sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | pique 1.1-1 (amd64) Tue, 01 Jul 2025 15:25:19 +0000 | +==============================================================================+ Package: pique Version: 1.1-1 Source Version: 1.1-1 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Tue, 01 Jul 2025 15:25:20 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup pique_1.1-1 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup pique_1.1-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Tue, 01 Jul 2025 15:25:20 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [213 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [3719 B] Get:4 http://localhost:3142/debian sid/main Sources T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [3719 B] Get:5 http://deb.debian.org/debian unstable InRelease [213 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [2354 B] Get:7 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-07-01-1404.57-F-2025-07-01-1404.57.pdiff [2354 B] Fetched 560 kB in 6s (101 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Tue, 01 Jul 2025 15:25:27 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/pique_1.1-1.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 01 Jul 2025 15:25:28 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/pique-pHok0v/resolver-CQLKIz/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ InRelease Get:2 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ Release [609 B] Ign:3 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ Release.gpg Get:4 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ Sources [600 B] Get:5 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 copy:/build/pique-pHok0v/resolver-CQLKIz/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [856 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Preconfiguring packages ... Fetched 10.7 MB in 0s (129 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23091 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures Tue, 01 Jul 2025 15:25:32 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Tue, 01 Jul 2025 15:25:32 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.44-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Tue, 01 Jul 2025 15:25:32 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pique Binary: pique, pique-doc Architecture: all Version: 1.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/tony-travis/PIQUE/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/pique Vcs-Git: https://salsa.debian.org/med-team/pique.git Testsuite: autopkgtest Testsuite-Triggers: r-cran-hmisc, wget Build-Depends: debhelper-compat (= 13) Package-List: pique deb science optional arch=all pique-doc deb doc optional arch=all Checksums-Sha1: c24e918d92f93dd705d00740d0663b23b5b64604 3607037 pique_1.1.orig.tar.gz 9d960a19afa15f60410c35995767a5f710bcf167 5876 pique_1.1-1.debian.tar.xz Checksums-Sha256: 723ebac4796c10f69e1818303f0d321fb1ea4e0eab96a34c61431ca34be6e834 3607037 pique_1.1.orig.tar.gz 04338283081e112b27b50b4f90817670a1177db6c88a8eeee06efef8d873af78 5876 pique_1.1-1.debian.tar.xz Files: 97072144854ce135c8dd7a85cbd545bb 3607037 pique_1.1.orig.tar.gz b555100cd96789faad9dc148fb285957 5876 pique_1.1-1.debian.tar.xz Dgit: acadaffd97933863a15382eb3b767563b4ab2b6b debian archive/debian/1.1-1 https://git.dgit.debian.org/pique -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmgTNJ8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqzOw/+Ln72pX1feJSJZ8imBfHPr9l/kj/D VIMTBU8RW5MJZ9xcS43sGZQC/449QrOd3If50/RtTu7UxtM8F96Exh0CMlZ5JCLm fPunPaPkul4VYsUpkID+3NAsK6s/kk0MO8fjYZRzQdKYlamcTH++dRU1xxuk3MuC 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---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Tue, 01 Jul 2025 15:25:33 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network pique_1.1-1 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network pique_1.1-1 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/pique-pHok0v/pique-1.1 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-1d4d6e3a-d68f-4ece-87d4-503a17b4f569 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package pique dpkg-buildpackage: info: source version 1.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j2 clean make[1]: Entering directory '/build/pique-pHok0v/pique-1.1' rm -f *.log make[1]: Leaving directory '/build/pique-pHok0v/pique-1.1' dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building pique using existing ./pique_1.1.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building pique in pique_1.1-1.debian.tar.xz dpkg-source: info: building pique in pique_1.1-1.