sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | eigensoft 8.0.0+dfsg-2 (amd64) Mon, 30 Jun 2025 10:40:04 +0000 | +==============================================================================+ Package: eigensoft Version: 8.0.0+dfsg-2 Source Version: 8.0.0+dfsg-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 30 Jun 2025 10:40:05 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup eigensoft_8.0.0+dfsg-2 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup eigensoft_8.0.0+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 30 Jun 2025 10:40:05 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [208 kB] Get:3 http://deb.debian.org/debian unstable InRelease [208 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-06-30-0804.30-F-2025-06-30-0804.30.pdiff [354 B] Get:5 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-06-30-0804.30-F-2025-06-30-0804.30.pdiff [354 B] Get:6 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:7 http://localhost:3142/debian sid/main Sources T-2025-06-30-0804.30-F-2025-06-30-0804.30.pdiff [737 B] Get:7 http://localhost:3142/debian sid/main Sources T-2025-06-30-0804.30-F-2025-06-30-0804.30.pdiff [737 B] Fetched 545 kB in 2s (354 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 30 Jun 2025 10:40:08 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/eigensoft_8.0.0+dfsg-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 30 Jun 2025 10:40:09 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev, build-essential Filtered Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ InRelease Get:2 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ Release [609 B] Ign:3 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ Release.gpg Get:4 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ Sources [666 B] Get:5 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ Packages [705 B] Fetched 1980 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-14-dev libgfortran5 libgsl-dev libgsl28 libgslcblas0 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1t64 libpipeline1 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n gfortran-multilib gfortran-doc gfortran-14-multilib gfortran-14-doc libcoarrays-dev groff liblapack-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libgfortran-14-dev libgfortran5 libgsl-dev libgsl28 libgslcblas0 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1t64 libpipeline1 libtmglib-dev libtmglib3 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 35.3 MB of archives. After this operation, 147 MB of additional disk space will be used. Get:1 copy:/build/eigensoft-ZOGBFE/resolver-SI2P57/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-19 [880 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19 [11.7 MB] Get:33 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-19 [14.5 kB] Get:34 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B] Get:35 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B] Get:36 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-2 [170 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.8+dfsg-5 [116 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 libgsl28 amd64 2.8+dfsg-5 [994 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 libgsl-dev amd64 2.8+dfsg-5 [1222 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-2 [4998 kB] Get:43 http://deb.debian.org/debian unstable/main amd64 libtmglib3 amd64 3.12.1-2 [125 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 liblapacke amd64 3.12.1-2 [381 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 libtmglib-dev amd64 3.12.1-2 [129 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 liblapacke-dev amd64 3.12.1-2 [381 kB] Preconfiguring packages ... Fetched 35.3 MB in 0s (119 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23092 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up autopoint (0.23.1-2) ... Setting up libgfortran5:amd64 (14.2.0-19) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libgsl28:amd64 (2.8+dfsg-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libblas-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:amd64 (14.2.0-19) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libtool (2.5.4-4) ... Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libtmglib3:amd64 (3.12.1-2) ... Setting up liblapack-dev:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up liblapacke:amd64 (3.12.1-2) ... Setting up libtmglib-dev:amd64 (3.12.1-2) ... Setting up gfortran-14 (14.2.0-19) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up liblapacke-dev:amd64 (3.12.1-2) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ... Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up debhelper (13.24.