sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on carme.larted.org.uk +==============================================================================+ | jellyfish 2.2.6-1 (amd64) Sun, 13 Aug 2017 06:13:45 +0000 | +==============================================================================+ Package: jellyfish Version: 2.2.6-1 Source Version: 2.2.6-1 Distribution: experimental Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/experimental-amd64-debomatic-af5679ed-d264-424d-81dc-c477ac4cc240' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup jellyfish_2.2.6-1 experimental amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup jellyfish_2.2.6-1 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [228 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://localhost:3142/debian unstable/main Sources 2017-08-06-2017.47.pdiff [14.7 kB] Get:5 http://localhost:3142/debian unstable/main Sources 2017-08-07-0223.03.pdiff [13.7 kB] Get:6 http://localhost:3142/debian unstable/main Sources 2017-08-07-0817.53.pdiff [4514 B] Get:7 http://localhost:3142/debian unstable/main Sources 2017-08-07-1417.37.pdiff [6081 B] Get:8 http://localhost:3142/debian unstable/main Sources 2017-08-07-2020.23.pdiff [14.0 kB] Get:9 http://localhost:3142/debian unstable/main Sources 2017-08-08-0225.55.pdiff [7424 B] Get:10 http://localhost:3142/debian unstable/main Sources 2017-08-08-0817.26.pdiff [6038 B] Get:11 http://localhost:3142/debian unstable/main Sources 2017-08-08-1417.26.pdiff [7886 B] Get:12 http://localhost:3142/debian unstable/main Sources 2017-08-08-2018.54.pdiff [26.3 kB] Get:13 http://localhost:3142/debian unstable/main Sources 2017-08-09-0217.27.pdiff [10.3 kB] Get:14 http://localhost:3142/debian unstable/main Sources 2017-08-09-0818.23.pdiff [23.8 kB] Get:15 http://localhost:3142/debian unstable/main Sources 2017-08-09-1421.44.pdiff [21.0 kB] Get:16 http://localhost:3142/debian unstable/main Sources 2017-08-09-2016.45.pdiff [19.8 kB] Get:17 http://localhost:3142/debian unstable/main Sources 2017-08-10-0217.43.pdiff [14.8 kB] Get:18 http://localhost:3142/debian unstable/main Sources 2017-08-10-0816.40.pdiff [6412 B] Get:19 http://localhost:3142/debian unstable/main Sources 2017-08-10-1420.19.pdiff [13.7 kB] Get:20 http://localhost:3142/debian unstable/main Sources 2017-08-10-2019.23.pdiff [14.6 kB] Get:21 http://localhost:3142/debian unstable/main Sources 2017-08-11-0752.10.pdiff [9249 B] Get:22 http://localhost:3142/debian unstable/main Sources 2017-08-11-1417.27.pdiff [7480 B] Get:23 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-06-2017.47.pdiff [12.9 kB] Get:24 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-0223.03.pdiff [10.8 kB] Get:25 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-0817.53.pdiff [4092 B] Get:26 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-1417.37.pdiff [5562 B] Get:27 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-2020.23.pdiff [19.1 kB] Get:28 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-0225.55.pdiff [8221 B] Get:29 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-0817.26.pdiff [10.6 kB] Get:22 http://localhost:3142/debian unstable/main Sources 2017-08-11-1417.27.pdiff [7480 B] Get:30 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-1417.26.pdiff [5967 B] Get:31 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-2018.54.pdiff [44.1 kB] Get:32 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-0217.27.pdiff [26.0 kB] Get:33 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-0818.23.pdiff [22.4 kB] Get:34 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-1421.44.pdiff [95.4 kB] Get:35 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-2016.45.pdiff [62.6 kB] Get:36 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-0217.43.pdiff [38.9 kB] Get:37 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-0816.40.pdiff [10.9 kB] Get:38 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-1420.19.pdiff [23.4 kB] Get:39 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-2019.23.pdiff [18.8 kB] Get:40 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-0752.10.pdiff [12.1 kB] Get:41 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-1417.27.pdiff [4510 B] Get:41 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-1417.27.pdiff [4510 B] Fetched 962 kB in 0s (1099 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ca-certificates curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libsys-hostname-long-perl openssl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following packages will be upgraded: binutils cpp cpp-7 debianutils file g++ g++-7 gcc gcc-7 gcc-7-base libasan4 libassuan0 libatomic1 libcc1-0 libcilkrts5 libgcc-7-dev libgcc1 libgomp1 libitm1 liblsan0 libmagic-mgc libmagic1 libmpx2 libpsl5 libquadmath0 libssl1.1 libstdc++-7-dev libstdc++6 libtsan0 libubsan0 openssl publicsuffix sensible-utils 33 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After this operation, 211 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 debianutils amd64 4.8.2 [100 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 7.1.0-13 [132 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 7.1.0-13 [27.2 kB] Get:4 http://localhost:3142/debian unstable/main amd64 gcc-7-base amd64 7.1.0-13 [180 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 7.1.0-13 [400 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libmpx2 amd64 7.1.0-13 [11.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 7.1.0-13 [75.2 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 7.1.0-13 [8818 B] Get:9 http://localhost:3142/debian unstable/main amd64 libasan4 amd64 7.1.0-13 [348 kB] Get:10 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 7.1.0-13 [125 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libtsan0 amd64 7.1.0-13 [271 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libubsan0 amd64 7.1.0-13 [117 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libcilkrts5 amd64 7.1.0-13 [42.2 kB] Get:14 http://localhost:3142/debian unstable/main amd64 cpp-7 amd64 7.1.0-13 [32.8 MB] Get:15 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 7.1.0-13 [37.8 kB] Get:16 http://localhost:3142/debian unstable/main amd64 g++-7 amd64 7.1.0-13 [35.1 MB] Get:17 http://localhost:3142/debian unstable/main amd64 gcc-7 amd64 7.1.0-13 [31.9 MB] Get:18 http://localhost:3142/debian unstable/main amd64 libgcc-7-dev amd64 7.1.0-13 [2357 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libstdc++-7-dev amd64 7.1.0-13 [1443 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libgcc1 amd64 1:7.1.0-13 [39.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 binutils amd64 2.29-4 [4049 kB] Get:22 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.10 [15.5 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-4 [1349 kB] Get:24 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.31-1 [64.2 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libmagic1 amd64 1:5.31-1 [112 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.31-1 [223 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp amd64 4:7.1.0-2 [18.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 gcc amd64 4:7.1.0-2 [5102 B] Get:29 http://localhost:3142/debian unstable/main amd64 g++ amd64 4:7.1.0-2 [1542 B] Get:30 http://localhost:3142/debian unstable/main amd64 libassuan0 amd64 2.4.3-3 [42.9 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libpsl5 amd64 0.18.0-1 [43.3 kB] Get:32 http://localhost:3142/debian unstable/main amd64 openssl amd64 1.1.0f-4 [725 kB] Get:33 http://localhost:3142/debian unstable/main amd64 publicsuffix all 20170809.0951-1 [100 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 112 MB in 0s (134 MB/s) (Reading database ... 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Setting up libcc1-0:amd64 (7.1.0-13) ... Setting up libasan4:amd64 (7.1.0-13) ... Setting up libcilkrts5:amd64 (7.1.0-13) ... Setting up libpsl5:amd64 (0.18.0-1) ... Setting up libubsan0:amd64 (7.1.0-13) ... Setting up libtsan0:amd64 (7.1.0-13) ... Setting up cpp-7 (7.1.0-13) ... Setting up libmagic-mgc (1:5.31-1) ... Setting up libmagic1:amd64 (1:5.31-1) ... Setting up liblsan0:amd64 (7.1.0-13) ... Setting up libmpx2:amd64 (7.1.0-13) ... Processing triggers for libc-bin (2.24-14) ... Setting up publicsuffix (20170809.0951-1) ... Setting up libssl1.1:amd64 (1.1.0f-4) ... Setting up openssl (1.1.0f-4) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up binutils (2.29-4) ... Setting up libassuan0:amd64 (2.4.3-3) ... Setting up libitm1:amd64 (7.1.0-13) ... Setting up cpp (4:7.1.0-2) ... Setting up file (1:5.31-1) ... Setting up libgcc-7-dev:amd64 (7.1.0-13) ... Setting up libstdc++-7-dev:amd64 (7.1.0-13) ... Setting up gcc-7 (7.1.0-13) ... Setting up g++-7 (7.1.0-13) ... Setting up gcc (4:7.1.0-2) ... Setting up g++ (4:7.1.0-2) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/jellyfish_2.2.6-1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/jellyfish-UIuGkA/jellyfish-2.2.6' with '<>' I: NOTICE: Log filtering will replace 'build/jellyfish-UIuGkA' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ftTlYD/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ftTlYD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ftTlYD/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ftTlYD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ftTlYD/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ftTlYD/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ca-certificates curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libsys-hostname-long-perl openssl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following additional packages will be installed: fakeroot libfakeroot The following NEW packages will be installed: fakeroot libfakeroot sbuild-build-depends-core-dummy 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 374 kB of additional disk space will be used. Get:1 copy:/<>/resolver-ftTlYD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [790 B] Get:2 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:3 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (0 B/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... 18580 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.21-3.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.21-3.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.21-3.1_amd64.deb ... Unpacking fakeroot (1.21-3.1) ... Selecting previously unselected package sbuild-build-depends-core-dummy. Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... Setting up libfakeroot:amd64 (1.21-3.1) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, yaggo, pkg-config, bc, time, procps, valgrind, swig, python3-all-dev, dh-python, perl, chrpath Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, d-shlibs, yaggo, pkg-config, bc, time, procps, valgrind, swig, python3-all-dev, dh-python, perl, chrpath dpkg-deb: building package 'sbuild-build-depends-jellyfish-dummy' in '/<>/resolver-ftTlYD/apt_archive/sbuild-build-depends-jellyfish-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-jellyfish-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-ftTlYD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ftTlYD/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-ftTlYD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ftTlYD/apt_archive ./ Sources [569 B] Get:5 copy:/<>/resolver-ftTlYD/apt_archive ./ Packages [651 B] Fetched 2183 B in 0s (0 B/s) Reading package lists... Reading package lists... Install jellyfish build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libstdc++-6-dev libsys-hostname-long-perl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following additional packages will be installed: bc chrpath d-shlibs dh-python libc6-dbg libexpat1 libexpat1-dev libmpdec2 libprocps6 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libruby2.3 libyaml-0-2 mime-support pkg-config procps python3 python3-all python3-all-dev python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal python3.6 python3.6-dev python3.6-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration swig swig3.0 time valgrind yaggo Suggested packages: python3-doc python3-tk python3-venv python3.5-venv python3.5-doc binfmt-support python3.6-venv python3.6-doc ri ruby-dev bundler swig-doc swig-examples swig3.0-examples swig3.0-doc valgrind-mpi kcachegrind alleyoop valkyrie Recommended packages: psmisc zip fonts-lato libjs-jquery valgrind-dbg gdb The following NEW packages will be installed: bc chrpath d-shlibs dh-python libc6-dbg libexpat1 libexpat1-dev libmpdec2 libprocps6 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libruby2.3 libyaml-0-2 mime-support pkg-config procps python3 python3-all python3-all-dev python3-dev python3-minimal python3.5 python3.5-dev python3.5-minimal python3.6 python3.6-dev python3.6-minimal rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-jellyfish-dummy swig swig3.0 time valgrind yaggo 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 83.2 MB of archives. After this operation, 242 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ftTlYD/apt_archive ./ sbuild-build-depends-jellyfish-dummy 0.invalid.0 [868 B] Get:2 http://localhost:3142/debian unstable/main amd64 libpython3.5-minimal amd64 3.5.4-1 [579 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.2.3-1 [87.5 kB] Get:4 http://localhost:3142/debian unstable/main amd64 python3.5-minimal amd64 3.5.4-1 [1681 kB] Get:5 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.5.3-3 [35.4 kB] Get:6 http://localhost:3142/debian unstable/main amd64 mime-support all 3.60 [36.7 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libmpdec2 amd64 2.4.2-1 [85.2 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libpython3.5-stdlib amd64 3.5.4-1 [2174 kB] Get:9 http://localhost:3142/debian unstable/main amd64 python3.5 amd64 3.5.4-1 [241 kB] Get:10 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.5.3-3 [18.8 kB] Get:11 http://localhost:3142/debian unstable/main amd64 dh-python all 2.20170125 [86.8 kB] Get:12 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.5.3-3 [21.8 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libpython3.6-minimal amd64 3.6.2-2 [599 kB] Get:14 http://localhost:3142/debian unstable/main amd64 python3.6-minimal amd64 3.6.2-2 [1429 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libprocps6 amd64 2:3.3.12-3 [58.1 kB] Get:16 http://localhost:3142/debian unstable/main amd64 procps amd64 2:3.3.12-3 [249 kB] Get:17 http://localhost:3142/debian unstable/main amd64 bc amd64 1.06.95-9+b3 [105 kB] Get:18 http://localhost:3142/debian unstable/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get:19 http://localhost:3142/debian unstable/main amd64 d-shlibs all 0.81 [18.7 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libc6-dbg amd64 2.24-14 [9192 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libexpat1-dev amd64 2.2.3-1 [136 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libpython3.5 amd64 3.5.4-1 [1365 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libpython3.5-dev amd64 3.5.4-1 [38.0 MB] Get:24 http://localhost:3142/debian unstable/main amd64 libpython3-dev amd64 3.5.3-3 [18.9 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libpython3.6-stdlib amd64 3.6.2-2 [2105 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libpython3.6 amd64 3.6.2-2 [1416 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libpython3.6-dev amd64 3.6.2-2 [2434 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libpython3-all-dev amd64 3.5.3-3 [970 B] Get:29 http://localhost:3142/debian unstable/main amd64 rubygems-integration all 1.11 [4994 B] Get:30 http://localhost:3142/debian unstable/main amd64 ruby2.3 amd64 2.3.3-1 [186 kB] Get:31 http://localhost:3142/debian unstable/main amd64 ruby amd64 1:2.3.3 [10.8 kB] Get:32 http://localhost:3142/debian unstable/main amd64 rake all 12.0.0-1 [45.7 kB] Get:33 http://localhost:3142/debian unstable/main amd64 ruby-did-you-mean all 1.0.0-2 [11.2 kB] Get:34 http://localhost:3142/debian unstable/main amd64 ruby-minitest all 5.10.3-1 [53.5 kB] Get:35 http://localhost:3142/debian unstable/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get:36 http://localhost:3142/debian unstable/main amd64 ruby-power-assert all 0.3.0-1 [7902 B] Get:37 http://localhost:3142/debian unstable/main amd64 ruby-test-unit all 3.2.5-1 [71.7 kB] Get:38 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.1.7-2 [47.6 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libruby2.3 amd64 2.3.3-1 [3104 kB] Get:40 http://localhost:3142/debian unstable/main amd64 pkg-config amd64 0.29-4+b1 [63.3 kB] Get:41 http://localhost:3142/debian unstable/main amd64 python3.6 amd64 3.6.2-2 [211 kB] Get:42 http://localhost:3142/debian unstable/main amd64 python3-all amd64 3.5.3-3 [944 B] Get:43 http://localhost:3142/debian unstable/main amd64 python3.5-dev amd64 3.5.4-1 [429 kB] Get:44 http://localhost:3142/debian unstable/main amd64 python3-dev amd64 3.5.3-3 [1154 B] Get:45 http://localhost:3142/debian unstable/main amd64 python3.6-dev amd64 3.6.2-2 [501 kB] Get:46 http://localhost:3142/debian unstable/main amd64 python3-all-dev amd64 3.5.3-3 [972 B] Get:47 http://localhost:3142/debian unstable/main amd64 swig3.0 amd64 3.0.10-1.2 [1368 kB] Get:48 http://localhost:3142/debian unstable/main amd64 swig amd64 3.0.10-1.2 [305 kB] Get:49 http://localhost:3142/debian unstable/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 valgrind amd64 1:3.13.0-1 [14.5 MB] Get:51 http://localhost:3142/debian unstable/main amd64 yaggo all 1.5.9-1 [18.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.2 MB in 0s (119 MB/s) Selecting previously unselected package libpython3.5-minimal:amd64. (Reading database ... 