sbuild (Debian sbuild) 0.89.1 (28 April 2025) on carme.larted.org.uk +==============================================================================+ | assemblytics 1.2.1+dfsg-2 (amd64) Mon, 30 Jun 2025 03:55:06 +0000 | +==============================================================================+ Package: assemblytics Version: 1.2.1+dfsg-2 Source Version: 1.2.1+dfsg-2 Distribution: perl-5.40-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... +------------------------------------------------------------------------------+ | Chroot Setup Commands Mon, 30 Jun 2025 03:55:07 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup assemblytics_1.2.1+dfsg-2 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup assemblytics_1.2.1+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: Setting up apt archive... +------------------------------------------------------------------------------+ | Update chroot Mon, 30 Jun 2025 03:55:07 +0000 | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Hit:2 http://deb.debian.org/debian unstable InRelease Ign:3 http://localhost:3142/debian sid InRelease Get:1 file:/srv/reprepro perl-5.40 InRelease [3042 B] Ign:3 http://localhost:3142/debian sid InRelease Ign:3 http://localhost:3142/debian sid InRelease Err:3 http://localhost:3142/debian sid InRelease 503 Server reports unexpected range [IP: 127.0.0.1 3142] Reading package lists... W: Failed to fetch http://localhost:3142/debian/dists/sid/InRelease 503 Server reports unexpected range [IP: 127.0.0.1 3142] W: Some index files failed to download. They have been ignored, or old ones used instead. Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files Mon, 30 Jun 2025 03:55:16 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/assemblytics_1.2.1+dfsg-2.dsc exists in /srv/debomatic/incoming; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Mon, 30 Jun 2025 03:55:16 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential Filtered Build-Depends: debhelper-compat (= 13), build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ InRelease Get:2 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ Release [609 B] Ign:3 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ Release.gpg Get:4 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ Sources [600 B] Get:5 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ Packages [639 B] Fetched 1848 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1t64 libfile-stripnondeterminism-perl libmagic-mgc libmagic1t64 libpipeline1 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.7 MB of archives. After this operation, 40.5 MB of additional disk space will be used. Get:1 copy:/build/assemblytics-T5yC3y/resolver-uDbNRd/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [852 B] Get:2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB] Get:3 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:4 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:5 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:6 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB] Get:7 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:8 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:9 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB] Get:10 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:12 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB] Get:13 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:14 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:15 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:16 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:17 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:18 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get:19 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:20 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:21 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:22 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:23 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:24 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:25 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:26 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB] Get:27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Preconfiguring packages ... Fetched 10.7 MB in 0s (127 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 23092 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_amd64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... 