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures Mon, 30 Jun 2025 10:40:15 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment Mon, 30 Jun 2025 10:40:15 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gfortran_4:14.2.0-1 gfortran-14_14.2.0-19 gfortran-14-x86-64-linux-gnu_14.2.0-19 gfortran-x86-64-linux-gnu_4:14.2.0-1 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblas-dev_3.12.1-2 libblas3_3.12.1-2 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran-14-dev_14.2.0-19 libgfortran5_14.2.0-19 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libgsl-dev_2.8+dfsg-5 libgsl28_2.8+dfsg-5 libgslcblas0_2.8+dfsg-5 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblapack-dev_3.12.1-2 liblapack3_3.12.1-2 liblapacke_3.12.1-2 liblapacke-dev_3.12.1-2 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtmglib-dev_3.12.1-2 libtmglib3_3.12.1-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 30 Jun 2025 10:40:15 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: eigensoft Binary: eigensoft Architecture: any Version: 8.0.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/eigensoft Vcs-Git: https://salsa.debian.org/med-team/eigensoft.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev Package-List: eigensoft deb science optional arch=any Checksums-Sha1: 4dbd0c7d2ec075bc5629202db818578c1a96315b 231064 eigensoft_8.0.0+dfsg.orig.tar.xz 1956f229583dfd3cab5744b06ebfd3fe511350eb 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz Checksums-Sha256: 5a9576af6d30564391f5892713e9d434c4d0b5baeb75aa720ff1dad7cf556baf 231064 eigensoft_8.0.0+dfsg.orig.tar.xz a7cb4d5a066dbee75101e94b072c46fa40c187d4265a242f678e27215942edd7 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz Files: 6cc8676fe6f4fe95517ef7d2d2df6606 231064 eigensoft_8.0.0+dfsg.orig.tar.xz b66fd65eb720935b1b676360f8bcd74b 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmW6jykRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0bw//Ueg3uVzVJCCFsvsgUVjzWvuEnuBEjDO4 PkKwk6irxdPInqfuxYoeguzyP3X8suN5ZTzZvbpDazzG26Bo1EXrtxCVRliP19o+ yaB1sPbMe00xIu6ouTkRcDDfrx05ixkK6BmU0WPbQXo22m8FkEHTkP21usBPAsmQ nttlSUvShpNPPjsiSrWGG90dJ0HAK1pOafbUUVU+XAv4Ocl37DMUwUiw3hTmkHnU KkHB7UT6uOWY7ICVBT+p1bveyczJmi+vVLsvfbONQg6zZN7eHonsYo256oM8rte2 HCnc2uBcC7y/UtY4nKwrDvXKltid3QkzuBQhMCFMcojrY6CsGLKjsPbOk837g1s4 Rm8uNL9dchaCGuHQNtJ3RjrFgb3sIXMqKvNzxtALEKlc9WnyZKPU0gNsWOpuyU2+ wcY9nfNUQLXnbeqmSFftMxTHLy5ged7d/g4KSH4i6gliBZItZxJ7+2rk6096m1Cu PABDNTn8s1m0ilOBNEM6x4xpjfXBPre7rSNtYYergd8QVGUNPpfQEsy8QPY/1TvN g7V47kfO6YvcwjTlXZYvj/y7EqVbykO886m5BIvJiqOmNunnMhBVzRU8hmznG/31 sS5e179GaUSIcgFTp/RfUqYC+2rqWGINV4QHyLd74baFMWJaBqV3vQTIYCr+1c7c nGXl+q05XPc= =FR3v -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./eigensoft_8.0.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting eigensoft in /build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg dpkg-source: info: unpacking eigensoft_8.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking eigensoft_8.0.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blas.patch dpkg-source: info: applying lapacke.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 30 Jun 2025 10:40:16 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network eigensoft_8.0.0+dfsg-2 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network eigensoft_8.0.0+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-4cf2697e-052c-4f4f-b071-adc9db70dea1 SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package eigensoft dpkg-buildpackage: info: source version 8.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/eigensoft.substvars debian/files rm -fr -- debian/eigensoft/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) /usr/bin/make -C src clobber make[2]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o rm -f baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca cd ../bin/ ; rm -f baseprog convertf mergeit pca pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src make[2]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' make[1]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building eigensoft using existing ./eigensoft_8.0.0+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building eigensoft in eigensoft_8.0.0+dfsg-2.debian.tar.xz dpkg-source: info: building eigensoft in eigensoft_8.0.0+dfsg-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' /usr/bin/make DEBUG_OPTIONS=-g -C src all make[2]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c mcio.c: In function ‘snpsortit’: mcio.c:119:16: warning: result of ‘10^8’ is 2; did you mean ‘1e8’? [-Wxor-used-as-pow] 119 | base[1] = 10 ^ 8; | ^ | -- | 1 e mcio.c:119:13: note: you can silence this warning by using a hexadecimal constant (0xa rather than 10) 119 | base[1] = 10 ^ 8; | ^~ | 0xa mcio.c:120:16: warning: result of ‘10^9’ is 3; did you mean ‘1e9’? [-Wxor-used-as-pow] 