sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | sprai 0.9.9.23+dfsg1-3 (amd64) Tue, 01 Jul 2025 22:25:32 +0000 | +==============================================================================+ Package: sprai Version: 0.9.9.23+dfsg1-3 Source Version: 0.9.9.23+dfsg1-3 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Tue, 01 Jul 2025 22:25:32 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup sprai_0.9.9.23+dfsg1-3 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup sprai_0.9.9.23+dfsg1-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Tue, 01 Jul 2025 22:25:32 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [213 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2025-07-01-2004.28-F-2025-07-01-2004.28.pdiff [2379 B] Get:4 http://localhost:3142/debian sid/main Sources T-2025-07-01-2004.28-F-2025-07-01-2004.28.pdiff [2379 B] Get:5 http://deb.debian.org/debian unstable InRelease [213 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-07-01-2004.28-F-2025-07-01-2004.28.pdiff [2947 B] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-07-01-2004.28-F-2025-07-01-2004.28.pdiff [2947 B] Fetched 559 kB in 5s (104 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Tue, 01 Jul 2025 22:25:40 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/sprai_0.9.9.23+dfsg1-3.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 01 Jul 2025 22:25:40 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ InRelease Get:2 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ Release [609 B] Ign:3 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ Release.gpg Get:4 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ Sources [600 B] Get:5 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 copy:/build/sprai-6Cf9SV/resolver-OvCA6o/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Preconfiguring packages ... Fetched 10.7 MB in 0s (123 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23091 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures Tue, 01 Jul 2025 22:25:44 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Tue, 01 Jul 2025 22:25:44 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.44-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Tue, 01 Jul 2025 22:25:44 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sprai Binary: sprai Architecture: any Version: 0.9.9.23+dfsg1-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/sprai Vcs-Git: https://salsa.debian.org/med-team/sprai.git Build-Depends: debhelper-compat (= 13) Package-List: sprai deb science optional arch=any Checksums-Sha1: 4c0617d846c40ce0c8e75238e85cd8268dae100f 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz b348a782451fb41a56004b8169731a5948e96ccd 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Checksums-Sha256: b7190784e07c803e465a07b4b3a0ba086b8c82c93878c4e252e8c715d20d22c2 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz d45516177d79a7e4110a542affd51376fbb56e88862a5f54e7e02d6e29358e5d 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Files: 91389cbe7e99874c959933859e76d7bb 60428 sprai_0.9.9.23+dfsg1.orig.tar.xz aa6eb84ab483da9517a1c0d35d734004 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz Dgit: aa333095bd67900d4df8989ea094d9288aad7abb debian archive/debian/0.9.9.23+dfsg1-3 https://git.dgit.debian.org/sprai -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbPhWUUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqoLw/+PqfUk7J+EXvZY7DPymtbKenzZF8m qrzyHNglzCSnGTQmQO0al0G7wnCApIMeAssx7aIyviSgBxHVY6YQJi/qm/v5F5QC 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from debian/patches/series dpkg-source: info: applying libexec.patch dpkg-source: info: applying example-specs.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying no-pwd.patch dpkg-source: info: applying flags.