orientation.1p.gz -rw-r--r-- root/root 5167 2020-12-03 16:41 ./usr/share/man/man1/grinder.1.gz drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/man/man3/ -rw-r--r-- root/root 12076 2020-12-03 16:41 ./usr/share/man/man3/Grinder.3pm.gz -rw-r--r-- root/root 2453 2020-12-03 16:41 ./usr/share/man/man3/Grinder::KmerCollection.3pm.gz drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/perl5/ -rw-r--r-- root/root 114007 2016-01-18 15:14 ./usr/share/perl5/Grinder.pm drwxr-xr-x root/root 0 2020-12-03 16:41 ./usr/share/perl5/Grinder/ -rw-r--r-- root/root 15362 2014-01-15 19:51 ./usr/share/perl5/Grinder/Database.pm -rw-r--r-- root/root 12881 2015-12-22 20:02 ./usr/share/perl5/Grinder/KmerCollection.pm +------------------------------------------------------------------------------+ | Post Build Sun, 17 Aug 2025 19:52:16 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 17 Aug 2025 19:52:16 +0000 | +------------------------------------------------------------------------------+ Purging /build/grinder-MKhwgw Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 17 Aug 2025 19:52:17 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 2044 Build-Time: 11 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/grinder_0.5.4-6.dsc Machine Architecture: amd64 Package: grinder Package-Time: 28 Source-Version: 0.5.4-6 Space: 2044 Status: successful Version: 0.5.4-6 -------------------------------------------------------------------------------- Finished at 2025-08-17T19:52:16Z Build needed 00:00:28, 2044k disk space