120 | base[2] = 10 ^ 9; | ^ | -- | 1 e mcio.c:120:13: note: you can silence this warning by using a hexadecimal constant (0xa rather than 10) 120 | base[2] = 10 ^ 9; | ^~ | 0xa mcio.c: In function ‘getgenos’: mcio.c:1383:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1383 | system (cmd); | ^~~~~~~~~~~~ mcio.c: In function ‘outfiles’: mcio.c:3218:23: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3218 | printf ("snpname: %s %d\n", snpname, numsnps); | ^~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c admutils.c: In function ‘setid2pops’: admutils.c:1256:31: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 1256 | printf ("(setid2pops): %s not found\n"); | ~^ | | | char * cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c /usr/bin/make -C nicksrc make[3]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src/nicksrc' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c strsubs.c: In function ‘printslurmenv’: strsubs.c:2007:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2007 | system(sss) ; | ^~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c xsearch.c: In function ‘xloadsearchx’: xsearch.c:256:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 256 | sprintf (xx, "%d", i); | ^~ xsearch.c:256:18: note: directive argument in the range [0, 2147483646] 256 | sprintf (xx, "%d", i); | ^~~~ In file included from /usr/include/stdio.h:970, from xsearch.c:1: In function ‘sprintf’, inlined from ‘xloadsearchx’ at xsearch.c:256:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearchx’: xsearch.c:256:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 256 | sprintf (xx, "%d", i); | ^~ xsearch.c:256:18: note: directive argument in the range [0, 2147483646] 256 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearchx’ at xsearch.c:256:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearch’: xsearch.c:278:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 278 | sprintf (xx, "%d", i); | ^~ xsearch.c:278:18: note: directive argument in the range [0, 2147483646] 278 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearch’ at xsearch.c:278:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ xsearch.c: In function ‘xloadsearch’: xsearch.c:278:19: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 278 | sprintf (xx, "%d", i); | ^~ xsearch.c:278:18: note: directive argument in the range [0, 2147483646] 278 | sprintf (xx, "%d", i); | ^~~~ In function ‘sprintf’, inlined from ‘xloadsearch’ at xsearch.c:278:5: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 8 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -c -O3 -g -p -Wimplicit -I../../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c ar -r libnick.a strsubs.o sortit.o vsubs.o statsubs.o linsubs.o getpars.o xsearch.o gauss.o gds.o ar: creating libnick.a ranlib libnick.a make[3]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src/nicksrc' cc -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c cc -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c cc -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c pca.c: In function ‘main’: pca.c:102:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:167:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:190:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c cc -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c cc -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c cc -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c eigensrc/smarteigenstrat.c: In function ‘readpcafile’: eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 342 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 360 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c cc -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat eigensrc/eigenstrat.c: In function ‘main’: eigensrc/eigenstrat.c:86:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:123:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:130:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:133:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:165:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 165 | fscanf (fppheno, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:188:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 188 | fscanf (fppheno, "%c", &Xchar); /* should be end of file */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:244:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:267:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 267 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL eigensrc/eigenstratQTL.c: In function ‘main’: eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 123 | fscanf (fppca, "%d", &K); | ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 133 | fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 