sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | gff2aplot 2.0-15 (amd64) Sun, 17 Aug 2025 16:37:46 +0000 | +==============================================================================+ Package: gff2aplot Version: 2.0-15 Source Version: 2.0-15 Distribution: perl-5.42-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Sun, 17 Aug 2025 16:37:48 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup gff2aplot_2.0-15 perl-5.42-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup gff2aplot_2.0-15 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Sun, 17 Aug 2025 16:37:48 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:1 file:/srv/reprepro perl-5.42 InRelease [3024 B] Get:2 file:/srv/reprepro perl-5.42/main amd64 Packages [547 kB] Get:3 http://deb.debian.org/debian unstable InRelease [216 kB] Get:4 http://deb.debian.org/debian sid InRelease [216 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://deb.debian.org/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [102 kB] Get:8 http://deb.debian.org/debian sid/main Sources T-2025-08-17-1413.37-F-2025-08-16-2015.43.pdiff [73.0 kB] Fetched 734 kB in 8s (90.4 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu init-system-helpers libbinutils libctf-nobfd0 libctf0 libgprofng0 libidn2-0 libldap2 libsframe2 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5687 kB/5881 kB of archives. After this operation, 7168 B of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.42/main amd64 libldap2 amd64 2.6.10+dfsg-1+b1 [194 kB] Get:2 http://deb.debian.org/debian unstable/main amd64 init-system-helpers all 1.69 [39.3 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libgprofng0 amd64 2.45-4 [810 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libctf0 amd64 2.45-4 [89.7 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 libctf-nobfd0 amd64 2.45-4 [157 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.45-4 [1042 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 binutils amd64 2.45-4 [266 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 libbinutils amd64 2.45-4 [539 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 binutils-common amd64 2.45-4 [2556 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libsframe2 amd64 2.45-4 [79.5 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-3 [109 kB] Fetched 5687 kB in 0s (74.8 MB/s) (Reading database ... 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Setting up libidn2-0:amd64 (2.3.8-3) ... Setting up libbinutils:amd64 (2.45-4) ... Setting up libldap2:amd64 (2.6.10+dfsg-1+b1) ... Setting up libctf0:amd64 (2.45-4) ... Setting up libgprofng0:amd64 (2.45-4) ... Setting up binutils-x86-64-linux-gnu (2.45-4) ... Setting up binutils (2.45-4) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files Sun, 17 Aug 2025 16:38:02 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/gff2aplot_2.0-15.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 17 Aug 2025 16:38:02 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ InRelease Get:2 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ Release [609 B] Ign:3 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ Release.gpg Get:4 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ Sources [600 B] Get:5 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (94.3 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2-16 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After this operation, 40.3 MB of additional disk space will be used. Get:1 copy:/build/gff2aplot-GWPOkr/resolver-eFNmj9/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.25 [91.6 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.1 [640 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.25 [937 kB] Preconfiguring packages ... Fetched 10.7 MB in 0s (131 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 14972 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.1) ... Setting up libdebhelper-perl (13.25) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.25) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures Sun, 17 Aug 2025 16:38:09 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 17 Aug 2025 16:38:09 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.45-4 