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/pique-pHok0v/pique-1.1' echo "Nothing to build. Upstream Makefile just fetches and installs dependencies" Nothing to build. Upstream Makefile just fetches and installs dependencies make[1]: Leaving directory '/build/pique-pHok0v/pique-1.1' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/pique-pHok0v/pique-1.1' echo "Nothing to install. Upstream Makefile just fetches and installs dependencies" Nothing to install. Upstream Makefile just fetches and installs dependencies make[1]: Leaving directory '/build/pique-pHok0v/pique-1.1' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/pique-pHok0v/pique-1.1' dh_fixperms find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/pique-pHok0v/pique-1.1' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pique-doc' in '../pique-doc_1.1-1_all.deb'. dpkg-deb: building package 'pique' in '../pique_1.1-1_all.deb'. dpkg-genbuildinfo -O../pique_1.1-1_amd64.buildinfo dpkg-genchanges -O../pique_1.1-1_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: full upload (original source is included) -------------------------------------------------------------------------------- Build finished at 2025-07-01T15:25:42Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 01 Jul 2025 15:25:42 +0000 | +------------------------------------------------------------------------------+ pique_1.1-1_amd64.changes: -------------------------- Format: 1.8 Date: Thu, 01 May 2025 09:32:27 +0200 Source: pique Binary: pique pique-doc Architecture: source all Version: 1.1-1 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: pique - software pipeline for performing genome wide association studies pique-doc - software pipeline for performing genome wide association studies Closes: 1104275 Changes: pique (1.1-1) unstable; urgency=medium . * Team upload. * New upstream version 1.1 (Closes: #1104275) * d/control: declare compliance to standards version 4.7.2. * d/control: pique depends on plink1.9. * d/t/run-unit-test: explicitly make all tests. * smartpca_fix.diff: delete: upstream modified the affected logic. * adjust-GWAS_manhattanplots.patch: new: fix R script invocation. * d/copyright: comment about the test data set. 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Checksums-Sha1: 1765b8be972055bf07c5272547486960fca56751 1097 pique_1.1-1.dsc 8cba4a9e33d051b61c39a6eff929c034db6a9431 3520664 pique-doc_1.1-1_all.deb b5439af3e36e888fb411bfcf17d17efb57a889ee 21300 pique_1.1-1_all.deb Checksums-Sha256: ade6ff0f394c8a2a54d36f011c192afae3ba317f466e10f1e9c8f969849f5f58 1097 pique_1.1-1.dsc d659fb42b242095e06655f27b5a47d35762348a12b43ad8ad052063c97de88a3 3520664 pique-doc_1.1-1_all.deb 8b7f9783f9bca3562b9df4f79fa81cca023fabc868b2d644385d41926157a33a 21300 pique_1.1-1_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 01 Jul 2025 15:25:41 +0000 Build-Path: /build/pique-pHok0v/pique-1.1 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhwasan0 (= 14.2.0-19), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1746084747" +------------------------------------------------------------------------------+ | Package contents Tue, 01 Jul 2025 15:25:42 +0000 | +------------------------------------------------------------------------------+ pique-doc_1.1-1_all.deb ----------------------- new Debian package, version 2.0. size 3520664 bytes: control archive=1440 bytes. 1529 bytes, 30 lines control 924 bytes, 11 lines md5sums Package: pique-doc Source: pique Version: 1.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 3698 Enhances: pique Section: doc Priority: optional Multi-Arch: foreign Homepage: https://github.com/tony-travis/PIQUE/ Description: software pipeline for performing genome wide association studies (docs) PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ‘convenience’ wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the need to be familiar with all of the software tools used to generate the required EMMAX input files. PIQUE will also perform a number of quality control steps prior to running EMMAX, ensuring that the various input data files are in the correct format. PIQUE proceeds in two main stages although there are multiple entry and exit points from which the pipeline can be run. The first stage consists of running the “pique-input” program, which can read genotype and phenotype information in several different formats and generates all the necessary input files required to run EMMAX. The second step in the pipeline uses the “pique-run” program to actually run EMMAX using the files generated by “pique-input” (or pre-existing user-supplied input files) to perform the GWAS and output the analysis summary files. . This package contains the documentation as well as example data. drwxr-xr-x root/root 0 2025-05-01 07:32 ./ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/pique-doc/ -rw-r--r-- root/root 851 2025-05-01 07:32 ./usr/share/doc/pique-doc/changelog.Debian.gz -rw-r--r-- root/root 1647 2025-05-01 07:32 ./usr/share/doc/pique-doc/copyright drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/pique/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/pique/examples/ -rw-r--r-- root/root 2522 2025-04-30 