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Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Check architectures Mon, 30 Jun 2025 03:55:21 +0000 | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment Mon, 30 Jun 2025 03:55:21 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 6.12.25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.25-1 (2025-04-25) amd64 (x86_64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.20 g++-13_13.4.0-1 g++-14_14.2.0-19 gcc-13_13.4.0-1 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 linux-libc-dev_6.12.33-1 Package versions: adduser_3.152 apt_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 binutils_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-13_13.4.0-1 cpp-13-x86-64-linux-gnu_13.4.0-1 cpp-14_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-x86-64-linux-gnu_4:14.2.0-1 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dirmngr_2.4.7-21+b1 dpkg_1.22.20 dpkg-dev_1.22.20 dwz_0.15-1+b1 eatmydata_131-2 file_1:5.46-5 findutils_4.10.0-3 g++_4:14.2.0-1 g++-13_13.4.0-1 g++-13-x86-64-linux-gnu_13.4.0-1 g++-14_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-13_13.4.0-1 gcc-13-base_13.4.0-1 gcc-13-x86-64-linux-gnu_13.4.0-1 gcc-14_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 gnupg_2.4.7-21 gnupg-l10n_2.4.7-21 gnupg-utils_2.4.7-21+b1 gpg_2.4.7-21+b1 gpg-agent_2.4.7-21+b1 gpg-wks-client_2.4.7-21+b1 gpgconf_2.4.7-21+b1 gpgsm_2.4.7-21+b1 gpgv_2.4.7-21+b1 grep_3.11-4 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.25 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libassuan0_2.5.6-1+b1 libassuan9_3.0.2-2 libatomic1_14.2.0-19 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-5 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc-l10n_2.41-9 libc6_2.41-9 libc6-dev_2.41-9 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.20 libeatmydata1_131-2+b1 libelf1t64_0.192-4 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libgcc-13-dev_13.4.0-1 libgcc-14-dev_14.2.0-19 libgcc-s1_14.2.0-19 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgpg-error0_1.51-4 libgprofng0_2.44-3 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libksba8_1.6.7-2+b1 liblastlog2-2_2.41-5 libldap-2.5-0_2.5.19+dfsg-1 libldap2_2.6.10+dfsg-1+b1 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnpth0t64_1.8-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.45-1 libperl5.38t64_5.38.2-5 libperl5.40_5.40.1-4 libpipeline1_1.5.8-1 libquadmath0_14.2.0-19 libreadline8t64_8.2-6 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsmartcols1_2.41-5 libsqlite3-0_3.46.1-6 libssl3t64_3.5.0-2 libstdc++-13-dev_13.4.0-1 libstdc++-14-dev_14.2.0-19 libstdc++6_14.2.0-19 libsystemd0_257.7-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunistring5_1.3-2 libuuid1_2.41-5 libxml2_2.12.7+dfsg+really2.9.14-1 libxxhash0_0.8.3-2 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 locales-all_2.41-9 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.5.0-2 passwd_1:4.17.4-2 patch_2.8-2 perl_5.40.1-4 perl-base_5.40.1-4 perl-modules-5.38_5.38.2-5 perl-modules-5.40_5.40.1-4 pinentry-curses_1.3.1-2 po-debconf_1.0.21+nmu1 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 usr-is-merged_39+nmu2 util-linux_2.41-5 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build Mon, 30 Jun 2025 03:55:21 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: assemblytics Binary: assemblytics Architecture: all Version: 1.2.1+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://assemblytics.com/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/assemblytics Vcs-Git: https://salsa.debian.org/med-team/assemblytics.git Testsuite: autopkgtest Testsuite-Triggers: python-is-python3, python3-all Build-Depends: debhelper-compat (= 13) Package-List: assemblytics deb science optional arch=all Checksums-Sha1: 5e65bdd3b755cada366057b0225bedb4b01c620a 15512 assemblytics_1.2.1+dfsg.orig.tar.xz