sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on carme.larted.org.uk +==============================================================================+ | libgo-perl 0.15-5 (amd64) Wed, 30 Aug 2017 21:04:07 +0000 | +==============================================================================+ Package: libgo-perl Version: 0.15-5 Source Version: 0.15-5 Distribution: experimental Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/experimental-amd64-debomatic-07d1f3b1-5f89-452b-8afe-ba18995b9932' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libgo-perl_0.15-5 experimental amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup libgo-perl_0.15-5 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [234 kB] Get:2 http://localhost:3142/debian experimental InRelease [107 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [27.9 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:5 http://localhost:3142/debian unstable/main Sources 2017-08-30-1423.36.pdiff [28.0 kB] Get:5 http://localhost:3142/debian unstable/main Sources 2017-08-30-1423.36.pdiff [28.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-30-1423.36.pdiff [31.1 kB] Get:6 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-30-1423.36.pdiff [31.1 kB] Get:7 http://localhost:3142/debian experimental/main amd64 Packages.diff/Index [27.8 kB] Get:8 http://localhost:3142/debian experimental/main amd64 Packages 2017-08-30-1423.36.pdiff [1956 B] Get:8 http://localhost:3142/debian experimental/main amd64 Packages 2017-08-30-1423.36.pdiff [1956 B] Fetched 486 kB in 0s (685 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu e2fslibs e2fsprogs libbinutils libcomerr2 libss2 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5067 kB of archives. After this operation, 2698 kB disk space will be freed. Get:1 http://localhost:3142/debian unstable/main amd64 e2fslibs amd64 1.43.6-1 [213 kB] Get:2 http://localhost:3142/debian unstable/main amd64 e2fsprogs amd64 1.43.6-1 [556 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libcomerr2 amd64 1.43.6-1 [65.3 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libss2 amd64 1.43.6-1 [69.8 kB] Get:5 http://localhost:3142/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.29-8 [1925 kB] Get:6 http://localhost:3142/debian unstable/main amd64 binutils-common amd64 2.29-8 [1662 kB] Get:7 http://localhost:3142/debian unstable/main amd64 binutils amd64 2.29-8 [79.3 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libbinutils amd64 2.29-8 [497 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5067 kB in 0s (107 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13090 files and directories currently installed.) Preparing to unpack .../binutils-x86-64-linux-gnu_2.29-8_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.29-8) over (2.29-7) ... Preparing to unpack .../binutils-common_2.29-8_amd64.deb ... Unpacking binutils-common:amd64 (2.29-8) over (2.29-7) ... Preparing to unpack .../binutils_2.29-8_amd64.deb ... Unpacking binutils (2.29-8) over (2.29-7) ... Preparing to unpack .../libbinutils_2.29-8_amd64.deb ... Unpacking libbinutils:amd64 (2.29-8) over (2.29-7) ... Setting up binutils-common:amd64 (2.29-8) ... Processing triggers for libc-bin (2.24-17) ... Setting up libbinutils:amd64 (2.29-8) ... Setting up binutils (2.29-8) ... Setting up binutils-x86-64-linux-gnu (2.29-8) ... Processing triggers for libc-bin (2.24-17) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/libgo-perl_0.15-5.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/libgo-perl-pwzu2o/libgo-perl-0.15' with '<>' I: NOTICE: Log filtering will replace 'build/libgo-perl-pwzu2o' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sywe3h/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-sywe3h/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sywe3h/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-sywe3h/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sywe3h/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-sywe3h/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: fakeroot libfakeroot The following NEW packages will be installed: fakeroot libfakeroot sbuild-build-depends-core-dummy 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 373 kB of additional disk space will be used. Get:1 copy:/<>/resolver-sywe3h/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [788 B] Get:2 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.22-1 [45.7 kB] Get:3 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.22-1 [85.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (0 B/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... 13091 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.22-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.22-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.22-1_amd64.deb ... Unpacking fakeroot (1.22-1) ... Selecting previously unselected package sbuild-build-depends-core-dummy. Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-17) ... Setting up libfakeroot:amd64 (1.22-1) ... Setting up fakeroot (1.22-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-17) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 10), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename Filtered Build-Depends: debhelper (>= 10), perl, libdata-stag-perl, libxml-libxslt-perl, libxml-writer-perl, libxml-checker-perl, xsltproc, libbio-perl-perl, rename dpkg-deb: building package 'sbuild-build-depends-libgo-perl-dummy' in '/<>/resolver-sywe3h/apt_archive/sbuild-build-depends-libgo-perl-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-libgo-perl-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-sywe3h/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sywe3h/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-sywe3h/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sywe3h/apt_archive ./ Sources [548 B] Get:5 copy:/<>/resolver-sywe3h/apt_archive ./ Packages [626 B] Fetched 2137 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libgo-perl build dependencies (apt-based resolver) ---------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libsigsegv2 libssl1.1 libtimedate-perl libtool liburi-perl libwww-perl libwww-robotrules-perl libxml-checker-perl libxml-dom-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-perl libxml-writer-perl libxml2 libxslt1.1 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename ucf xsltproc Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff bioperl libxml-sax-expatxs-perl libdata-dump-perl libcrypt-ssleay-perl libtool-doc gfortran | fortran95-compiler gcj-jdk libauthen-ntlm-perl m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libmldbm-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libltdl-dev libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbio-perl-perl libbsd0 libcroco3 libdata-stag-perl libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu57 libio-html-perl libio-socket-ssl-perl libio-string-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic-mgc libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libsigsegv2 libssl1.1 libtimedate-perl libtool liburi-perl libwww-perl libwww-robotrules-perl libxml-checker-perl libxml-dom-perl libxml-libxml-perl libxml-libxslt-perl libxml-namespacesupport-perl libxml-parser-perl libxml-perl libxml-regexp-perl libxml-sax-base-perl libxml-sax-perl libxml-writer-perl libxml2 libxslt1.1 m4 man-db netbase openssl perl-openssl-defaults po-debconf rename sbuild-build-depends-libgo-perl-dummy ucf xsltproc 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 8986 kB/29.8 MB of archives. After this operation, 96.