sbuild (Debian sbuild) 0.79.1 (22 April 2020) on carme.larted.org.uk +==============================================================================+ | soapdenovo2 241+dfsg-3 (amd64) Wed, 30 Sep 2020 21:40:14 +0000 | +==============================================================================+ Package: soapdenovo2 Version: 241+dfsg-3 Source Version: 241+dfsg-3 Distribution: perl-5.32-throwaway Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/perl-5.32-amd64-debomatic-a3fc92a5-577a-4be6-950e-d46ddec6fadd' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup soapdenovo2_241+dfsg-3 perl-5.32-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup soapdenovo2_241+dfsg-3 perl-5.32-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- I: NOTICE: Log filtering will replace 'build/soapdenovo2-mYeTob/resolver-NSwXOJ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 file:/srv/reprepro perl-5.32 InRelease [2871 B] Get:2 http://localhost:3142/debian unstable InRelease [146 kB] Get:3 http://localhost:3142/debian sid InRelease [146 kB] Get:1 file:/srv/reprepro perl-5.32 InRelease [2871 B] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages 2020-09-30-0800.48.pdiff [3760 B] Get:6 http://localhost:3142/debian unstable/main amd64 Packages 2020-09-30-1401.12.pdiff [10.7 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages 2020-09-30-2000.39.pdiff [7321 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages 2020-09-30-2000.39.pdiff [7321 B] Get:8 http://localhost:3142/debian sid/main Sources.diff/Index [27.9 kB] Get:9 http://localhost:3142/debian sid/main Sources 2020-09-30-0800.48.pdiff [4869 B] Get:10 http://localhost:3142/debian sid/main Sources 2020-09-30-1401.12.pdiff [10.6 kB] Get:11 http://localhost:3142/debian sid/main Sources 2020-09-30-2000.39.pdiff [7970 B] Get:11 http://localhost:3142/debian sid/main Sources 2020-09-30-2000.39.pdiff [7970 B] Fetched 394 kB in 1s (270 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/soapdenovo2_241+dfsg-3.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/soapdenovo2-mYeTob/soapdenovo2-241+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/soapdenovo2-mYeTob' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), zlib1g-dev, libbam-dev, libaio-dev, rename, build-essential, fakeroot Filtered Build-Depends: debhelper (>= 11~), zlib1g-dev, libbam-dev, libaio-dev, rename, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [392 B] Get:5 copy:/<>/apt_archive ./ Packages [471 B] Fetched 1820 B in 0s (154 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libaio-dev libaio1 libarchive-zip-perl libbam-dev libcroco3 libdebhelper-perl libelf1 libfakeroot libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sensible-utils zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl libio-stringy-perl libpod-parser-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file gettext gettext-base groff-base intltool-debian libaio-dev libaio1 libarchive-zip-perl libbam-dev libcroco3 libdebhelper-perl libelf1 libfakeroot libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-main-dummy sensible-utils zlib1g-dev 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 73.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [904 B] Get:2 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.36-3+b1 [140 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:10 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:11 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:13 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:14 http://localhost:3142/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:15 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:16 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.2-4 [801 kB] Get:17 http://localhost:3142/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:19 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.2.1 [188 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:24 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libelf1 amd64 0.181-1 [164 kB] Get:26 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libglib2.0-0 amd64 2.66.0-2 [1361 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:31 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:32 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:33 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:34 http://localhost:3142/debian unstable/main amd64 debhelper all 13.2.1 [1007 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.25.1-1 [46.8 kB] Get:36 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.25.1-1 [86.8 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libaio1 amd64 0.3.112-8 [12.5 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libaio-dev amd64 0.3.112-8 [21.4 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libbam-dev amd64 0.1.19-4 [125 kB] Get:40 http://localhost:3142/debian unstable/main amd64 rename all 1.13-1 [18.0 kB] Get:41 http://localhost:3142/debian unstable/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 0s (117 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 15481 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3+b1_amd64.deb ... Unpacking bsdextrautils (2.36-3+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... 