fcb7982136a64dcf40814ddf4749de8bc555e8fa 4640 assemblytics_1.2.1+dfsg-2.debian.tar.xz Checksums-Sha256: 363c6388edd8429b102368f3b83f66e75a5a163865905173cf3b2e995135e0ab 15512 assemblytics_1.2.1+dfsg.orig.tar.xz 67a97d0322248ad7c8996bb468994bc41bc9fb83c63a3cde9abe39740f48fe7f 4640 assemblytics_1.2.1+dfsg-2.debian.tar.xz Files: 08aaf983337a40887c663bb5c63f268b 15512 assemblytics_1.2.1+dfsg.orig.tar.xz 93c83f4390d8af2d717fbde3619a4809 4640 assemblytics_1.2.1+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVwegwOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGDmQ//cZ+wlJTGVzyCywof3MWz2eS8bZfeGikqjCts aqkuQLzhORpO5j2y3LTWmVOvCIGIDSvf6ZFytiqh4Mb+RbrKMgkZoea5I2YLHJJD elvxpwEacxaH3xydBXZA31cqhdKCOhulbbolwcFMpEKAaHp/tIkYg94Cv3lwb+Uk 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applying 2to3.patch dpkg-source: info: applying adapt_script_path.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands Mon, 30 Jun 2025 03:55:21 +0000 | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network assemblytics_1.2.1+dfsg-2 perl-5.40-throwaway amd64 -------------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network assemblytics_1.2.1+dfsg-2 perl-5.40-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LANGUAGE=en_GB:en LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg SCHROOT_ALIAS_NAME=perl-5.40-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.40-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=110 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.40-amd64-debomatic-a81ffd99-a2c5-400d-a2e6-6e43ea84554f SCHROOT_UID=1002 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -Zxz dpkg-buildpackage: info: source package assemblytics dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by ikeadeoyin dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building assemblytics using existing ./assemblytics_1.2.1+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building assemblytics in assemblytics_1.2.1+dfsg-2.debian.tar.xz dpkg-source: info: building assemblytics in assemblytics_1.2.1+dfsg-2.dsc debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/assemblytics/ debian/rules override_dh_install make[1]: Entering directory '/build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg' dh_install mkdir -p debian/assemblytics/usr/bin mv debian/assemblytics/usr/share/assemblytics/bin/Assemblytics debian/assemblytics/usr/bin sed -ri '1s|^#!\s*/usr/bin/env\s+|#!/usr/bin/|' debian/assemblytics/usr/share/assemblytics/bin/* sed -i '1s|^|#!/usr/bin/Rscript\n|' debian/assemblytics/usr/share/assemblytics/bin/*.R make[1]: Leaving directory '/build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg' chmod +x debian/assemblytics/usr/share/assemblytics/bin/* dh_fixperms make[1]: Leaving directory '/build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'assemblytics' in '../assemblytics_1.2.1+dfsg-2_all.deb'. dpkg-genbuildinfo -O../assemblytics_1.2.1+dfsg-2_amd64.buildinfo dpkg-genchanges -O../assemblytics_1.2.1+dfsg-2_amd64.changes dpkg-genchanges: info: not including original source code in upload dpkg-source -Zxz --after-build . dpkg-buildpackage: info: binary and diff upload (original source NOT included) -------------------------------------------------------------------------------- Build finished at 2025-06-30T03:55:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Mon, 30 Jun 2025 03:55:28 +0000 | +------------------------------------------------------------------------------+ assemblytics_1.2.1+dfsg-2_amd64.changes: ---------------------------------------- Format: 1.8 Date: Mon, 16 Oct 2023 18:31:31 -0400 Source: assemblytics Binary: assemblytics Architecture: source all Version: 1.2.1+dfsg-2 Distribution: perl-5.40-throwaway Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: ikeadeoyin Description: assemblytics - detect and analyze structural variants from a genome assembly Closes: 1035116 Changes: assemblytics (1.2.1+dfsg-2) unstable; urgency=medium . * Team upload. * Added autopkgtests Closes: #1035116 Checksums-Sha1: bf83201142765c5ae614f3f44971a860e9e2ef1c 1168 assemblytics_1.2.1+dfsg-2.dsc fcb7982136a64dcf40814ddf4749de8bc555e8fa 4640 