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Tue, 01 Jul 2025 22:25:44 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network sprai_0.9.9.23+dfsg1-3 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network sprai_0.9.9.23+dfsg1-3 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-ef6c2d9f-de73-4ffd-a5d9-43a7233aef7b SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package sprai dpkg-buildpackage: info: source version 0.9.9.23+dfsg1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=makefile dh_auto_clean -O--buildsystem=makefile dh_autoreconf_clean -O--buildsystem=makefile dh_clean -O--buildsystem=makefile dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building sprai using existing ./sprai_0.9.9.23+dfsg1.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building sprai in sprai_0.9.9.23+dfsg1-3.debian.tar.xz dpkg-source: info: building sprai in sprai_0.9.9.23+dfsg1-3.dsc debian/rules binary dh binary --buildsystem=makefile dh_update_autotools_config -O--buildsystem=makefile dh_autoreconf -O--buildsystem=makefile dh_auto_configure -O--buildsystem=makefile dh_auto_build -O--buildsystem=makefile make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o bfmt72s bfmt72s.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o nss2v_v3 nss2v_v3.c bfmt72s.c: In function ‘main’: bfmt72s.c:444:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 444 | fgets(buf+line_length, LBUF + 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nss2v_v3.c: In function ‘get_sam_record’: nss2v_v3.c:471:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 471 | fgets(buf+line_length, buffer_size + 1, in_sam); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o myrealigner myrealigner.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o m52bfmt7 m52bfmt7.c make[1]: Leaving directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_auto_test -O--buildsystem=makefile create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=makefile dh_prep -O--buildsystem=makefile dh_auto_install --destdir=debian/sprai/ -O--buildsystem=makefile make -j2 install DESTDIR=/build/sprai-6Cf9SV/sprai-0.9.9.23\+dfsg1/debian/sprai AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' chmod 766 bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl mkdir -vp /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ mkdir: created directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr' mkdir: created directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/' cp -p bfmt72s nss2v_v3 myrealigner m52bfmt7 ca_ikki_v5.pl ezez4makefile_v4.pl ezez4qsub_vx1.pl ezez_vx1.pl dumbbell_filter.pl fa2fq.pl fq2fa.pl fq2idfq.pl fqfilt.pl get_top_20x_fa.pl partition_fa.pl get_target_fasta_records.pl dfq2fq_v2.pl extract_fq.pl bfmtx2m4.pl check_redundancy.pl check_circularity.pl /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin/ make[1]: Leaving directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' mkdir -p /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/lib/sprai cd /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && mv * ../lib/sprai/ \ && mv ../lib/sprai/ezez* . cd /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1/debian/sprai/usr/bin \ && \ for script in *; \ do \ mv $script $(basename $script .pl) \ && ln -sf $(basename $script .pl) $script; \ done dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_installdocs -O--buildsystem=makefile debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_installchangelogs doc/_build/html/_sources/index.txt make[1]: Leaving directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_installexamples -O--buildsystem=makefile debian/rules override_dh_installman make[1]: Entering directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_installman --language=C make[1]: Leaving directory '/build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1' dh_installsystemduser -O--buildsystem=makefile dh_perl -O--buildsystem=makefile