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sywe3h/apt_archive ./ sbuild-build-depends-libgo-perl-dummy 0.invalid.0 [844 B] Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 5.4 [19.1 kB] Get:3 http://localhost:3142/debian unstable/main amd64 ucf all 3.0036 [70.2 kB] Get:4 http://localhost:3142/debian unstable/main amd64 debhelper all 10.7.2 [975 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libdata-stag-perl all 0.14-2 [448 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libbio-perl-perl all 1.7.1-2 [4605 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.2.3-1 [87.5 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://localhost:3142/debian unstable/main amd64 liburi-perl all 1.72-1 [88.7 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b2 [104 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.03-2 [210 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get:17 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 6.11-1 [75.9 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.01-1 [17.4 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.00-2 [13.6 kB] Get:21 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:22 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.80-1+b2 [285 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.050-1 [201 kB] Get:24 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.16-1 [24.2 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.01-1 [14.3 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.15-2 [184 kB] Get:27 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get:28 http://localhost:3142/debian unstable/main amd64 libxml-parser-perl amd64 2.44-2+b3 [213 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libxml-perl all 0.08-2 [113 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libxml-regexp-perl all 0.04-1 [8370 B] Get:31 http://localhost:3142/debian unstable/main amd64 libxml-dom-perl all 1.44-2 [179 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libxml-checker-perl all 0.13-6 [44.9 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.11-1 [14.8 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.07-1 [23.1 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 0.99+dfsg-2 [68.3 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0128+dfsg-3 [340 kB] Get:37 http://localhost:3142/debian unstable/main amd64 libxslt1.1 amd64 1.1.29-2.1 [233 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libxml-libxslt-perl amd64 1.95-1+b2 [46.9 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:40 http://localhost:3142/debian unstable/main amd64 rename all 0.20-4 [12.5 kB] Get:41 http://localhost:3142/debian unstable/main amd64 xsltproc amd64 1.1.29-2.1 [120 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8986 kB in 0s (73.0 MB/s) Selecting previously unselected package groff-base. (Reading database ... 13140 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_amd64.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.6-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1_amd64.deb ... Unpacking bsdmainutils (9.0.12+nmu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.4.2-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_amd64.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../05-libssl1.1_1.1.0f-5_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.0f-5) ... Selecting previously unselected package netbase. Preparing to unpack .../06-netbase_5.4_all.deb ... Unpacking netbase (5.4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.31-1_amd64.deb ... Unpacking libmagic-mgc (1:5.31-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.31-1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.31-1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.31-1_amd64.deb ... Unpacking file (1:5.31-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-4_amd64.deb ... Unpacking gettext-base (0.19.8.1-4) ... Selecting previously unselected package libicu57:amd64. Preparing to unpack .../11-libicu57_57.1-6_amd64.deb ... Unpacking libicu57:amd64 (57.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../12-libxml2_2.9.4+dfsg1-3.1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-3.1) ... Selecting previously unselected package ucf. Preparing to unpack .../13-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../14-libsigsegv2_2.11-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.11-1) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-1_amd64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.15.1-2.1_all.deb ... Unpacking automake (1:1.15.1-2.1) ... Selecting previously unselected package autopoint. 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Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../66-libxslt1.1_1.1.29-2.1_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.29-2.1) ... Selecting previously unselected package libxml-libxslt-perl. Preparing to unpack .../67-libxml-libxslt-perl_1.95-1+b2_amd64.deb ... Unpacking libxml-libxslt-perl (1.95-1+b2) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../68-libxml-writer-perl_0.625-1_all.deb ... Unpacking libxml-writer-perl (0.625-1) ... Selecting previously unselected package rename. Preparing to unpack .../69-rename_0.20-4_all.deb ... Unpacking rename (0.20-4) ... Selecting previously unselected package xsltproc. Preparing to unpack .../70-xsltproc_1.1.29-2.1_amd64.deb ... Unpacking xsltproc (1.1.29-2.1) ... Selecting previously unselected package sbuild-build-depends-libgo-perl-dummy. Preparing to unpack .../71-sbuild-build-depends-libgo-perl-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-libgo-perl-dummy (0.invalid.0) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libexpat1:amd64 (2.2.3-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up rename (0.20-4) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.53.6-1) ... No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up gettext-base (0.19.8.1-4) ... Setting up libpipeline1:amd64 (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:amd64 (57.1-6) ... Setting up libbsd0:amd64 (0.8.6-1) ... Setting up ucf (3.0036) ... Setting up libxml-writer-perl (0.625-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-3.1) ... Setting up libmagic-mgc (1:5.31-1) ... Setting up libmagic1:amd64 (1:5.31-1) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libxslt1.1:amd64 (1.1.29-2.1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.24-17) ... Setting up libxml-regexp-perl (0.04-1) ... Setting up autotools-dev (20161112.1) ... Setting up liburi-perl (1.72-1) ... Setting up libssl1.1:amd64 (1.1.0f-5) ... Setting up libhtml-parser-perl (3.72-3+b2) ... Setting up openssl (1.1.0f-5) ... Setting up libio-string-perl (1.08-3) ... Setting up libnet-http-perl (6.16-1) ... Setting up bsdmainutils (9.0.12+nmu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 148 added, 0 removed; done. Setting up libwww-robotrules-perl (6.01-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up autopoint (0.19.8.1-4) ... Setting up netbase (5.4) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libxml-sax-perl (0.99+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-date-perl (6.02-1) ... Setting up libbio-perl-perl (1.7.1-2) ... Setting up gettext (0.19.8.1-4) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up xsltproc (1.1.29-2.1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.31-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-2.1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.11-1) ... Setting up libxml-libxml-perl (2.0128+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libnet-ssleay-perl (1.80-1+b2) ... Setting up libio-socket-ssl-perl (2.050-1) ... Setting up libxml-libxslt-perl (1.95-1+b2) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up libwww-perl (6.15-2) ... Setting up debhelper (10.7.2) ... Setting up dh-autoreconf (14) ... Setting up libxml-parser-perl (2.44-2+b3) ... Setting up libxml-perl (0.08-2) ... Setting up libxml-dom-perl (1.44-2) ... Setting up libxml-checker-perl (0.13-6) ... Setting up sbuild-build-depends-libgo-perl-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-17) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.12.0-1-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-8 dpkg-dev_1.18.24 g++-5_5.4.1-12 g++-7_7.2.0-1 gcc-5_5.4.1-12 gcc-7_7.2.0-1 libc6-dev_2.24-17 libstdc++-5-dev_5.4.1-12 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 linux-libc-dev_4.12.6-1 Package versions: adduser_3.116 apt_1.5~rc1 autoconf_2.69-11 automake_1:1.15.1-2.1 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-8 binutils-common_2.29-8 binutils-x86-64-linux-gnu_2.29-8 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-4 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-5_5.4.1-12 cpp-7_7.2.0-1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dirmngr_2.1.23-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-4 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-5_5.4.1-12 g++-7_7.2.0-1 gcc_4:7.1.0-2 gcc-4.9-base_4.9.3-14 gcc-5_5.4.1-12 