sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on carme.larted.org.uk +==============================================================================+ | canu 1.5+dfsg-1 (amd64) Sun, 13 Aug 2017 01:53:56 +0000 | +==============================================================================+ Package: canu Version: 1.5+dfsg-1 Source Version: 1.5+dfsg-1 Distribution: experimental Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: full I: NOTICE: Log filtering will replace 'var/run/schroot/mount/experimental-amd64-debomatic-8b6051db-b7d0-4e8c-98aa-7531f2fcfaf8' with '<>' +------------------------------------------------------------------------------+ | Chroot Setup Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup canu_1.5+dfsg-1 experimental amd64 --------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/chroot-setup-commands/dpkg-speedup canu_1.5+dfsg-1 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [228 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://localhost:3142/debian unstable/main Sources 2017-08-06-2017.47.pdiff [14.7 kB] Get:5 http://localhost:3142/debian unstable/main Sources 2017-08-07-0223.03.pdiff [13.7 kB] Get:6 http://localhost:3142/debian unstable/main Sources 2017-08-07-0817.53.pdiff [4514 B] Get:7 http://localhost:3142/debian unstable/main Sources 2017-08-07-1417.37.pdiff [6081 B] Get:8 http://localhost:3142/debian unstable/main Sources 2017-08-07-2020.23.pdiff [14.0 kB] Get:9 http://localhost:3142/debian unstable/main Sources 2017-08-08-0225.55.pdiff [7424 B] Get:10 http://localhost:3142/debian unstable/main Sources 2017-08-08-0817.26.pdiff [6038 B] Get:11 http://localhost:3142/debian unstable/main Sources 2017-08-08-1417.26.pdiff [7886 B] Get:12 http://localhost:3142/debian unstable/main Sources 2017-08-08-2018.54.pdiff [26.3 kB] Get:13 http://localhost:3142/debian unstable/main Sources 2017-08-09-0217.27.pdiff [10.3 kB] Get:14 http://localhost:3142/debian unstable/main Sources 2017-08-09-0818.23.pdiff [23.8 kB] Get:15 http://localhost:3142/debian unstable/main Sources 2017-08-09-1421.44.pdiff [21.0 kB] Get:16 http://localhost:3142/debian unstable/main Sources 2017-08-09-2016.45.pdiff [19.8 kB] Get:17 http://localhost:3142/debian unstable/main Sources 2017-08-10-0217.43.pdiff [14.8 kB] Get:18 http://localhost:3142/debian unstable/main Sources 2017-08-10-0816.40.pdiff [6412 B] Get:19 http://localhost:3142/debian unstable/main Sources 2017-08-10-1420.19.pdiff [13.7 kB] Get:20 http://localhost:3142/debian unstable/main Sources 2017-08-10-2019.23.pdiff [14.6 kB] Get:21 http://localhost:3142/debian unstable/main Sources 2017-08-11-0752.10.pdiff [9249 B] Get:22 http://localhost:3142/debian unstable/main Sources 2017-08-11-1417.27.pdiff [7480 B] Get:23 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-06-2017.47.pdiff [12.9 kB] Get:24 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-0223.03.pdiff [10.8 kB] Get:25 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-0817.53.pdiff [4092 B] Get:26 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-1417.37.pdiff [5562 B] Get:27 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-07-2020.23.pdiff [19.1 kB] Get:28 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-0225.55.pdiff [8221 B] Get:22 http://localhost:3142/debian unstable/main Sources 2017-08-11-1417.27.pdiff [7480 B] Get:29 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-0817.26.pdiff [10.6 kB] Get:30 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-1417.26.pdiff [5967 B] Get:31 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-08-2018.54.pdiff [44.1 kB] Get:32 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-0217.27.pdiff [26.0 kB] Get:33 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-0818.23.pdiff [22.4 kB] Get:34 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-1421.44.pdiff [95.4 kB] Get:35 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-09-2016.45.pdiff [62.6 kB] Get:36 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-0217.43.pdiff [38.9 kB] Get:37 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-0816.40.pdiff [10.9 kB] Get:38 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-1420.19.pdiff [23.4 kB] Get:39 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-10-2019.23.pdiff [18.8 kB] Get:40 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-0752.10.pdiff [12.1 kB] Get:41 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-1417.27.pdiff [4510 B] Get:41 http://localhost:3142/debian unstable/main amd64 Packages 2017-08-11-1417.27.pdiff [4510 B] Fetched 962 kB in 0s (1169 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: ca-certificates curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libsys-hostname-long-perl openssl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following packages will be upgraded: binutils cpp cpp-7 debianutils file g++ g++-7 gcc gcc-7 gcc-7-base libasan4 libassuan0 libatomic1 libcc1-0 libcilkrts5 libgcc-7-dev libgcc1 libgomp1 libitm1 liblsan0 libmagic-mgc libmagic1 libmpx2 libpsl5 libquadmath0 libssl1.1 libstdc++-7-dev libstdc++6 libtsan0 libubsan0 openssl publicsuffix sensible-utils 33 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After this operation, 211 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 debianutils amd64 4.8.2 [100 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 7.1.0-13 [132 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 7.1.0-13 [27.2 kB] Get:4 http://localhost:3142/debian unstable/main amd64 gcc-7-base amd64 7.1.0-13 [180 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 7.1.0-13 [400 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libmpx2 amd64 7.1.0-13 [11.