18629 files and directories currently installed.) Preparing to unpack .../0-libpython3.5-minimal_3.5.4-1_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.4-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../1-libexpat1_2.2.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.3-1) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../2-python3.5-minimal_3.5.4-1_amd64.deb ... Unpacking python3.5-minimal (3.5.4-1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../3-python3-minimal_3.5.3-3_amd64.deb ... Unpacking python3-minimal (3.5.3-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../4-mime-support_3.60_all.deb ... Unpacking mime-support (3.60) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../5-libmpdec2_2.4.2-1_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-1) ... Selecting previously unselected package libpython3.5-stdlib:amd64. Preparing to unpack .../6-libpython3.5-stdlib_3.5.4-1_amd64.deb ... Unpacking libpython3.5-stdlib:amd64 (3.5.4-1) ... Selecting previously unselected package python3.5. Preparing to unpack .../7-python3.5_3.5.4-1_amd64.deb ... Unpacking python3.5 (3.5.4-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.5.3-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.5.3-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../9-dh-python_2.20170125_all.deb ... Unpacking dh-python (2.20170125) ... Setting up libpython3.5-minimal:amd64 (3.5.4-1) ... Setting up libexpat1:amd64 (2.2.3-1) ... Setting up python3.5-minimal (3.5.4-1) ... Setting up python3-minimal (3.5.3-3) ... Selecting previously unselected package python3. (Reading database ... 19578 files and directories currently installed.) Preparing to unpack .../00-python3_3.5.3-3_amd64.deb ... Unpacking python3 (3.5.3-3) ... Selecting previously unselected package libpython3.6-minimal:amd64. Preparing to unpack .../01-libpython3.6-minimal_3.6.2-2_amd64.deb ... Unpacking libpython3.6-minimal:amd64 (3.6.2-2) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../02-python3.6-minimal_3.6.2-2_amd64.deb ... Unpacking python3.6-minimal (3.6.2-2) ... Selecting previously unselected package libprocps6:amd64. Preparing to unpack .../03-libprocps6_2%3a3.3.12-3_amd64.deb ... Unpacking libprocps6:amd64 (2:3.3.12-3) ... Selecting previously unselected package procps. Preparing to unpack .../04-procps_2%3a3.3.12-3_amd64.deb ... Unpacking procps (2:3.3.12-3) ... Selecting previously unselected package bc. Preparing to unpack .../05-bc_1.06.95-9+b3_amd64.deb ... Unpacking bc (1.06.95-9+b3) ... Selecting previously unselected package chrpath. Preparing to unpack .../06-chrpath_0.16-2+b1_amd64.deb ... 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Selecting previously unselected package valgrind. Preparing to unpack .../38-valgrind_1%3a3.13.0-1_amd64.deb ... Unpacking valgrind (1:3.13.0-1) ... Selecting previously unselected package yaggo. Preparing to unpack .../39-yaggo_1.5.9-1_all.deb ... Unpacking yaggo (1.5.9-1) ... Selecting previously unselected package sbuild-build-depends-jellyfish-dummy. Preparing to unpack .../40-sbuild-build-depends-jellyfish-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-jellyfish-dummy (0.invalid.0) ... Setting up chrpath (0.16-2+b1) ... Setting up libc6-dbg:amd64 (2.24-14) ... Setting up swig3.0 (3.0.10-1.2) ... Setting up time (1.7-25.1+b1) ... Setting up mime-support (3.60) ... Setting up d-shlibs (0.81) ... Setting up libprocps6:amd64 (2:3.3.12-3) ... Setting up procps (2:3.3.12-3) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libpython3.6-minimal:amd64 (3.6.2-2) ... Setting up pkg-config (0.29-4+b1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:amd64 (0.1.7-2) ... Processing triggers for libc-bin (2.24-14) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up rubygems-integration (1.11) ... Setting up libexpat1-dev:amd64 (2.2.3-1) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up valgrind (1:3.13.0-1) ... Setting up bc (1.06.95-9+b3) ... Setting up ruby-minitest (5.10.3-1) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libpython3.6-stdlib:amd64 (3.6.2-2) ... Setting up swig (3.0.10-1.2) ... Setting up libpython3.5-stdlib:amd64 (3.5.4-1) ... Setting up python3.6-minimal (3.6.2-2) ... Setting up libpython3.6:amd64 (3.6.2-2) ... Setting up python3.5 (3.5.4-1) ... Setting up libpython3-stdlib:amd64 (3.5.3-3) ... Setting up python3.6 (3.6.2-2) ... Setting up libpython3.5:amd64 (3.5.4-1) ... Setting up libpython3.6-dev:amd64 (3.6.2-2) ... Setting