sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | libbio-db-refseq-perl 1.7.4-2 (amd64) Mon, 30 Jun 2025 19:58:24 +0000 | +==============================================================================+ Package: libbio-db-refseq-perl Version: 1.7.4-2 Source Version: 1.7.4-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 30 Jun 2025 19:58:25 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-refseq-perl_1.7.4-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libbio-db-refseq-perl_1.7.4-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 30 Jun 2025 19:58:25 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:3 http://localhost:3142/debian sid InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 30 Jun 2025 19:58:31 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libbio-db-refseq-perl_1.7.4-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 30 Jun 2025 19:58:31 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), build-essential, libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl Filtered Build-Depends: debhelper-compat (= 12), build-essential, libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ InRelease Get:2 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ Release [609 B] Ign:3 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ Release.gpg Get:4 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ Sources [749 B] Get:5 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ Packages [768 B] Fetched 2126 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-needs-perl libtest-requiresinternet-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libsub-name-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl libarchive-cpio-perl libhtml-format-perl libio-compress-brotli-perl libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libalgorithm-diff-perl libarchive-zip-perl libbio-perl-perl libcapture-tiny-perl libclass-data-inheritable-perl libclone-perl libdata-stag-perl libdebhelper-perl libdevel-stacktrace-perl libelf1t64 libencode-locale-perl libexception-class-perl libfile-listing-perl libfile-stripnondeterminism-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1t64 libnet-http-perl libnet-ssleay-perl libpipeline1 libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-needs-perl libtest-requiresinternet-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libtry-tiny-perl libuchardet0 liburi-perl libwww-perl libwww-robotrules-perl libxml2 m4 man-db netbase openssl perl-openssl-defaults po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 71 newly installed, 0 to remove and 0 not upgraded. Need to get 16.8 MB/17.3 MB of archives. After this operation, 58.4 MB of additional disk space will be used. Get:1 file:/srv/reprepro perl-5.40/main amd64 libclone-perl amd64 0.47-1+b2 [13.8 kB] Get:2 copy:/build/libbio-db-refseq-perl-B5aJBY/resolver-4zldK7/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [908 B] Get:3 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-2 [1490 kB] Get:6 file:/srv/reprepro perl-5.40/main amd64 libhtml-parser-perl amd64 3.83-1+b3 [99.7 kB] Get:7 file:/srv/reprepro perl-5.40/main amd64 libnet-ssleay-perl amd64 1.94-3+b1 [339 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:29 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:42 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:51 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:52 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:53 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:54 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:55 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:56 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:57 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:58 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:59 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get:60 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:61 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB] Get:62 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:63 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get:64 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get:65 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get:66 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get:67 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get:68 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get:69 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get:70 http://deb.debian.org/debian unstable/main amd64 libtest-needs-perl all 0.002010-1 [9352 B] Get:71 http://deb.debian.org/debian unstable/main amd64 libtest-requiresinternet-perl all 0.05-4 [6864 B] Preconfiguring packages ... Fetched 16.8 MB in 0s (87.0 MB/s) Selecting previously unselected package netbase. (Reading database ... 