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 7.1.0-13 [75.2 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 7.1.0-13 [8818 B] Get:9 http://localhost:3142/debian unstable/main amd64 libasan4 amd64 7.1.0-13 [348 kB] Get:10 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 7.1.0-13 [125 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libtsan0 amd64 7.1.0-13 [271 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libubsan0 amd64 7.1.0-13 [117 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libcilkrts5 amd64 7.1.0-13 [42.2 kB] Get:14 http://localhost:3142/debian unstable/main amd64 cpp-7 amd64 7.1.0-13 [32.8 MB] Get:15 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 7.1.0-13 [37.8 kB] Get:16 http://localhost:3142/debian unstable/main amd64 g++-7 amd64 7.1.0-13 [35.1 MB] Get:17 http://localhost:3142/debian unstable/main amd64 gcc-7 amd64 7.1.0-13 [31.9 MB] Get:18 http://localhost:3142/debian unstable/main amd64 libgcc-7-dev amd64 7.1.0-13 [2357 kB] Get:19 http://localhost:3142/debian unstable/main amd64 libstdc++-7-dev amd64 7.1.0-13 [1443 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libgcc1 amd64 1:7.1.0-13 [39.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 binutils amd64 2.29-4 [4049 kB] Get:22 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.10 [15.5 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libssl1.1 amd64 1.1.0f-4 [1349 kB] Get:24 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.31-1 [64.2 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libmagic1 amd64 1:5.31-1 [112 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.31-1 [223 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp amd64 4:7.1.0-2 [18.9 kB] Get:28 http://localhost:3142/debian unstable/main amd64 gcc amd64 4:7.1.0-2 [5102 B] Get:29 http://localhost:3142/debian unstable/main amd64 g++ amd64 4:7.1.0-2 [1542 B] Get:30 http://localhost:3142/debian unstable/main amd64 libassuan0 amd64 2.4.3-3 [42.9 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libpsl5 amd64 0.18.0-1 [43.3 kB] Get:32 http://localhost:3142/debian unstable/main amd64 openssl amd64 1.1.0f-4 [725 kB] Get:33 http://localhost:3142/debian unstable/main amd64 publicsuffix all 20170809.0951-1 [100 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 112 MB in 0s (150 MB/s) (Reading database ... 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Setting up libcc1-0:amd64 (7.1.0-13) ... Setting up libasan4:amd64 (7.1.0-13) ... Setting up libcilkrts5:amd64 (7.1.0-13) ... Setting up libpsl5:amd64 (0.18.0-1) ... Setting up libubsan0:amd64 (7.1.0-13) ... Setting up libtsan0:amd64 (7.1.0-13) ... Setting up cpp-7 (7.1.0-13) ... Setting up libmagic-mgc (1:5.31-1) ... Setting up libmagic1:amd64 (1:5.31-1) ... Setting up liblsan0:amd64 (7.1.0-13) ... Setting up libmpx2:amd64 (7.1.0-13) ... Processing triggers for libc-bin (2.24-14) ... Setting up publicsuffix (20170809.0951-1) ... Setting up libssl1.1:amd64 (1.1.0f-4) ... Setting up openssl (1.1.0f-4) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up binutils (2.29-4) ... Setting up libassuan0:amd64 (2.4.3-3) ... Setting up libitm1:amd64 (7.1.0-13) ... Setting up cpp (4:7.1.0-2) ... Setting up file (1:5.31-1) ... Setting up libgcc-7-dev:amd64 (7.1.0-13) ... Setting up libstdc++-7-dev:amd64 (7.1.0-13) ... Setting up gcc-7 (7.1.0-13) ... Setting up g++-7 (7.1.0-13) ... Setting up gcc (4:7.1.0-2) ... Setting up g++ (4:7.1.0-2) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- /srv/debomatic/incoming/canu_1.5+dfsg-1.dsc exists in /srv/debomatic/incoming; copying to chroot I: NOTICE: Log filtering will replace 'build/canu-3J2e3q/canu-1.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/canu-3J2e3q' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-IFYN1A/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-IFYN1A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IFYN1A/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-IFYN1A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IFYN1A/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-IFYN1A/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ca-certificates curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libssl1.1 libstdc++-6-dev libsys-hostname-long-perl openssl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following additional packages will be installed: fakeroot libfakeroot The following NEW packages will be installed: fakeroot libfakeroot sbuild-build-depends-core-dummy 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 132 kB of archives. After this operation, 374 kB of additional disk space will be used. Get:1 copy:/<>/resolver-IFYN1A/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [790 B] Get:2 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.21-3.1 [45.7 kB] Get:3 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.21-3.1 [85.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 kB in 0s (0 B/s) Selecting previously unselected package libfakeroot:amd64. (Reading database ... 