151 | fscanf (fppca, "%lf", &tempdouble); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 172 | fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 227 | fscanf (fp, "%c", &Xchar); | ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fscanf (fp, "%c", &Xchar); /* should be \n character */ | ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c eigensrc/smartpca.c: In function ‘main’: eigensrc/smartpca.c:1292:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘char *’ [-Wformat=] 1292 | printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ; | ~~^ ~~~~~~~~~~ | | | | int char * | %3s eigensrc/smartpca.c:1292:28: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] 1292 | printf("elllist: %3d %20s\n", indx -> ID) ; fflush(stdout) ; | ~~~^ | | | char * eigensrc/smartpca.c:1675:43: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘double’ [-Wformat=] 1675 | printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ; | ~^ ~ | | | | int double | %f eigensrc/smartpca.c:1675:51: warning: format ‘%f’ expects argument of type ‘double’, but argument 3 has type ‘int’ [-Wformat=] 1675 | printf("coeff multiplier (eigenvector %d): %9.3f\n", y, j) ; | ~~~~^ ~ | | | | double int | %9.3d eigensrc/smartpca.c:700:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 700 | system (buff); | ^~~~~~~~~~~~~ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c ksrc/kjg_gsl.c: In function ‘kjg_gsl_matrix_fscanf’: ksrc/kjg_gsl.c:38:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 38 | fscanf (stream, "%lg", &x); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca make[2]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' cd src && make install make[2]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' mv baseprog convertf mergeit pca eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin make[2]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg/src' make[1]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/eigensoft.substvars rm -fr -- debian/.debhelper/generated/eigensoft/ debian/eigensoft/ debian/tmp/ dh_auto_install --destdir=debian/eigensoft/ install -m0755 -d /build/eigensoft-ZOGBFE/eigensoft-8.0.0\+dfsg/debian/eigensoft debian/rules override_dh_install make[1]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dh_install install -m0755 -d debian/eigensoft/usr/bin cp --reflink=auto -a ./bin/baseprog ./bin/convertf ./bin/eigenstrat ./bin/eigenstratQTL ./bin/evec2pca-ped.perl ./bin/evec2pca.perl ./bin/gc.perl ./bin/mergeit ./bin/pca ./bin/pcatoy ./bin/ploteig ./bin/rescale_ell ./bin/smarteigenstrat ./bin/smarteigenstrat.perl ./bin/smartpca ./bin/smartpca.perl ./bin/smartrel ./bin/twstats debian/eigensoft/usr/bin/ install -m0755 -d debian/eigensoft/usr/lib/debian-med/bin cp --reflink=auto -a ./bin/gc.perl debian/eigensoft/usr/lib/debian-med/bin/ install -m0755 -d debian/eigensoft/usr/lib/eigensoft cp --reflink=auto -a ./bin/smarteigenstrat ./bin/smartpca debian/eigensoft/usr/lib/eigensoft/ install -m0755 -d debian/eigensoft/usr/share/eigensoft cp --reflink=auto -a ./CONVERTF ./EIGENSTRAT ./POPGEN debian/eigensoft/usr/share/eigensoft/ find debian/eigensoft/usr/share/ -type f -empty -delete # file consists only from single line with wrong interpreter find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete # Fix wrappers and drop *.perl extension in /usr/bin while keeping # the original name in /usr/lib/debian-med/bin mkdir -p debian/eigensoft/usr/lib/debian-med/bin for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \ rm -f debian/eigensoft/usr/bin/${pl} ; \ sed -i \ -e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \ -e "s?\(${pl}\)\.perl?\1?" \ debian/eigensoft/usr/bin/${pl}.perl ; \ cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \ mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \ done cd debian && for pl in `grep -lR '/usr/.*/bin/perl' | grep -v debian/rules` ; do \ sed -i -e "s?/usr/.*/bin/perl?/usr/bin/perl?" ${pl} ; \ done rm debian/eigensoft/usr/bin/gc.perl make[1]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dh_installdocs install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft cp --reflink=auto -a ./README debian/eigensoft/usr/share/doc/eigensoft chmod -R u\+rw,go=rX debian/eigensoft/usr/share/doc install -p -m0644 debian/README.Debian debian/eigensoft/usr/share/doc/eigensoft/README.Debian install -p -m0644 debian/copyright debian/eigensoft/usr/share/doc/eigensoft/copyright dh_installchangelogs install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft install -p -m0644 debian/.debhelper/generated/eigensoft/dh_installchangelogs.dch.trimmed debian/eigensoft/usr/share/doc/eigensoft/changelog.Debian dh_installexamples install -m0755 -d debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./CONVERTF debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./EIGENSTRAT debian/eigensoft/usr/share/doc/eigensoft/examples cp --reflink=auto -a ./POPGEN debian/eigensoft/usr/share/doc/eigensoft/examples dh_installman install -m0755 -d debian/eigensoft/usr/share/man/man1/ install -p -m0644 ./debian/mans/smarteigenstrat.1 debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 man-recode --to-code UTF-8 --suffix .dh-new debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 mv debian/eigensoft/usr/share/man/man1/smarteigenstrat.1.dh-new debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 chmod 0644 -- debian/eigensoft/usr/share/man/man1/smarteigenstrat.1 dh_perl mv debian/eigensoft.substvars.new debian/eigensoft.substvars dh_link install -m0755 -d debian/eigensoft/usr/bin rm -f debian/eigensoft/usr/bin/gc-eigensoft ln -s ../lib/debian-med/bin/gc.perl debian/eigensoft/usr/bin/gc-eigensoft dh_strip_nondeterminism dh_compress cd debian/eigensoft chmod a-x usr/share/doc/eigensoft/README usr/share/doc/eigensoft/changelog.Debian usr/share/man/man1/smarteigenstrat.1 gzip -9nf usr/share/doc/eigensoft/README usr/share/doc/eigensoft/changelog.Debian usr/share/man/man1/smarteigenstrat.1 cd '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' rm -f debian/eigensoft.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dh_fixperms find debian/eigensoft ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/eigensoft/usr/share/doc -type f -a -true -a ! -regex 'debian/eigensoft/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/eigensoft/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/eigensoft/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/eigensoft/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \; make[1]: Leaving directory '/build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg' dh_missing dh_dwz -a install -m0755 -d debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug -- debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/pcatoy debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/lib/eigensoft/smartpca objcopy --compress-debug-sections debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug chmod 0644 -- debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug dh_strip -a install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/86/a14e2f8165842884e1822ae7ac0102e613efc4.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/86/a14e2f8165842884e1822ae7ac0102e613efc4.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/lib/eigensoft/smarteigenstrat objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/86/a14e2f8165842884e1822ae7ac0102e613efc4.debug debian/eigensoft/usr/lib/eigensoft/smarteigenstrat install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/fa objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/lib/eigensoft/smartpca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/fa/676716530c38519327381e26edc41a13c179fa.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/fa/676716530c38519327381e26edc41a13c179fa.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/lib/eigensoft/smartpca objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/fa/676716530c38519327381e26edc41a13c179fa.debug debian/eigensoft/usr/lib/eigensoft/smartpca install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/baseprog debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ab/a490883092f053aff27bd42219af53cad25d47.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ab/a490883092f053aff27bd42219af53cad25d47.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/baseprog objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/ab/a490883092f053aff27bd42219af53cad25d47.debug debian/eigensoft/usr/bin/baseprog install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/dd objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/convertf debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/dd/07462aaf02fdb15032da2faf98273a749e12c7.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/dd/07462aaf02fdb15032da2faf98273a749e12c7.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/convertf objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/dd/07462aaf02fdb15032da2faf98273a749e12c7.debug debian/eigensoft/usr/bin/convertf install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pca debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/58/2b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/58/2b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pca objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/58/2b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe.debug debian/eigensoft/usr/bin/pca install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/eigenstratQTL debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/83/77cda0c6d85656ee823c2ef800c61aed3767e7.