assemblytics_1.2.1+dfsg-2.debian.tar.xz 437d98039f66e2b5b45fe9f090ab348b3df382be 18640 assemblytics_1.2.1+dfsg-2_all.deb a78b12fb66ac14f2145df1a562387d9e3f20e373 5054 assemblytics_1.2.1+dfsg-2_amd64.buildinfo Checksums-Sha256: 16f84e6fcf87cd026eb304b6be275b03692a9fd4faeb9658ec546bb08619f2ec 1168 assemblytics_1.2.1+dfsg-2.dsc 67a97d0322248ad7c8996bb468994bc41bc9fb83c63a3cde9abe39740f48fe7f 4640 assemblytics_1.2.1+dfsg-2.debian.tar.xz dbe68cc890b5b8dae437aadd88599b2ce0042defeb8b7211c1b449777954c1f4 18640 assemblytics_1.2.1+dfsg-2_all.deb fea3ee37bb6c12131507edf7465ec49ceab8660f55f46b78eb53a85108b73ba9 5054 assemblytics_1.2.1+dfsg-2_amd64.buildinfo Files: 2248927534cd6a85fbf47ec28f8f1a76 1168 science optional assemblytics_1.2.1+dfsg-2.dsc 93c83f4390d8af2d717fbde3619a4809 4640 science optional assemblytics_1.2.1+dfsg-2.debian.tar.xz e38f9041e01876e562ad9fdfe3f9270d 18640 science optional assemblytics_1.2.1+dfsg-2_all.deb efd791c4c9692c988b96f13f04c49a1a 5054 science optional assemblytics_1.2.1+dfsg-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo Mon, 30 Jun 2025 03:55:28 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: assemblytics Binary: assemblytics Architecture: all source Version: 1.2.1+dfsg-2 Checksums-Md5: 2248927534cd6a85fbf47ec28f8f1a76 1168 assemblytics_1.2.1+dfsg-2.dsc e38f9041e01876e562ad9fdfe3f9270d 18640 assemblytics_1.2.1+dfsg-2_all.deb Checksums-Sha1: bf83201142765c5ae614f3f44971a860e9e2ef1c 1168 assemblytics_1.2.1+dfsg-2.dsc 437d98039f66e2b5b45fe9f090ab348b3df382be 18640 assemblytics_1.2.1+dfsg-2_all.deb Checksums-Sha256: 16f84e6fcf87cd026eb304b6be275b03692a9fd4faeb9658ec546bb08619f2ec 1168 assemblytics_1.2.1+dfsg-2.dsc dbe68cc890b5b8dae437aadd88599b2ce0042defeb8b7211c1b449777954c1f4 18640 assemblytics_1.2.1+dfsg-2_all.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 30 Jun 2025 03:55:28 +0000 Build-Path: /build/assemblytics-T5yC3y/assemblytics-1.2.1+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 13.8), base-passwd (= 3.6.7), bash (= 5.2.37-2+b3), binutils (= 2.44-3), binutils-common (= 2.44-3), binutils-x86-64-linux-gnu (= 2.44-3), bsdextrautils (= 2.41-5), bsdutils (= 1:2.41-5), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.7-3), cpp (= 4:14.2.0-1), cpp-13 (= 13.4.0-1), cpp-13-x86-64-linux-gnu (= 13.4.0-1), cpp-14 (= 14.2.0-19), cpp-14-x86-64-linux-gnu (= 14.2.0-19), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.23.1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-4), dpkg (= 1.22.20), dpkg-dev (= 1.22.20), dwz (= 0.15-1+b1), file (= 1:5.46-5), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-x86-64-linux-gnu (= 14.2.0-19), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-13 (= 13.4.0-1), gcc-13-base (= 13.4.0-1), gcc-13-x86-64-linux-gnu (= 13.4.0-1), gcc-14 (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-14-x86-64-linux-gnu (= 14.2.0-19), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.23.1-2), gettext-base (= 0.23.1-2), grep (= 3.11-4), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-5), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-9), libc-dev-bin (= 2.41-9), libc6 (= 2.41-9), libc6-dev (= 2.41-9), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-9), libcc1-0 (= 14.2.0-19), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.279), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.20), libelf1t64 (= 0.192-4), libfile-stripnondeterminism-perl (= 1.14.1-2), libgcc-13-dev (= 13.4.0-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-3), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libhwasan0 (= 14.2.0-19), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), liblastlog2-2 (= 2.41-5), liblsan0 (= 14.2.0-19), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41-5), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-4), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-19), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe1 (= 2.44-3), libsmartcols1 (= 2.41-5), libsqlite3-0 (= 3.46.1-6), libssl3t64 (= 3.5.0-2), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.7-1), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.7-1), libunistring5 (= 1.3-2), libuuid1 (= 2.41-5), libxml2 (= 