18580 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.21-3.1_amd64.deb ... Unpacking libfakeroot:amd64 (1.21-3.1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.21-3.1_amd64.deb ... Unpacking fakeroot (1.21-3.1) ... Selecting previously unselected package sbuild-build-depends-core-dummy. Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... Setting up libfakeroot:amd64 (1.21-3.1) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up fakeroot (1.21-3.1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-14) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), libboost-dev, libmeryl-dev, libfilesys-df-perl Filtered Build-Depends: debhelper (>= 9), libboost-dev, libmeryl-dev, libfilesys-df-perl dpkg-deb: building package 'sbuild-build-depends-canu-dummy' in '/<>/resolver-IFYN1A/apt_archive/sbuild-build-depends-canu-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-canu-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-IFYN1A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IFYN1A/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-IFYN1A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IFYN1A/apt_archive ./ Sources [505 B] Get:5 copy:/<>/resolver-IFYN1A/apt_archive ./ Packages [591 B] Fetched 2059 B in 0s (0 B/s) Reading package lists... Reading package lists... Install canu build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: ca-certificates curl g++-6 krb5-locales libarchive-cpio-perl libcurl3 libglib2.0-data libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libltdl-dev libltdl7 libmail-sendmail-perl libnghttp2-14 libpsl5 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh2-1 libssl1.0.2 libssl1.1 libsys-hostname-long-perl openssl publicsuffix sgml-base shared-mime-info xdg-user-dirs xml-core Use 'apt autoremove' to remove them. The following additional packages will be installed: libboost-dev libboost1.62-dev libfilesys-df-perl libmeryl-dev Suggested packages: libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev The following NEW packages will be installed: libboost-dev libboost1.62-dev libfilesys-df-perl libmeryl-dev sbuild-build-depends-canu-dummy 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 7122 kB of archives. After this operation, 117 MB of additional disk space will be used. Get:1 copy:/<>/resolver-IFYN1A/apt_archive ./ sbuild-build-depends-canu-dummy 0.invalid.0 [814 B] Get:2 http://localhost:3142/debian unstable/main amd64 libboost1.62-dev amd64 1.62.0+dfsg-4+b1 [7053 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libboost-dev amd64 1.62.0.1 [3632 B] Get:4 http://localhost:3142/debian unstable/main amd64 libfilesys-df-perl amd64 0.92-6+b3 [12.5 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libmeryl-dev amd64 0~20150903+r2013-3 [51.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7122 kB in 0s (96.9 MB/s) Selecting previously unselected package libboost1.62-dev:amd64. (Reading database ... 18629 files and directories currently installed.) Preparing to unpack .../libboost1.62-dev_1.62.0+dfsg-4+b1_amd64.deb ... Unpacking libboost1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../libboost-dev_1.62.0.1_amd64.deb ... Unpacking libboost-dev:amd64 (1.62.0.1) ... Selecting previously unselected package libfilesys-df-perl. Preparing to unpack .../libfilesys-df-perl_0.92-6+b3_amd64.deb ... Unpacking libfilesys-df-perl (0.92-6+b3) ... Selecting previously unselected package libmeryl-dev. Preparing to unpack .../libmeryl-dev_0~20150903+r2013-3_amd64.deb ... Unpacking libmeryl-dev (0~20150903+r2013-3) ... Selecting previously unselected package sbuild-build-depends-canu-dummy. Preparing to unpack .../sbuild-build-depends-canu-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-canu-dummy (0.invalid.0) ... Setting up libmeryl-dev (0~20150903+r2013-3) ... Setting up libboost1.62-dev:amd64 (1.62.0+dfsg-4+b1) ... Setting up libfilesys-df-perl (0.92-6+b3) ... Processing triggers for man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-dev:amd64 (1.62.0.1) ... Setting up sbuild-build-depends-canu-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-3-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.29-4 dpkg-dev_1.18.24 g++-5_5.4.1-11 g++-6_6.4.0-3 g++-7_7.1.0-13 gcc-5_5.4.1-11 gcc-6_6.4.0-3 gcc-7_7.1.0-13 libc6-dev_2.24-14 libstdc++-5-dev_5.4.1-11 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.1.0-13 libstdc++6_7.1.0-13 linux-libc-dev_4.11.11-1+b1 Package versions: adduser_3.115 apt_1.5~beta1 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10 base-passwd_3.5.43 bash_4.4-5 binutils_2.29-4 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3 cpp_4:7.1.0-2 cpp-5_5.4.1-11 cpp-6_6.4.0-3 cpp-7_7.1.0-13 curl_7.52.1-5 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2+revertunsafeinc2 debian-archive-keyring_2017.5 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170729-2 g++_4:7.1.0-2 g++-5_5.4.1-11 g++-6_6.4.0-3 g++-7_7.1.0-13 gcc_4:7.1.0-2 gcc-4.9-base_4.9.3-14 gcc-5_5.4.1-11 gcc-5-base_5.4.1-11 gcc-6_6.4.0-3 gcc-6-base_6.4.0-3 gcc-7_7.1.0-13 gcc-7-base_7.1.0-13 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5+b1 hostname_3.18+b1 init-system-helpers_1.49 initscripts_2.88dsf-59.9 insserv_1.14.0-5.4+b1 intltool-debian_0.35.0+20060710.4 krb5-locales_1.15.1-2 libacl1_2.2.52-3+b1 libapt-pkg5.0_1.5~beta1 libarchive-cpio-perl_0.10-1 libarchive-zip-perl_1.59-1 libasan2_5.4.1-11 libasan3_6.4.0-3 libasan4_7.1.0-13 libassuan0_2.4.3-3 libatomic1_7.1.0-13 libattr1_1:2.4.47-2+b2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b2 