gcc-5-base_5.4.1-12 gcc-6-base_6.4.0-4 gcc-7_7.2.0-1 gcc-7-base_7.2.0-1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.1.23-2 gnupg-l10n_2.1.23-2 gnupg-utils_2.1.23-2 gpg_2.1.23-2 gpg-agent_2.1.23-2 gpg-wks-client_2.1.23-2 gpg-wks-server_2.1.23-2 gpgconf_2.1.23-2 gpgsm_2.1.23-2 gpgv_2.1.23-2 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 initscripts_2.88dsf-59.9 insserv_1.14.0-5.4+b1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~rc1 libarchive-zip-perl_1.59-1 libasan2_5.4.1-12 libasan4_7.2.0-1 libassuan0_2.4.3-3 libatomic1_7.2.0-1 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libbinutils_2.29-8 libbio-perl-perl_1.7.1-2 libblkid1_2.29.2-4 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-17 libc-dev-bin_2.24-17 libc6_2.24-17 libc6-dev_2.24-17 libcap-ng0_0.7.7-3+b1 libcc1-0_7.2.0-1 libcilkrts5_7.2.0-1 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libdata-stag-perl_0.14-2 libdb5.3_5.3.28-13.1 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libencode-locale-perl_1.05-1 libexpat1_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-4 libffi6_3.2.1-6 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.038-1 libgcc-5-dev_5.4.1-12 libgcc-7-dev_7.2.0-1 libgcc1_1:7.2.0-1 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.53.6-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-1 libgpg-error0_1.27-3 libhogweed4_3.3-1+b1 libhtml-parser-perl_3.72-3+b2 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.11-1 libhttp-negotiate-perl_6.00-2 libicu57_57.1-6 libidn2-0_2.0.2-3 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.050-1 libio-string-perl_1.08-3 libisl15_0.18-1 libitm1_7.2.0-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblsan0_7.2.0-1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-4 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx0_5.4.1-12 libmpx2_7.2.0-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnet-http-perl_6.16-1 libnet-ssleay-perl_1.80-1+b2 libnettle6_3.3-1+b1 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.26_5.26.0-6 libpipeline1_1.4.2-1 libquadmath0_7.2.0-1 libreadline6_6.3-9 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-4 libsqlite3-0_3.19.3-3 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-5-dev_5.4.1-12 libstdc++-7-dev_7.2.0-1 libstdc++6_7.2.0-1 libsystemd0_234-2.3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.2.0-1 libubsan0_7.2.0-1 libudev1_234-2.3 libunistring2_0.9.7-2 liburi-perl_1.72-1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-4 libwww-perl_6.15-2 libwww-robotrules-perl_6.01-1 libxml-checker-perl_0.13-6 libxml-dom-perl_1.44-2 libxml-libxml-perl_2.0128+dfsg-3 libxml-libxslt-perl_1.95-1+b2 libxml-namespacesupport-perl_1.11-1 libxml-parser-perl_2.44-2+b3 libxml-perl_0.08-2 libxml-regexp-perl_0.04-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2 libxml-writer-perl_0.625-1 libxml2_2.9.4+dfsg1-3.1 libxslt1.1_1.1.29-2.1 linux-libc-dev_4.12.6-1 login_1:4.4-4.1 lsb-base_9.20170808 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-4 multiarch-support_2.24-17 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 netbase_5.4 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-6 perl-base_5.26.0-6 perl-modules-5.26_5.26.0-6 perl-openssl-defaults_3 pinentry-curses_1.0.0-2 po-debconf_1.0.20 readline-common_7.0-3 rename_0.20-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-libgo-perl-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 startpar_0.59-3.1 sysv-rc_2.88dsf-59.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 ucf_3.0036 util-linux_2.29.2-4 xsltproc_1.1.29-2.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 17 20:55:16 2016 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgo-perl_0.15-5.dsc dpkg-source: info: extracting libgo-perl in /<> dpkg-source: info: unpacking libgo-perl_0.15.orig.tar.gz dpkg-source: info: unpacking libgo-perl_0.15-5.debian.tar.xz dpkg-source: info: applying fix-whatis-entries.patch dpkg-source: info: applying fix-missing-manpages dpkg-source: info: applying fix-pod.patch dpkg-source: info: applying fix_test_xsltproc dpkg-source: info: applying fix_hash_in_go_io_dotty.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying spelling2.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libgo-perl_0.15-5 experimental amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network libgo-perl_0.15-5 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C LC_ALL=POSIX LC_CTYPE=C.UTF-8 LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=experimental-amd64-debomatic SCHROOT_CHROOT_NAME=experimental-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=112 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=experimental-amd64-debomatic-07d1f3b1-5f89-452b-8afe-ba18995b9932 SCHROOT_UID=1001 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_ID=c254055 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libgo-perl dpkg-buildpackage: info: source version 0.15-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build libgo-perl-0.15 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean dh_autoreconf_clean dh_clean dpkg-source -Zxz -b libgo-perl-0.15 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building libgo-perl using existing ./libgo-perl_0.15.orig.tar.gz dpkg-source: info: building libgo-perl in libgo-perl_0.15-5.debian.tar.xz dpkg-source: info: building libgo-perl in libgo-perl_0.15-5.dsc debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for GO Writing MYMETA.yml and MYMETA.json dh_auto_build make -j4 make[1]: Entering directory '/<>' cp scripts/go-dag-summary.pl blib/script/go-dag-summary.pl cp scripts/go-export-graph.pl blib/script/go-export-graph.pl cp scripts/go-apply-xslt blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-dag-summary.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-apply-xslt "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-graph.pl cp GO/Metadata/Panther.pm blib/lib/GO/Metadata/Panther.pm cp GO/Model/CrossProduct.pm blib/lib/GO/Model/CrossProduct.pm cp GO/Handlers/pathlist.pm blib/lib/GO/Handlers/pathlist.pm cp GO/Handlers/owl_to_obo_text.pm blib/lib/GO/Handlers/owl_to_obo_text.pm cp GO/Handlers/obo_text.pm blib/lib/GO/Handlers/obo_text.pm cp GO/Handlers/rdf.pm blib/lib/GO/Handlers/rdf.pm cp GO/Handlers/go_xref.pm blib/lib/GO/Handlers/go_xref.pm cp GO/IO/XML.pm blib/lib/GO/IO/XML.pm cp GO/IO/ObanOwl.pm blib/lib/GO/IO/ObanOwl.pm cp GO/Handlers/obj_yaml.pm blib/lib/GO/Handlers/obj_yaml.pm cp GO/Handlers/obo.pm blib/lib/GO/Handlers/obo.pm cp GO/Model/Association.pm blib/lib/GO/Model/Association.pm cp GO/Handlers/summary.pm blib/lib/GO/Handlers/summary.pm cp GO/Handlers/abstract_sql_writer.pm blib/lib/GO/Handlers/abstract_sql_writer.pm cp GO/Handlers/godb_prestore.pm blib/lib/GO/Handlers/godb_prestore.pm cp GO/IO/Blast.pm blib/lib/GO/IO/Blast.pm cp GO/Handlers/obj_storable.pm blib/lib/GO/Handlers/obj_storable.pm cp GO/Handlers/xsl_base.pm blib/lib/GO/Handlers/xsl_base.pm cp GO/Handlers/obo_html.pm blib/lib/GO/Handlers/obo_html.pm cp GO/IO/go_assoc.pm blib/lib/GO/IO/go_assoc.pm cp GO/Handlers/abstract_prolog_writer.pm blib/lib/GO/Handlers/abstract_prolog_writer.pm cp GO/Handlers/obo_sxpr.pm blib/lib/GO/Handlers/obo_sxpr.pm cp GO/Handlers/sxpr.pm blib/lib/GO/Handlers/sxpr.pm cp GO/Handlers/go_def.pm blib/lib/GO/Handlers/go_def.pm cp GO/IO/Analysis.pm blib/lib/GO/IO/Analysis.pm cp GO/Handlers/go_ont.pm blib/lib/GO/Handlers/go_ont.pm cp GO/Handlers/obj.pm blib/lib/GO/Handlers/obj.pm cp GO/Handlers/lexanalysis2sql.pm blib/lib/GO/Handlers/lexanalysis2sql.pm cp GO/IO/Dotty.pm blib/lib/GO/IO/Dotty.pm cp GO/Handlers/obo_godb_flat.pm blib/lib/GO/Handlers/obo_godb_flat.pm cp GO/Handlers/prolog.pm blib/lib/GO/Handlers/prolog.pm cp GO/Basic.pm blib/lib/GO/Basic.pm cp GO/Handlers/owl.pm blib/lib/GO/Handlers/owl.pm cp GO/Handlers/base.pm blib/lib/GO/Handlers/base.pm cp GO/IO/RDFXML.pm blib/lib/GO/IO/RDFXML.pm cp GO/Handlers/xml.pm blib/lib/GO/Handlers/xml.pm cp GO/Model/DB.pm blib/lib/GO/Model/DB.pm cp GO/Handlers/text_html.pm blib/lib/GO/Handlers/text_html.pm cp GO/IO/OBDXML.pm blib/lib/GO/IO/OBDXML.pm cp GO/Handlers/lexanalysis.pm blib/lib/GO/Handlers/lexanalysis.pm cp GO/Handlers/obo_xml.pm blib/lib/GO/Handlers/obo_xml.pm cp GO/Handlers/tbl.pm blib/lib/GO/Handlers/tbl.pm cp GO/Model/LogicalDefinition.pm blib/lib/GO/Model/LogicalDefinition.pm cp