sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | debian-med 3.9.0 (amd64) Mon, 30 Jun 2025 06:56:54 +0000 | +==============================================================================+ Package: debian-med Version: 3.9.0 Source Version: 3.9.0 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 30 Jun 2025 06:56:54 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.9.0 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup debian-med_3.9.0 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 30 Jun 2025 06:56:54 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:2 http://localhost:3142/debian sid InRelease [208 kB] Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Get:3 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2025-06-30-0204.28-F-2025-06-30-0204.28.pdiff [2990 B] Get:4 http://localhost:3142/debian sid/main Sources T-2025-06-30-0204.28-F-2025-06-30-0204.28.pdiff [2990 B] Hit:5 http://deb.debian.org/debian unstable InRelease Fetched 275 kB in 4s (64.6 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 30 Jun 2025 06:57:00 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/debian-med_3.9.0.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 30 Jun 2025 06:57:00 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, blends-dev (>= 0.7.5~) Filtered Build-Depends: debhelper-compat (= 13), build-essential, blends-dev (>= 0.7.5~) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ InRelease Get:2 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ Release [609 B] Ign:3 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ Release.gpg Get:4 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ Sources [644 B] Get:5 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ Packages [663 B] Fetched 1916 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libfile-stripnondeterminism-perl libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-blends python3-charset-normalizer python3-debian python3-minimal python3.13 python3.13-minimal sensible-utils tzdata Suggested packages: autoconf-archive gnu-standards autoconf-doc blends-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-apt-doc python3-psycopg2 python-charset-normalizer-doc zstd python3.13-venv python3.13-doc binfmt-support Recommended packages: python3-psycopg2 curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl lsb-release iso-codes ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev blends-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism distro-info-data dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libexpat1 libfile-stripnondeterminism-perl libjs-jquery libjs-sphinxdoc libjs-underscore libmagic-mgc libmagic1t64 libpipeline1 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libtool libuchardet0 libxml2 m4 man-db media-types netbase po-debconf python-apt-common python3 python3-apt python3-blends python3-charset-normalizer python3-debian python3-minimal python3.13 python3.13-minimal sbuild-build-depends-main-dummy sensible-utils tzdata 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 18.0 MB of archives. After this operation, 69.0 MB of additional disk space will be used. Get:1 copy:/build/debian-med-W6dnJz/resolver-AItZ0e/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [872 B] Get:2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.5-2 [862 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.5-2 [2224 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.4-1 [27.3 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-4 [260 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.5-2 [1956 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.5-2 [757 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.4-1 [10.2 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.4-1 [28.3 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:23 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:30 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:31 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:32 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:33 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:34 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:35 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:36 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:37 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:38 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:39 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:40 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get:41 http://deb.debian.org/debian unstable/main amd64 python-apt-common all 3.0.0 [68.2 kB] Get:42 http://deb.debian.org/debian unstable/main amd64 distro-info-data all 0.64 [6476 B] Get:43 http://deb.debian.org/debian unstable/main amd64 python3-apt amd64 3.0.0 [164 kB] Get:44 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.2-1 [128 kB] Get:45 http://deb.debian.org/debian unstable/main amd64 python3-debian all 1.0.1 [120 kB] Get:46 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get:47 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get:48 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get:49 http://deb.debian.org/debian unstable/main amd64 python3-blends all 0.7.10 [32.4 kB] Get:50 http://deb.debian.org/debian unstable/main amd64 blends-dev all 0.7.10 [26.0 kB] Preconfiguring packages ... Fetched 18.0 MB in 0s (118 MB/s) Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... 23092 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.5-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.5-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_amd64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:amd64 (3.13.5-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 23426 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.4-1_amd64.deb ... Unpacking python3-minimal (3.13.4-1) ... 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Setting up libelf1t64:amd64 (0.192-4) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jun 30 06:57:06 UTC 2025. Universal Time is now: Mon Jun 30 06:57:06 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up python-apt-common (3.0.0) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.5) ... Configuration file '/etc/protocols' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Configuration file '/etc/services' ==> File on system created by you or by a script. ==> File also in package provided by package maintainer. ==> Using current old file as you requested. Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libpython3.13-stdlib:amd64 (3.13.5-2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libpython3-stdlib:amd64 (3.13.4-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up python3.13 (3.13.5-2) ... Setting up python3 (3.13.4-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up python3-apt (3.0.0) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-debian (1.0.1) ... Setting up debhelper (13.24.2) ... Setting up python3-blends (0.7.10) ... Setting up blends-dev (0.7.10) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures Mon, 30 Jun 2025 06:57:08 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 30 Jun 2025 06:57:08 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 blends-dev_0.7.10 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 distro-info-data_0.64 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 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libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libpython3-stdlib_3.13.4-1 libpython3.13-minimal_3.13.5-2 libpython3.13-stdlib_3.13.5-2 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 python-apt-common_3.0.0 python3_3.13.4-1 python3-apt_3.0.0 python3-blends_0.7.10 python3-charset-normalizer_3.4.2-1 python3-debian_1.0.1 python3-minimal_3.13.4-1 python3.13_3.13.5-2 python3.13-minimal_3.13.5-2 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-4 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 30 Jun 2025 06:57:08 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (native) Source: debian-med Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting Architecture: all Version: 3.9.0 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/blends-team/med Vcs-Git: https://salsa.debian.org/blends-team/med.git Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: blends-dev (>= 