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/83/77cda0c6d85656ee823c2ef800c61aed3767e7.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/eigenstratQTL objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/83/77cda0c6d85656ee823c2ef800c61aed3767e7.debug debian/eigensoft/usr/bin/eigenstratQTL install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/80 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/smartrel debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/80/4b23ae539e982c07bc7cd3d20503c082fd5b54.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/80/4b23ae539e982c07bc7cd3d20503c082fd5b54.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/smartrel objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/80/4b23ae539e982c07bc7cd3d20503c082fd5b54.debug debian/eigensoft/usr/bin/smartrel install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/eigenstrat debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/54/44b2d24f1cc7906dd4562f92faf018e0ca5e0d.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/54/44b2d24f1cc7906dd4562f92faf018e0ca5e0d.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/eigenstrat objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/54/44b2d24f1cc7906dd4562f92faf018e0ca5e0d.debug debian/eigensoft/usr/bin/eigenstrat install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/twstats debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/8a/d4f5d1b6861daa9bfa45570c1d237ac7b72e7a.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/8a/d4f5d1b6861daa9bfa45570c1d237ac7b72e7a.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/twstats objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/8a/d4f5d1b6861daa9bfa45570c1d237ac7b72e7a.debug debian/eigensoft/usr/bin/twstats install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/mergeit debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99/c677f38d5485b40cd96966b126f9d290970900.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99/c677f38d5485b40cd96966b126f9d290970900.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/mergeit objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/99/c677f38d5485b40cd96966b126f9d290970900.debug debian/eigensoft/usr/bin/mergeit install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/eigensoft/usr/bin/pcatoy debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/0b/7a7ffe7a89b2943f10cca1e1963edf69815c9c.debug chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/0b/7a7ffe7a89b2943f10cca1e1963edf69815c9c.debug strip --remove-section=.comment --remove-section=.note debian/eigensoft/usr/bin/pcatoy objcopy --add-gnu-debuglink debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.build-id/0b/7a7ffe7a89b2943f10cca1e1963edf69815c9c.debug debian/eigensoft/usr/bin/pcatoy install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/eigensoft/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/eigensoft/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/eigensoft/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/eigensoft/usr/lib/debug install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/usr/share/doc ln -s eigensoft debian/.debhelper/eigensoft/dbgsym-root/usr/share/doc/eigensoft-dbgsym install -m0755 -d debian/.debhelper/eigensoft dh_makeshlibs -a rm -f debian/eigensoft/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/eigensoft/DEBIAN dpkg-shlibdeps -Tdebian/eigensoft.substvars debian/eigensoft/usr/lib/eigensoft/smarteigenstrat debian/eigensoft/usr/lib/eigensoft/smartpca debian/eigensoft/usr/bin/baseprog debian/eigensoft/usr/bin/convertf debian/eigensoft/usr/bin/pca debian/eigensoft/usr/bin/eigenstratQTL debian/eigensoft/usr/bin/smartrel debian/eigensoft/usr/bin/eigenstrat debian/eigensoft/usr/bin/twstats debian/eigensoft/usr/bin/mergeit debian/eigensoft/usr/bin/pcatoy dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/lib/eigensoft/smartpca was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb install -m0755 -d debian/eigensoft/DEBIAN dh_gencontrol install -m0755 -d debian/eigensoft/DEBIAN echo misc:Depends= >> debian/eigensoft.substvars echo misc:Pre-Depends= >> debian/eigensoft.substvars install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/DEBIAN dpkg-gencontrol -peigensoft -ldebian/changelog -Tdebian/eigensoft.substvars -cdebian/control -Pdebian/.debhelper/eigensoft/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=eigensoft-dbgsym "-DDepends=eigensoft (= \${binary:Version})" "-DDescription=debug symbols for eigensoft" "-DBuild-Ids=0b7a7ffe7a89b2943f10cca1e1963edf69815c9c 5444b2d24f1cc7906dd4562f92faf018e0ca5e0d 582b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe 804b23ae539e982c07bc7cd3d20503c082fd5b54 