dpkg-dev_1.22.21 g++-14_14.3.0-5 gcc-14_14.3.0-5 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 linux-libc-dev_6.12.38-1 Package versions: adduser_3.152 apt_3.1.4 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.2.37-2+b5 binutils_2.45-4 binutils-common_2.45-4 binutils-gold_2.44-2 binutils-gold-x86-64-linux-gnu_2.44-2 binutils-x86-64-linux-gnu_2.45-4 bsdextrautils_2.41.1-1 bsdutils_1:2.41.1-1 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.3.0-5 cpp-14-x86-64-linux-gnu_14.3.0-5 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.25 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.8-2 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.3.0-5 g++-14-x86-64-linux-gnu_14.3.0-5 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.3.0-5 gcc-14-base_14.3.0-5 gcc-14-x86-64-linux-gnu_14.3.0-5 gcc-15-base_15.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 gnupg_2.4.8-2 gnupg-l10n_2.4.8-2 gpg_2.4.8-2 gpg-agent_2.4.8-2 gpgconf_2.4.8-2 gpgsm_2.4.8-2 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.4 libarchive-zip-perl_1.68-1 libasan8_15.2.0-1 libassuan9_3.0.2-2 libatomic1_15.2.0-1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.45-4 libblkid1_2.41.1-1 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-4 libctf0_2.45-4 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.25 libdpkg-perl_1.22.21 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-14-dev_14.3.0-5 libgcc-s1_15.2.0-1 libgcrypt20_1.11.2-2 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-1 libgpg-error0_1.55-2 libgprofng0_2.45-4 libhogweed6t64_3.10.1-1 libhwasan0_15.2.0-1 libidn2-0_2.3.8-3 libisl23_0.27-1 libitm1_15.2.0-1 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41.1-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_15.2.0-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.1-1 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-6 libperl5.42_5.42.0-1 libpipeline1_1.5.8-1 libquadmath0_15.2.0-1 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-4 libsmartcols1_2.41.1-1 libsqlite3-0_3.46.1-7 libssl3t64_3.5.2-1 libstdc++-14-dev_14.3.0-5 libstdc++6_15.2.0-1 libsystemd0_258~rc2-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_15.2.0-1 libubsan1_15.2.0-1 libuchardet0_0.0.8-1+b2 libudev1_258~rc2-2 libunistring5_1.3-2 libuuid1_2.41.1-1 libxml2-16_2.14.5+dfsg-0.1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.38-1 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.2-1 passwd_1:4.17.4-2 patch_2.8-2 perl_5.42.0-1 perl-base_5.42.0-1 perl-modules-5.40_5.40.1-6 perl-modules-5.42_5.42.0-1 pinentry-curses_1.3.2-3 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 util-linux_2.41.1-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Sun, 17 Aug 2025 16:38:09 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gff2aplot Binary: gff2aplot Architecture: any Version: 2.0-15 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://genome.crg.es/software/gfftools/GFF2APLOT.html Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/gff2aplot Vcs-Git: https://salsa.debian.org/med-team/gff2aplot.git Testsuite: autopkgtest Testsuite-Triggers: ghostscript, graphicsmagick, imagemagick Build-Depends: debhelper-compat (= 13) Package-List: gff2aplot deb science optional arch=any Checksums-Sha1: 469f99901a437f8b539b8b29be9cb0f392d6633b 328439 gff2aplot_2.0.orig.tar.gz 7f336c40811459aceb3ad0fbb2a81048732612a3 20764 gff2aplot_2.0-15.debian.tar.xz Checksums-Sha256: 33798a1f2877fc9d64aaf143c2e5bb909021b1f147c6718e61fbcc96cc65ccc3 328439 gff2aplot_2.0.orig.tar.gz 341ed9d8a0f8cf26c7c28cfad34cdc49e59230d16d8dc6afd3b9ecfd2ad5cbe7 20764 gff2aplot_2.0-15.debian.tar.xz Files: 8b269e236bcbacb1c70e4a3424940dc6 328439 gff2aplot_2.0.orig.tar.gz 53d9a4f53d588d060b186aa6226a687f 20764 gff2aplot_2.0-15.