23091 files and directories currently installed.) Preparing to unpack .../00-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.0-2_amd64.deb ... Unpacking openssl (3.5.0-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... 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Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../42-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../43-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../44-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../45-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../46-libhtml-parser-perl_3.83-1+b3_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.83-1+b3) ... Selecting previously unselected package libhtml-tree-perl. 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Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../53-perl-openssl-defaults_7+b2_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b2) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../54-libnet-ssleay-perl_1.94-3+b1_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.94-3+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../55-libio-socket-ssl-perl_2.089-1_all.deb ... Unpacking libio-socket-ssl-perl (2.089-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../56-libnet-http-perl_6.23-1_all.deb ... Unpacking libnet-http-perl (6.23-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../57-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../58-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../59-libwww-perl_6.78-1_all.deb ... Unpacking libwww-perl (6.78-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../60-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../61-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../62-libtest-deep-perl_1.205-1_all.deb ... Unpacking libtest-deep-perl (1.205-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../63-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../64-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../65-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../66-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../67-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package libtest-needs-perl. Preparing to unpack .../68-libtest-needs-perl_0.002010-1_all.deb ... Unpacking libtest-needs-perl (0.002010-1) ... Selecting previously unselected package libtest-requiresinternet-perl. Preparing to unpack .../69-libtest-requiresinternet-perl_0.05-4_all.deb ... Unpacking libtest-requiresinternet-perl (0.05-4) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../70-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libclone-perl:amd64 (0.47-1+b2) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:amd64 (7+b2) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libtest-needs-perl (0.002010-1) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.5) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.5.0-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-3+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.23.1-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtest-requiresinternet-perl (0.05-4) ... Setting up libtool (2.5.4-4) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-9) ... Setting up libhtml-parser-perl:amd64 (3.83-1+b3) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures Mon, 30 Jun 2025 19:58:40 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 30 Jun 2025 19:58:40 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libalgorithm-diff-perl_1.201-1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbinutils_2.44-3 libbio-perl-perl_1.7.8-1 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcapture-tiny-perl_0.50-1 libcc1-0_14.2.0-19 libclass-data-inheritable-perl_0.10-1 libclone-perl_0.47-1+b2 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdata-stag-perl_0.14-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdevel-stacktrace-perl_2.0500-1 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libencode-locale-perl_1.05-3 libexception-class-perl_1.45-1 libffi8_3.4.8-2 libfile-listing-perl_6.16-1 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libhogweed6t64_3.10.1-1 libhtml-parser-perl_3.83-1+b3 libhtml-tagset-perl_3.24-1 libhtml-tree-perl_5.07-3 libhttp-cookies-perl_6.11-1 libhttp-date-perl_6.06-1 libhttp-message-perl_7.00-2 libhttp-negotiate-perl_6.01-2 