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No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10) ... Setting up rename (1.13-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-5) ... Setting up libfakeroot:amd64 (1.25.1-1) ... Setting up fakeroot (1.25.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libbam-dev (0.1.19-4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libaio1:amd64 (0.3.112-8) ... Setting up libelf1:amd64 (0.181-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libaio-dev:amd64 (0.3.112-8) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 any-ppc64 any-ia64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.7.0-2-amd64 #1 SMP Debian 5.7.10-1 (2020-07-26) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-1 dpkg-dev_1.20.5 g++-10_10.2.0-12 g++-9_9.3.0-18 gcc-10_10.2.0-12 gcc-9_9.3.0-18 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-12 libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-12 linux-libc-dev_5.8.10-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35.1-1 binutils-common_2.35.1-1 binutils-x86-64-linux-gnu_2.35.1-1 bsdextrautils_2.36-3+b1 bsdutils_1:2.36-3+b1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.0-12 cpp-9_9.3.0-18 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 eatmydata_105-9 fakeroot_1.25.1-1 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.2.0-1 g++-10_10.2.0-12 g++-9_9.3.0-18 gcc_4:10.2.0-1 gcc-10_10.2.0-12 gcc-10-base_10.2.0-12 gcc-9_9.3.0-18 gcc-9-base_9.3.0-18 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaio-dev_0.3.112-8 libaio1_0.3.112-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan5_9.3.0-18 libasan6_10.2.0-12 libassuan0_2.5.3-7.1 libatomic1_10.2.0-12 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbam-dev_0.1.19-4 libbinutils_2.35.1-1 libblkid1_2.36-3+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-dev_2.31-3 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-12 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-1 libctf0_2.35.1-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.254 libdebhelper-perl_13.2.1 libdpkg-perl_1.20.5 libeatmydata1_105-9 libelf1_0.181-1 libext2fs2_1.45.6-1 libfakeroot_1.25.1-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-12 libgcc-9-dev_9.3.0-18 libgcc-s1_10.2.0-12 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.0-2 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-4 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libstdc++-9-dev_9.3.0-18 libstdc++6_10.2.0-12 libsub-override-perl_0.09-2 libsystemd0_246.6-1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20200918-1 libtool_2.4.6-14 libtsan0_10.2.0-12 libubsan1_10.2.0-12 libuchardet0_0.0.7-1 libudev1_246.6-1 libunistring2_0.9.10-4 libuuid1_2.36-3+b1 libxml2_2.9.10+dfsg-6 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.10-1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3+b1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-3 perl-base_5.32.0-3 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21 readline-common_8.0-4 rename_1.13-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.36-3+b1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: soapdenovo2 Binary: soapdenovo2 Architecture: any-amd64 any-ppc64 any-ia64 Version: 241+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://soap.genomics.org.cn/soapdenovo.html Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/soapdenovo2 Vcs-Git: https://salsa.debian.org/med-team/soapdenovo2.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), zlib1g-dev, libbam-dev, libaio-dev, rename Package-List: soapdenovo2 deb science optional arch=any-amd64,any-ppc64,any-ia64 Checksums-Sha1: 8b470b4478798eea2f8a876dc06452551dabf712 250180 soapdenovo2_241+dfsg.orig.tar.xz d9c96c69a0f02ffe714556dcd7a3cf39f3511e15 487276 soapdenovo2_241+dfsg-3.debian.tar.xz Checksums-Sha256: 0b6d64d95e250cfc11fceb75933f90f468d1b9f595c8d91ff250a0bd4ed12abd 250180 soapdenovo2_241+dfsg.orig.tar.xz b641a7b83028175c470ab1bfc2b6f123cefd94a3aa93eaf72e88423a95b3c3ac 487276 soapdenovo2_241+dfsg-3.debian.tar.xz Files: 2d1eed939b424d2fe4adb81d7cc420ba 250180 soapdenovo2_241+dfsg.orig.tar.xz 9244be82aade6ed2dcf5c8243e6496d1 487276 