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXAyPkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFfeQ/9FZfoiO4smc+53Q0Ezfb3fword/HVh/IR ggXK4Ki8h4AF0PHpAbWgSSD6mn1V3MnPw5yR2etGPeSSmHouK16GTNih1VK1J6Fm k3YtNWiJo5u87yJTpl9MLblhwf1OpBxty4FBVVHIKmOZe39dyKnvP/kidzvLP6OL P68MUqlHUVVqVaZVn/IuSZvAJgYW+XMrIGbgC/AkOHw0My8oZUcizBsUODiVPqQ3 C07LxsWzgxY4IGRzUEBQ+YYWogxxgyG4yXaXrCw9klDKoHKcCdtp2scA4fLKMsgb CbxhCHjt0B/7k+gVIceZYWejymIYF4ANLcTcFyrtQYjTmpfc8LptUIMxvoUC1WXD CX8yO+KyhRWPjj82m10IPXSDc6ZWTa/tszqEdMzaeT6Zuf4UTF/LMaCLhqZDS6cb vQwH+6RBF9Y3zXz4VJx8ux3B22QsgOYUTQi8yl6hWnM4SPiJj0WqW4e3lVp3W7yf bocCC2UBjg63fgJGpjXSt2AjzNf62IZG9flWRtw8l830GSOWt15Eb+q3WhK7dPmO q6LxzyJOhoCfx9SRTQSPq7rqRmJlXstVs/F0V/6bC9kYzf1jlN+ITUCmuf7m5zzL ELprqaA6vyeD2Zgvd7/kj7tNpZ09n9mSKT29OuH5ZCdRR8X/4s1ccCg70SMtO9Cr WLGbwv3ljTw= =Z4Vx -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./gff2aplot_2.0-15.dsc: no acceptable signature found dpkg-source: info: extracting gff2aplot in /build/gff2aplot-GWPOkr/gff2aplot-2.0 dpkg-source: info: unpacking gff2aplot_2.0.orig.tar.gz dpkg-source: info: unpacking gff2aplot_2.0-15.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying non_lexical_loop_iterator.patch dpkg-source: info: applying 02-blat2gff.diff dpkg-source: info: applying 03-parseblast.diff dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying fis-privacy-breach.patch dpkg-source: info: applying perl_5.28.patch dpkg-source: info: applying fix_install_ali2gff.patch dpkg-source: info: applying enhance_sprintf_buffer.patch dpkg-source: info: applying fix_README_used_for_test.patch dpkg-source: info: applying fix_gff_comments.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Sun, 17 Aug 2025 16:38:10 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network gff2aplot_2.0-15 perl-5.42-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network gff2aplot_2.0-15 perl-5.42-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/gff2aplot-GWPOkr/gff2aplot-2.0 SCHROOT_ALIAS_NAME=perl-5.42-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.42-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.42-amd64-debomatic-2bf81e18-3acf-4658-8e57-58484d3c22e0 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package gff2aplot dpkg-buildpackage: info: source version 2.0-15 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' rm -f src/ali2gff/ali2gff bin/* make[1]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building gff2aplot using existing ./gff2aplot_2.0.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building gff2aplot in gff2aplot_2.0-15.debian.tar.xz dpkg-source: info: building gff2aplot in gff2aplot_2.0-15.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' ### ### RUNNING MAKEFILE ### ### Sun Aug 17 16:38:12 UTC 2025 -- debomatic ### Finishing PERL script from "src/gff2aplot.pl" -> "bin/gff2aplot.pl" ### ### Finishing PERL script from "src/parseblast.pl" -> "bin/parseblast.pl" ### Finishing PERL script from "src/blat2gff.pl" -> "bin/blat2gff.pl" ### Finishing PERL script from "src/sim2gff.pl" -> "bin/sim2gff.pl" ### Making ALI2GFF... make[2]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0/src/ali2gff' ### ### MAKEFILE DONE... ### ali2gff.c: In function ‘main’: ali2gff.c:88:15: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 88 | char *ptr; | ^~~ ali2gff.c: In function ‘processMumfile’: ali2gff.c:527:86: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 527 | if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); | ~^ ~~~~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld ali2gff.c:527:92: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 527 | if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); | ~^ ~~~~~~~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld ali2gff.c:768:86: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 768 | if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); | ~^ ~~~~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld ali2gff.c:768:92: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 768 | if (DEBUG) fprintf(stderr,"gap data: length %d-20=%d\n%s\n%s\n%s\n",strlen(seq1),strlen(seq1)-20,seq1,seq2,err); | ~^ ~~~~~~~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld ali2gff.c: In function ‘processGFFfile’: ali2gff.c:355:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 355 | else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", xName,yName,source,xb,yb,xe,ye,scores,strands,frames); | ^~ ~~~~~ In file included from /usr/include/stdio.h:970, from ali2gff.h:20, from ali2gff.c:64: In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:355:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 