libblkid1_2.29.2-2 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4+b1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3+b1 libcc1-0_7.1.0-13 libcilkrts5_7.1.0-13 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcurl3_7.52.1-5 libdb5.3_5.3.28-13 libdebconfclient0_0.229 libdpkg-perl_1.18.24 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libfilesys-df-perl_0.92-6+b3 libgcc-5-dev_5.4.1-11 libgcc-6-dev_6.4.0-3 libgcc-7-dev_7.1.0-13 libgcc1_1:7.1.0-13 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.4-3 libglib2.0-data_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-13 libgpg-error0_1.27-3 libgssapi-krb5-2_1.15.1-2 libhogweed4_3.3-1+b1 libicu57_57.1-6 libidn2-0_2.0.2-1 libisl15_0.18-1 libitm1_7.1.0-13 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblsan0_7.1.0-13 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2+b1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmail-sendmail-perl_0.79.16-2 libmeryl-dev_0~20150903+r2013-3 libmount1_2.29.2-2 libmpc3_1.0.3-1+b2 libmpfr4_3.1.5-1 libmpx0_5.4.1-11 libmpx2_7.1.0-13 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1+b1 libnghttp2-14_1.24.0-1 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.22_5.22.2-1 libperl5.26_5.26.0-5 libpipeline1_1.4.2-1 libpsl5_0.18.0-1 libquadmath0_7.1.0-13 libreadline6_6.3-9 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1+b1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libselinux1_2.6-3+b2 libsemanage-common_2.6-2 libsemanage1_2.6-2+b1 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2 libsqlite3-0_3.19.3-3 libss2_1.43.5-1 libssh2-1_1.8.0-1 libssl1.0.2_1.0.2l-2 libssl1.1_1.1.0f-4 libstdc++-5-dev_5.4.1-11 libstdc++-6-dev_6.4.0-3 libstdc++-7-dev_7.1.0-13 libstdc++6_7.1.0-13 libsys-hostname-long-perl_1.5-1 libsystemd0_234-2 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libtsan0_7.1.0-13 libubsan0_7.1.0-13 libudev1_234-2 libunistring2_0.9.7-2 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2 libxml2_2.9.4+dfsg1-3 linux-libc-dev_4.11.11-1+b1 login_1:4.4-4.1 lsb-base_9.20161125 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17+b3 mount_2.29.2-2 multiarch-support_2.24-14 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 openssl_1.1.0f-4 passwd_1:4.4-4.1 patch_2.7.5-1+b2 perl_5.26.0-5 perl-base_5.26.0-5 perl-modules-5.22_5.22.2-1 perl-modules-5.26_5.26.0-5 pinentry-curses_1.0.0-2 po-debconf_1.0.20 publicsuffix_20170809.0951-1 readline-common_7.0-3 sbuild-build-depends-canu-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 sgml-base_1.29 shared-mime-info_1.8-1 startpar_0.59-3.1 sysv-rc_2.88dsf-59.9 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 util-linux_2.29.2-2 xdg-user-dirs_0.15-2+b1 xml-core_0.17 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu May 18 05:59:52 2017 UTC gpgv: using RSA key 59B2306F3AF9DDC1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./canu_1.5+dfsg-1.dsc dpkg-source: info: extracting canu in /<>/canu-1.5+dfsg dpkg-source: info: unpacking canu_1.5+dfsg.orig.tar.gz dpkg-source: info: unpacking canu_1.5+dfsg-1.debian.tar.xz dpkg-source: info: applying external-deps.patch dpkg-source: info: applying relative-paths.patch dpkg-source: info: applying use-debian-mhap-at-runtime.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ /usr/share/debomatic/sbuildcommands/starting-build-commands/no-network canu_1.5+dfsg-1 experimental amd64 --------------------------------------------------------------------------------------------------------- I: Finished running '/usr/share/debomatic/sbuildcommands/starting-build-commands/no-network canu_1.5+dfsg-1 experimental amd64'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf HOME=/sbuild-nonexistent LANG=C LC_ALL=POSIX LC_CTYPE=C.UTF-8 LOGNAME=debomatic PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=experimental-amd64-debomatic SCHROOT_CHROOT_NAME=experimental-amd64-debomatic SCHROOT_COMMAND=env SCHROOT_GID=112 SCHROOT_GROUP=sbuild SCHROOT_SESSION_ID=experimental-amd64-debomatic-8b6051db-b7d0-4e8c-98aa-7531f2fcfaf8 SCHROOT_UID=1001 SCHROOT_USER=debomatic SHELL=/bin/sh USER=debomatic XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_ID=c1680106 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package canu dpkg-buildpackage: info: source version 1.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Afif Elghraoui dpkg-source -Zxz --before-build canu-1.5+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel --sourcedirectory=src/ dh_auto_clean -O--parallel -O--sourcedirectory=src/ make -j4 clean make[1]: Entering directory '/<>/canu-1.5+dfsg/src' Building for 'Linux' '4.9.0-3-amd64' as 'amd64' into '/<>/canu-1.5+dfsg/Linux-amd64/{bin,obj}' CC cc CXX g++ rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/libcanu.a /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_global.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_decodeRange.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_fasta.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_fileIO.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_reverseComplement.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_stackTrace.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_alloc.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitEncodings.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitPackedFile.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitPackedArray.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/dnaAlphabets.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/hexDump.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/md5.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/mt19937ar.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/readBuffer.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/speedCounter.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/sweatShop.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/timeAndSize.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/kMer.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/falcon_sense/libfalcon/falcon.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/gkStore.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/gkStoreEncode.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovOverlap.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStore.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreWriter.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreFilter.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreFile.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreHistogram.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgStore.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTig.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTigSizeAnalysis.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTigMultiAlignDisplay.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy-sinksource.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy-stubs-internal.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libmeryl.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/overlapReadCache.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapErrorAdjustment/analyzeAlignment.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/Display_Alignment.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/libedlib/edlib.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalign.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/Binomial_Bound.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-addRead.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-appendBases.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-baseCall.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-refine.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abColumn.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abMultiAlign.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/unitigConsensus.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libpbutgcns/Alignment.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDFalcon/dw.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/gfa/gfa.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-fasta.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-meryl.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-sequence.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-state.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-access.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-dump.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-file.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-mismatch.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-sort.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/atomic.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/backtrace.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/dwarf.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/elf.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/fileline.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/mmap.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/mmapio.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/posix.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/print.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/simple.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/sort.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/state.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/unknown.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/gatekeeperCreate /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperCreate/stores/gatekeeperCreate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/gatekeeperDumpFASTQ /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperDumpFASTQ/stores/gatekeeperDumpFASTQ.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/gatekeeperDumpMetaData /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperDumpMetaData/stores/gatekeeperDumpMetaData.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/gatekeeperPartition /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperPartition/stores/gatekeeperPartition.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreBuild /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreBuild/stores/ovStoreBuild.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreBucketizer /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreBucketizer/stores/ovStoreBucketizer.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreSorter /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreSorter/stores/ovStoreSorter.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreIndexer /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreIndexer/stores/ovStoreIndexer.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreDump /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreDump/stores/ovStoreDump.