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libio-html-perl_1.004-3 libio-socket-ssl-perl_2.089-1 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblwp-mediatypes-perl_6.04-2 liblwp-protocol-https-perl_6.14-1 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnet-http-perl_6.23-1 libnet-ssleay-perl_1.94-3+b1 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsub-uplevel-perl_0.2800-3 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtest-deep-perl_1.205-1 libtest-differences-perl_0.71-1 libtest-exception-perl_0.43-3 libtest-most-perl_0.38-1 libtest-needs-perl_0.002010-1 libtest-requiresinternet-perl_0.05-4 libtest-warn-perl_0.37-2 libtext-diff-perl_1.45-2 libtimedate-perl_2.3300-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 liburi-perl_5.30-1 libuuid1_2.41-5 libwww-perl_6.78-1 libwww-robotrules-perl_6.02-1 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl_3.5.0-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 perl-openssl-defaults_7+b2 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 30 Jun 2025 19:58:40 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-db-refseq-perl Binary: libbio-db-refseq-perl Architecture: all Version: 1.7.4-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-DB-RefSeq Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbio-db-refseq-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-db-refseq-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 12) Build-Depends-Indep: libbio-perl-perl, libtest-most-perl, libhttp-message-perl, libwww-perl, libtest-requiresinternet-perl, libtest-needs-perl, perl Package-List: libbio-db-refseq-perl deb perl optional arch=all Checksums-Sha1: 3f19baaa6b61630152b8d4973ed32adb720cc786 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz a477148f9407a7a36bc32cf2e0042dbe2744ff82 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz Checksums-Sha256: f3f4e44827cc86af9c2486c63935474951fde7f8647d2edc0c3a18c23640feab 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz bd5fe927dd3009ff6f85f8a084b514c1c67c3dbb2b416e066013d141707a85cf 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz Files: 0cfdbfd77e868e39387a7014094b9d58 13741 libbio-db-refseq-perl_1.7.4.orig.tar.gz 5991c511ea92a6400d782901dea9ffa3 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmgE014RHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBqH6BAAh2J2ZHCCKaTcwPBZE/bo3ueqseXeTzj/ xRQh3xOjyTZfhs3r7H+cynqwTzDNRxs4Ctkqw7ahH78cfKd/+rP16UIlUIfxBJDp NCTJg0xI2bJrGBzKaZWem+Jf6nbHuh8wsUEVap7LxtHMnsVc3cKOIFvovhGiMtaV VtHPp9IeoBE1YYp2MRzlD5502Ceua3JQJyGdp25KtrOLOS7tP4B3ircoEotWW64c Cupa0nEc9Oc4QALFztdGmTAoXivusj9Ss6c1AgV4kDZjbyWCxZM82nPYBJ6pWwRK rEowuDvdsw656qSXUlWu71zu71kJOHqbcqEfFnmYnLuXyHLrGbogLtE8QGBzzyjP QKDBXfgVKhrRGvIN66xFYPbVTxD8ufD/b1Wfrjd98eAhPI0l/kPFFgHVA5msw3ZV 5N/xHwYrf8t75yaJHWBhfcwOTSO0KdFWBHzpdSSYD7VRDrQFoog5amv+viBgh9/l WM8wmm2j0HAt3vphz5X1cEh5Tj4bpwnMKC1eHO47OeEXKXW4x+TSovJfDwEslwRp ugXLnF2hcA1lBcnCx+cHV9T1nOpL8z9j9zeZZcmmf2fO+nJIIEZFtGXfydwmO/f2 L4S3a03jn7TWBeoSkml7YOx45jZGQezhCa955/QDyYZ042VPKYABpCO9y/lA8tQk wsfWza+0tto= =zGBu -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./libbio-db-refseq-perl_1.7.4-2.dsc: no acceptable signature found dpkg-source: info: extracting libbio-db-refseq-perl in /build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4 dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4.orig.tar.gz dpkg-source: info: unpacking libbio-db-refseq-perl_1.7.4-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 30 Jun 2025 19:58:40 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-refseq-perl_1.7.4-2 perl-5.40-throwaway amd64 ------------------------------------------------------------------------------------------------------------------------------ I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libbio-db-refseq-perl_1.7.4-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-ce3eed52-68c8-4534-9afd-c20edc1abf08 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package libbio-db-refseq-perl dpkg-buildpackage: info: source version 1.7.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libbio-db-refseq-perl using existing ./libbio-db-refseq-perl_1.7.4.orig.tar.gz dpkg-source: info: building libbio-db-refseq-perl in libbio-db-refseq-perl_1.7.4-2.debian.tar.xz dpkg-source: info: building libbio-db-refseq-perl in libbio-db-refseq-perl_1.7.4-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::RefSeq Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm Manifying 1 pod document make[1]: Leaving directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/DB/RefSeq.pm loaded ok ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author t/RefSeq.t ............... ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 1..6 ok All tests successful. Files=5, Tests=7, 2 wallclock secs ( 0.02 usr 0.01 sys + 0.28 cusr 0.05 csys = 0.36 CPU) Result: PASS make[1]: Leaving directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-db-refseq-perl/ make -j2 install DESTDIR=/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' Manifying 1 pod document Installing /build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/perl5/Bio/DB/RefSeq.pm Installing /build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4/debian/libbio-db-refseq-perl/usr/share/man/man3/Bio::DB::RefSeq.3pm make[1]: Leaving directory '/build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-db-refseq-perl' in '../libbio-db-refseq-perl_1.7.4-2_all.deb'. dpkg-genbuildinfo -O../libbio-db-refseq-perl_1.7.4-2_amd64.buildinfo dpkg-genchanges -O../libbio-db-refseq-perl_1.7.4-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-06-30T19:58:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 30 Jun 2025 19:58:45 +0000 | +------------------------------------------------------------------------------+ libbio-db-refseq-perl_1.7.4-2_amd64.changes: -------------------------------------------- Format: 1.8 Date: Sun, 20 Apr 2025 12:45:44 +0200 Source: libbio-db-refseq-perl Binary: libbio-db-refseq-perl Architecture: source all Version: 1.7.4-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: libbio-db-refseq-perl - Database object interface for RefSeq retrieval Changes: libbio-db-refseq-perl (1.7.4-2) unstable; urgency=medium . * Team Upload * Bump Standards-version to 4.7.2 . [ Andreas Tille ] * Fix maintainer address Checksums-Sha1: 87fd6153b46cb3e5005f67a2bd678d01eaac9b8f 1359 libbio-db-refseq-perl_1.7.4-2.dsc d855539e662c0eae06348fa05eb61792513acf0b 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz 9080b7dc48d70d829dc1e9e9d8765115b72daab8 7400 libbio-db-refseq-perl_1.7.4-2_all.deb b674bb5bdcc6556124d2baac7fcb0ad2e518a23a 6489 libbio-db-refseq-perl_1.7.4-2_amd64.buildinfo Checksums-Sha256: cec29783c1bd5b2e0b6ab60b09de48342844a5d84ebe1ab72db3aa44f0936cbc 1359 libbio-db-refseq-perl_1.7.4-2.dsc 1475c79869c94c2b8be504520d2dbfe5fdb20025a0205475aa4b1f7f6e694f7a 2008 libbio-db-refseq-perl_1.7.4-2.debian.tar.xz 7bbc3d8da0c6c06f266ceeddbfed9485363b5f7b0d847d2936be929d2a3ed6bd 7400 libbio-db-refseq-perl_1.7.4-2_all.deb e9798f22163447e1c3f4bdfadc00f0bf588b1590282d0bc0a59106c388e5f070 6489 libbio-db-refseq-perl_1.7.4-2_amd64.buildinfo Files: 3051ece1815ad70adcd454a08626298e 1359 perl optional libbio-db-refseq-perl_1.7.4-2.dsc f7546bb18fbc98182c9cd9c628b3cf47 2008 perl optional libbio-db-refseq-perl_1.7.4-2.debian.tar.xz acbd27e05bc8af46a2b993ee5c7d6c18 7400 perl optional libbio-db-refseq-perl_1.7.4-2_all.deb 4b8ff7d78ebee6cbec1965cb5df7d0f8 6489 perl optional libbio-db-refseq-perl_1.7.4-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Mon, 30 Jun 2025 19:58:45 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: libbio-db-refseq-perl Binary: libbio-db-refseq-perl Architecture: all source Version: 1.7.4-2 Checksums-Md5: 3051ece1815ad70adcd454a08626298e 1359 libbio-db-refseq-perl_1.7.4-2.dsc acbd27e05bc8af46a2b993ee5c7d6c18 7400 libbio-db-refseq-perl_1.7.4-2_all.deb Checksums-Sha1: 87fd6153b46cb3e5005f67a2bd678d01eaac9b8f 1359 libbio-db-refseq-perl_1.7.4-2.dsc 9080b7dc48d70d829dc1e9e9d8765115b72daab8 7400 libbio-db-refseq-perl_1.7.4-2_all.deb Checksums-Sha256: cec29783c1bd5b2e0b6ab60b09de48342844a5d84ebe1ab72db3aa44f0936cbc 1359 libbio-db-refseq-perl_1.7.4-2.dsc 7bbc3d8da0c6c06f266ceeddbfed9485363b5f7b0d847d2936be929d2a3ed6bd 7400 libbio-db-refseq-perl_1.7.4-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 30 Jun 2025 19:58:45 +0000 Build-Path: /build/libbio-db-refseq-perl-B5aJBY/libbio-db-refseq-perl-1.7.4 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libalgorithm-diff-perl (= 1.201-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.5-1), libaudit1 (= 1:4.0.5-1), libbinutils (= 2.44-3), libbio-perl-perl (= 1.7.8-1), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcapture-tiny-perl (= 0.50-1), libcc1-0 (= 14.2.0-19), libclass-data-inheritable-perl (= 0.10-1), libclone-perl (= 0.47-1+b2), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdata-stag-perl (= 0.14-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdevel-stacktrace-perl (= 2.0500-1), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libencode-locale-perl (= 1.05-3), libexception-class-perl (= 1.45-1), libfile-listing-perl (= 