GO/Parsers/obj_storable_parser.pm blib/lib/GO/Parsers/obj_storable_parser.pm cp GO/Parsers/ParserEventNames.pm blib/lib/GO/Parsers/ParserEventNames.pm cp GO/Model/Xref.pm blib/lib/GO/Model/Xref.pm cp GO/Parsers/go_ont_parser.pm blib/lib/GO/Parsers/go_ont_parser.pm cp GO/Parsers/obo_text_parser.pm blib/lib/GO/Parsers/obo_text_parser.pm cp GO/Parsers/obj_yaml_parser.pm blib/lib/GO/Parsers/obj_yaml_parser.pm cp GO/Model/Root.pm blib/lib/GO/Model/Root.pm cp GO/Model/GeneProduct.pm blib/lib/GO/Model/GeneProduct.pm cp GO/Model/Species.pm blib/lib/GO/Model/Species.pm cp GO/Parsers/go_def_parser.pm blib/lib/GO/Parsers/go_def_parser.pm cp GO/Parsers/obo_parser.pm blib/lib/GO/Parsers/obo_parser.pm cp GO/Model/Property.pm blib/lib/GO/Model/Property.pm cp GO/Model/Relationship.pm blib/lib/GO/Model/Relationship.pm cp GO/Model/Ontology.pm blib/lib/GO/Model/Ontology.pm cp GO/Parsers/mesh_parser.pm blib/lib/GO/Parsers/mesh_parser.pm cp GO/ObjCache.pm blib/lib/GO/ObjCache.pm cp GO/Model/Term.pm blib/lib/GO/Model/Term.pm cp GO/Parsers/generic_tagval_parser.pm blib/lib/GO/Parsers/generic_tagval_parser.pm cp GO/Parsers/mgi_assoc_parser.pm blib/lib/GO/Parsers/mgi_assoc_parser.pm cp GO/Model/TreeIterator.pm blib/lib/GO/Model/TreeIterator.pm cp GO/Model/GraphNodeInstance.pm blib/lib/GO/Model/GraphNodeInstance.pm cp GO/Parsers/locuslink_parser.pm blib/lib/GO/Parsers/locuslink_parser.pm cp GO/Model/Graph.pm blib/lib/GO/Model/Graph.pm cp GO/Model/Seq.pm blib/lib/GO/Model/Seq.pm cp GO/Model/Restriction.pm blib/lib/GO/Model/Restriction.pm cp GO/Model/Path.pm blib/lib/GO/Model/Path.pm cp GO/Model/GraphIterator.pm blib/lib/GO/Model/GraphIterator.pm cp GO/Parser.pm blib/lib/GO/Parser.pm cp GO/Parsers/ncbi_taxonomy_parser.pm blib/lib/GO/Parsers/ncbi_taxonomy_parser.pm cp GO/Model/Modification.pm blib/lib/GO/Model/Modification.pm cp GO/Parsers/go_xref_parser.pm blib/lib/GO/Parsers/go_xref_parser.pm cp GO/ObjFactory.pm blib/lib/GO/ObjFactory.pm cp GO/Model/Evidence.pm blib/lib/GO/Model/Evidence.pm cp GO/Parsers/go_ids_parser.pm blib/lib/GO/Parsers/go_ids_parser.pm cp GO/Parsers/base_parser.pm blib/lib/GO/Parsers/base_parser.pm cp GO/Parsers/obj_emitter.pm blib/lib/GO/Parsers/obj_emitter.pm cp GO/Parsers/ncbi_taxon_names_parser.pm blib/lib/GO/Parsers/ncbi_taxon_names_parser.pm cp GO/Parsers/go_assoc_parser.pm blib/lib/GO/Parsers/go_assoc_parser.pm cp GO/xsl/oboxml_to_dig.xsl blib/lib/GO/xsl/oboxml_to_dig.xsl cp GO/xsl/ipr_to_oboxml.xsl blib/lib/GO/xsl/ipr_to_oboxml.xsl cp GO/Parsers/unknown_format_parser.pm blib/lib/GO/Parsers/unknown_format_parser.pm cp GO/xsl/oboxml_filter.xsl blib/lib/GO/xsl/oboxml_filter.xsl cp GO/xsl/oboxml_to_summary_table.xsl blib/lib/GO/xsl/oboxml_to_summary_table.xsl cp GO/Parsers/refgenomes_parser.pm blib/lib/GO/Parsers/refgenomes_parser.pm cp GO/Utils.pm blib/lib/GO/Utils.pm cp GO/xsl/oboxml_to_simple_owl.xsl blib/lib/GO/xsl/oboxml_to_simple_owl.xsl cp GO/Parsers/owl_parser.pm blib/lib/GO/Parsers/owl_parser.pm cp GO/xsl/oboxml_to_racer.xsl blib/lib/GO/xsl/oboxml_to_racer.xsl cp go-perl.pod blib/lib/go-perl.pod cp GO/xsl/owl_to_oboxml.xsl blib/lib/GO/xsl/owl_to_oboxml.xsl cp GO/xsl/oboxml_to_godb_prestore.xsl blib/lib/GO/xsl/oboxml_to_godb_prestore.xsl cp GO/xsl/text_html.xsl blib/lib/GO/xsl/text_html.xsl cp GO/Parsers/references_parser.pm blib/lib/GO/Parsers/references_parser.pm cp GO/xsl/oboxml_to_chadoxml.xsl blib/lib/GO/xsl/oboxml_to_chadoxml.xsl cp GO/xsl/oboxml_to_obotext.xsl blib/lib/GO/xsl/oboxml_to_obotext.xsl cp GO/xsl/oboxml_to_obd_prestore.xsl blib/lib/GO/xsl/oboxml_to_obd_prestore.xsl cp GO/Parsers/obo_xml_parser.pm blib/lib/GO/Parsers/obo_xml_parser.pm cp GO/xsl/oboxml_to_owl.xsl blib/lib/GO/xsl/oboxml_to_owl.xsl cp GO/Parsers/xrf_abbs_parser.pm blib/lib/GO/Parsers/xrf_abbs_parser.pm cp GO/xsl/chadoxml_to_oboxml.xsl blib/lib/GO/xsl/chadoxml_to_oboxml.xsl cp scripts/go-filter-subset.pl blib/script/go-filter-subset.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-filter-subset.pl cp scripts/go-show-assocs-by-node.pl blib/script/go-show-assocs-by-node.pl cp scripts/go-export-prolog.pl blib/script/go-export-prolog.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-assocs-by-node.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-export-prolog.pl cp scripts/go-show-paths-to-root.pl blib/script/go-show-paths-to-root.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go-show-paths-to-root.pl cp scripts/go2chadoxml blib/script/go2chadoxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2chadoxml cp scripts/go2error_report blib/script/go2error_report "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2error_report cp scripts/go2fmt.pl blib/script/go2fmt.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2fmt.pl cp scripts/go2godb_prestore blib/script/go2godb_prestore "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2godb_prestore cp scripts/go2obo blib/script/go2obo "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo cp scripts/go2obo_html blib/script/go2obo_html cp scripts/go2obo_text blib/script/go2obo_text "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_text cp scripts/go2obo_xml blib/script/go2obo_xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2obo_xml cp scripts/go2owl blib/script/go2owl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2owl cp scripts/go2pathlist blib/script/go2pathlist cp scripts/go2prolog blib/script/go2prolog "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2pathlist "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2prolog cp scripts/go2rdf blib/script/go2rdf "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdf cp scripts/go2rdfxml blib/script/go2rdfxml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2rdfxml cp scripts/go2summary blib/script/go2summary "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2summary cp scripts/go2sxpr blib/script/go2sxpr "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2sxpr cp scripts/go2tbl blib/script/go2tbl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2tbl cp scripts/go2text_html blib/script/go2text_html "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2text_html cp scripts/go2xml blib/script/go2xml "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/go2xml cp scripts/map2slim blib/script/map2slim "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/map2slim Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents make[1]: Leaving directory '/<>' dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/t010build.t ............ 1..6 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:23 2017 # Current time GMT: Wed Aug 30 21:04:23 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t020paths.t ............ 1..7 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/t030detecterror.t ...... 1..4 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 3 '(error (message "\"synonym:krebs cycle\" doesn't look valid") (file "./t/data/test_bad_function.dat") (line " %high-potential iron-sulfur carrier ; synonym:krebs cycle" ) (line_no "6") (parse_class "GO::Parsers::go_ont_parser")) '(error (message "clash on GO:0015000; was 'obsolete' now 'not-polyferredoxin'" ) (file "./t/data/test_bad_function.dat") (line "%not-polyferredoxin ; GO:0015000") (line_no "8") (parse_class "GO::Parsers::go_ont_parser")) ok 4 ok t/t050oboformat.t ........ 