8377cda0c6d85656ee823c2ef800c61aed3767e7 86a14e2f8165842884e1822ae7ac0102e613efc4 8ad4f5d1b6861daa9bfa45570c1d237ac7b72e7a 99c677f38d5485b40cd96966b126f9d290970900 aba490883092f053aff27bd42219af53cad25d47 dd07462aaf02fdb15032da2faf98273a749e12c7 fa676716530c38519327381e26edc41a13c179fa" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/control dpkg-gencontrol -peigensoft -ldebian/changelog -Tdebian/eigensoft.substvars -cdebian/control -Pdebian/eigensoft chmod 0644 -- debian/eigensoft/DEBIAN/control dh_md5sums install -m0755 -d debian/eigensoft/DEBIAN cd debian/eigensoft >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/eigensoft/DEBIAN/md5sums install -m0755 -d debian/.debhelper/eigensoft/dbgsym-root/DEBIAN cd debian/.debhelper/eigensoft/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/eigensoft .. dpkg-deb --root-owner-group --build debian/.debhelper/eigensoft/dbgsym-root .. dpkg-deb: building package 'eigensoft-dbgsym' in '../eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb'. dpkg-deb: building package 'eigensoft' in '../eigensoft_8.0.0+dfsg-2_amd64.deb'. dpkg-genbuildinfo -O../eigensoft_8.0.0+dfsg-2_amd64.buildinfo dpkg-genchanges -O../eigensoft_8.0.0+dfsg-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-06-30T10:40:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 30 Jun 2025 10:40:46 +0000 | +------------------------------------------------------------------------------+ eigensoft_8.0.0+dfsg-2_amd64.changes: ------------------------------------- Format: 1.8 Date: Wed, 31 Jan 2024 19:16:19 +0100 Source: eigensoft Binary: eigensoft eigensoft-dbgsym Architecture: source amd64 Version: 8.0.0+dfsg-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: eigensoft - reduction of population bias for genetic analyses Closes: 1045139 Changes: eigensoft (8.0.0+dfsg-2) unstable; urgency=medium . * Fix download filename in watch file * Standards-Version: 4.6.2 (routine-update) * Change interpreter PATH only in debian dir not in upstream source Closes: #1045139 Checksums-Sha1: 17921df07c03e24b21846847c66dbc4915019ff3 1224 eigensoft_8.0.0+dfsg-2.dsc 1956f229583dfd3cab5744b06ebfd3fe511350eb 6240 eigensoft_8.0.0+dfsg-2.debian.tar.xz e373a1b685dbdc59b5265ae2029041f98bde0fa2 3214996 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb 7c124caafccc98e9e5e126aef073c968ecd4c185 5845 eigensoft_8.0.0+dfsg-2_amd64.buildinfo 0f6bfcd3442ae23e36c84f7ad1e0e2e6402f90ae 519700 eigensoft_8.0.0+dfsg-2_amd64.deb Checksums-Sha256: 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+------------------------------------------------------------------------------+ | Buildinfo Mon, 30 Jun 2025 10:40:47 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: eigensoft Binary: eigensoft eigensoft-dbgsym Architecture: amd64 source Version: 8.0.0+dfsg-2 Checksums-Md5: 522b79631b0f8b9aae1922790677f2ac 1224 eigensoft_8.0.0+dfsg-2.dsc 8e71d8e55e157504ea2892c1164b26d2 3214996 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb f54869569dc5ca9f74f2fa1eac5cf40d 519700 eigensoft_8.0.0+dfsg-2_amd64.deb Checksums-Sha1: 17921df07c03e24b21846847c66dbc4915019ff3 1224 eigensoft_8.0.0+dfsg-2.dsc e373a1b685dbdc59b5265ae2029041f98bde0fa2 3214996 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb 0f6bfcd3442ae23e36c84f7ad1e0e2e6402f90ae 519700 eigensoft_8.0.0+dfsg-2_amd64.deb Checksums-Sha256: 4cf7ca1b9d00e0a208132ed5b0ec2d8d42bf3a60b7c140afe51b417969d54bd2 1224 eigensoft_8.0.0+dfsg-2.dsc ae81240d9e0bdbe45e36c2ae1899eab4ca2dfb5908168c45295b93965a21c671 3214996 eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb 2d711323abdd70a931077a915fd226c9659111a87a0aec1ac7df36a2d9a56914 519700 eigensoft_8.0.0+dfsg-2_amd64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 30 Jun 2025 10:40:46 +0000 Build-Path: /build/eigensoft-ZOGBFE/eigensoft-8.0.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), gfortran (= 4:14.2.0-1), gfortran-14 (= 14.2.0-19), gfortran-14-x86-64-linux-gnu (= 14.2.0-19), gfortran-x86-64-linux-gnu (= 4:14.2.0-1), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblas-dev (= 3.12.1-2), libblas3 (= 3.12.1-2), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran-14-dev (= 14.2.0-19), libgfortran5 (= 14.2.0-19), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgsl-dev (= 2.8+dfsg-5), libgsl28 (= 2.8+dfsg-5), libgslcblas0 (= 2.8+dfsg-5), libhwasan0 (= 14.2.0-19), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblapack-dev (= 3.12.1-2), liblapack3 (= 3.12.1-2), liblapacke (= 3.12.1-2), liblapacke-dev (= 3.12.1-2), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtinfo6 (= 6.5+20250216-2), libtmglib-dev (= 3.12.1-2), libtmglib3 (= 3.12.1-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1706724979" +------------------------------------------------------------------------------+ | Package contents Mon, 30 Jun 2025 10:40:47 +0000 | +------------------------------------------------------------------------------+ eigensoft-dbgsym_8.0.0+dfsg-2_amd64.deb --------------------------------------- new Debian package, version 2.0. size 3214996 bytes: control archive=1096 bytes. 