up libpython3.5-dev:amd64 (3.5.4-1) ... Setting up python3.6-dev (3.6.2-2) ... Setting up python3.5-dev (3.5.4-1) ... Setting up libpython3-dev:amd64 (3.5.3-3) ... Setting up libpython3-all-dev:amd64 (3.5.3-3) ... Setting up dh-python (2.20170125) ... Setting up python3 (3.5.3-3) ... Setting up python3-dev (3.5.3-3) ... Setting up ruby2.3 (2.3.3-1) ... Setting up python3-all (3.5.3-3) ... Setting up ruby (1:2.3.3) ... Setting up yaggo (1.5.9-1) ... Setting up ruby-test-unit (3.2.5-1) ... Setting up python3-all-dev (3.5.3-3) ... Setting up rake (12.0.0-1) ... Setting up sbuild-build-depends-jellyfish-dummy (0.invalid.0) ... Setting up libruby2.3:amd64 (2.3.3-1) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-3-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-4 dpkg-dev_1.18.24 g++-5_5.4.1-11 g++-6_6.4.0-3 g++-7_7.1.0-13 gcc-5_5.4.1-11 gcc-6_6.4.0-3 gcc-7_7.1.0-13 libc6-dev_2.24-14 libstdc++-5-dev_5.4.1-11 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.1.0-13 libstdc++6_7.1.0-13 linux-libc-dev_4.11.11-1+b1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 bc_1.06.95-9+b3 binutils_2.29-4 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 chrpath_0.16-2+b1 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-5_5.4.1-11 cpp-6_6.4.0-3 cpp-7_7.1.0-13 curl_7.52.1-5 d-shlibs_0.81 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2+revertunsafeinc2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-python_2.20170125 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-5_5.4.1-11 g++-6_6.4.0-3 g++-7_7.1.0-13 gcc_4:7.1.0-2 gcc-4.9-base_4.9.3-14 gcc-5_5.4.1-11 gcc-5-base_5.4.1-11 gcc-6_6.4.0-3 gcc-6-base_6.4.0-3 gcc-7_7.1.0-13 gcc-7-base_7.1.0-13 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 initscripts_2.88dsf-59.9 insserv_1.14.0-5.4+b1 intltool-debian_0.35.0+20060710.4 krb5-locales_1.15.1-2 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-cpio-perl_0.10-1 libarchive-zip-perl_1.59-1 libasan2_5.4.1-11 libasan3_6.4.0-3 libasan4_7.1.0-13 libassuan0_2.4.3-3 libatomic1_7.1.0-13 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libblkid1_2.29.2-2 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dbg_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-13 libcilkrts5_7.1.0-13 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcurl3_7.52.1-5 libdb5.3_5.3.28-13 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-5-dev_5.4.1-11 libgcc-6-dev_6.4.0-3 libgcc-7-dev_7.1.0-13 libgcc1_1:7.1.0-13 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libglib2.0-data_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-13 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhogweed4_3.3-1+b1 libicu57_57.1-6 libidn2-0_2.0.2-1 libisl15_0.18-1 libitm1_7.1.0-13 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblsan0_7.1.0-13 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmail-sendmail-perl_0.79.16-2 libmount1_2.29.2-2 libmpc3_1.0.3-1+b2 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx0_5.4.1-11 libmpx2_7.1.0-13 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1+b1 libnghttp2-14_1.24.0-1 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.22_5.22.2-1 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libprocps6_2:3.3.12-3 libpsl5_0.18.0-1 libpython3-all-dev_3.5.3-3 libpython3-dev_3.5.3-3 libpython3-stdlib_3.5.3-3 libpython3.5_3.5.4-1 libpython3.5-dev_3.5.4-1 libpython3.5-minimal_3.5.4-1 libpython3.5-stdlib_3.5.4-1 libpython3.6_3.6.2-2 libpython3.6-dev_3.6.2-2 libpython3.6-minimal_3.6.2-2 libpython3.6-stdlib_3.6.2-2 libquadmath0_7.1.0-13 libreadline6_6.3-9 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libruby2.3_2.3.3-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-4 libstdc++-5-dev_5.4.1-11 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.1.0-13 libstdc++6_7.1.0-13 libsys-hostname-long-perl_1.5-1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.1.0-13 libubsan0_7.1.0-13 libudev1_234-2 libunistring2_0.9.7-2 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2 libxml2_2.9.4+dfsg1-3 libyaml-0-2_0.1.7-2 linux-libc-dev_4.11.11-1+b1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mime-support_3.60 mount_2.29.2-2 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-4 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.22_5.22.2-1 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 pkg-config_0.29-4+b1 po-debconf_1.0.20 procps_2:3.3.12-3 publicsuffix_20170809.0951-1 python3_3.5.3-3 python3-all_3.5.3-3 python3-all-dev_3.5.3-3 python3-dev_3.5.3-3 python3-minimal_3.5.3-3 python3.5_3.5.4-1 python3.5-dev_3.5.4-1 python3.5-minimal_3.5.4-1 python3.6_3.6.2-2 python3.6-dev_3.6.2-2 python3.6-minimal_3.6.2-2 rake_12.0.0-1 readline-common_7.0-3 ruby_1:2.3.3 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby2.3_2.3.3-1 rubygems-integration_1.11 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-jellyfish-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sgml-base_1.29 shared-mime-info_1.8-1 startpar_0.59-3.1 swig_3.0.10-1.2 swig3.0_3.0.10-1.2 sysv-rc_2.88dsf-59.