1..6 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 ROOT: cellular_component ROOT: biological_process ROOT: molecular_function ok 3 ok 4 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0003691|GO:0003720|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003721|GO:0003720|is_a EDGE|GO:0003721|GO:0003964|is_a EDGE|GO:0008159|GO:0003711|is_a EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0003686|GO:0003685|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0003711|GO:0003700|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003710|GO:0003700|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0003908|GO:0008172|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0003709|GO:0003700|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0000133|GO:0005938|part_of EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0005623|GO:0005575|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003700|GO:0003677|is_a EDGE|GO:0003695|GO:0003677|is_a EDGE|GO:0000182|GO:0003677|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0003694|GO:0003677|is_a EDGE|GO:0003685|GO:0003677|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0008301|GO:0003677|is_a EDGE|GO:0003684|GO:0003677|is_a EDGE|GO:0003692|GO:0003677|is_a EDGE|GO:0003696|GO:0003677|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003720|GO:0003677|is_a EDGE|GO:0003680|GO:0003677|is_a EDGE|GO:0003677|GO:0003676|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0003907|GO:0003686|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003904|GO:0003913|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005933|GO:0005623|part_of EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0003691|GO:0003690|is_a EDGE|GO:0003690|GO:0003677|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003708|GO:0004879|is_a EDGE|GO:0003688|GO:0003687|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0003687|GO:0003677|is_a EDGE|GO:0000133|GO:0005935|part_of EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0005935|GO:0005933|part_of EDGE|GO:0005935|GO:0000134|is_a EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0000299|GO:0005624|is_a EDGE|GO:0003701|GO:0003700|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003697|GO:0003677|is_a EDGE|GO:0003681|GO:0003677|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0008461|GO:0003824|is_a EDGE|GO:0003834|GO:0003824|is_a EDGE|GO:0003833|GO:0003824|is_a EDGE|GO:0003908|GO:0003824|is_a EDGE|GO:0008336|GO:0003824|is_a EDGE|GO:0008416|GO:0003824|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0008111|GO:0003824|is_a EDGE|GO:0008456|GO:0003824|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0008488|GO:0003824|is_a EDGE|GO:0003906|GO:0003824|is_a EDGE|GO:0003837|GO:0003824|is_a EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003905|GO:0003824|is_a EDGE|GO:0003686|GO:0003824|is_a EDGE|GO:0003904|GO:0003824|is_a EDGE|GO:0003839|GO:0003824|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0000133|GO:0005934|part_of EDGE|GO:0005934|GO:0005933|part_of EDGE|GO:0005934|GO:0000134|is_a EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003708|GO:0003706|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003832|GO:0003824|is_a EDGE|GO:0048149|GO:0045471|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0003683|GO:0003682|is_a EDGE|GO:0003682|GO:0003677|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003693|GO:0003677|is_a EDGE|GO:0003826|GO:0003824|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0008534|GO:0008578|is_a EDGE|GO:0003907|GO:0008578|is_a EDGE|GO:0008578|GO:0003824|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0000142|GO:0030480|is_a EDGE|GO:0000142|GO:0005935|part_of EDGE|GO:0003840|GO:0003824|is_a EDGE|GO:0003689|GO:0003687|is_a EDGE|GO:0000150|GO:0003690|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0004844|GO:0008578|is_a EDGE|GO:0004844|GO:0003686|is_a EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0003676|GO:0003674|is_a EDGE|GO:0003824|GO:0003674|is_a EDGE|GO:0003678|GO:0004386|is_a EDGE|GO:0003678|GO:0003677|is_a EDGE|GO:0003825|GO:0003824|is_a EDGE|GO:0008464|GO:0003824|is_a EDGE|GO:0000144|GO:0030481|is_a EDGE|GO:0000144|GO:0000142|part_of EDGE|GO:0008148|GO:0003711|is_a EDGE|GO:0003716|GO:0003715|is_a EDGE|GO:0003717|GO:0003715|is_a EDGE|GO:0003718|GO:0003715|is_a EDGE|GO:0003715|GO:0003700|is_a EDGE|GO:0008263|GO:0003686|is_a EDGE|GO:0008263|GO:0008578|is_a EDGE|GO:0043025|GO:0005623|part_of EDGE|GO:0003707|GO:0003706|is_a EDGE|GO:0003707|GO:0004879|is_a EDGE|GO:0000217|GO:0003677|is_a EDGE|GO:0005624|GO:0000267|is_a EDGE|GO:0005626|GO:0000267|is_a EDGE|GO:0000267|GO:0005623|part_of EDGE|GO:0003703|GO:0003702|is_a EDGE|GO:0003704|GO:0003702|is_a EDGE|GO:0003705|GO:0003702|is_a EDGE|GO:0003706|GO:0003702|is_a EDGE|GO:0003702|GO:0003700|is_a EDGE|GO:0000182|GO:0003677|is_a total parent rels:118 total (both ways):218 ok 5 ok 6 ok t/t060oboformat2.t ....... 1..36 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 Parsing: ./t/data/go-truncated.obo ok 2 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: root ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase TERMS: 29 DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048150|GO:0045472|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0001662|GO:0042596|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a SYNS:FAKE:0001|class I PI3K|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ./t/data/go-truncated.obo from:obo_text to:obo_xml ok 13 Parsing: ./t/data/go-truncated.obo.obo_xml ok 14 ROOT: root ROOT: Part of ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: 1-phosphatidylinositol-4-phosphate kinase TERMS: 29 SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0008344|GO:0007626|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0042630|GO:0009414|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0008343|GO:0007631|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0048266|GO:0048265|is_a SYNS:class I PI3K|FAKE:0001|fake synonym EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007636|GO:0007635|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ./t/data/go-truncated.obo.obo_xml from:obo_xml to:obo_text ok 25 Parsing: ./t/data/go-truncated.obo.obo_xml.obo_text ok 26 ROOT: 1-phosphatidylinositol-4-phosphate kinase ROOT: spermidine catabolism to deoxyhypusine, using deoxyhypusine synthase ROOT: Part of ROOT: root TERMS: 29 DEFXREFS:GO:curators EDGE|GO:0042595|GO:0042594|is_a EDGE|GO:0042595|GO:0007631|is_a DEFXREFS:ISBN:0198506732|FB:bf EDGE|GO:0035095|GO:0035094|is_a EDGE|GO:0035095|GO:0030534|is_a DEFXREFS:GO:jic EDGE|GO:0048150|GO:0045472|is_a EDGE|GO:0048150|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0007610|GO:0008150|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0048149|GO:0045471|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007629|GO:0008344|is_a DEFXREFS:GO:jic|FBrf:0044924|URL:http://fbserver.gen.cam.ac.uk EDGE|GO:0007637|GO:0007635|is_a SYNS:fake synonym|class I PI3K|FAKE:0001 EXACT SYNS:fake synonym COMMENT:To update annotations, consider the molecular function term '1-phosphatidylinositol-4-phosphate 5-kinase activity ; GO:0016308'. DEFXREFS:GO:curators|EC:2.7.1.68 DEFXREFS:GO:mah|ISBN:0877797099 EDGE|GO:0048149|GO:0030534|is_a EDGE|GO:0035095|GO:0030534|is_a EDGE|GO:0008344|GO:0030534|is_a EDGE|GO:0048150|GO:0030534|is_a EDGE|GO:0048148|GO:0030534|is_a EDGE|GO:0008343|GO:0030534|is_a EDGE|GO:0030534|GO:0007610|is_a DEFXREFS:GO:jic EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0007636|GO:0007630|is_a SYNS:behavioral response to drought|behavioral response to thirst DEFXREFS:GO:jl EDGE|GO:0042630|GO:0009414|is_a EDGE|GO:0042630|GO:0007610|is_a DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0008343|GO:0030534|is_a DEFXREFS:GO:jic|URL:http://cancerweb.ncl.ac.uk EDGE|GO:0048266|GO:0048265|is_a EDGE|GO:0048266|GO:0007610|is_a SYNS:behaviour DEFXREFS:WB:ems|ISBN:0395448956 EDGE|GO:0042630|GO:0007610|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0048266|GO:0007610|is_a EDGE|GO:0030534|GO:0007610|is_a EDGE|GO:0001662|GO:0007610|is_a EDGE|GO:0007631|GO:0007610|is_a EDGE|GO:0007610|GO:0008150|is_a DEFXREFS:MGI:dph|MEDLINE:99119440 EDGE|GO:0001662|GO:0042596|is_a EDGE|GO:0001662|GO:0007610|is_a DEFXREFS:WB:cab|PMID:2181052 EDGE|GO:0043051|GO:0043050|part_of DEFXREFS:GO:jic EDGE|GO:0042048|GO:0007635|is_a DEFXREFS:ISBN:01928006X|GO:jl EDGE|GO:0043050|GO:0042755|is_a EDGE|GO:0042755|GO:0007631|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007636|GO:0007630|is_a EDGE|GO:0007630|GO:0008344|is_a SYNS:drinking|eating DEFXREFS:GO:mah EDGE|GO:0008343|GO:0007631|is_a EDGE|GO:0042595|GO:0007631|is_a EDGE|GO:0042756|GO:0007631|is_a EDGE|GO:0042755|GO:0007631|is_a EDGE|GO:0007631|GO:0007610|is_a DEFXREFS:URL:http://cancerweb.ncl.ac.uk/|GO:jl EDGE|GO:0042756|GO:0007631|is_a DEFXREFS:GO:ai EDGE|GO:0007630|GO:0008344|is_a EDGE|GO:0007629|GO:0008344|is_a EDGE|GO:0007628|GO:0008344|is_a EDGE|GO:0008344|GO:0007626|is_a EDGE|GO:0008344|GO:0030534|is_a SYNS:[eIF-5A]-deoxyhypusine synthase|deoxyhypusine synthase|spermidine dehydrogenase XREFS:EC:2.5.1.46|MetaCyc:2.5.1.46-RXN COMMENT:Note that this reaction is catalyzed by a single enzyme but since it has multiple steps, it appears in the process ontology. DEFXREFS:MetaCyc:1.1.1.249-RXN EDGE|GO:0050983|GO:0046203|is_a DEFXREFS:GO:jic EDGE|GO:0048148|GO:0042220|is_a EDGE|GO:0048148|GO:0030534|is_a DEFXREFS:GO:curators EDGE|GO:0007637|GO:0007635|is_a EDGE|GO:0007636|GO:0007635|is_a EDGE|GO:0042048|GO:0007635|is_a EDGE|GO:0007635|GO:0007610|is_a EDGE|GO:0008150|root|is_a DEFXREFS:GO:jic|ISBN:0198606907 EDGE|GO:0007628|GO:0008344|is_a SYNS:pumping behavior DEFXREFS:PMID:2181052|WB:cab EDGE|GO:0043051|GO:0043050|part_of EDGE|GO:0043050|GO:0042755|is_a total defs:27 total def xrefs:42 total xrefs:2 total comments:2 total syns:12 total EXACT syns:1 total obs:1 total parent rels:37 total (both ways):64 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok t/t070parseannot2obj.t ... 