799 bytes, 12 lines control 1252 bytes, 12 lines md5sums Package: eigensoft-dbgsym Source: eigensoft Version: 8.0.0+dfsg-2 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 4594 Depends: eigensoft (= 8.0.0+dfsg-2) Section: debug Priority: optional Description: debug symbols for eigensoft Build-Ids: 0b7a7ffe7a89b2943f10cca1e1963edf69815c9c 5444b2d24f1cc7906dd4562f92faf018e0ca5e0d 582b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe 804b23ae539e982c07bc7cd3d20503c082fd5b54 8377cda0c6d85656ee823c2ef800c61aed3767e7 86a14e2f8165842884e1822ae7ac0102e613efc4 8ad4f5d1b6861daa9bfa45570c1d237ac7b72e7a 99c677f38d5485b40cd96966b126f9d290970900 aba490883092f053aff27bd42219af53cad25d47 dd07462aaf02fdb15032da2faf98273a749e12c7 fa676716530c38519327381e26edc41a13c179fa drwxr-xr-x root/root 0 2024-01-31 18:16 ./ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/0b/ -rw-r--r-- root/root 200128 2024-01-31 18:16 ./usr/lib/debug/.build-id/0b/7a7ffe7a89b2943f10cca1e1963edf69815c9c.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/54/ -rw-r--r-- root/root 16896 2024-01-31 18:16 ./usr/lib/debug/.build-id/54/44b2d24f1cc7906dd4562f92faf018e0ca5e0d.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/58/ -rw-r--r-- root/root 205472 2024-01-31 18:16 ./usr/lib/debug/.build-id/58/2b5ffb06021ebaaf008e765e0c7a1b0d2cd0fe.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/80/ -rw-r--r-- 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./usr/lib/debug/.build-id/ab/a490883092f053aff27bd42219af53cad25d47.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/dd/ -rw-r--r-- root/root 593080 2024-01-31 18:16 ./usr/lib/debug/.build-id/dd/07462aaf02fdb15032da2faf98273a749e12c7.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.build-id/fa/ -rw-r--r-- root/root 788312 2024-01-31 18:16 ./usr/lib/debug/.build-id/fa/676716530c38519327381e26edc41a13c179fa.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 24072 2024-01-31 18:16 ./usr/lib/debug/.dwz/x86_64-linux-gnu/eigensoft.debug drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/share/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-01-31 18:16 ./usr/share/doc/eigensoft-dbgsym -> eigensoft eigensoft_8.0.0+dfsg-2_amd64.deb -------------------------------- new Debian package, version 2.0. size 519700 bytes: control archive=3952 bytes. 1155 bytes, 20 lines control 16709 bytes, 204 lines md5sums Package: eigensoft Version: 8.0.0+dfsg-2 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 3921 Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libgsl28 (>= 2.8+dfsg), liblapack3 | liblapack.so.3, liblapacke (>= 3.12.1), perl:any Recommends: gnuplot Section: science Priority: optional Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Description: reduction of population bias for genetic analyses The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes. drwxr-xr-x root/root 0 2024-01-31 18:16 ./ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/ drwxr-xr-x root/root 0 2024-01-31 18:16 ./usr/bin/ -rwxr-xr-x root/root 420400 2024-01-31 18:16 ./usr/bin/baseprog -rwxr-xr-x root/root 432824 2024-01-31 18:16 ./usr/bin/convertf -rwxr-xr-x root/root 18672 2024-01-31 18:16 ./usr/bin/eigenstrat -rwxr-xr-x root/root 18672 2024-01-31 18:16 ./usr/bin/eigenstratQTL -rwxr-xr-x root/root 1462 2024-01-31 18:16 ./usr/bin/evec2pca -rwxr-xr-x root/root 2311 2024-01-31 18:16 ./usr/bin/evec2pca-ped lrwxrwxrwx root/root 0 2024-01-31 18:16 ./usr/bin/gc-eigensoft -> ../lib/debian-med/bin/gc.perl -rwxr-xr-x root/root 412256 2024-01-31 18:16 ./usr/bin/mergeit -rwxr-xr-x root/root 145648 2024-01-31 18:16 ./usr/bin/pca -rwxr-xr-x root/root 137456 2024-01-31 18:16 ./usr/bin/pcatoy -rwxr-xr-x root/root 5702 2024-01-31 18:16 ./usr/bin/ploteig -rwxr-xr-x 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 30 Jun 2025 10:40:47 +0000 | +------------------------------------------------------------------------------+ Purging /build/eigensoft-ZOGBFE Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 30 Jun 2025 10:40:49 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 30860 Build-Time: 30 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 6 Job: /srv/debomatic/incoming/eigensoft_8.0.0+dfsg-2.dsc Machine Architecture: amd64 Package: eigensoft Package-Time: 42 Source-Version: 8.0.0+dfsg-2 Space: 30860 Status: successful Version: 8.0.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2025-06-30T10:40:46Z Build needed 00:00:42, 30860k disk space