dh_link -O--buildsystem=makefile dh_strip_nondeterminism -O--buildsystem=makefile dh_compress -O--buildsystem=makefile dh_fixperms -O--buildsystem=makefile dh_missing -O--buildsystem=makefile dh_dwz -a -O--buildsystem=makefile dh_strip -a -O--buildsystem=makefile dh_makeshlibs -a -O--buildsystem=makefile dh_shlibdeps -a -O--buildsystem=makefile dh_installdeb -O--buildsystem=makefile dh_gencontrol -O--buildsystem=makefile dh_md5sums -O--buildsystem=makefile dh_builddeb -O--buildsystem=makefile dpkg-deb: building package 'sprai' in '../sprai_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-deb: building package 'sprai-dbgsym' in '../sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb'. dpkg-genbuildinfo -O../sprai_0.9.9.23+dfsg1-3_amd64.buildinfo dpkg-genchanges -O../sprai_0.9.9.23+dfsg1-3_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-07-01T22:25:52Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 01 Jul 2025 22:25:52 +0000 | +------------------------------------------------------------------------------+ sprai_0.9.9.23+dfsg1-3_amd64.changes: ------------------------------------- Format: 1.8 Date: Wed, 28 Aug 2024 21:31:44 +0200 Source: sprai Binary: sprai sprai-dbgsym Architecture: source amd64 Version: 0.9.9.23+dfsg1-3 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: sprai - single-pass sequencing read accuracy improver Closes: 1047125 Changes: sprai (0.9.9.23+dfsg1-3) unstable; urgency=medium . * d/clean: new: fix double source build failure. (Closes: #1047125) * d/rules: activate hardwning flags. * flags.patch: propagate hardening flags to package targets. The patch is renamed from cflags.patch for naming consistency. * d/s/lintian-overrides: hide more unactionable hints. * d/control: bump to debhelper-compat 13. * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. Checksums-Sha1: b46ed27dd00f248aba431f8c3b6c2bdf8db6e62e 1152 sprai_0.9.9.23+dfsg1-3.dsc 92f5decf99280ecbe285ebec207e7cff298eb2b0 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz 199fb14151cfeecb310e095335a7473458bb326e 73260 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 9a8aad789cb0fa5367b680d8999e8c2f8c994deb 5320 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo e426c987777c2e767e2e262336f1a82ffb049776 1512760 sprai_0.9.9.23+dfsg1-3_amd64.deb Checksums-Sha256: 07715183512208cc33f652f941ccca8ce770addab29d448b79ac330556ef4482 1152 sprai_0.9.9.23+dfsg1-3.dsc e3b9b24fef332b500133ccd3cc31622ab112ba5d2b16af86e2f8b4abd00c2243 1446952 sprai_0.9.9.23+dfsg1-3.debian.tar.xz 489d8354fec99384b3465965cc6df656f15a7fc66a0a9e6bba620af3f0113989 73260 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 1fec09f40ed06f12d45c93dda7bced1bd17ffb054cdaa842e7258eb4b8d19762 5320 sprai_0.9.9.23+dfsg1-3_amd64.buildinfo 1f679a4aa769e143f07bd8ae28960019af352f1f5b9319c62251d40a75f49260 1512760 sprai_0.9.9.23+dfsg1-3_amd64.deb Files: 59366d520788c59102995dbd6504326f 1152 science optional sprai_0.9.9.23+dfsg1-3.dsc 301a284d256f30cf9ec867724143bc74 1446952 science optional sprai_0.9.9.23+dfsg1-3.debian.tar.xz 232acd0025c734cb2a7a85cd4f80122f 73260 debug optional sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 9d9b52e2650a3511e40f269b293aff96 5320 science optional sprai_0.9.9.23+dfsg1-3_amd64.buildinfo 9192a4b779b3c359b4b861682d3c456d 1512760 science optional sprai_0.9.9.23+dfsg1-3_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo Tue, 01 Jul 2025 22:25:52 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: sprai Binary: sprai sprai-dbgsym Architecture: amd64 source Version: 0.9.9.23+dfsg1-3 Checksums-Md5: 59366d520788c59102995dbd6504326f 1152 sprai_0.9.9.23+dfsg1-3.dsc 232acd0025c734cb2a7a85cd4f80122f 73260 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 9192a4b779b3c359b4b861682d3c456d 1512760 sprai_0.9.9.23+dfsg1-3_amd64.deb Checksums-Sha1: b46ed27dd00f248aba431f8c3b6c2bdf8db6e62e 