0.7.5~) Package-List: med-all deb metapackages optional arch=all med-bio deb metapackages optional arch=all med-bio-dev deb metapackages optional arch=all med-cloud deb metapackages optional arch=all med-config deb misc optional arch=all med-data deb metapackages optional arch=all med-dental deb metapackages optional arch=all med-epi deb metapackages optional arch=all med-his deb metapackages optional arch=all med-imaging deb metapackages optional arch=all med-imaging-dev deb metapackages optional arch=all med-laboratory deb metapackages optional arch=all med-oncology deb metapackages optional arch=all med-pharmacy deb metapackages optional arch=all med-physics deb metapackages optional arch=all med-practice deb metapackages optional arch=all med-psychology deb metapackages optional arch=all med-research deb metapackages optional arch=all med-statistics deb metapackages optional arch=all med-tasks deb misc optional arch=all med-tools deb metapackages optional arch=all med-typesetting deb metapackages optional arch=all Checksums-Sha1: 37d4e98d4b48029a8d37ccb66c33afc85c59194a 127232 debian-med_3.9.0.tar.xz Checksums-Sha256: b7d13baf54e78ba6f553ac7c51473df3065dc87eb20fff1bff183c470702ec40 127232 debian-med_3.9.0.tar.xz Files: 1a3b56264856a3083a514830498230aa 127232 debian-med_3.9.0.tar.xz -----BEGIN PGP SIGNATURE----- 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/build/debian-med-W6dnJz/debian-med-3.9.0 dpkg-source: info: unpacking debian-med_3.9.0.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 30 Jun 2025 06:57:08 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.9.0 perl-5.40-throwaway amd64 ----------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network debian-med_3.9.0 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/debian-med-W6dnJz/debian-med-3.9.0 SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-67102229-faa6-44c7-b819-cc842c54eecd SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc dpkg-buildpackage: info: source package debian-med dpkg-buildpackage: info: source version 3.9.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' # call make clean instead of distclean make clean make[2]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' rm -rf tmp rm -f tasks/*~ rm -rf tasksel rm -f packages.txt by_vote packages-sorted.txt rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm make[2]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' make[1]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' debian/rules override_dh_clean make[1]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' # hmmm, that would kill debian/control - so don't do this! # /usr/bin/make -f /usr/share/blends-dev/Makefile clean # Clear apt-get cache rm -rf tmp # Remove backup files from source tarball rm -f tasks/*~ # Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \ rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \ done # rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst # remove auto generated files for config package rm -f debian/med-config.templates debian/med-config.config \ debian/med-config.install debian/med-config.links \ debian/90med-config # remove auto generated debconf template translations rm -rf debian/po # remove possibly remaining debhelper files rm -f debian/med-*.debhelper.log dh_clean make[1]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' dpkg-source -b . dpkg-source: info: using source format '3.0 (native)' dpkg-source: info: building debian-med in debian-med_3.9.0.tar.xz dpkg-source: info: building debian-med in debian-med_3.9.0.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' # do nothing, we just called the make install target in advance # and want to build the packages without network access make[1]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' /usr/share/blends-dev/blend-install-helper dh_install debian-med-tasks.desc usr/share/tasksel/descs make[1]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' debian/rules override_dh_installdocs make[1]: Entering directory '/build/debian-med-W6dnJz/debian-med-3.9.0' dh_installdocs -A README make[1]: Leaving directory '/build/debian-med-W6dnJz/debian-med-3.9.0' dh_installchangelogs dh_installman dh_installdebconf dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.9.0_all.deb'. dpkg-deb: building package 'med-tasks' in '../med-tasks_3.9.0_all.deb'. dpkg-deb: building package 'med-config' in '../med-config_3.9.0_all.deb'. dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.9.0_all.deb'. dpkg-deb: building package 'med-oncology' in '../med-oncology_3.9.0_all.deb'. dpkg-deb: building package 'med-all' in '../med-all_3.9.0_all.deb'. dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.9.0_all.deb'. dpkg-deb: building package 'med-bio' in '../med-bio_3.9.0_all.deb'. dpkg-deb: building package 'med-physics' in '../med-physics_3.9.0_all.deb'. dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.9.0_all.deb'. dpkg-deb: building package 'med-practice' in '../med-practice_3.9.0_all.deb'. dpkg-deb: building package 'med-cloud' in '../med-cloud_3.9.0_all.deb'. dpkg-deb: building package 'med-data' in '../med-data_3.9.0_all.deb'. dpkg-deb: building package 'med-psychology' in '../med-psychology_3.9.0_all.deb'. dpkg-deb: building package 'med-dental' in '../med-dental_3.9.0_all.deb'. dpkg-deb: building package 'med-research' in '../med-research_3.9.0_all.deb'. dpkg-deb: building package 'med-epi' in '../med-epi_3.9.0_all.deb'. dpkg-deb: building package 'med-statistics' in '../med-statistics_3.9.0_all.deb'. dpkg-deb: building package 'med-his' in '../med-his_3.9.0_all.deb'. dpkg-deb: building package 'med-tools' in '../med-tools_3.9.0_all.deb'. dpkg-deb: building package 'med-imaging' in '../med-imaging_3.9.0_all.deb'. dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.9.0_all.deb'. dpkg-genbuildinfo -O../debian-med_3.9.0_amd64.buildinfo dpkg-genchanges -O../debian-med_3.9.0_amd64.changes dpkg-genchanges: info: including full source code in upload dpkg-source --after-build . dpkg-buildpackage: info: full upload; Debian-native package (full source is included) -------------------------------------------------------------------------------- Build finished at 2025-06-30T06:57:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 30 Jun 2025 06:57:19 +0000 | +------------------------------------------------------------------------------+ debian-med_3.9.0_amd64.changes: ------------------------------- Format: 1.8 Date: Mon, 05 May 2025 21:32:16 +0200 Source: debian-med Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting Architecture: source all Version: 3.9.0 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: med-all - Default selection of tasks for Debian Med med-bio - Debian Med bioinformatics packages med-bio-dev - Debian Med packages for development of bioinformatics application med-cloud - Debian Med bioinformatics applications usable in cloud computing med-config - Debian Med general config package med-data - Debian Med drug databases med-dental - Debian Med packages related to dental practice med-epi - Debian Med epidemiology related packages med-his - Debian Med suggestions for Hospital Information Systems med-imaging - Debian Med image processing and visualization packages med-imaging-dev - Debian Med image processing and visualization packages developmen med-laboratory - Debian Med suggestions for medical laboratories med-oncology - Debian Med packages for oncology med-pharmacy - Debian Med packages for pharmaceutical research med-physics - Debian Med packages for medical physicists med-practice - Debian Med packages for practice management med-psychology - Debian Med packages for psychology med-research - Debian Med packages for medical research med-statistics - Debian Med statistics med-tasks - Debian Med tasks for tasksel med-tools - Debian Med several tools med-typesetting - Debian Med support for typesetting and publishing Changes: debian-med (3.9.0) unstable; urgency=medium . * Re-render dependencies (med-research was manually kept) Checksums-Sha1: 0b777926dd638e5a2a32d2d851b4414f5f65d820 2029 debian-med_3.9.0.dsc 37d4e98d4b48029a8d37ccb66c33afc85c59194a 127232 debian-med_3.9.0.tar.xz aa040cba96b1b1d95da48f8d86b9d0867a30ff25 10968 debian-med_3.9.0_amd64.buildinfo 3105620eab42fa72f1c598c0955fc6989f209c43 7248 med-all_3.9.0_all.deb 