1..5 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 TERM: GO:0003673 Gene_Ontology *DEEP: 86 TERM: GO:0008150 biological_process *DEEP: 52 TERM: GO:0007610 behavior *DEEP: 0 TERM: GO:0000004 biological_process unknown PROD: ziplock *DEEP: 1 TERM: GO:0007154 cell communication *DEEP: 3 TERM: GO:0008037 cell recognition *DEEP: 0 TERM: GO:0007267 cell-cell signaling *DEEP: 0 TERM: GO:0030383 host-pathogen interaction *DEEP: 0 TERM: GO:0009719 response to endogenous stimulus PROD: zip *DEEP: 1 TERM: GO:0009605 response to external stimulus *DEEP: 0 TERM: GO:0009628 response to abiotic stimulus *DEEP: 0 TERM: GO:0009607 response to biotic stimulus *DEEP: 0 TERM: GO:0007165 signal transduction PROD: zpg PROD: Zyx102EF *DEEP: 2 TERM: GO:0008151 cell growth and/or maintenance *DEEP: 18 TERM: GO:0007049 cell cycle PROD: zip PROD: zwilch *DEEP: 2 TERM: GO:0016049 cell growth *DEEP: 0 TERM: GO:0019725 cell homeostasis *DEEP: 0 TERM: GO:0016043 cell organization and biogenesis *DEEP: 3 TERM: GO:0007028 cytoplasm organization and biogenesis *DEEP: 3 TERM: GO:0006996 organelle organization and biogenesis *DEEP: 3 TERM: GO:0007010 cytoskeleton organization and biogenesis PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0007005 mitochondrion organization and biogenesis *DEEP: 0 TERM: GO:0008283 cell proliferation PROD: zip *DEEP: 1 TERM: GO:0006943 chemi-mechanical coupling *DEEP: 0 TERM: GO:0008152 metabolism *DEEP: 10 TERM: GO:0006519 amino acid and derivative metabolism *DEEP: 0 TERM: GO:0009058 biosynthesis *DEEP: 0 TERM: GO:0005975 carbohydrate metabolism PROD: Zw *DEEP: 1 TERM: GO:0009056 catabolism PROD: Zw *DEEP: 1 TERM: GO:0006731 coenzymes and prosthetic group metabolism PROD: Zw *DEEP: 1 TERM: GO:0006118 electron transport *DEEP: 0 TERM: GO:0006091 energy pathways PROD: Zw *DEEP: 1 TERM: GO:0006629 lipid metabolism *DEEP: 0 TERM: GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism PROD: Zw *DEEP: 6 TERM: GO:0006259 DNA metabolism *DEEP: 0 TERM: GO:0006350 transcription PROD: zfh2 PROD: Zfrp8 PROD: Zn72D PROD: Zpr1 PROD: Zyx102EF *DEEP: 5 TERM: GO:0019538 protein metabolism *DEEP: 0 TERM: GO:0006412 protein biosynthesis *DEEP: 0 TERM: GO:0006464 protein modification *DEEP: 0 TERM: GO:0019748 secondary metabolism *DEEP: 0 TERM: GO:0006950 response to stress *DEEP: 0 TERM: GO:0006810 transport *DEEP: 2 TERM: GO:0006811 ion transport PROD: ZIP1 PROD: Zip3 *DEEP: 2 TERM: GO:0015031 protein transport *DEEP: 0 TERM: GO:0016265 death *DEEP: 2 TERM: GO:0008219 cell death PROD: Zfrp8 PROD: zip *DEEP: 2 TERM: GO:0007275 development PROD: zip *DEEP: 23 TERM: GO:0030154 cell differentiation PROD: zip *DEEP: 1 TERM: GO:0009790 embryonic development PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip *DEEP: 5 TERM: GO:0040007 growth *DEEP: 0 TERM: GO:0009653 morphogenesis PROD: zfh2 PROD: zfh2 PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: zip PROD: Zwim *DEEP: 11 TERM: GO:0040029 regulation of gene expression, epigenetic *DEEP: 0 TERM: GO:0000003 reproduction PROD: zip PROD: ziti PROD: zpg PROD: zpg PROD: zuc *DEEP: 5 TERM: GO:0007582 physiological processes PROD: zip PROD: zip PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 5 TERM: GO:0016032 viral life cycle *DEEP: 0 TERM: GO:0005575 cellular_component *DEEP: 13 TERM: GO:0005623 cell PROD: zpg *DEEP: 11 TERM: GO:0005622 intracellular *DEEP: 10 TERM: GO:0005694 chromosome *DEEP: 0 TERM: GO:0005929 cilium *DEEP: 0 TERM: GO:0005737 cytoplasm PROD: zip *DEEP: 4 TERM: GO:0000229 cytoplasmic chromosome *DEEP: 0 TERM: GO:0016023 cytoplasmic vesicle *DEEP: 0 TERM: GO:0005856 cytoskeleton PROD: zip PROD: zip PROD: Zyx102EF *DEEP: 3 TERM: GO:0005829 cytosol *DEEP: 0 TERM: GO:0005783 endoplasmic reticulum *DEEP: 0 TERM: GO:0005768 endosome *DEEP: 0 TERM: GO:0005794 Golgi apparatus *DEEP: 0 TERM: GO:0005811 lipid particle *DEEP: 0 TERM: GO:0005815 microtubule organizing center *DEEP: 0 TERM: GO:0005739 mitochondrion *DEEP: 0 TERM: GO:0005777 peroxisome *DEEP: 0 TERM: GO:0009536 plastid *DEEP: 0 TERM: GO:0005840 ribosome *DEEP: 0 TERM: GO:0005773 vacuole *DEEP: 0 TERM: GO:0005764 lysosome *DEEP: 0 TERM: GO:0005634 nucleus PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0000228 nuclear chromosome *DEEP: 0 TERM: GO:0005635 nuclear membrane *DEEP: 0 TERM: GO:0005730 nucleolus PROD: Zpr1 *DEEP: 1 TERM: GO:0005654 nucleoplasm *DEEP: 0 TERM: GO:0005886 plasma membrane PROD: zpg PROD: zpg *DEEP: 2 TERM: GO:0009579 thylakoid *DEEP: 0 TERM: GO:0008372 cellular_component unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0030312 external encapsulating structure *DEEP: 0 TERM: GO:0030313 cell envelope *DEEP: 0 TERM: GO:0005618 cell wall *DEEP: 0 TERM: GO:0005576 extracellular *DEEP: 0 TERM: GO:0005578 extracellular matrix *DEEP: 0 TERM: GO:0005615 extracellular space *DEEP: 0 TERM: GO:0005941 unlocalized *DEEP: 0 TERM: GO:0003674 molecular_function *DEEP: 21 TERM: GO:0016209 antioxidant activity *DEEP: 0 TERM: GO:0016329 apoptosis regulator activity *DEEP: 0 TERM: GO:0005488 binding *DEEP: 6 TERM: GO:0005509 calcium ion binding *DEEP: 0 TERM: GO:0030246 carbohydrate binding *DEEP: 0 TERM: GO:0008289 lipid binding *DEEP: 0 TERM: GO:0003676 nucleic acid binding *DEEP: 5 TERM: GO:0003677 DNA binding PROD: zfh2 PROD: zfh2 PROD: Zfrp8 *DEEP: 4 TERM: GO:0003682 chromatin binding PROD: Zfrp8 *DEEP: 1 TERM: GO:0003700 transcription factor activity *DEEP: 0 TERM: GO:0004518 nuclease activity *DEEP: 0 TERM: GO:0003723 RNA binding PROD: Zn72D *DEEP: 1 TERM: GO:0008135 translation factor activity, nucleic acid binding *DEEP: 0 TERM: GO:0000166 nucleotide binding *DEEP: 0 TERM: GO:0019825 oxygen binding *DEEP: 0 TERM: GO:0005515 protein binding *DEEP: 1 TERM: GO:0008092 cytoskeletal protein binding PROD: zip *DEEP: 1 TERM: GO:0003779 actin binding *DEEP: 0 TERM: GO:0003824 catalytic activity PROD: Zw PROD: Zw *DEEP: 4 TERM: GO:0016787 hydrolase PROD: zip *DEEP: 1 TERM: GO:0008233 peptidase activity *DEEP: 0 TERM: GO:0004721 protein phosphatase activity *DEEP: 0 TERM: GO:0016301 kinase *DEEP: 1 TERM: GO:0004672 protein kinase activity PROD: Zwim *DEEP: 1 TERM: GO:0016740 transferase *DEEP: 0 TERM: GO:0005194 cell adhesion molecule activity *DEEP: 0 TERM: GO:0003754 chaperone activity *DEEP: 0 TERM: GO:0030188 chaperone regulator activity *DEEP: 0 TERM: GO:0003793 defense/immunity protein activity *DEEP: 0 TERM: GO:0030234 enzyme regulator activity *DEEP: 0 TERM: GO:0005554 molecular_function unknown PROD: ziplock PROD: ziti *DEEP: 2 TERM: GO:0003774 motor activity PROD: zip *DEEP: 1 TERM: GO:0045735 nutrient reservoir activity *DEEP: 0 TERM: GO:0017028 protein stabilization activity *DEEP: 0 TERM: GO:0008638 protein tagging activity *DEEP: 0 TERM: GO:0004871 signal transducer activity *DEEP: 0 TERM: GO:0004872 receptor activity *DEEP: 0 TERM: GO:0005102 receptor binding *DEEP: 0 TERM: GO:0005198 structural molecule activity PROD: zip PROD: zormin PROD: Zyx102EF *DEEP: 3 TERM: GO:0030528 transcription regulator activity PROD: zfh2 PROD: Zyx102EF *DEEP: 2 TERM: GO:0045182 translation regulator *DEEP: 0 TERM: GO:0005215 transporter activity PROD: ZIP1 PROD: Zip3 PROD: zpg *DEEP: 3 TERM: GO:0005489 electron transporter activity *DEEP: 0 TERM: GO:0005216 ion channel activity *DEEP: 0 TERM: GO:0005326 neurotransmitter transporter activity *DEEP: 0 TERM: GO:0030533 triplet codon-amino acid adaptor activity *DEEP: 0 TERM: part_of part_of *DEEP: 0 ok 3 annots: 86 ok 4 Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene Type:gene ok 5 ok t/t080gofmt2.t ........... 