1152 sprai_0.9.9.23+dfsg1-3.dsc 199fb14151cfeecb310e095335a7473458bb326e 73260 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb e426c987777c2e767e2e262336f1a82ffb049776 1512760 sprai_0.9.9.23+dfsg1-3_amd64.deb Checksums-Sha256: 07715183512208cc33f652f941ccca8ce770addab29d448b79ac330556ef4482 1152 sprai_0.9.9.23+dfsg1-3.dsc 489d8354fec99384b3465965cc6df656f15a7fc66a0a9e6bba620af3f0113989 73260 sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb 1f679a4aa769e143f07bd8ae28960019af352f1f5b9319c62251d40a75f49260 1512760 sprai_0.9.9.23+dfsg1-3_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 01 Jul 2025 22:25:52 +0000 Build-Path: /build/sprai-6Cf9SV/sprai-0.9.9.23+dfsg1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhwasan0 (= 14.2.0-19), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1724873504" +------------------------------------------------------------------------------+ | Package contents Tue, 01 Jul 2025 22:25:52 +0000 | +------------------------------------------------------------------------------+ sprai-dbgsym_0.9.9.23+dfsg1-3_amd64.deb --------------------------------------- new Debian package, version 2.0. size 73260 bytes: control archive=748 bytes. 503 bytes, 12 lines control 506 bytes, 5 lines md5sums Package: sprai-dbgsym Source: sprai Version: 0.9.9.23+dfsg1-3 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 136 Depends: sprai (= 0.9.9.23+dfsg1-3) Section: debug Priority: optional Description: debug symbols for sprai Build-Ids: 43ca8d530ea53140c6fe3174bb3a4e20023d2d03 be51eee1386ea6d3c873f09ca56ad3e4baab04db ca6538492b09d38a2a6286a27c7f21d8f4eeb144 e279d96a7c61f69330bebad059f628a9eeb6ff4f drwxr-xr-x root/root 0 2024-08-28 19:31 ./ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.build-id/43/ -rw-r--r-- root/root 13296 2024-08-28 19:31 ./usr/lib/debug/.build-id/43/ca8d530ea53140c6fe3174bb3a4e20023d2d03.debug drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.build-id/be/ -rw-r--r-- root/root 28328 2024-08-28 19:31 ./usr/lib/debug/.build-id/be/51eee1386ea6d3c873f09ca56ad3e4baab04db.debug drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.build-id/ca/ -rw-r--r-- root/root 38512 2024-08-28 19:31 ./usr/lib/debug/.build-id/ca/6538492b09d38a2a6286a27c7f21d8f4eeb144.debug drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.build-id/e2/ -rw-r--r-- root/root 39008 2024-08-28 19:31 ./usr/lib/debug/.build-id/e2/79d96a7c61f69330bebad059f628a9eeb6ff4f.debug drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 2896 2024-08-28 19:31 ./usr/lib/debug/.dwz/x86_64-linux-gnu/sprai.debug drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-08-28 19:31 ./usr/share/doc/sprai-dbgsym -> sprai sprai_0.9.9.23+dfsg1-3_amd64.deb -------------------------------- new Debian package, version 2.0. size 1512760 bytes: control archive=1836 bytes. 932 bytes, 18 lines control 2569 bytes, 39 lines md5sums Package: sprai Version: 0.9.9.23+dfsg1-3 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 1713 Depends: libc6 (>= 2.34), perl:any, ncbi-blast+, time Suggests: pbh5tools, pbgenomicconsensus, pbalign, make Section: science Priority: optional Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/ Description: single-pass sequencing read accuracy improver Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction. drwxr-xr-x root/root 0 2024-08-28 19:31 ./ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/bin/ -rwxr-xr-x root/root 30466 2024-08-28 19:31 ./usr/bin/ezez4makefile_v4 lrwxrwxrwx root/root 0 2024-08-28 19:31 ./usr/bin/ezez4makefile_v4.pl -> ezez4makefile_v4 -rwxr-xr-x root/root 44130 2024-08-28 19:31 ./usr/bin/ezez4qsub_vx1 lrwxrwxrwx root/root 0 2024-08-28 19:31 ./usr/bin/ezez4qsub_vx1.pl -> ezez4qsub_vx1 -rwxr-xr-x root/root 20445 2024-08-28 19:31 ./usr/bin/ezez_vx1 lrwxrwxrwx root/root 0 2024-08-28 19:31 ./usr/bin/ezez_vx1.pl -> ezez_vx1 drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/lib/sprai/ -rwxr-xr-x root/root 22784 2024-08-28 19:31 ./usr/lib/sprai/bfmt72s -rwxr-xr-x root/root 1819 2013-07-01 03:19 ./usr/lib/sprai/bfmtx2m4.pl -rwxr-xr-x root/root 5690 2016-04-15 03:55 ./usr/lib/sprai/ca_ikki_v5.pl -rwxr-xr-x root/root 6754 2024-08-28 19:31 ./usr/lib/sprai/check_circularity.pl -rwxr-xr-x root/root 2256 2024-08-28 19:31 ./usr/lib/sprai/check_redundancy.pl -rwxr-xr-x root/root 7288 2014-08-30 05:46 ./usr/lib/sprai/dfq2fq_v2.pl -rwxr-xr-x root/root 3172 2017-02-13 01:11 ./usr/lib/sprai/dumbbell_filter.pl -rwxr-xr-x root/root 3089 2013-07-01 03:19 ./usr/lib/sprai/extract_fq.pl -rwxr-xr-x root/root 3787 2014-08-30 05:46 ./usr/lib/sprai/fa2fq.pl -rwxr-xr-x root/root 946 2013-05-17 06:31 ./usr/lib/sprai/fq2fa.pl -rwxr-xr-x root/root 3115 2014-08-30 05:46 ./usr/lib/sprai/fq2idfq.pl -rwxr-xr-x root/root 911 2014-08-30 05:46 ./usr/lib/sprai/fqfilt.pl -rwxr-xr-x root/root 1946 2013-07-01 03:19 ./usr/lib/sprai/get_target_fasta_records.pl -rwxr-xr-x root/root 8353 2014-08-30 05:46 ./usr/lib/sprai/get_top_20x_fa.pl -rwxr-xr-x root/root 14576 2024-08-28 19:31 ./usr/lib/sprai/m52bfmt7 -rwxr-xr-x root/root 31000 2024-08-28 19:31 ./usr/lib/sprai/myrealigner -rwxr-xr-x root/root 30960 2024-08-28 19:31 ./usr/lib/sprai/nss2v_v3 -rwxr-xr-x root/root 3187 2014-08-30 05:46 ./usr/lib/sprai/partition_fa.pl drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/doc/sprai/ -rw-r--r-- root/root 343 2017-01-14 02:55 ./usr/share/doc/sprai/Contact.txt -rw-r--r-- root/root 3214 2013-11-19 03:37 ./usr/share/doc/sprai/FAQ.txt -rw-r--r-- root/root 433 2024-08-28 19:31 ./usr/share/doc/sprai/README.Debian -rw-r--r-- root/root 8239 2016-06-22 09:21 ./usr/share/doc/sprai/README.txt.gz -rw-r--r-- root/root 956 2024-08-28 19:31 ./usr/share/doc/sprai/changelog.Debian.gz -rw-r--r-- root/root 1517 2017-01-14 02:55 ./usr/share/doc/sprai/changelog.gz -rw-r--r-- root/root 3587 2024-08-28 19:31 ./usr/share/doc/sprai/copyright drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/doc/sprai/examples/ -rw-r--r-- root/root 4761 2016-04-15 04:01 ./usr/share/doc/sprai/examples/Example.txt -rw-r--r-- root/root 2197 2024-08-28 19:31 ./usr/share/doc/sprai/examples/ec.spec -rw-r--r-- root/root 1438028 2024-08-28 19:31 ./usr/share/doc/sprai/examples/pacbio.filtered_subreads.fasta.gz -rw-r--r-- root/root 2696 2014-08-30 05:46 ./usr/share/doc/sprai/examples/pbasm.spec drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/man/ drwxr-xr-x root/root 0 2024-08-28 19:31 ./usr/share/man/man1/ -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez4makefile_v4.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez4makefile_v4.pl.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez4qsub_vx1.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez4qsub_vx1.pl.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez_vx1.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/ezez_vx1.pl.1.gz -rw-r--r-- root/root 755 2024-08-28 19:31 ./usr/share/man/man1/sprai.1.gz +------------------------------------------------------------------------------+ | Post Build Tue, 01 Jul 2025 22:25:53 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Tue, 01 Jul 2025 22:25:53 +0000 | +------------------------------------------------------------------------------+ Purging /build/sprai-6Cf9SV Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Tue, 01 Jul 2025 22:25:53 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 7384 Build-Time: 8 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/sprai_0.9.9.23+dfsg1-3.dsc Machine Architecture: amd64 Package: sprai Package-Time: 20 Source-Version: 0.9.9.23+dfsg1-3 Space: 7384 Status: successful Version: 0.9.9.23+dfsg1-3 -------------------------------------------------------------------------------- Finished at 2025-07-01T22:25:52Z Build needed 00:00:20, 7384k disk space