sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | libbio-procedural-perl 1.7.4-5 (amd64) Mon, 30 Jun 2025 20:00:04 +0000 | +==============================================================================+ Package: libbio-procedural-perl Version: 1.7.4-5 Source Version: 1.7.4-5 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 30 Jun 2025 20:00:04 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-procedural-perl_1.7.4-5 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-procedural-perl_1.7.4-5 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 30 Jun 2025 20:00:04 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://localhost:3142/debian sid InRelease Hit:3 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 30 Jun 2025 20:00:06 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-procedural-perl_1.7.4-5.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 30 Jun 2025 20:00:06 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libtest-most-perl, libwww-perl, libbio-tools-run-remoteblast-perl, libbio-db-swissprot-perl, libbio-db-refseq-perl, libbio-db-ncbihelper-perl, libbio-db-embl-perl, libtest-requiresinternet-perl, perl Filtered Build-Depends: debhelper-compat (= 13), build-essential, libbio-perl-perl, libtest-most-perl, libwww-perl, libbio-tools-run-remoteblast-perl, libbio-db-swissprot-perl, libbio-db-refseq-perl, libbio-db-ncbihelper-perl, libbio-db-embl-perl, libtest-requiresinternet-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ InRelease Get:2 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ Release [609 B] Ign:3 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ Release.gpg Get:4 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ Sources [839 B] Get:5 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ Packages [858 B] Fetched 2306 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-embl-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-swissprot-perl libbio-perl-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libcache-cache-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl liberror-perl libexception-class-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libproc2-0 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-charwidth-perl libtext-diff-perl libtext-wrapi18n-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf procps sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl libunicode-map8-perl libunicode-string-perl xml-twig-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-libxml-perl libcgi-fast-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libtext-iconv-perl libtie-ixhash-perl libxml-xpathengine-perl | libxml-xpath-perl libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-asn1-entrezgene-perl libbio-cluster-perl libbio-db-embl-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-swissprot-perl libbio-perl-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libcache-cache-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl liberror-perl libexception-class-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl libipc-sharelite-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libproc2-0 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-requiresinternet-perl libtest-warn-perl libtext-charwidth-perl libtext-diff-perl libtext-wrapi18n-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl libxml-twig-perl libxml-writer-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf procps sbuild-build-depends-main-dummy sensible-utils ucf 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB/19.5 MB of archives. After this operation, 65.2 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libtext-charwidth-perl amd64 0.04-11+b5 [9444 B] Get:2 copy:/build/libbio-procedural-perl-2lypbI/resolver-An7YEZ/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B] Get:3 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB] Get:4 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.47-1+b2 [13.8 kB] Get:5 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [339 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get:9 file:/srv/reprepro perl-5.40/main amd64 libxml-parser-perl amd64 2.47-1+b4 [198 kB] Get:10 file:/srv/reprepro perl-5.40/main amd64 libipc-sharelite-perl amd64 0.17-5+b4 [23.1 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:24 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:36 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:57 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:61 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libxml-twig-perl all 1:3.52-3 [177 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libxml-writer-perl all 0.900-2 [26.8 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:71 http://deb.debian.org/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:72 