1a30d16c729e3923d58e72f4fc97b608030a9e43 11700 med-bio-dev_3.9.0_all.deb f99351943baa209fbc67535423597379819d6f86 14512 med-bio_3.9.0_all.deb f38890d161006717d0c24280a36d27eafd806e0d 9996 med-cloud_3.9.0_all.deb f65633fcc291cac2d1e393d09e743f39b757506b 11632 med-config_3.9.0_all.deb 1101f5f93c3d1baa7a21926c178d090281fc7b45 9168 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/build/debian-med-W6dnJz/debian-med-3.9.0 Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), blends-dev (= 0.7.10), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), distro-info-data (= 0.64), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libapt-pkg7.0 (= 3.0.3), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.8-2), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhwasan0 (= 14.2.0-19), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 8.1.3-5), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libpython3-stdlib (= 3.13.4-1), libpython3.13-minimal (= 3.13.5-2), libpython3.13-stdlib (= 3.13.5-2), libquadmath0 (= 14.2.0-19), libreadline8t64 (= 8.2-6), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libxxhash0 (= 0.8.3-2), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), media-types (= 13.0.0), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), netbase (= 6.5), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), po-debconf (= 1.0.21+nmu1), python-apt-common (= 3.0.0), python3 (= 3.13.4-1), python3-apt (= 3.0.0), python3-blends (= 0.7.10), python3-charset-normalizer (= 3.4.2-1), python3-debian (= 1.0.1), python3-minimal (= 3.13.4-1), python3.13 (= 3.13.5-2), python3.13-minimal (= 3.13.5-2), readline-common (= 8.2-6), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-4), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1746473536" +------------------------------------------------------------------------------+ | Package contents Mon, 30 Jun 2025 06:57:19 +0000 | +------------------------------------------------------------------------------+ med-all_3.9.0_all.deb --------------------- new Debian package, version 2.0. size 7248 bytes: control archive=712 bytes. 654 bytes, 13 lines control 198 bytes, 3 lines md5sums Package: med-all Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 14 Recommends: med-bio, med-bio-dev, med-statistics Suggests: med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-tools, med-typesetting Section: metapackages Priority: optional Description: Default selection of tasks for Debian Med This package is part of the Debian Med Pure Blend and installs all tasks for a default installation of this blend. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-all/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-all/README -rw-r--r-- root/root 5425 2025-05-05 19:32 ./usr/share/doc/med-all/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-all/copyright med-bio-dev_3.9.0_all.deb ------------------------- new Debian package, version 2.0. size 11700 bytes: control archive=4428 bytes. 8055 bytes, 14 lines control 426 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio-dev Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread, goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev, libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl, libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiojava-java, libbiojava6-java, libbioparser-dev, libblasr-dev, libbpp-core-dev, libbpp-phyl-dev, libbpp-phyl-omics-dev, libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev, libbpp-seq-dev, libbpp-seq-omics-dev, libcdk-java, libchado-perl, libcifpp-dev, libconsensuscore-dev, libdivsufsort-dev, libedlib-dev, libfast5-dev, libfastahack-dev, libffindex0-dev, libfml-dev, libgatbcore-dev, libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl, libgenome-perl, libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl, libhdf5-dev, libhmsbeagle-dev, libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java, libjloda-java, libkmer-dev, libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev, libncbi6-dev, libncl-dev, libngs-java, libnhgri-blastall-perl, libopenmm-dev, libopenms-dev, libpal-java, libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev, libpbseq-dev, libpdb-redo-dev, libpll-dev, libqes-dev, librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java, librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast0-dev, librostlab3-dev, libsbml5-dev, libseqan2-dev, libseqan3-dev, libseqlib-dev, libslow5-dev, libsmithwaterman-dev, libsnp-sites1-dev, libsort-key-top-perl, libspoa-dev, libsrf-dev, libssm-dev, libssu-dev, libssw-dev, libssw-java, libstaden-read-dev, libstatgen-dev, libswiss-perl, libtabixpp-dev, libthread-pool-dev, libvcflib-dev, libvibrant6-dev, libwfa2-dev, libzerg-perl, libzerg0-dev, mcl, ont-fast5-api, pyfai, python3-airr, python3-bcbio-gff, python3-bioframe, python3-biom-format, python3-biomaj3, python3-biopython, python3-biotools, python3-bx, python3-cgecore, python3-cigar, python3-cooler, python3-corepywrap, python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-dendropy, python3-dnaio, python3-ete3, python3-fast5, python3-freecontact, python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq, python3-intervaltree-bio, python3-kineticstools, python3-mirtop, python3-nanoget, python3-ngs, python3-pairix, python3-pangolearn, python3-parasail, python3-pbcommand, python3-pbconsensuscore, python3-pbcore, python3-peptidebuilder, python3-presto, python3-propka, python3-py2bit, python3-pyabpoa, python3-pyani, python3-pybedtools, python3-pybel, python3-pybigwig, python3-pyfaidx, python3-pyfastx, python3-pymummer, python3-pyranges, python3-pysam, python3-pyspoa, python3-pyvcf, python3-rdkit, python3-ruffus, python3-screed, python3-shasta, python3-skbio, python3-slow5, python3-sqt, python3-streamz, python3-tinyalign, python3-torch, python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase, r-cran-boolnet, r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast, r-cran-genetics, r-cran-gprofiler2, r-cran-haplo.stats, r-cran-phangorn, r-cran-pheatmap, r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml, r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake, toil Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev, cwlformat, cwltest, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev, libbifrost-dev, libbiojava4-java, libbiosoup-dev, libbtllib-dev, libcapsule-maven-nextflow-java, libconcurrentqueue-dev, libdisorder-dev, libfast-perl, libforester-java, libfreecontact-dev, libfreecontact-doc, libfreecontact-perl, libgatk-bwamem-java, libgatk-bwamem-jni, libgatk-fermilite-java, libgatk-fermilite-jni, libgatk-native-bindings-java, libgenomicsdb-dev, libgenomicsdb-java, libicb-utils-java, libmaus2-dev, libmilib-java, libminimap-dev, libmmblib-dev, libmodhmm-dev, libnexml-java, libngs-sdk-dev, libpbcopper-dev, libpwiz-dev, libqcpp-dev, librelion-dev, libroadrunner-dev, librostlab-blast-doc, librostlab-doc, libsavvy-dev, libsuma-dev, libsvmloc-dev, libswarm2-dev, libterraces-dev, libtfbs-perl, libvbz-hdf-plugin-dev, libxxsds-dynamic-dev, nim-hts-dev, nim-kexpr-dev, nim-lapper-dev, octace-bioinfo, python-biopython-doc, python3-alignlib, python3-anndata, python3-bcbio, python3-bel-resources, python3-bioblend, python3-biopython-sql, python3-cgelib, python3-cobra, python3-cogent3, python3-compclust, python3-conda-package-streaming, python3-consensuscore2, python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy, python3-loompy, python3-misopy, python3-ncls, python3-networkx, python3-pycosat, python3-pyflow, python3-roadrunner, python3-scanpy, python3-seqcluster, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun, q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser, r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics, r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap, r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz, r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage, r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation, r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation, r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight, r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools, r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv, r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc, r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook, r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp, ruby-rgfa, vdjtools Section: metapackages Priority: optional Description: Debian Med packages for development of bioinformatics applications This metapackage will install Debian packages which might be helpful for development of applications for biological research. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-bio-dev -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 371 2025-05-05 19:32 ./usr/share/blends/med/menu/libncbi6-dev drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2025-05-05 19:32 ./usr/share/blends/tasks/med/bio-dev drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-bio-dev/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-bio-dev/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-bio-dev/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-bio-dev/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-bio-dev/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-bio-dev.1.gz -> med-config.1.gz med-bio_3.9.0_all.deb --------------------- new Debian package, version 2.0. size 14512 bytes: control archive=6596 bytes. 11317 bytes, 14 lines control 620 bytes, 9 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-bio Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 44 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: abacas, abpoa, abyss, adapterremoval, adun-core, aegean, aevol, alien-hunter, alter-sequence-alignment, altree, amap-align, ampliconnoise, andi, any2fasta, aragorn, arden, ariba, art-nextgen-simulation-tools, artemis, artfastqgenerator, assembly-stats, assemblytics, atac, ataqv, atropos, augur, augustus, autodock, autodock-vina, autogrid, avogadro, axe-demultiplexer, baitfisher, bali-phy, bamclipper, bamkit, bamtools, bandage, barrnap, bbmap, bcalm, bcftools, beads, beagle, beast-mcmc, beast2-mcmc, bedops, bedtools, belvu, berkeley-express, bifrost, bio-eagle, bio-rainbow, bio-tradis, bio-vcf, bioawk, biobambam2, biosyntax, bitseq, blasr, blixem, bolt-lmm, bowtie, bowtie2, boxshade, bppphyview, bppsuite, brig, btllib-tools, busco, bustools, bwa, cassiopee, cat-bat, cct, cd-hit, cdbfasta, centrifuge, cgview, changeo, chimeraslayer, chromhmm, chromimpute, cif-tools, circos, clearcut, clonalframe, clonalframeml, clonalorigin, clustalo, clustalw, clustalx, cnvkit, codonw, comet-ms, concavity, conservation-code, coot, covtobed, crac, csb, ctffind, cutadapt, cutesv, daligner, damapper, datamash, dawg, dazzdb, deblur, delly, density-fitness, dextractor, dialign, dialign-tx, diamond-aligner, discosnp, disulfinder, dnaclust, dnarrange, dotter, drop-seq-tools, dssp, dwgsim, e-mem, ea-utils, ecopcr, edtsurf, eigensoft, elph, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, emmax, estscan, examl, exonerate, fasta3, fastahack, fastani, fastaq, fastdnaml, fastlink, fastml, fastp, fastq-pair, fastqc, fastqtl, fasttree, ffindex, figtree, filtlong, fitgcp, flash, flexbar, flye, fml-asm, freebayes, freecontact, fsa, fsm-lite, garli, garlic, gasic, gatb-core, gbrowse, gdpc, gemma, genometester, genomethreader, genometools, genomicsdb-tools, gentle, gff2aplot, gff2ps, gffread, ggd-utils, ghmm, glam2, gmap, grabix, graphlan, grinder, gromacs, gsort, gubbins, gwama, harvest-tools, hhsuite, hinge, hisat2, hmmer, hmmer2, hyphy-mpi | hyphy-pt, idba, igblast, igor, igv, indelible, infernal, insilicoseq, ipig, iqtree, iva, jaligner, jalview, jellyfish, jellyfish1, jmol, kalign, kallisto, kaptive, kineticstools, king-probe, kissplice, kleborate, kma, kmc, kmer, kmerresistance, kraken, kraken2, lagan, lamarc, lamassemble, lambda-align, lambda-align2, last-align, lastz, leaff, lefse, librg-utils-perl, libvcflib-tools, lighter, loki, ltrsift, lucy, lumpy-sv, macs, macsyfinder, maffilter, mafft, malt, mapdamage, mapsembler2, maq, maqview, mash, massxpert, mauve-aligner, mcaller, mecat2, megadepth, megahit, megan-ce, melting, meryl, metabat, metaeuk, metaphlan, metastudent, mhap, microbegps, microbiomeutil, minexpert2, minia, miniasm, minimac4, minimap, minimap2, mipe, mira-assembler, mirtop, mlv-smile, mmb, mmseqs2, mothur, mptp, mrbayes, multiqc, mummer, murasaki | murasaki-mpi, muscle, muscle3, mustang, nanofilt, nanolyse, nanopolish, nanosv, nast-ier, ncbi-acc-download, ncbi-blast+, ncbi-blast+-legacy, ncbi-entrez-direct, ncbi-epcr, ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncl-tools, ncoils, neobio, ngmlr, njplot, norsnet, norsp, ntcard, nxtrim, obitools, openms, optimir, pal2nal, paleomix, paml, paraclu, parasail, parsinsert, parsnp, patman, pbdagcon, pbsim, pdb2pqr, perlprimer, perm, pftools, phast, phipack, phybin, phylip, phylonium, phyml, physamp, phyutility, phyx, picard-tools, picopore, pigx-rnaseq, piler, pilercr, pilon, pinfish, pique, pirs, pizzly, placnet, plasmidid, plasmidomics, plasmidseeker, plast, plink, plink1.9, plink2, plip, poa, populations, porechop, poretools, prank, predictnls, presto, prime-phylo, primer3, prinseq-lite, proalign, probabel, probalign, probcons, proda, prodigal, profbval, profisis, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net, profphd-utils, proftmb, progressivemauve, prokka, proteinortho, prottest, provean, pscan-chip, pscan-tfbs, psortb, pullseq, pycoqc, pycorrfit, pyensembl, pyfastx, pymol, pyscanfcs, python3-biomaj3-daemon, python3-bioxtasraw, python3-emperor, python3-geneimpacts, python3-gffutils, python3-pairtools, python3-pybedtools, python3-sqt, python3-treetime, pyvcf, qcat, qcumber, qtltools, quicktree, quorum, qutemol, r-bioc-annotate, r-bioc-biostrings, r-bioc-cner, r-bioc-cummerbund, r-bioc-deseq2, r-bioc-ebseq, r-bioc-edger, r-bioc-genefilter, r-bioc-geoquery, r-bioc-hilbertvis, r-bioc-htsfilter, r-bioc-impute, r-bioc-limma, r-bioc-megadepth, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-mutationalpatterns, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-rtracklayer, r-bioc-scater, r-bioc-tfbstools, r-cran-adegenet, r-cran-adephylo, r-cran-alakazam, r-cran-ape, r-cran-bio3d, r-cran-distory, r-cran-kaos, r-cran-phangorn, r-cran-phytools, r-cran-pscbs, r-cran-qtl, r-cran-rotl, r-cran-samr, r-cran-sdmtools, r-cran-seqinr, r-cran-seurat, r-cran-shazam, r-cran-spp, r-cran-tcr, r-cran-tigger, r-cran-treespace, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, r-cran-wgcna, r-other-ascat, r-other-mott-happy.hbrem, r-other-rajewsky-dropbead, racon, radiant, ragout, rambo-k, rampler, rapmap, rasmol, raster3d, rate4site, raxml, ray, rdp-alignment, rdp-readseq, readseq, reapr, recan, relion, relion-gui, repeatmasker-recon, reprof, resfinder, rna-star, rnahybrid, roary, rockhopper, roguenarok, rsem, rtax, runcircos-gui, saint, salmid, salmon, sambamba, samblaster, samclip, samtools, savvy-util, scoary, scrappie, scrm, scythe, seaview, seer, segemehl, seqan-apps, seqan-needle, seqan-raptor, seqkit, seqmagick, seqprep, seqsero, seqtk, sga, shasta, shovill, sibelia, sibsim4, sickle, sigma-align, sim4, sim4db, simka, simkamin, ska, skesa, skewer, smalt, smithwaterman, smrtanalysis, snap, snap-aligner, sniffles, snippy, snp-sites, snpeff, snpomatic, snpsift, soapaligner, soapdenovo, soapdenovo2, soapsnp, sortmerna, sourmash, spaced, spades, spaln, spoa, sprai, spread-phy, sra-toolkit, srst2, ssake, sspace, ssw-align, stacks, staden, staden-io-lib-utils, stringtie, subread, suitename, sumaclust, sumatra, sumtrees, surankco, surpyvor, survivor, svim, swarm, sweed, t-coffee, tabix, tantan, terraphast, theseus, thesias, tiddit, tigr-glimmer, tm-align, tnseq-transit, toil, tombo, tophat-recondition, topp, toppred, tortoize, trace2dbest, tracetuner, transdecoder, transrate-tools, transtermhp, tree-puzzle | tree-ppuzzle, treeview, treeviewx, trf, trim-galore, trimmomatic, trinityrnaseq, tvc, twopaco, uc-echo, ugene, uncalled, unicycler, unikmer, varna, vcfanno, vcftools, velvet | velvet-long, velvetoptimiser, veryfasttree, virulencefinder, vmatch, vsearch, vt, wham-align, wigeon, wise, xpore, yaha, yanagiba, yanosim Suggests: acacia, acedb-other, adun.app, agat, amos-assembler, amoscmp, anfo, annovar, apollo, arachne, arb, arvados, asap, axparafit, axpcoords, bagpipe, ballview, bambus, bax2bam, bcbio, biceps, big-blast, bigsdb, bismark, blat, blimps-utils, blobology, braker, btk-core, cactus, caftools, canu, card-rgi, catfishq, cdna-db, cellprofiler, cinema, circlator, cluster3, cmap, conda-package-handling, condetri, contrafold, contralign, copycat, covpipe, crossbow, crux-toolkit, cufflinks, cytoscape, dascrubber, dazzle, deepbinner, deepnano, dendroscope, diann, dnapi, e-hive, ecell, embassy-phylip, emboss-explorer, ensembl, ensembl-vep, estferret, euler-sr, euler2, exabayes, exalt, excavator, ffp, fieldbioinformatics, figaro, flappie, forester, forge, galaxy, gamgi, gatk, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gerp++, getdata, ghemical, glimmerhmm, gmv, gramalign, graphbin, graphmap2, haploview, hawkeye, hilive, htqc, hts-nim-tools, idefix, idseq-bench, illustrate, inspect, jbrowse, jigsaw, jmodeltest, kempbasu, khmer, libhdf5-dev, libhnswlib-dev, libpwiz-tools, lofreq, mach-haplotyper, mage2tab, maker2, manta, marginphase, martj, maude, maxd, medaka, meme, mesquite, metabit, metarep, metastudent-data, metastudent-data-2, migrate, mindthegap, minimus, mirbase, modeller, molekel, mosaik-aligner, mosdepth, mpsqed, mrs, msatfinder, mugsy, mummergpu, mview, nano-snakemake, nanocall, nanocomp, nanook, nanoplot, nanostat, ncbi-magicblast, nextsv, ngila, ngsqctoolkit, nw-align, oases, obo-edit, oligoarrayaux, omegamap, oncofuse, operondb, optitype, paipline, pangolin, partigene, partitionfinder, patristic, pbhoney, pbjelly, pbsuite, pcma, pfaat, phagefinder, phpphylotree, phylographer, phylophlan, phyloviz-core, phylowin, pigx-scrnaseq, pipasic, plato, pomoxis, pplacer, profit, profphd, prot4est, psipred, pssh2, pufferfish, purple, pyrophosphate-tools, python3-alignlib, python3-anndata, python3-cgecore, python3-cogent3, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-htseq, python3-intake, python3-loompy, python3-nanoget, python3-nanomath, python3-ncls, python3-orange, python3-py2bit, python3-pybel, python3-pychopper, python3-pyfaidx, python3-pyflow, python3-pyranges, python3-pyrle, python3-pysam, python3-tinyalign, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-taxa, q2-types, q2-vsearch, q2cli, q2templates, qiime, qtlcart, qtlreaper, qualimap, quast, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-beachmat, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-bitseq, r-bioc-ctc, r-bioc-dnacopy, r-bioc-ensembldb, r-bioc-experimenthub, r-bioc-geneplotter, r-bioc-genomicalignments, r-bioc-genomicfiles, r-bioc-genomicranges, r-bioc-go.db, r-bioc-grohmm, r-bioc-gviz, r-bioc-isoformswitchanalyzer, r-bioc-mofa2, r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, r-bioc-qusage, r-bioc-savr, r-bioc-singlecellexperiment, r-bioc-structuralvariantannotation, r-bioc-tximport, r-cran-amap, r-cran-biwt, r-cran-boolnet, r-cran-corrplot, r-cran-drinsight, r-cran-dynamictreecut, r-cran-epir, r-cran-fitdistrplus, r-cran-forecast, r-cran-genabel, r-cran-gprofiler2, r-cran-minerva, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pheatmap, r-cran-qqman, r-cran-rcpphnsw, r-cran-rentrez, r-cran-sctransform, r-other-apmswapp, r-other-fastbaps, raxml-ng, rbs-finder, rdp-classifier, readucks, relion-cuda, relion-gui-cuda, repeatmasker, resfinder-db, roadtrips, roche454ace2caf, rosa, rose, rsat, sailfish, sap, science-workflow, sepp, seq-gen, seq-seq-pan, seqcluster, seqwish, sift, signalalign, sina, sistr, situs, solvate, sparta, splitstree, ssaha, strap, strap-base, strelka, tab2mage, tacg, tandem-genotypes, taverna, taxinspector, tetra, tide, tigr-glimmer-mg, tipp, tn-seqexplorer, tophat, treebuilder3d, tripal, trnascan-se, twain, ufasta, umap, umap-learn, umis, unc-fish, uniprime, varmatch, varscan, vdjtools, vg, vienna-rna, viewmol, vmd, x-tandem-pipeline, zodiac-zeden Section: metapackages Priority: optional Description: Debian Med bioinformatics packages This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-bio -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 2599 2025-05-05 19:32 ./usr/share/blends/med/menu/blast2 -rw-r--r-- root/root 4032 2025-05-05 19:32 ./usr/share/blends/med/menu/ncbi-tools-bin -rw-r--r-- root/root 1220 2025-05-05 19:32 ./usr/share/blends/med/menu/ncbi-tools-x11 drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2025-05-05 19:32 ./usr/share/blends/tasks/med/bio drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-bio/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-bio/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-bio/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-bio/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-bio/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 89 2025-05-05 19:32 ./usr/share/lintian/overrides/med-bio drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-bio.1.gz -> med-config.1.gz med-cloud_3.9.0_all.deb ----------------------- new Debian package, version 2.0. size 9996 bytes: control archive=2892 bytes. 2181 bytes, 16 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-cloud Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: abyss, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, veryfasttree, wise Suggests: acedb-other, anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira, python3-cogent3, qiime Section: metapackages Priority: optional Description: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-cloud -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2025-05-05 19:32 ./usr/share/blends/tasks/med/cloud drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-cloud/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-cloud/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-cloud/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-cloud/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-cloud/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-cloud.1.gz -> med-config.1.gz med-config_3.9.0_all.deb ------------------------ new Debian package, version 2.0. size 11632 bytes: control archive=3408 bytes. 87 bytes, 3 lines conffiles 1416 bytes, 54 lines * config #!/bin/sh 1591 bytes, 40 lines control 396 bytes, 6 lines md5sums 1355 bytes, 46 lines * postinst #!/bin/sh 214 bytes, 8 lines * postrm #!/bin/sh 2717 bytes, 48 lines templates Package: med-config Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 41 Depends: adduser, debconf (>= 0.5) | debconf-2.0, menu, blends-common (>= 0.6.15) Conflicts: med-common Replaces: med-common Provides: med-common Section: misc Priority: optional Description: Debian Med general config package This package provides the basic infrastructure of all metapackages assembled by the Debian Med team. . This metapackage provides common features shared between the different metapackages of the project. Moreover it introduces a method to handle a 'med' system users group using debconf. . The Debian Med Project include metapackages for different tasks, which are: * applications for microbiological research and support for development of biological applications * cloud computing in microbiological research * drug databases * dental surgery practice * epidemiology and medical statistics * image processing and support for imaging application development * pharmacological research * radiation oncology, diagnostic imaging and related fields * medical practice * psychological research and practice * rehabilitation * typesetting and publishing * miscellaneous tools . Each task is represented by a metapackage. Metapackages do not contain executable programs, but rather dependencies from other packages. This way you will conveniently get all free medical software which is available for Debian by simply installing the relevant metapackage drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/apt/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/apt/apt.conf.d/ -rw-r--r-- root/root 255 2025-05-05 19:32 ./etc/apt/apt.conf.d/90med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/blends/med/ -rw-r--r-- root/root 260 2025-05-05 19:32 ./etc/blends/med/med.conf drwxr-xr-x root/root 0 2025-05-05 19:32 ./etc/profile.d/ -rw-r--r-- root/root 905 2025-05-05 19:32 ./etc/profile.d/debian-med.sh drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ -rwxr-xr-x root/root 186 2025-05-05 19:32 ./usr/bin/med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/lib/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/lib/tasksel/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/lib/tasksel/med-task-files -> ../../share/blends/blend-task-lister drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-config/ -rw-r--r-- root/root 311 2025-05-05 19:32 ./usr/share/doc/med-config/NEWS.