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/ovStoreStats /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreStats/stores/ovStoreStats.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgStoreCompress /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreCompress/stores/tgStoreCompress.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgStoreDump /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreDump/stores/tgStoreDump.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreDump/stores/tgTigSizeAnalysis.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgStoreLoad /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreLoad/stores/tgStoreLoad.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgStoreFilter /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreFilter/stores/tgStoreFilter.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgStoreCoverageStat /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreCoverageStat/stores/tgStoreCoverageStat.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/tgTigDisplay /<>/canu-1.5+dfsg/Linux-amd64/obj/tgTigDisplay/stores/tgTigDisplay.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/libleaff.a /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastaFile.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastaStdin.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastqFile.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastqStdin.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/gkStoreFile.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/merStream.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqCache.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqFactory.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqStore.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqStream.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/sffFile.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/leaff /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-blocks.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-duplicates.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-gc.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-partition.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-simulate.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-statistics.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/meryl /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-args.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-binaryOp.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-build.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-dump.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-estimate.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-merge.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-unaryOp.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/maskMers /<>/canu-1.5+dfsg/Linux-amd64/obj/maskMers/meryl/maskMers.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/simple /<>/canu-1.5+dfsg/Linux-amd64/obj/simple/meryl/simple.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/estimate-mer-threshold /<>/canu-1.5+dfsg/Linux-amd64/obj/estimate-mer-threshold/meryl/estimate-mer-threshold.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/existDB /<>/canu-1.5+dfsg/Linux-amd64/obj/existDB/meryl/existDB.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/positionDB /<>/canu-1.5+dfsg/Linux-amd64/obj/positionDB/meryl/positionDB.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/merTrim /<>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/overlapInCore /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Output.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Process_Overlaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/overlapInCorePartition /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCorePartition/overlapInCore/overlapInCorePartition.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/overlapConvert /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapConvert/overlapInCore/overlapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/overlapImport /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapImport/overlapInCore/overlapImport.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/overlapPair /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapPair/overlapInCore/overlapPair.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/prefixEditDistance-matchLimitGenerate /<>/canu-1.5+dfsg/Linux-amd64/obj/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/mhapConvert /<>/canu-1.5+dfsg/Linux-amd64/obj/mhapConvert/mhap/mhapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/mmapConvert /<>/canu-1.5+dfsg/Linux-amd64/obj/mmapConvert/minimap/mmapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/filterCorrectionOverlaps /<>/canu-1.5+dfsg/Linux-amd64/obj/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/generateCorrectionLayouts /<>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/correction/generateCorrectionLayouts.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/utgcns/stashContains.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/generateCorrectionLayouts/falcon_sense/outputFalcon.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/readConsensus /<>/canu-1.5+dfsg/Linux-amd64/obj/readConsensus/correction/readConsensus.