http://deb.debian.org/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:73 http://deb.debian.org/debian unstable/main amd64 libbio-cluster-perl all 1.7.3-6 [53.3 kB] Get:74 http://deb.debian.org/debian unstable/main amd64 libbio-asn1-entrezgene-perl all 1.730-3 [46.3 kB] Get:75 http://deb.debian.org/debian unstable/main amd64 libbio-db-embl-perl all 1.7.4-4 [7820 B] Get:76 http://deb.debian.org/debian unstable/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get:77 http://deb.debian.org/debian unstable/main amd64 libcache-cache-perl all 1.08-3 [63.4 kB] Get:78 http://deb.debian.org/debian unstable/main amd64 libcgi-pm-perl all 4.68-1 [217 kB] Get:79 http://deb.debian.org/debian unstable/main amd64 libbio-db-ncbihelper-perl all 1.7.8-1 [58.5 kB] Get:80 http://deb.debian.org/debian unstable/main amd64 libbio-db-refseq-perl all 1.7.4-2 [7400 B] Get:81 http://deb.debian.org/debian unstable/main amd64 libbio-db-swissprot-perl all 1.7.4-2 [11.9 kB] Get:82 http://deb.debian.org/debian unstable/main amd64 libbio-tools-run-remoteblast-perl all 1.7.3-3 [17.5 kB] Get:83 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:84 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:85 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:86 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:87 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:88 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:89 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:90 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:91 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:92 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:93 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:94 http://deb.debian.org/debian unstable/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Preconfiguring packages ... Fetched 18.8 MB in 1s (26.2 MB/s) Selecting previously unselected package libtext-charwidth-perl:amd64. (Reading database ... 23091 files and directories currently installed.) Preparing to unpack .../00-libtext-charwidth-perl_0.04-11+b5_amd64.deb ... Unpacking libtext-charwidth-perl:amd64 (0.04-11+b5) ... Selecting previously unselected package netbase. Preparing to unpack .../01-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../02-libproc2-0_2%3a4.0.4-8_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../03-procps_2%3a4.0.4-8_amd64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../04-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. 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Preparing to unpack .../92-libtest-requiresinternet-perl_0.05-4_all.deb ... Unpacking libtest-requiresinternet-perl (0.05-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../93-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b5) ... Setting up bsdextrautils (2.41-5) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libipc-sharelite-perl (0.17-5+b4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up liberror-perl (0.17030-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libproc2-0:amd64 (2:4.0.4-8) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.0-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libcache-cache-perl (1.08-3) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0052) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcgi-pm-perl (4.68-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.24.2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libbio-db-refseq-perl (1.7.4-2) ... Setting up libbio-tools-run-remoteblast-perl (1.7.3-3) ... Setting up libbio-db-swissprot-perl (1.7.4-2) ... Setting up libbio-db-embl-perl (1.7.4-4) ... Setting up libxml-parser-perl (2.47-1+b4) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Setting up libbio-cluster-perl (1.7.3-6) ... Setting up libbio-asn1-entrezgene-perl (1.730-3) ... Setting up libbio-db-ncbihelper-perl (1.7.8-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Mon, 30 Jun 2025 20:00:16 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 30 Jun 2025 20:00:16 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.44-3 libbio-asn1-entrezgene-perl_1.730-3 libbio-cluster-perl_1.7.3-6 libbio-db-embl-perl_1.7.4-4 libbio-db-ncbihelper-perl_1.7.8-1 libbio-db-refseq-perl_1.7.4-2 libbio-db-swissprot-perl_1.7.4-2 libbio-perl-perl_1.7.8-1 libbio-tools-run-remoteblast-perl_1.7.3-3 libbio-variation-perl_1.7.5-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcache-cache-perl_1.08-3 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcapture-tiny-perl_0.50-1 libcc1-0_14.2.0-19 libcgi-pm-perl_4.68-1 libclass-data-inheritable-perl_0.10-1 libclone-perl_0.47-1+b2 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libencode-locale-perl_1.05-3 liberror-perl_0.17030-1 