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-config/README -rw-r--r-- root/root 5426 2025-05-05 19:32 ./usr/share/doc/med-config/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-config/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ -rw-r--r-- root/root 328 2025-05-05 19:32 ./usr/share/man/man1/med-config.1.gz med-data_3.9.0_all.deb ---------------------- new Debian package, version 2.0. size 9168 bytes: control archive=2060 bytes. 534 bytes, 15 lines control 338 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-data Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: python3-hl7 Suggests: drugref.org, freediams, freemedforms-freedata, oscar Section: metapackages Priority: optional Description: Debian Med drug databases This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-data -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2025-05-05 19:32 ./usr/share/blends/tasks/med/data drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-data/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-data/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-data/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-data/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-data/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-data.1.gz -> med-config.1.gz med-dental_3.9.0_all.deb ------------------------ new Debian package, version 2.0. size 9136 bytes: control archive=2032 bytes. 493 bytes, 13 lines control 348 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-dental Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: entangle, imagetooth Section: metapackages Priority: optional Description: Debian Med packages related to dental practice This metapackage contains dependencies for a collection of software which might be helpful for dentists to manage their practice. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-dental -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 7 2025-05-05 19:32 ./usr/share/blends/tasks/med/dental drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-dental/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-dental/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-dental/README.Debian -rw-r--r-- root/root 5424 2025-05-05 19:32 ./usr/share/doc/med-dental/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-dental/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-dental.1.gz -> med-config.1.gz med-epi_3.9.0_all.deb --------------------- new Debian package, version 2.0. size 9680 bytes: control archive=2400 bytes. 1129 bytes, 17 lines control 403 bytes, 6 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-epi Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: python3-seirsplus, python3-torch, python3-treetime, r-cran-covid19us, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epiestim, r-cran-epir, r-cran-epitools, r-cran-incidence, r-cran-kernelheaping, r-cran-lexrankr, r-cran-prevalence, r-cran-seroincidence, r-cran-sf, r-cran-surveillance Suggests: chime, epifire, netepi-analysis, netepi-collection, python3-epimodels, r-cran-cmprsk, r-cran-covid19, r-cran-msm, r-cran-sjplot, repast, shiny-server, ushahidi Section: metapackages Priority: optional Description: Debian Med epidemiology related packages This metapackage will install tools that are useful in epidemiological research. Several packages making use of the GNU R data language for statistical investigation. It might be a good idea to read the paper "A short introduction to R for Epidemiology" at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-epi -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2025-05-05 19:32 ./usr/share/blends/tasks/med/epi drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-epi/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-epi/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-epi/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-epi/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-epi/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 232 2025-05-05 19:32 ./usr/share/lintian/overrides/med-epi drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-epi.1.gz -> med-config.1.gz med-his_3.9.0_all.deb --------------------- new Debian package, version 2.0. size 9324 bytes: control archive=2204 bytes. 799 bytes, 17 lines control 333 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-his Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: fis-gtm, orthanc-wsi Suggests: care2x, ewd-920, hkma-cms, ipath, openeyes, openmaxims, openmrs, oscar-mcmaster, patientos, tryton-modules-health, vista-foia, world-vista Section: metapackages Priority: optional Description: Debian Med suggestions for Hospital Information Systems This metapackage contains dependencies for software and that could be useful ro run a Hospital Information System. While there is continuous work going on to package a ready to install system currently only preconditions are finished but hopefully helpful in hospitals anyway. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-his -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 29 2025-05-05 19:32 ./usr/share/blends/tasks/med/his drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-his/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-his/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-his/README.Debian -rw-r--r-- root/root 5424 2025-05-05 19:32 ./usr/share/doc/med-his/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-his/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-his.1.gz -> med-config.1.gz med-imaging-dev_3.9.0_all.deb ----------------------------- new Debian package, version 2.0. size 9544 bytes: control archive=2432 bytes. 1576 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging-dev Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: cimg-dev, ctn-dev, gmic, libbart-dev, libbiosig-dev, libcamitk-dev, libcifti-dev, libedf-dev, libgdf-dev, libgiftiio-dev, libinsighttoolkit5-dev, libismrmrd-dev, libmaxflow-dev, libmdc2-dev, libmialm-dev, libminc-dev, libnifti2-dev, libodil-dev, libopencv-dev, libopenigtlink-dev, libopenslide-dev, libpapyrus3-dev, libsight-dev, libteem-dev, libvigraimpex-dev, libvistaio-dev, libvolpack1-dev, libvtk-dicom-dev, libvtk9-dev, libxdf-dev, octave-bart, octave-dicom, octave-gdf, odin, python3-biosig, python3-bioxtasraw, python3-brian, python3-dcmstack, python3-dipy, python3-gdcm, python3-imageio, python3-mne, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-openslide, python3-pydicom, python3-pyxnat, python3-torchvision Suggests: emokit, libbio-formats-java, libcamp-dev, libctk-dev, libeegdev-dev, libfreeimage-dev, libgdcm2-dev, libics-dev, liblimereg-dev, libmia-2.4-dev, libmni-perllib-perl, libnifti-doc, libopenmeeg-dev, libopenslide-java, libvia-dev, libvmtk-dev, libxdffileio-dev, python-vmtk, python3-mia, python3-vigra, tifffile Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages development This metapackage will install Debian packages which might be useful for developing applications for medical image processing and visualization. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-imaging-dev -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 20 2025-05-05 19:32 ./usr/share/blends/tasks/med/imaging-dev drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-imaging-dev/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-imaging-dev/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-imaging-dev/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-imaging-dev/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-imaging-dev/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-imaging-dev.1.gz -> med-config.1.gz med-imaging_3.9.0_all.deb ------------------------- new Debian package, version 2.0. size 10064 bytes: control archive=2956 bytes. 