4028) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:354:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 354 | if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",xName,yName,source,xb,yb,xe,ye,score ,strands,frames); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:354:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 2034) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:351:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 351 | else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", xName,yName,source,xb,yb,xe,ye,scores,strands,frames,cptr); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:351:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 4028) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:350:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 350 | if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",xName,yName,source,xb,yb,xe,ye,score ,strands,frames,cptr); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:350:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 2034) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:300:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 300 | else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\n", yName,xName,source,yb,xb,ye,xe,scores,strands,frames); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:300:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 4028) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:299:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 299 | if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\n",yName,xName,source,yb,xb,ye,xe,score,strands,frames); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:299:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 2034) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:296:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 296 | else sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%s\t%s\t%s\t%s", yName,xName,source,yb,xb,ye,xe,scores,strands,frames,cptr); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:296:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 25 or more bytes (assuming 4028) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processGFFfile’: ali2gff.c:295:113: warning: ‘%s’ directive writing up to 999 bytes into a region of size between 0 and 999 [-Wformat-overflow=] 295 | if (sscanf(scores,"%f",&score) == 1) sprintf(aliPrintString,"%s:%s\t%s\talignment\t%lu:%lu\t%lu:%lu\t%5.3f\t%s\t%s\t%s",yName,xName,source,yb,xb,ye,xe,score,strands,frames,cptr); | ^~ ~~~~~ In function ‘sprintf’, inlined from ‘processGFFfile’ at ali2gff.c:295:44: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output 30 or more bytes (assuming 2034) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ali2gff.c: In function ‘processMumfile’: ali2gff.c:732:40: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 732 | score = (score - errCount)/score; // match percentage | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ ali2gff.c:420:15: note: ‘score’ was declared here 420 | float score; | ^~~~~ ali2gff.c:840:67: warning: ‘fxb’ may be used uninitialized [-Wmaybe-uninitialized] 840 | fxe = fxb + flen - 1; | ~~~~^~~~~~ ali2gff.c:421:27: note: ‘fxb’ was declared here 421 | unsigned long int fxb, fxe, fyb, fye; // start and end positions of gaps resp. fragments of gaps | ^~~ ali2gff.c:841:67: warning: ‘fyb’ may be used uninitialized [-Wmaybe-uninitialized] 841 | fye = fyb + flen - 1; | ~~~~^~~~~~ ali2gff.c:421:37: note: ‘fyb’ was declared here 421 | unsigned long int fxb, fxe, fyb, fye; // start and end positions of gaps resp. fragments of gaps | ^~~ ali2gff.c: In function ‘processSimfile’: ali2gff.c:1064:36: warning: ‘xseqLen_4’ may be used uninitialized [-Wmaybe-uninitialized] 1064 | if (!opt_i || ((xe - xb < xseqLen_4) && (ye - yb < yseqLen_4))) { | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ali2gff.c:997:27: note: ‘xseqLen_4’ was declared here 997 | unsigned long int xseqLen_4; /* length of x sequence -5 */ | ^~~~~~~~~ ali2gff.c:1064:62: warning: ‘yseqLen_4’ may be used uninitialized [-Wmaybe-uninitialized] 1064 | if (!opt_i || ((xe - xb < xseqLen_4) && (ye - yb < yseqLen_4))) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ali2gff.c:998:27: note: ‘yseqLen_4’ was declared here 998 | unsigned long int yseqLen_4; /* length of y sequence -5 */ | ^~~~~~~~~ ali2gff.c: In function ‘main’: ali2gff.c:135:9: warning: ‘__builtin_strncpy’ specified bound 1000 equals destination size [-Wstringop-truncation] 135 | strncpy(infile,argv[1],MAXSTRING); | ^ make[2]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0/src/ali2gff' mkdir -p ./bin cp ./src/ali2gff/ali2gff \ ./bin/ali2gff mode of 'bin/gff2aplot.pl' changed from 0644 (rw-r--r--) to 0755 (rwxr-xr-x) mode of 'bin/parseblast.pl' changed from 0644 (rw-r--r--) to 0755 (rwxr-xr-x) mode of 'bin/blat2gff.pl' changed from 0644 (rw-r--r--) to 0755 (rwxr-xr-x) mode of 'bin/sim2gff.pl' changed from 0644 (rw-r--r--) to 0755 (rwxr-xr-x) make[1]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' dh_auto_test make -j2 test make[1]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' ### SORRY !!! Tests were not implemented yet... make[1]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' for script in `find bin -name "*.pl"` ; do mv $script bin/`basename $script .pl` ; done make[1]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' dh_installexamples # Fix path names, silence GS find debian/*/usr/share/doc/*/examples -name README -exec sed -i \ -e 's?^$BIN/\([0-9a-z]\+\)\.pl?\1?' \ -e 's?^$BIN/\([0-9a-z]\+\) ?\1 ?' \ -e 's?^GS=.*;?GS="gs -q" ;?' \{\} \; make[1]: Leaving directory '/build/gff2aplot-GWPOkr/gff2aplot-2.0' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'gff2aplot-dbgsym' in '../gff2aplot-dbgsym_2.0-15_amd64.deb'. dpkg-deb: building package 'gff2aplot' in '../gff2aplot_2.0-15_amd64.deb'. dpkg-genbuildinfo -O../gff2aplot_2.0-15_amd64.buildinfo dpkg-genchanges -O../gff2aplot_2.0-15_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-08-17T16:38:17Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 17 Aug 2025 16:38:17 +0000 | +------------------------------------------------------------------------------+ gff2aplot_2.0-15_amd64.changes: ------------------------------- Format: 1.8 Date: Mon, 05 Feb 2024 12:09:38 +0100 Source: gff2aplot Binary: gff2aplot gff2aplot-dbgsym Architecture: source amd64 Version: 2.0-15 Distribution: perl-5.42-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: gff2aplot - pair-wise alignment-plots for genomic sequences in PostScript Closes: 1044834 Changes: gff2aplot (2.0-15) unstable; urgency=medium . * Fix clean target Closes: #1044834 * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 307f1a1e9442c1773b4dd26d5a839c21cbe03b1b 1136 gff2aplot_2.0-15.dsc 7f336c40811459aceb3ad0fbb2a81048732612a3 20764 gff2aplot_2.0-15.debian.tar.xz 44d52a0af1803ed93f83e21c68e96d071afd1da0 24976 gff2aplot-dbgsym_2.0-15_amd64.deb 01338ce68f1749f402514f0642e2c12bfed821d4 5110 gff2aplot_2.0-15_amd64.buildinfo 1f9095d90701cd58204d6d0436e66a3e6e0e245a 244208 gff2aplot_2.0-15_amd64.deb Checksums-Sha256: 3dc3e45f64cd26fbf1683b1805f93f2da0a7f2b544e8db7beab19a951d230530 1136 gff2aplot_2.0-15.dsc 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+------------------------------------------------------------------------------+ Format: 1.0 Source: gff2aplot Binary: gff2aplot gff2aplot-dbgsym Architecture: amd64 source Version: 2.0-15 Checksums-Md5: cc52a39abf166ea6cee08f5eba4283c0 1136 gff2aplot_2.0-15.dsc 677139206521956e904647ea01b1cbb0 24976 gff2aplot-dbgsym_2.0-15_amd64.deb 3f6209dc759774fc2fe112d5208d99e3 244208 gff2aplot_2.0-15_amd64.deb Checksums-Sha1: 307f1a1e9442c1773b4dd26d5a839c21cbe03b1b 1136 gff2aplot_2.0-15.dsc 44d52a0af1803ed93f83e21c68e96d071afd1da0 24976 gff2aplot-dbgsym_2.0-15_amd64.deb 1f9095d90701cd58204d6d0436e66a3e6e0e245a 244208 gff2aplot_2.0-15_amd64.deb Checksums-Sha256: 3dc3e45f64cd26fbf1683b1805f93f2da0a7f2b544e8db7beab19a951d230530 1136 gff2aplot_2.0-15.dsc 1be858305ded6d357601abc1281a7c1f297e7a5c6897aa01dfc9bab557df95b1 24976 gff2aplot-dbgsym_2.0-15_amd64.deb 7822715c815679bccf203bd3d42b144a0978c4100fe80ad358ecfd9228e03f56 244208 gff2aplot_2.0-15_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 17 Aug 2025 16:38:17 +0000 Build-Path: /build/gff2aplot-GWPOkr/gff2aplot-2.0 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.2.37-2+b5), binutils (= 2.45-4), binutils-common (= 2.45-4), binutils-x86-64-linux-gnu (= 2.45-4), bsdextrautils (= 2.41.1-1), bsdutils (= 1:2.41.1-1), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-14 (= 14.3.0-5), cpp-14-x86-64-linux-gnu (= 14.3.0-5), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.25), debianutils (= 5.23.