libexception-class-perl_1.45-1 libexpat1_2.7.1-1 libffi8_3.4.8-2 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libhogweed6t64_3.10.1-1 libhtml-parser-perl_3.83-1+b3 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libipc-sharelite-perl_0.17-5+b4 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-3+b1 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libproc2-0_2:4.0.4-8 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsub-uplevel-perl_0.2800-3 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtest-deep-perl_1.205-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-requiresinternet-perl_0.05-4 libtest-warn-perl_0.37-2 libtext-charwidth-perl_0.04-11+b5 libtext-diff-perl_1.45-2 libtext-wrapi18n-perl_0.06-10 libtimedate-perl_2.3300-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 liburi-perl_5.30-1 libuuid1_2.41-5 libwww-perl_6.78-1 libwww-robotrules-perl_6.02-1 libxml-namespacesupport-perl_1.12-2 libxml-parser-perl_2.47-1+b4 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-4 libxml-twig-perl_1:3.52-3 libxml-writer-perl_0.900-2 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl_3.5.0-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 perl-openssl-defaults_7+b2 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-8 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 ucf_3.0052 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 30 Jun 2025 20:00:16 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-procedural-perl Binary: libbio-procedural-perl Architecture: all Version: 1.7.4-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Procedural Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-procedural-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-procedural-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libbio-perl-perl, libtest-most-perl, libwww-perl, libbio-tools-run-remoteblast-perl, libbio-db-swissprot-perl, libbio-db-refseq-perl, libbio-db-ncbihelper-perl, libbio-db-embl-perl, libtest-requiresinternet-perl, perl Package-List: libbio-procedural-perl deb perl optional arch=all Checksums-Sha1: 60fd021d58399de2c89f6b727f720611b98462b6 25155 libbio-procedural-perl_1.7.4.orig.tar.gz 265d8dc19dab826aaaf2aabea616fbe3db459c3d 2384 libbio-procedural-perl_1.7.4-5.debian.tar.xz Checksums-Sha256: d2bd9cfbb091eee2d80ed6cf812ac3813b1c8a1aaca20671037f5f225d31d1da 25155 libbio-procedural-perl_1.7.4.orig.tar.gz 5385da4795897bbe9388de6031b76b1ecec77d53c243832a1f31d03ecec0e5f4 2384 libbio-procedural-perl_1.7.4-5.debian.tar.xz Files: 4c1bfd806d4a58c251919bc681c0f43b 25155 libbio-procedural-perl_1.7.4.orig.tar.gz 0a3c3d5f939638638f4f7ac99343c561 2384 libbio-procedural-perl_1.7.4-5.debian.tar.xz Dgit: 12b3c89043085cbe52dc10d5b5e67c7439d92cc7 debian archive/debian/1.7.4-5 https://git.dgit.debian.org/libbio-procedural-perl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmf2TW8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqpyQ//ch6GdUzW5FaRJIqaxQBSM+0wxkt1 Fpo08gKgfEK+/bGmcs7qEzH1F2XKWRkk9PLz5/fo47FR7qFZDF6VK74fChoZ2dw8 PyltdKnNTjQRdsLtJdJqTqtOXtNS/nG1AvrxX0LjZOjgyJSYcDcJvP5TLGGrUvMX 0tfOzAkUHHReT01rbEfFs4Ov1Ggxt1ST63EQ4fo7/6jBmaExo/e1YpMd3az6TTY0 xrpxSrYdp7+Pi8AGo5NTl0lZHtYarlwW82kIbf4LDSFhja8pynj59KJQ4TwhvDMz DB1z1m2sArhPYoTEy9sCNK+Q8C3EcfmJfInc2/uLCTs+6XmncF++btuv4NF/Rzqn DJAbLrk/K42zDTd2iqu0q2mx6gqWp+d/6PTwVU1PgXqpXSwC4cISImCo3UEap95K ksZryt3KhEWDEHQue5Cx6wtFLwW1MHmpY2Riv2PB+DM/TFohWq8WIatucNvK3O3w d5vjmCRA1vSJzyD1mC6rpePtIi/ZkDKsu8oaLWf0qDucgLKr/TRFGyz1it/BX56R 4a/lEm9axDnIApQKSy8RDt+3VXiocNSY3ATlX/svo3+K6OimozuAUhXSBo72HdfW qEiXvk5HFKqohL026yCufKG+1wunbPFWioD+ow5vMWNtA1tmbfk4CPidSFOMbXMt 5HgSYRa6Y7NA98g= =P3tE -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libbio-procedural-perl_1.7.4-5.dsc: no acceptable signature found dpkg-source: info: extracting libbio-procedural-perl in /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4 dpkg-source: info: unpacking libbio-procedural-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-procedural-perl_1.7.4-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_remote_tests.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 30 Jun 2025 20:00:16 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-procedural-perl_1.7.4-5 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-procedural-perl_1.7.4-5 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-f19d0149-01d3-4970-884d-db6a72fd6fc9 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libbio-procedural-perl dpkg-buildpackage: info: source version 1.7.4-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-procedural-perl using existing ./libbio-procedural-perl_1.7.4.orig.tar.gz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building libbio-procedural-perl in libbio-procedural-perl_1.7.4-5.debian.tar.xz dpkg-source: info: building libbio-procedural-perl in libbio-procedural-perl_1.7.4-5.