6.16-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhtml-parser-perl (= 3.83-1+b3), libhtml-tagset-perl (= 3.24-1), libhtml-tree-perl (= 5.07-3), libhttp-cookies-perl (= 6.11-1), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 7.00-2), libhttp-negotiate-perl (= 6.01-2), libhwasan0 (= 14.2.0-19), libio-html-perl (= 1.004-3), libio-socket-ssl-perl (= 2.089-1), libio-string-perl (= 1.08-4), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblwp-mediatypes-perl (= 6.04-2), liblwp-protocol-https-perl (= 6.14-1), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libnet-http-perl (= 6.23-1), libnet-ssleay-perl (= 1.94-3+b1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsub-uplevel-perl (= 0.2800-3), libsystemd0 (= 257.7-1), libtest-deep-perl (= 1.205-1), libtest-differences-perl (= 0.71-1), libtest-exception-perl (= 0.43-3), libtest-most-perl (= 0.38-1), libtest-needs-perl (= 0.002010-1), libtest-requiresinternet-perl (= 0.05-4), libtest-warn-perl (= 0.37-2), libtext-diff-perl (= 1.45-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtry-tiny-perl (= 0.32-1), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), liburi-perl (= 5.30-1), libuuid1 (= 2.41-5), libwww-perl (= 6.78-1), libwww-robotrules-perl (= 6.02-1), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl (= 3.5.0-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), perl-openssl-defaults (= 7+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1745145944" +------------------------------------------------------------------------------+ | Package contents Mon, 30 Jun 2025 19:58:45 +0000 | +------------------------------------------------------------------------------+ libbio-db-refseq-perl_1.7.4-2_all.deb ------------------------------------- new Debian package, version 2.0. size 7400 bytes: control archive=1040 bytes. 1031 bytes, 25 lines control 396 bytes, 5 lines md5sums Package: libbio-db-refseq-perl Version: 1.7.4-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 23 Depends: perl:any, libhttp-message-perl, libwww-perl, libbio-perl-perl Breaks: libbio-perl-perl (<< 1.7.3) Replaces: libbio-perl-perl (<< 1.7.3) Section: perl Priority: optional Homepage: https://metacpan.org/release/Bio-DB-RefSeq Description: Database object interface for RefSeq retrieval Allows the dynamic retrieval of sequence objects Bio::Seq from the RefSeq nucleotide database using the dbfetch script at EBI: . http://www.ebi.ac.uk/Tools/dbfetch/dbfetch . At this time the module specifically retrieves nucleotide sequences only. . In order to make changes transparent host type (currently only ebi) and location (defaults to ebi) were separated out. This allows later additions of more servers in different geographical locations. . The functionality of this module is inherited from Bio::DB::DBFetch which implements Bio::DB::WebDBSeqI. drwxr-xr-x root/root 0 2025-04-20 10:45 ./ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/doc/libbio-db-refseq-perl/ -rw-r--r-- root/root 384 2025-04-20 10:45 ./usr/share/doc/libbio-db-refseq-perl/changelog.Debian.gz -rw-r--r-- root/root 282 2019-12-07 22:09 ./usr/share/doc/libbio-db-refseq-perl/changelog.gz -rw-r--r-- root/root 1156 2024-11-17 18:05 ./usr/share/doc/libbio-db-refseq-perl/copyright drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/man/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/man/man3/ -rw-r--r-- root/root 2401 2025-04-20 10:45 ./usr/share/man/man3/Bio::DB::RefSeq.3pm.gz drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/perl5/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/perl5/Bio/ drwxr-xr-x root/root 0 2025-04-20 10:45 ./usr/share/perl5/Bio/DB/ -rw-r--r-- root/root 4747 2019-12-07 22:09 ./usr/share/perl5/Bio/DB/RefSeq.pm +------------------------------------------------------------------------------+ | Post Build Mon, 30 Jun 2025 19:58:45 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 30 Jun 2025 19:58:45 +0000 | +------------------------------------------------------------------------------+ Purging /build/libbio-db-refseq-perl-B5aJBY Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 30 Jun 2025 19:58:46 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 424 Build-Time: 5 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 9 Job: /srv/debomatic/incoming/libbio-db-refseq-perl_1.7.4-2.dsc Machine Architecture: amd64 Package: libbio-db-refseq-perl Package-Time: 21 Source-Version: 1.7.4-2 Space: 424 Status: successful Version: 1.7.4-2 -------------------------------------------------------------------------------- Finished at 2025-06-30T19:58:45Z Build needed 00:00:21, 424k disk space