1..3 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 '(term (id "GO:0003673") (name "Gene_Ontology") (is_root "1") (namespace "Gene_Ontology")) '(term (id "GO:0003674") (name "molecular_function") (namespace "molecular_function") (relationship (type "part_of") (to "GO:0003673"))) '(term (id "X:1") (name "zoo") (namespace "molecular_function") (is_a "GO:0003674")) '(term (id "X:2") (name "goo") (namespace "molecular_function") (relationship (type "inverse_of") (to "X:1"))) '(term (id "X;3") (name "poo") (namespace "molecular_function") (relationship (type "disjoint_from") (to "X:2"))) '(term (id "X:5") (name "ooh") (namespace "molecular_function") (relationship (type "star") (to "X;3"))) '(term (id "X:6") (name "moo") (namespace "molecular_function") (relationship (type "hash") (to "X:5"))) ok 3 ok t/t100roundtrip.t ........ 1..2 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ./t/data/test-function.dat from:go_ont to:prolog ./t/data/test-function.dat from:go_ont to:obo_xml ./t/data/test-function.dat from:go_ont to:rdf ./t/data/test-function.dat from:go_ont to:pathlist ./t/data/test-function.dat from:go_ont to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat from:go_ont to:obo_text ./t/data/test-function.dat.obo_text from:obo_text to:prolog ./t/data/test-function.dat.obo_text from:obo_text to:rdf ./t/data/test-function.dat.obo_text from:obo_text to:pathlist ./t/data/test-function.dat.obo_text from:obo_text to:summary TOTAL TERMS : 72 TOTAL SYNS : 2 TOTAL XREFS : 17 ./t/data/test-function.dat.obo_text from:obo_text to:obo_xml ./t/data/test-function.dat.obo_text.obo_xml from:obo_xml to:go_ont ok 1 ./t/data/GO.defs from:go_def to:obo_xml ./t/data/GO.defs.obo_xml from:obo_xml to:go_def ok 2 ok t/t110basic.t ............ 1..4 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 GO:0016604 GO:0016604 ok 1 PARENTS nucleoplasm ok 2 Gene_Ontology cell cellular_component intracellular nucleoplasm nucleus ok 3 GO:0005654 RENT complex chromatin remodeling complex chromatin silencing complex nuclear body nuclear speck ok 4 GO:0005654 ok t/t130relations.t ........ 1..7 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 OBO_REL:part_of ok 7 ok t/t140subgraph.t ......... 1..1 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 $Gene_Ontology ; GO:0003673 %molecular_function ; GO:0003674 %nucleic acid binding ; GO:0003676 %DNA binding ; GO:0003677 %transcription factor ; GO:0003700 ; synonym:GO:0000130 ok 1 ok t/t150xref.t ............. 1..2 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:24 2017 # Current time GMT: Wed Aug 30 21:04:24 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok t/t160logicaldef.t ....... 1..5 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ns: biological_process ok 2 ldef ns: foo ok 3 GO:0007626 OBOL:during FBdv:00005336 GO:0007626 ok 4 ok 5 ok t/t170chadoxml.t ......... 1..9 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t175chadoxml_oborel.t .. 1..9 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok t/t180ncbi_taxonomy.t .... 1..4 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ./t/data/sample.ncbi_taxonomy from:ncbi_taxonomy to:obo ok 1 ok 2 ok 3 Phenylobacterium immobile {test} ok 4 ok t/t200impliedlinks.t ..... 1..2 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok t/t210cache.t ............ 1..6 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t220xref_esc.t ......... 1..6 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 UM-BBD_pathwayID:2,4,5-t UM-BBD_pathwayID:2,4,5-t ok 4 ok 5 ok 6 ok t/t230term_expression.t .. 1..1 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 GO:1234 part_of CL:abc GO:1234 part_of CL:abc part_of AO:999 GO:1234 part_of CL:abc part_of AO:999 has_coordinate x:left GO:1234 results_in_output_of CHEBI:765 ^part_of CL:abc part_of AO:999 has_coordinate x:left ok 1 ok t/t240ga2obj.t ........... 1..3 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 ok 2 ok 3 ok t/t260oborel_in_chado.t .. 1..6 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 OBO_REL part_of part_of relationship internal is_transitive cvterm_property_type is_transitive 1 1 OBO_REL part_of ok 1 relationship ok 2 ok 3 ok 4 ok 5 ok 6 ok t/t270oborel_in_owl.t .... 1..4 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 '(owl:TransitiveProperty (@ (rdf:about "http://purl.org/obo/owl/OBO_REL#part_of")) (oboInOwl:hasOBONamespace "relationship") (oboInOwl:hasDbXref (oboInOwl:DbXref (rdfs:label "OBO_REL:part_of") (oboInOwl:hasURI (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#anyURI")) (. "http://purl.org/obo/owl/OBO_REL#OBO_REL_part_of" ))))) ok 1 http://purl.org/obo/owl/OBO_REL#part_of ok 2 '(owl:ObjectProperty (@ (rdf:about "http://purl.org/obo/owl/obo#foo")) (rdfs:label (@ (xml:lang "en")) (. "foo")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 3 '(owl:AnnotationProperty (@ (rdf:about "http://purl.org/obo/owl/obo#bar")) (rdfs:label (@ (xml:lang "en")) (. "bar")) (rdfs:comment (@ (rdf:datatype "http://www.w3.org/2001/XMLSchema#string")) (. "for testing purposes"))) ok 4 ok t/t290disjoint.t ......... 1..2 # Running under perl version 5.026000 for linux # Current time local: Wed Aug 30 21:04:25 2017 # Current time GMT: Wed Aug 30 21:04:25 2017 # Using Test.pm version 1.30 ok 1 GO:0009987 GO:0051704 ok 2 ok All tests successful. Files=24, Tests=140, 3 wallclock secs ( 0.06 usr 0.01 sys + 1.91 cusr 0.09 csys = 2.07 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j4 install DESTDIR=/<>/debian/libgo-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' Manifying 10 pod documents Manifying 38 pod documents Manifying 33 pod documents Installing /<>/debian/libgo-perl/usr/share/perl5/go-perl.pod Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Basic.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Utils.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/ObjCache.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/ObjFactory.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_assoc_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/unknown_format_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/refgenomes_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_emitter.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/locuslink_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ont_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/references_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_ids_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_xref_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/base_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_storable_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/mesh_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/owl_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_xml_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/go_def_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/obo_text_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Parsers/ParserEventNames.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/RDFXML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Blast.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/ObanOwl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Dotty.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/XML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/Analysis.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/go_assoc.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/IO/OBDXML.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/godb_prestore.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_ont.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_sxpr.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/summary.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/pathlist.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/sxpr.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_text.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_godb_flat.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/tbl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_html.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_storable.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/base.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_def.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obo_xml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/rdf.