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Procedural Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' cp lib/Bio/Procedural.pm blib/lib/Bio/Procedural.pm cp lib/Bio/Perl.pm blib/lib/Bio/Perl.pm Manifying 2 pod documents make[1]: Leaving directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..2 ok 1 - Bio/Perl.pm loaded ok ok 2 - Bio/Procedural.pm loaded ok ok t/author-eol.t ........... skipped: these tests are for testing by the author t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-no-tabs.t ....... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/Perl.t ................. 1..31 ok 1 - use Bio::Perl; ok 2 ok 3 - An object of class 'Bio::Seq' isa 'Bio::SeqI' ok 4 ok 5 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::SeqI' ok 6 ok 7 - An object of class 'Bio::Seq' isa 'Bio::SeqI' ok 8 - An object of class 'Bio::Seq' isa 'Bio::SeqI' ok 9 ok 10 ok 11 - An object of class 'Bio::Seq' isa 'Bio::SeqI' ok 12 ok 13 - An object of class 'Bio::Seq' isa 'Bio::SeqI' ok 14 ok 15 - An object of class 'Bio::PrimarySeq' isa 'Bio::PrimarySeqI' ok 16 ok 17 ok 18 ok 19 ok 20 # skip disabled to avoid network access in every cases ok 21 # skip disabled to avoid network access in every cases ok 22 # skip disabled to avoid network access in every cases ok 23 # skip disabled to avoid network access in every cases ok 24 # skip disabled to avoid network access in every cases ok 25 # skip disabled to avoid network access in every cases ok 26 # skip disabled to avoid network access in every cases ok 27 # skip disabled to avoid network access in every cases ok 28 # skip disabled to avoid network access in every cases ok 29 # skip disabled to avoid network access in every cases ok 30 # skip disabled to avoid network access in every cases ok 31 # skip disabled to avoid network access in every cases ok All tests successful. Files=7, Tests=33, 1 wallclock secs ( 0.01 usr 0.02 sys + 0.30 cusr 0.07 csys = 0.40 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-procedural-perl/ make -j2 install DESTDIR=/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4/debian/libbio-procedural-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' Manifying 2 pod documents Installing /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4/debian/libbio-procedural-perl/usr/share/perl5/Bio/Perl.pm Installing /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4/debian/libbio-procedural-perl/usr/share/perl5/Bio/Procedural.pm Installing /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4/debian/libbio-procedural-perl/usr/share/man/man3/Bio::Procedural.3pm Installing /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4/debian/libbio-procedural-perl/usr/share/man/man3/Bio::Perl.3pm make[1]: Leaving directory '/build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-procedural-perl' in '../libbio-procedural-perl_1.7.4-5_all.deb'. dpkg-genbuildinfo -O../libbio-procedural-perl_1.7.4-5_amd64.buildinfo dpkg-genchanges -O../libbio-procedural-perl_1.7.4-5_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-06-30T20:00:19Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 30 Jun 2025 20:00:19 +0000 | +------------------------------------------------------------------------------+ libbio-procedural-perl_1.7.4-5_amd64.changes: --------------------------------------------- Format: 1.8 Date: Wed, 09 Apr 2025 12:10:15 +0200 Source: libbio-procedural-perl Binary: libbio-procedural-perl Architecture: source all Version: 1.7.4-5 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-procedural-perl - Simple low-dependency procedural interfaces to BioPerl Closes: 1098343 Changes: libbio-procedural-perl (1.7.4-5) unstable; urgency=medium . * Team upload. * no_remote_tests.patch: unconditional skip of network tests. (Closes: #1098343) * d/rules: remove unneeded proxy settings. * d/control: declare compliance to standards version 4.7.2. 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libbio-procedural-perl_1.7.4-5.dsc 346641314e1836daf780630b2a7a63bd2dd8caffa0f9c72b1ae32a8c290b724f 17444 libbio-procedural-perl_1.7.4-5_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 30 Jun 2025 20:00:19 +0000 Build-Path: /build/libbio-procedural-perl-2lypbI/libbio-procedural-perl-1.7.4 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.44-3), libbio-asn1-entrezgene-perl (= 1.730-3), libbio-cluster-perl (= 1.7.3-6), libbio-db-embl-perl (= 1.7.4-4), libbio-db-ncbihelper-perl (= 1.7.8-1), libbio-db-refseq-perl (= 1.7.4-2), libbio-db-swissprot-perl (= 1.7.4-2), libbio-perl-perl (= 1.7.8-1), libbio-tools-run-remoteblast-perl (= 1.7.3-3), libbio-variation-perl (= 1.7.5-3), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcache-cache-perl (= 