soapdenovo2_241+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlsg304OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEnyxAAkb8UACmegudrHE2b7JKBKd+gvTSrHbrRl1C6 X+bByh3id04Hv23XcA6Mej4TISQOD87MV/UQlBz5GrfBHB/DTFVIxp6bavTC8KxF hbubnTxG+gs3gdHM9IHjwbSRrnSxL5mwjwu/XuySCTbY9ZUOpzXQFWPNQiTHu8s8 HHxI7yJG/OWQlSWR3PLY3uj7pfF2lqZdjqiEBKatJ9sehDiX+KNEZ2RxPlEKNYC6 5IGITcWp0Ve70cKugWUNLbLQUS2Lsp4fjWKdljSOjTt1NhcDZJ8cPbYiZc8nUE4T 4tInRQCl0q4FAixrfPRsdcAiAGzgTqnNpTLwMfK9NYiC77aKexVXSeJgUwzee4hZ tykJgPD29HBS/CG6NB/oySY3hljumO3K7gT0LPV/2Wduc7o8LcxecvjVW/EBrofU LtX5BLeCjLXTzNll3NgRzafAe/S7VVbSPsnYCO3M4JN4e0izNeYJz9JBfrMgxvF3 IKpTG87Cq1GZwlpTHMr9W98xoO9izd+Sh3+99qYAlepDetiByZ1jSucn0zRbs6PZ 7ODUjcIdR5HSnb0IQt5JVfGrFIE3cYqwCN2eJDEYIPJjVf3XemtkqQzfFhjN7fLS 2jqip/8NbHpfOc+HCedrlE2wj2ho0QAabwnc3O6jNEjA+SRW1SSh5eewpK2YO+Sv 0D7KxEc= =ERcq -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.u862YXFy/trustedkeys.kbx': General error gpgv: Signature made Wed Jun 13 09:09:34 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./soapdenovo2_241+dfsg-3.dsc dpkg-source: info: extracting soapdenovo2 in /<> dpkg-source: info: unpacking soapdenovo2_241+dfsg.orig.tar.xz dpkg-source: info: unpacking soapdenovo2_241+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_libsam dpkg-source: info: applying fix_compilation dpkg-source: info: applying fix_usage_name dpkg-source: info: applying add_hardening dpkg-source: info: applying use_debian_zlib dpkg-source: info: applying reproducible Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network soapdenovo2_241+dfsg-3 perl-5.32-throwaway amd64 ----------------------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network soapdenovo2_241+dfsg-3 perl-5.32-throwaway amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1001/bus HOME=/sbuild-nonexistent LANG=C LC_ALL=C.UTF-8 LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SCHROOT_ALIAS_NAME=perl-5.32-throwaway-amd64-debomatic SCHROOT_CHROOT_NAME=perl-5.32-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=112 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=perl-5.32-amd64-debomatic-a3fc92a5-577a-4be6-950e-d46ddec6fadd SCHROOT_UID=1001 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_CLASS=background XDG_SESSION_ID=c3453486 XDG_SESSION_TYPE=unspecified dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -rfakeroot -Zxz dpkg-buildpackage: info: source package soapdenovo2 dpkg-buildpackage: info: source version 241+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Liubov Chuprikova dpkg-source -Zxz --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel make -j1 clean make[1]: Entering directory '/<>' pregraph_sparse_63mer.v1.0.3 cleaning done. SOAPdenovo-63mer cleaning done. SOAPdenovo-fusion cleaning done. make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--no-parallel debian/rules override_dh_clean make[1]: Entering directory '/<>' cd standardPregraph && make 63mer=1 clean && make 127mer=1 clean make[2]: Entering directory '/<>/standardPregraph' SOAPdenovo-63mer cleaning done. make[2]: Leaving directory '/<>/standardPregraph' make[2]: Entering directory '/<>/standardPregraph' SOAPdenovo-127mer cleaning done. make[2]: Leaving directory '/<>/standardPregraph' cd sparsePregraph && make clean make[2]: Entering directory '/<>/sparsePregraph' pregraph_sparse_63mer.v1.0.3 cleaning done. make[2]: Leaving directory '/<>/sparsePregraph' dh_clean make[1]: Leaving directory '/<>' dpkg-source -Zxz -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building soapdenovo2 using existing ./soapdenovo2_241+dfsg.orig.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: building soapdenovo2 in soapdenovo2_241+dfsg-3.debian.tar.xz dpkg-source: info: building soapdenovo2 in soapdenovo2_241+dfsg-3.dsc debian/rules build dh build --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel dh_auto_build -O--no-parallel make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' Compiling build_graph.cpp... Compiling build_edge.cpp... Compiling multi_threads.cpp... Compiling build_preArc.cpp... Compiling pregraph_sparse.cpp... Compiling io_func.cpp... Compiling global.cpp... Compiling convert_soapdenovo.cpp... pregraph_sparse_63mer.v1.0.3 objects generated. Compiling arc.c... Compiling attachPEinfo.c... Compiling bubble.c... Compiling check.c... Compiling compactEdge.c... Compiling concatenateEdge.c... Compiling connect.c... Compiling contig.c... Compiling cutTipPreGraph.c... Compiling cutTip_graph.c... Compiling darray.c... Compiling dfib.c... Compiling dfibHeap.c... Compiling fib.c... Compiling fibHeap.c... Compiling hashFunction.c... Compiling kmer.c... Compiling lib.c... Compiling loadGraph.c... Compiling loadPath.c... Compiling loadPreGraph.c... Compiling localAsm.c... Compiling main.c... Compiling map.c... Compiling mem_manager.c... Compiling newhash.c... Compiling node2edge.c... Compiling orderContig.c... Compiling output_contig.c... Compiling output_pregraph.c... Compiling output_scaffold.c... Compiling pregraph.c... Compiling prlHashCtg.c... Compiling prlHashReads.c... Compiling prlRead2Ctg.c... Compiling prlRead2path.c... Compiling prlReadFillGap.c... Compiling read2scaf.c... Compiling readInterval.c... Compiling stack.c... Compiling readseq1by1.c... Compiling scaffold.c... Compiling searchPath.c... Compiling seq.c... Compiling splitReps.c... Compiling cutTip_graph2.c... Compiling linearEdge.c... Compiling kmerhash.c... Compiling read2edge.c... Compiling iterate.c... SOAPdenovo-63mer objects generated. /usr/bin/ld: standardPregraph/attachPEinfo.