2433 bytes, 22 lines control 353 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-imaging Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: amide, ants, bart, bart-view, biosig-tools, camitk-imp, ctn, ctsim, dcm2niix, dcmtk, dicom3tools, dicomscope, gdf-tools, gwyddion, heudiconv, imagej, invesalius, ismrmrd-tools, king, libgdcm-tools, medcon, minc-tools, mricron, mrtrix3, nifti-bin, odil, odin, openslide-tools, orthanc, orthanc-wsi, pixelmed-apps, plastimatch, python3-dipy, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-pydicom, python3-pyxid, sightcalibrator, sightviewer, sigviewer, teem-apps, tifffile, vrrender, vtk-dicom-tools, xmedcon Suggests: afni, bart-cuda, bioimagesuite, bioimagexd, blox, brainvisa, caret, cdmedicpacs, cellprofiler, cmtk, connectomeviewer, crea, dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, ginkgocadx, hid, illustrate, imagemagick, imagevis3d, imview, incf-nidash-oneclick-clients, insightapplications, isis, itksnap, jemris, jist, kradview, libdcm4che-java, lipsia, maris, mayam, medisnap, mesa-test-tools, mia-tools, mia-viewit, mialmpick, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net, openelectrophy, openmeeg-tools, opensourcepacs, openwalnut-qt4, orthanc-dicomweb, orthanc-gdcm, orthanc-imagej, orthanc-mysql, orthanc-neuro, orthanc-postgresql, orthanc-webviewer, paraview, piano, pngquant, pymeg, python3-surfer, science-workflow, slicer, sofa-apps, stabilitycalc, stir, tempo, trimage, via-bin, visit, vmtk, voxbo, xnat Section: metapackages Priority: optional Description: Debian Med image processing and visualization packages This metapackage will install Debian packages which might be useful in medical image processing and visualization. . On one hand, it installs several packages supporting various image file formats and image management, like DICOM (Digital Imaging and Communications in Medicine) which is the de-facto standard for medical image management, and NIFTI. On the other hand, it provides a variety of software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-imaging -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2025-05-05 19:32 ./usr/share/blends/tasks/med/imaging drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-imaging/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-imaging/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-imaging/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-imaging/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-imaging/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-imaging.1.gz -> med-config.1.gz med-laboratory_3.9.0_all.deb ---------------------------- new Debian package, version 2.0. size 9176 bytes: control archive=2060 bytes. 521 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-laboratory Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: opencfu, orthanc-wsi Suggests: catissuesuite, openelis, openfreezer Section: metapackages Priority: optional Description: Debian Med suggestions for medical laboratories This metapackage contains dependencies for software and that could be useful ro run a medical laboratory. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-laboratory -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2025-05-05 19:32 ./usr/share/blends/tasks/med/laboratory drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-laboratory/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-laboratory/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-laboratory/README.Debian -rw-r--r-- root/root 5429 2025-05-05 19:32 ./usr/share/doc/med-laboratory/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-laboratory/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-laboratory.1.gz -> med-config.1.gz med-oncology_3.9.0_all.deb -------------------------- new Debian package, version 2.0. size 9140 bytes: control archive=2036 bytes. 479 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-oncology Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: orthanc-wsi, simrisc Suggests: planunc, python3-dicompylercore, uw-prism Section: metapackages Priority: optional Description: Debian Med packages for oncology This metapackage will install tools that are useful for radiation oncology. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-oncology -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2025-05-05 19:32 ./usr/share/blends/tasks/med/oncology drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-oncology/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-oncology/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-oncology/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-oncology/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-oncology/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-oncology.1.gz -> med-config.1.gz med-pharmacy_3.9.0_all.deb -------------------------- new Debian package, version 2.0. size 9164 bytes: control archive=2048 bytes. 529 bytes, 15 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-pharmacy Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: chemtool, r-cran-dosefinding Suggests: r-cran-rpact Section: metapackages Priority: optional Description: Debian Med packages for pharmaceutical research This metapackage contains dependencies for a collection of software and documentation which is useful for pharmaceutical research. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-pharmacy -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 13 2025-05-05 19:32 ./usr/share/blends/tasks/med/pharmacy drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-pharmacy/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-pharmacy/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-pharmacy/README.Debian -rw-r--r-- root/root 5424 2025-05-05 19:32 ./usr/share/doc/med-pharmacy/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-pharmacy/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-pharmacy.1.gz -> med-config.1.gz med-physics_3.9.0_all.deb ------------------------- new Debian package, version 2.0. size 9460 bytes: control archive=2184 bytes. 684 bytes, 16 lines control 487 bytes, 7 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-physics Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 34 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: biosig-tools, gdf-tools, octave, r-base Suggests: gate, libbiosig-dev, octave-biosig, openvibe, paw, paw++, paw-demos, python3-biosig, python3-multipletau Section: metapackages Priority: optional Description: Debian Med packages for medical physicists This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-physics -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/med/menu/ -rw-r--r-- root/root 120 2025-05-05 19:32 ./usr/share/blends/med/menu/octave -rw-r--r-- root/root 104 2025-05-05 19:32 ./usr/share/blends/med/menu/r-base drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 8 2025-05-05 19:32 ./usr/share/blends/tasks/med/physics drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-physics/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-physics/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-physics/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-physics/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-physics/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-physics.1.gz -> med-config.1.gz med-practice_3.9.0_all.deb -------------------------- new Debian package, version 2.0. size 9324 bytes: control archive=2216 bytes. 836 bytes, 14 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-practice Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: entangle, gnumed-client, gnumed-server, libchipcard-tools, orthanc, orthanc-wsi, oscar, qrisk2, r-cran-medadherence Suggests: clearhealth, elementalclinic, elexis, freeb, freediams, freemed, freemedforms-emr, freeshim, ginkgocadx, libctapimkt1, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, remitt, resmedicinae, sqlclinic, thera-pi, tinyheb Section: metapackages Priority: optional Description: Debian Med packages for practice management This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-practice -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2025-05-05 19:32 ./usr/share/blends/tasks/med/practice drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-practice/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-practice/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-practice/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-practice/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-practice/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-practice.1.gz -> med-config.1.gz med-psychology_3.9.0_all.deb ---------------------------- new Debian package, version 2.0. size 9232 bytes: control archive=2124 bytes. 