1.08-3), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcapture-tiny-perl (= 0.50-1), libcc1-0 (= 14.2.0-19), libcgi-pm-perl (= 4.68-1), libclass-data-inheritable-perl (= 0.10-1), libclone-perl (= 0.47-1+b2), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libencode-locale-perl (= 1.05-3), liberror-perl (= 0.17030-1), libexception-class-perl (= 1.45-1), libexpat1 (= 2.7.1-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhtml-parser-perl (= 3.83-1+b3), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 7.00-2), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-19), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.089-1), libio-string-perl (= 1.08-4), libipc-sharelite-perl (= 0.17-5+b4), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-3+b1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libproc2-0 (= 2:4.0.4-8), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 257.7-1), libtest-deep-perl (= 1.205-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-requiresinternet-perl (= 0.05-4), libtest-warn-perl (= 0.37-2), libtext-charwidth-perl (= 0.04-11+b5), libtext-diff-perl (= 1.45-2), libtext-wrapi18n-perl (= 0.06-10), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtry-tiny-perl (= 0.32-1), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), liburi-perl (= 5.30-1), libuuid1 (= 2.41-5), libwww-perl (= 6.78-1), libwww-robotrules-perl (= 6.02-1), libxml-namespacesupport-perl (= 1.12-2), libxml-parser-perl (= 2.47-1+b4), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-4), libxml-twig-perl (= 1:3.52-3), libxml-writer-perl (= 0.900-2), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.0-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-8), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), ucf (= 3.0052), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1744193415" +------------------------------------------------------------------------------+ | Package contents Mon, 30 Jun 2025 20:00:19 +0000 | +------------------------------------------------------------------------------+ libbio-procedural-perl_1.7.4-5_all.deb -------------------------------------- new Debian package, version 2.0. size 17444 bytes: control archive=844 bytes. 522 bytes, 13 lines control 623 bytes, 8 lines md5sums Package: libbio-procedural-perl Version: 1.7.4-5 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 58 Depends: perl:any, libbio-perl-perl Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-Procedural Description: Simple low-dependency procedural interfaces to BioPerl The code in this distribution focuses on simple low-dependency procedural interfaces to BioPerl that don't require knowledge of BioPerl classes and methods. drwxr-xr-x root/root 0 2025-04-09 10:10 ./ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/doc/libbio-procedural-perl/ -rw-r--r-- root/root 590 2025-04-09 10:10 ./usr/share/doc/libbio-procedural-perl/changelog.Debian.gz -rw-r--r-- root/root 215 2019-11-29 20:46 ./usr/share/doc/libbio-procedural-perl/changelog.gz -rw-r--r-- root/root 1058 2025-04-09 10:10 ./usr/share/doc/libbio-procedural-perl/copyright drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/doc/libbio-procedural-perl/examples/ -rwxr-xr-x root/root 16719 2019-11-29 20:46 ./usr/share/doc/libbio-procedural-perl/examples/bioperl.pl drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/man/ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/man/man3/ -rw-r--r-- root/root 3852 2025-04-09 10:10 ./usr/share/man/man3/Bio::Perl.3pm.gz -rw-r--r-- root/root 1634 2025-04-09 10:10 ./usr/share/man/man3/Bio::Procedural.3pm.gz drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/perl5/ drwxr-xr-x root/root 0 2025-04-09 10:10 ./usr/share/perl5/Bio/ -rw-r--r-- root/root 18397 2019-11-29 20:46 ./usr/share/perl5/Bio/Perl.pm -rw-r--r-- root/root 1931 2019-11-29 20:46 ./usr/share/perl5/Bio/Procedural.pm +------------------------------------------------------------------------------+ | Post Build Mon, 30 Jun 2025 20:00:20 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 30 Jun 2025 20:00:20 +0000 | +------------------------------------------------------------------------------+ Purging /build/libbio-procedural-perl-2lypbI Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 30 Jun 2025 20:00:20 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 620 Build-Time: 3 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 10 Job: /srv/debomatic/incoming/libbio-procedural-perl_1.7.4-5.dsc Machine Architecture: amd64 Package: libbio-procedural-perl Package-Time: 15 Source-Version: 1.7.4-5 Space: 620 Status: successful Version: 1.7.4-5 -------------------------------------------------------------------------------- Finished at 2025-06-30T20:00:19Z Build needed 00:00:15, 620k disk space