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 time_1.7-25.1+b1 tzdata_2017b-2 util-linux_2.29.2-2 valgrind_1:3.13.0-1 xdg-user-dirs_0.15-2+b1 xml-core_0.17 xz-utils_5.2.2-1.3 yaggo_1.5.9-1 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Aug 30 12:23:15 2016 UTC gpgv: using RSA key 578A0494D1C646D1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./jellyfish_2.2.6-1.dsc dpkg-source: info: extracting jellyfish in /<> dpkg-source: info: unpacking jellyfish_2.2.6.orig.tar.gz dpkg-source: info: unpacking jellyfish_2.2.6-1.debian.tar.xz dpkg-source: info: applying pkg-config-with-name dpkg-source: info: applying drop-rpath dpkg-source: info: applying modern-g++ dpkg-source: info: applying spelling dpkg-source: info: applying rename-python-module-to-dna_jellyfish.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network jellyfish_2.2.6-1 experimental amd64 ----------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network jellyfish_2.2.6-1 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C LC_ALL=POSIX LC_CTYPE=C.UTF-8 LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=experimental-amd64-debomatic SCHROOT_CHROOT_NAME=experimental-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=112 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=experimental-amd64-debomatic-af5679ed-d264-424d-81dc-c477ac4cc240 SCHROOT_UID=1001 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_ID=c1736094 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package jellyfish dpkg-buildpackage: info: source version 2.2.6-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source -Zxz --before-build jellyfish-2.2.6 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf,python3 #--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' set -e && for i in 3.6 3.5; do \ cd swig/python ; \ python$i ./setup.py clean --all 2> /dev/null; \ cd ../.. ; \ done Running swig: swig -c++ -python -module dna_jellyfish -o jellyfish_wrap.cxx ../jellyfish.i running clean running clean dh_auto_clean make[1]: Leaving directory '/<>' dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean if [ -d debian/tmp_save_tests ] ; then \ mv debian/tmp_save_tests/* tests ; \ rmdir debian/tmp_save_tests ; \ fi rm -f tests/compat.sh rm -f swig/python/jellyfish* swig/python/dna_jellyfish.py make[1]: Leaving directory '/<>' dpkg-source -Zxz -b jellyfish-2.2.6 dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building jellyfish using existing ./jellyfish_2.2.6.orig.tar.gz dpkg-source: info: building jellyfish in jellyfish_2.2.6-1.debian.tar.xz dpkg-source: info: building jellyfish in jellyfish_2.2.6-1.dsc debian/rules build dh build --with autoreconf,python3 #--parallel dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:8: installing './compile' configure.ac:2: installing './config.guess' configure.ac:2: installing './config.sub' configure.ac:4: installing './install-sh' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-swig --enable-perl-binding ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for md5sum... md5sum checking for yaggo... /usr/bin/yaggo checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for __int128... yes checking for std::numeric_limits<__int128>... no checking for _NSGetExecutablePath... no checking for execinfo.h... yes checking for ext/stdio_filebuf.h... yes checking for siginfo_t.si_int... yes checking for swig... /usr/bin/swig checking SWIG version... 3.0.10 checking for SWIG library... /usr/share/swig3.0 checking for perl... /usr/bin/perl checking for Perl prefix... /usr checking for Perl extension include path... /usr/lib/x86_64-linux-gnu/perl/5.26/CORE checking for Perl extension target directory... /usr/lib/perl/5.26.0 checking for Perl extensions C preprocessor flags... -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include checking for Perl extensions linker flags... -shared -L/usr/local/lib -fstack-protector-strong checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tests/compat.sh config.status: creating jellyfish-2.0.