711 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-psychology Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: orthanc-neuro, praat, psignifit, python3-bioxtasraw, r-cran-foreign, r-cran-psy, r-cran-psych, r-cran-psychometric, r-cran-psychotree, r-cran-psyphy Suggests: psychopy, python-pyepl, python3-bids-validator, python3-bmtk, python3-pynwb, science-psychophysics Section: metapackages Priority: optional Description: Debian Med packages for psychology This metapackage contains dependencies for a collection of software which might be helpful for psychological research. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-psychology -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2025-05-05 19:32 ./usr/share/blends/tasks/med/psychology drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-psychology/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-psychology/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-psychology/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-psychology/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-psychology/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-psychology.1.gz -> med-config.1.gz med-research_3.9.0_all.deb -------------------------- new Debian package, version 2.0. size 9116 bytes: control archive=2004 bytes. 436 bytes, 13 lines control 358 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-research Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Suggests: r-cran-rpact, openclinica Section: metapackages Priority: optional Description: Debian Med packages for medical research This metapackage will install tools that are useful for medical research. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-research -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 9 2025-05-05 19:32 ./usr/share/blends/tasks/med/research drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-research/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-research/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-research/README.Debian -rw-r--r-- root/root 5424 2025-05-05 19:32 ./usr/share/doc/med-research/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-research/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-research.1.gz -> med-config.1.gz med-statistics_3.9.0_all.deb ---------------------------- new Debian package, version 2.0. size 9224 bytes: control archive=2108 bytes. 673 bytes, 14 lines control 368 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-statistics Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: r-bioc-edger, r-bioc-limma, r-bioc-multtest, r-bioc-qvalue, r-cran-ade4, r-cran-beeswarm, r-cran-pvclust, r-cran-randomforest, r-cran-rwave, r-cran-snowfall, r-cran-waveslim, r-cran-wavethresh Suggests: rstudio, science-statistics Section: metapackages Priority: optional Description: Debian Med statistics This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-statistics -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 11 2025-05-05 19:32 ./usr/share/blends/tasks/med/statistics drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-statistics/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-statistics/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-statistics/README.Debian -rw-r--r-- root/root 5429 2025-05-05 19:32 ./usr/share/doc/med-statistics/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-statistics/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-statistics.1.gz -> med-config.1.gz med-tasks_3.9.0_all.deb ----------------------- new Debian package, version 2.0. size 8868 bytes: control archive=680 bytes. 400 bytes, 14 lines control 356 bytes, 5 lines md5sums Package: med-tasks Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 25 Depends: tasksel Section: misc Priority: optional Description: Debian Med tasks for tasksel This package provides Debian Med tasks in tasksel. . These tasks are described in detail at https://blends.debian.org/med/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-tasks/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-tasks/README -rw-r--r-- root/root 5425 2025-05-05 19:32 ./usr/share/doc/med-tasks/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-tasks/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 219 2025-05-05 19:32 ./usr/share/lintian/overrides/med-tasks drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/tasksel/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/tasksel/descs/ -rw-r--r-- root/root 6102 2025-05-05 19:32 ./usr/share/tasksel/descs/debian-med-tasks.desc med-tools_3.9.0_all.deb ----------------------- new Debian package, version 2.0. size 9272 bytes: control archive=2172 bytes. 733 bytes, 14 lines control 343 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-tools Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: cronometer, cycle, edfbrowser, galileo, hunspell-de-med, hunspell-en-med, nutsqlite, pcalendar, python3-fitbit, quitcount, r-cran-fitbitscraper, wgerman-medical, workrave Suggests: entangle, goldencheetah, mencal, mssstest, nut-nutrition, oscar, pesco, pondus, r-cran-fitcoach Section: metapackages Priority: optional Description: Debian Med several tools This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-tools -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 6 2025-05-05 19:32 ./usr/share/blends/tasks/med/tools drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-tools/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-tools/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-tools/README.Debian -rw-r--r-- root/root 5423 2025-05-05 19:32 ./usr/share/doc/med-tools/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-tools/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-tools.1.gz -> med-config.1.gz med-typesetting_3.9.0_all.deb ----------------------------- new Debian package, version 2.0. size 9208 bytes: control archive=2092 bytes. 597 bytes, 15 lines control 373 bytes, 5 lines md5sums 2361 bytes, 69 lines * postinst #!/bin/sh 2092 bytes, 74 lines * prerm #!/bin/sh Package: med-typesetting Source: debian-med Version: 3.9.0 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 30 Depends: med-config (= 3.9.0), med-tasks (= 3.9.0) Recommends: king, texlive-latex-extra, texlive-science Suggests: biber, bibus, jabref-plugin-oo, kbibtex, r-cran-qqman Section: metapackages Priority: optional Description: Debian Med support for typesetting and publishing This metapackage will install Debian packages that might be helpful for typesetting and publishing in medical care and structural biology. drwxr-xr-x root/root 0 2025-05-05 19:32 ./ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/bin/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/bin/med-typesetting -> med-config drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/blends/tasks/med/ -rw-r--r-- root/root 12 2025-05-05 19:32 ./usr/share/blends/tasks/med/typesetting drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/doc/med-typesetting/ -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-typesetting/README -rw-r--r-- root/root 939 2024-12-31 21:19 ./usr/share/doc/med-typesetting/README.Debian -rw-r--r-- root/root 5429 2025-05-05 19:32 ./usr/share/doc/med-typesetting/changelog.gz -rw-r--r-- root/root 430 2025-05-05 19:32 ./usr/share/doc/med-typesetting/copyright drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/ drwxr-xr-x root/root 0 2025-05-05 19:32 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2025-05-05 19:32 ./usr/share/man/man1/med-typesetting.1.gz -> med-config.1.gz +------------------------------------------------------------------------------+ | Post Build Mon, 30 Jun 2025 06:57:21 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 30 Jun 2025 06:57:21 +0000 | +------------------------------------------------------------------------------+ Purging /build/debian-med-W6dnJz Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 30 Jun 2025 06:57:21 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 5352 Build-Time: 10 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 8 Job: /srv/debomatic/incoming/debian-med_3.9.0.dsc Machine Architecture: amd64 Package: debian-med Package-Time: 24 Source-Version: 3.9.0 Space: 5352 Status: successful Version: 3.9.0 -------------------------------------------------------------------------------- Finished at 2025-06-30T06:57:18Z Build needed 00:00:24, 5352k disk space