2.12.7+dfsg+really2.9.14-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.33-1), m4 (= 1.4.19-8), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.5.0-2), patch (= 2.8-2), perl (= 5.40.1-4), perl-base (= 5.40.1-4), perl-modules-5.40 (= 5.40.1-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.25), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-5), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="parallel=2" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" LD_LIBRARY_PATH="/usr/lib/libeatmydata" SOURCE_DATE_EPOCH="1697495491" +------------------------------------------------------------------------------+ | Package contents Mon, 30 Jun 2025 03:55:28 +0000 | +------------------------------------------------------------------------------+ assemblytics_1.2.1+dfsg-2_all.deb --------------------------------- new Debian package, version 2.0. size 18640 bytes: control archive=1228 bytes. 789 bytes, 16 lines control 1214 bytes, 15 lines md5sums Package: assemblytics Version: 1.2.1+dfsg-2 Architecture: all Maintainer: Debian Med Packaging Team Installed-Size: 84 Depends: perl:any, python3, python3-numpy, r-base-core, r-cran-ggplot2, r-cran-plyr, r-cran-rcolorbrewer Recommends: mummer Section: science Priority: optional Homepage: http://assemblytics.com/ Description: detect and analyze structural variants from a genome assembly Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species. drwxr-xr-x root/root 0 2023-10-16 22:31 ./ drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/ drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/bin/ -rwxr-xr-x root/root 6060 2023-10-16 22:31 ./usr/bin/Assemblytics drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/ drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/assemblytics/ drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/assemblytics/bin/ -rwxr-xr-x root/root 3617 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_Nchart.R -rwxr-xr-x root/root 12756 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_between_alignments.pl -rwxr-xr-x root/root 4361 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_dotplot.R -rwxr-xr-x root/root 6568 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_index.py -rwxr-xr-x root/root 5466 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_summary.py -rwxr-xr-x root/root 12876 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_uniq_anchor.py -rwxr-xr-x root/root 5886 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_variant_charts.R -rwxr-xr-x root/root 4423 2023-10-16 22:31 ./usr/share/assemblytics/bin/Assemblytics_within_alignment.py drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/doc/assemblytics/ -rw-r--r-- root/root 2677 2020-07-23 02:05 ./usr/share/doc/assemblytics/README.md -rw-r--r-- root/root 278 2023-10-16 22:31 ./usr/share/doc/assemblytics/README.test -rw-r--r-- root/root 658 2023-10-16 22:31 ./usr/share/doc/assemblytics/changelog.Debian.gz -rw-r--r-- root/root 1444 2023-10-16 22:31 ./usr/share/doc/assemblytics/copyright drwxr-xr-x root/root 0 2023-10-16 22:31 ./usr/share/doc/assemblytics/examples/ -rw-r--r-- root/root 660 2023-10-16 22:31 ./usr/share/doc/assemblytics/examples/sample.delta -rw-r--r-- root/root 407 2023-10-16 22:31 ./usr/share/doc/assemblytics/run-unit-test +------------------------------------------------------------------------------+ | Post Build Mon, 30 Jun 2025 03:55:29 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Mon, 30 Jun 2025 03:55:29 +0000 | +------------------------------------------------------------------------------+ Purging /build/assemblytics-T5yC3y Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Mon, 30 Jun 2025 03:55:29 +0000 | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 528 Build-Time: 7 Distribution: perl-5.40-throwaway Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/assemblytics_1.2.1+dfsg-2.dsc Machine Architecture: amd64 Package: assemblytics Package-Time: 22 Source-Version: 1.2.1+dfsg-2 Space: 528 Status: successful Version: 1.2.1+dfsg-2 -------------------------------------------------------------------------------- Finished at 2025-06-30T03:55:28Z Build needed 00:00:22, 528k disk space