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' mkdir -p debian/tmp_save_tests cp -a tests/* debian/tmp_save_tests dh_auto_build -- all bin/generate_sequence bin/test_all make -j1 all bin/generate_sequence bin/test_all make[2]: Entering directory '/<>' /usr/bin/yaggo --license ./header-license -o sub_commands/count_main_cmdline.hpp sub_commands/count_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/info_main_cmdline.hpp sub_commands/info_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/dump_main_cmdline.hpp sub_commands/dump_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/histo_main_cmdline.hpp sub_commands/histo_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/stats_main_cmdline.hpp sub_commands/stats_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/merge_main_cmdline.hpp sub_commands/merge_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/bc_main_cmdline.hpp sub_commands/bc_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/query_main_cmdline.hpp sub_commands/query_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/cite_main_cmdline.hpp sub_commands/cite_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o sub_commands/mem_main_cmdline.hpp sub_commands/mem_main_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o jellyfish/generate_sequence_cmdline.hpp jellyfish/generate_sequence_cmdline.yaggo /usr/bin/yaggo --license ./header-license -o unit_tests/test_main_cmdline.hpp unit_tests/test_main_cmdline.yaggo /usr/bin/swig -c++ -perl5 -I./../include -o swig/perl5/swig_wrap.cpp swig/jellyfish.i make all-am make[3]: Entering directory '/<>' /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -g -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o lib/rectangular_binary_matrix.lo lib/rectangular_binary_matrix.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wall -Wnon-virtual-dtor -I. -I./include -g -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong 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lib/misc.o lib/int128.o lib/thread_exec.o lib/jsoncpp.o lib/time.o lib/generator_manager.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libjellyfish-2.0.a libtool: link: ( cd ".libs" && rm -f "libjellyfish-2.0.la" && ln -s "../libjellyfish-2.0.la" "libjellyfish-2.0.la" ) /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/x86_64-linux-gnu/perl/5.26/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo `test -f 'swig/perl5/swig_wrap.cpp' || echo './'`swig/perl5/swig_wrap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/lib/x86_64-linux-gnu/perl/5.26/CORE -I./include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++0x -g -O3 -Werror -std=c++0x -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c swig/perl5/swig_wrap.cpp -fPIC -DPIC -o swig/perl5/.libs/swig_perl5_jellyfish_la-swig_wrap.o swig/perl5/swig_wrap.cpp:1980:36: error: dynamic exception specifications are deprecated in C++11 [-Werror=deprecated] QueryMerFile(const char* path) throw(std::runtime_error) { ^~~~~ swig/perl5/swig_wrap.cpp:2023:35: error: dynamic exception specifications are deprecated in C++11 [-Werror=deprecated] ReadMerFile(const char* path) throw(std::runtime_error) : ^~~~~ cc1plus: all warnings being treated as errors Makefile:1655: recipe for target 'swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo' failed make[3]: *** [swig/perl5/swig_perl5_jellyfish_la-swig_wrap.lo] Error 1 make[3]: Leaving directory '/<>' Makefile:946: recipe for target 'all' failed make[2]: *** [all] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: make -j1 all bin/generate_sequence bin/test_all returned exit code 2 debian/rules:63: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>' debian/rules:16: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-13T06:14:43Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 20160 Build-Time: 26 Distribution: experimental Fail-Stage: build Host Architecture: amd64 Install-Time: 13 Job: /srv/debomatic/incoming/jellyfish_2.2.6-1.dsc Machine Architecture: amd64 Package: jellyfish Package-Time: 58 Source-Version: 2.2.6-1 Space: 20160 Status: attempted Version: 2.2.6-1 -------------------------------------------------------------------------------- Finished at 2017-08-13T06:14:43Z Build needed 00:00:58, 20160k disk space