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/bubble.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/check.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/compactEdge.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/concatenateEdge.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/connect.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/contig.o:./contig.c:30: multiple definition of `shortrdsfile'; sparsePregraph/global.o:./global.cpp:25: first defined here /usr/bin/ld: standardPregraph/contig.o:./contig.c:30: multiple definition of `graphfile'; sparsePregraph/global.o:./global.cpp:26: first defined here /usr/bin/ld: standardPregraph/contig.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/cutTipPreGraph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/cutTip_graph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/cutTip_graph2.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/hashFunction.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/iterate.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/kmer.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/kmerhash.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/lib.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/linearEdge.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/loadGraph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/loadPath.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/loadPreGraph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/localAsm.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/main.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/map.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/mem_manager.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/newhash.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/node2edge.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/orderContig.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/output_contig.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/output_pregraph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/output_scaffold.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/pregraph.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/prlHashCtg.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/prlHashReads.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/prlRead2Ctg.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/prlRead2path.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/prlReadFillGap.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/read2edge.o:./read2edge.c:110: multiple definition of `locks'; sparsePregraph/global.o:./global.cpp:61: first defined here /usr/bin/ld: standardPregraph/read2edge.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/read2scaf.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/readInterval.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/readseq1by1.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/scaffold.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/searchPath.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/seq.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here /usr/bin/ld: standardPregraph/splitReps.o:./inc/def.h:44: multiple definition of `b_ban'; standardPregraph/arc.o:./inc/def.h:44: first defined here collect2: error: ld returned 1 exit status make[1]: *** [Makefile:62: SOAPdenovo-63mer] Error 1 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:14: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-09-30T21:40:46Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 10020 Build-Time: 21 Distribution: perl-5.32-throwaway Fail-Stage: build Host Architecture: amd64 Install-Time: 5 Job: /srv/debomatic/incoming/soapdenovo2_241+dfsg-3.dsc Machine Architecture: amd64 Package: soapdenovo2 Package-Time: 32 Source-Version: 241+dfsg-3 Space: 10020 Status: attempted Version: 241+dfsg-3 -------------------------------------------------------------------------------- Finished at 2020-09-30T21:40:46Z Build needed 00:00:32, 10020k disk space