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/prolog.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/owl.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/xsl_base.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/text_html.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/lexanalysis.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/go_xref.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/xml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Handlers/obj_yaml.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Metadata/Panther.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_filter.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/text_html.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Xref.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Relationship.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Modification.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GraphIterator.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Term.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Root.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GraphNodeInstance.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/TreeIterator.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Path.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Species.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Ontology.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Restriction.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Evidence.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/CrossProduct.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Seq.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Association.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Property.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/GeneProduct.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/DB.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/Graph.pm Installing /<>/debian/libgo-perl/usr/share/perl5/GO/Model/LogicalDefinition.pm Installing /<>/debian/libgo-perl/usr/share/man/man1/go-show-assocs-by-node.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-apply-xslt.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go2fmt.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-dag-summary.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-filter-subset.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-export-prolog.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-export-graph.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go2error_report.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/go-show-paths-to-root.pl.1p Installing /<>/debian/libgo-perl/usr/share/man/man1/map2slim.1p Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Property.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Seq.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Evidence.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Graph.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Modification.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::go_assoc.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::base.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::text_html.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::references_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::owl_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Analysis.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::ObjFactory.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_text.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_ont.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::owl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obj.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Term.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::RDFXML.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Metadata::Panther.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Xref.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_def_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/go-perl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Species.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GeneProduct.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Blast.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Association.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::Dotty.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::tbl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::DB.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::godb_prestore.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::summary.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::ObjCache.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Utils.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphIterator.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::LogicalDefinition.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::base_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Basic.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_def.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obj_emitter.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Root.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::xsl_base.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::ObanOwl.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::TreeIterator.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::IO::OBDXML.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::go_xref.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Path.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Relationship.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Ontology.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Handlers::obo_html.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Parsers::mesh_parser.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::CrossProduct.3pm Installing /<>/debian/libgo-perl/usr/share/man/man3/GO::Model::Restriction.3pm Installing /<>/debian/libgo-perl/usr/bin/go2obo_xml Installing /<>/debian/libgo-perl/usr/bin/go2chadoxml Installing /<>/debian/libgo-perl/usr/bin/go2pathlist Installing /<>/debian/libgo-perl/usr/bin/go2obo_html Installing /<>/debian/libgo-perl/usr/bin/go2obo_text Installing /<>/debian/libgo-perl/usr/bin/go-show-assocs-by-node.pl Installing /<>/debian/libgo-perl/usr/bin/go2xml Installing /<>/debian/libgo-perl/usr/bin/go-filter-subset.pl Installing /<>/debian/libgo-perl/usr/bin/go2rdfxml Installing /<>/debian/libgo-perl/usr/bin/go-export-prolog.pl Installing /<>/debian/libgo-perl/usr/bin/go2rdf Installing /<>/debian/libgo-perl/usr/bin/go-show-paths-to-root.pl Installing /<>/debian/libgo-perl/usr/bin/go2text_html Installing /<>/debian/libgo-perl/usr/bin/map2slim Installing /<>/debian/libgo-perl/usr/bin/go2godb_prestore Installing /<>/debian/libgo-perl/usr/bin/go2tbl Installing /<>/debian/libgo-perl/usr/bin/go2obo Installing /<>/debian/libgo-perl/usr/bin/go2owl Installing /<>/debian/libgo-perl/usr/bin/go2error_report Installing /<>/debian/libgo-perl/usr/bin/go-apply-xslt Installing /<>/debian/libgo-perl/usr/bin/go2prolog Installing /<>/debian/libgo-perl/usr/bin/go-export-graph.pl Installing /<>/debian/libgo-perl/usr/bin/go2summary Installing /<>/debian/libgo-perl/usr/bin/go2fmt.pl Installing /<>/debian/libgo-perl/usr/bin/go2sxpr Installing /<>/debian/libgo-perl/usr/bin/go-dag-summary.pl make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install prename 's/\.pl//' /<>/debian/libgo-perl/usr/bin/* /bin/sh: 1: prename: not found debian/rules:9: recipe for target 'override_dh_install' failed make[1]: *** [override_dh_install] Error 127 make[1]: Leaving directory '/<>' debian/rules:6: recipe for target 'binary' failed make: *** [binary] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-30T21:04:26Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 11728 Build-Time: 4 Distribution: experimental Fail-Stage: build Host Architecture: amd64 Install-Time: 10 Job: /srv/debomatic/incoming/libgo-perl_0.15-5.dsc Machine Architecture: amd64 Package: libgo-perl Package-Time: 19 Source-Version: 0.15-5 Space: 11728 Status: attempted Version: 0.15-5 -------------------------------------------------------------------------------- Finished at 2017-08-30T21:04:26Z Build needed 00:00:19, 11728k disk space