09:34 ./usr/share/doc/pique/examples/Makefile -rw-r--r-- root/root 1609332 2025-04-30 09:34 ./usr/share/doc/pique/examples/RiceDiversity_44K_Genotypes_PLINK.tar.xz -rw-r--r-- root/root 65469 2025-04-30 09:34 ./usr/share/doc/pique/examples/phenotype_reduced44K_all.txt -rw-r--r-- root/root 130582 2025-04-30 09:34 ./usr/share/doc/pique/examples/phenotype_reduced44K_subg.txt -rw-r--r-- root/root 66423 2025-04-30 09:34 ./usr/share/doc/pique/examples/phenotype_reduced44K_subg_all.txt -rw-r--r-- root/root 10686 2025-04-30 09:34 ./usr/share/doc/pique/examples/phenotype_reduced44K_subg_test.txt -rw-r--r-- root/root 252 2025-04-30 09:34 ./usr/share/doc/pique/examples/plot_files.txt lrwxrwxrwx root/root 0 2025-05-01 07:32 ./usr/share/doc/pique/examples/rice_phenotype.txt -> phenotype_reduced44K_all.txt lrwxrwxrwx root/root 0 2025-05-01 07:32 ./usr/share/doc/pique/examples/rice_phenotype_group.txt -> phenotype_reduced44K_subg_all.txt -rw-r--r-- root/root 29739 2025-04-30 09:34 ./usr/share/doc/pique/pique_manual.odt -rw-r--r-- root/root 1853689 2025-04-30 09:34 ./usr/share/doc/pique/pique_tutorial.odt pique_1.1-1_all.deb ------------------- new Debian package, version 2.0. size 21300 bytes: control archive=1472 bytes. 1608 bytes, 26 lines control 717 bytes, 11 lines md5sums Package: pique Version: 1.1-1 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 88 Depends: perl:any, r-base-core, emmax, plink1.9, eigensoft, libreadonly-perl, libparallel-forkmanager-perl, libfile-slurp-perl, r-cran-getopt, r-cran-forecast, r-bioc-multtest, r-cran-optparse, r-cran-uroot Section: science Priority: optional Homepage: https://github.com/tony-travis/PIQUE/ Description: software pipeline for performing genome wide association studies PIQUE is a software pipeline for performing genome wide association studies (GWAS). The main function of PIQUE is to provide ‘convenience’ wrappers that allow users to perform GWAS using the popular program EMMAX (Kang et al., 2010) without the need to be familiar with all of the software tools used to generate the required EMMAX input files. PIQUE will also perform a number of quality control steps prior to running EMMAX, ensuring that the various input data files are in the correct format. PIQUE proceeds in two main stages although there are multiple entry and exit points from which the pipeline can be run. The first stage consists of running the “pique-input” program, which can read genotype and phenotype information in several different formats and generates all the necessary input files required to run EMMAX. The second step in the pipeline uses the “pique-run” program to actually run EMMAX using the files generated by “pique-input” (or pre-existing user-supplied input files) to perform the GWAS and output the analysis summary files. drwxr-xr-x root/root 0 2025-05-01 07:32 ./ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/bin/ -rwxr-xr-x root/root 955 2025-04-30 09:34 ./usr/bin/GWAS_boxcox -rwxr-xr-x root/root 5356 2025-05-01 07:32 ./usr/bin/GWAS_manhattanplots -rwxr-xr-x root/root 33910 2025-04-30 09:34 ./usr/bin/pique-input -rwxr-xr-x root/root 13578 2025-04-30 09:34 ./usr/bin/pique-run drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/lib/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/lib/R/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/lib/R/site-library/pique/ -rw-r--r-- root/root 12766 2025-04-30 09:34 ./usr/lib/R/site-library/pique/GWAS_manhattanplots.R drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/doc/pique/ -rw-r--r-- root/root 309 2025-05-01 07:32 ./usr/share/doc/pique/README.test -rw-r--r-- root/root 851 2025-05-01 07:32 ./usr/share/doc/pique/changelog.Debian.gz -rw-r--r-- root/root 1647 2025-05-01 07:32 ./usr/share/doc/pique/copyright -rw-r--r-- root/root 338 2025-05-01 07:32 ./usr/share/doc/pique/run-unit-test drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-01 07:32 ./usr/share/man/man1/ -rw-r--r-- root/root 935 2025-05-01 07:32 ./usr/share/man/man1/pique-input.1.gz -rw-r--r-- root/root 680 2025-05-01 07:32 ./usr/share/man/man1/pique-run.1.gz +------------------------------------------------------------------------------+ | Post Build Tue, 01 Jul 2025 15:25:42 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Tue, 01 Jul 2025 15:25:42 +0000 | +------------------------------------------------------------------------------+ Purging /build/pique-pHok0v Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Tue, 01 Jul 2025 15:25:43 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 14980 Build-Time: 9 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/pique_1.1-1.dsc Machine Architecture: amd64 Package: pique Package-Time: 23 Source-Version: 1.1-1 Space: 14980 Status: successful Version: 1.1-1 -------------------------------------------------------------------------------- Finished at 2025-07-01T15:25:42Z Build needed 00:00:23, 14980k disk space