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.3.0-5), g++-14-x86-64-linux-gnu (= 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LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1707131378" +------------------------------------------------------------------------------+ | Package contents Sun, 17 Aug 2025 16:38:18 +0000 | +------------------------------------------------------------------------------+ gff2aplot-dbgsym_2.0-15_amd64.deb --------------------------------- new Debian package, version 2.0. size 24976 bytes: control archive=536 bytes. 375 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: gff2aplot-dbgsym Source: gff2aplot Version: 2.0-15 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 47 Depends: gff2aplot (= 2.0-15) Section: debug Priority: optional Description: debug symbols for gff2aplot Build-Ids: d77c67d5928de9094270c5f7684eb6fb3526c729 drwxr-xr-x root/root 0 2024-02-05 11:09 ./ drwxr-xr-x root/root 0 2024-02-05 11:09 ./usr/ drwxr-xr-x root/root 0 2024-02-05 11:09 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-05 11:09 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Description: pair-wise alignment-plots for genomic sequences in PostScript A program to visualize the alignment of two genomic sequences together with their annotations. From GFF-format input files it produces PostScript figures for that alignment. The following menu lists many features of gff2aplot: * Comprehensive alignment plots for any GFF-feature. Attributes are defined separately so you can modify only whatsoever attributes for a given file or share same customization across different data-sets. * All parameters are set by default within the program, but it can be also fully configured via gff2ps-like flexible customization files. Program can handle several of such files, summarizing all the settings before producing the corresponding figure. Moreover, all customization parameters can be set via command-line switches, which allows users to play with those parameters before adding any to a customization file. * Source order is taken from input files, if you swap file order you can visualize alignment and its annotation with the new input arrangement. * All alignment scores can be visualized in a PiP box below gff2aplot area, using grey-color scale, user-defined color scale or score-dependent gradients. * Scalable fonts, which can also be chosen among the basic PostScript default fonts. Feature and group labels can be rotated to improve readability in both annotation axes. * The program is still defined as a Unix filter so it can handle data from files, redirections and pipes, writing output to standard-output and warnings to standard error. * gff2aplot is able to manage many physical page formats (from A0 to A10, and more -see available page sizes in its manual-), including user-defined ones. This allows, for instance, the generation of poster size genomic maps, or the use of a continuous-paper supporting plotting device, either in portrait or landscape. * You can draw different alignments on same alignment plot and distinguish them by using different colors for each. * Shape dictionary has been expanded, so that further feature shapes are now available (see manual). * Annotation projections through alignment plots (so called ribbons) emulate transparencies via complementary color fill patterns. 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+------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 5244 Build-Time: 7 Distribution: perl-5.42-throwaway Host Architecture: amd64 Install-Time: 7 Job: /srv/debomatic/incoming/gff2aplot_2.0-15.dsc Machine Architecture: amd64 Package: gff2aplot Package-Time: 31 Source-Version: 2.0-15 Space: 5244 Status: successful Version: 2.0-15 -------------------------------------------------------------------------------- Finished at 2025-08-17T16:38:17Z Build needed 00:00:31, 5244k disk space