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/errorEstimate /<>/canu-1.5+dfsg/Linux-amd64/obj/errorEstimate/correction/errorEstimate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/createFalconSenseInputs /<>/canu-1.5+dfsg/Linux-amd64/obj/createFalconSenseInputs/falcon_sense/createFalconSenseInputs.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/createFalconSenseInputs/falcon_sense/outputFalcon.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/falcon_sense /<>/canu-1.5+dfsg/Linux-amd64/obj/falcon_sense/falcon_sense/falcon_sense.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/trimReads /<>/canu-1.5+dfsg/Linux-amd64/obj/trimReads/overlapBasedTrimming/trimReads.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/trimReads/overlapBasedTrimming/trimReads-bestEdge.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/trimReads/overlapBasedTrimming/trimReads-largestCovered.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/trimReads/overlapBasedTrimming/trimReads-quality.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/splitReads /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/splitReads.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/splitReads-workUnit.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/splitReads-subReads.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/splitReads-trimBad.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/adjustNormal.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/splitReads/overlapBasedTrimming/adjustFlipped.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/findErrors /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Analyze_Alignment.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Output.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Process_Olap.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Read_Frags.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors/overlapErrorAdjustment/findErrors-Read_Olaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/findErrors-Dump /<>/canu-1.5+dfsg/Linux-amd64/obj/findErrors-Dump/overlapErrorAdjustment/findErrors-Dump.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/correctOverlaps /<>/canu-1.5+dfsg/Linux-amd64/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Correct_Frags.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Read_Olaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Redo_Olaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/bogart /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/bogart.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_AssemblyGraph.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_BestOverlapGraph.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_ChunkGraph.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_CreateUnitigs.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Instrumentation.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Logging.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_MarkRepeatReads.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_MergeOrphans.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Outputs.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_OverlapCache.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_PlaceContains.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_PlaceReadUsingOverlaps.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_PopulateUnitig.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_PromoteToSingleton.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_ReadInfo.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_SetParentAndHang.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_SplitDiscontinuous.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_TigGraph.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_TigVector.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Unitig.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Unitig_AddRead.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogart/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/bogus /<>/canu-1.5+dfsg/Linux-amd64/obj/bogus/bogus/bogus.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/bogus/bogus/bogusUtil.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/erateEstimate /<>/canu-1.5+dfsg/Linux-amd64/obj/erateEstimate/erateEstimate/erateEstimate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/utgcns /<>/canu-1.5+dfsg/Linux-amd64/obj/utgcns/utgcns/utgcns.[doP] /<>/canu-1.5+dfsg/Linux-amd64/obj/utgcns/utgcns/stashContains.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/alignGFA /<>/canu-1.5+dfsg/Linux-amd64/obj/alignGFA/gfa/alignGFA.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/fastqAnalyze /<>/canu-1.5+dfsg/Linux-amd64/obj/fastqAnalyze/fastq-utilities/fastqAnalyze.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/fastqSample /<>/canu-1.5+dfsg/Linux-amd64/obj/fastqSample/fastq-utilities/fastqSample.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/fastqSimulate /<>/canu-1.5+dfsg/Linux-amd64/obj/fastqSimulate/fastq-utilities/fastqSimulate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-amd64/bin/fastqSimulate-sort /<>/canu-1.5+dfsg/Linux-amd64/obj/fastqSimulate-sort/fastq-utilities/fastqSimulate-sort.[doP] make[1]: Leaving directory '/<>/canu-1.5+dfsg/src' dh_clean -O--parallel -O--sourcedirectory=src/ dpkg-source -Zxz -b canu-1.5+dfsg dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building canu using existing ./canu_1.5+dfsg.orig.tar.gz dpkg-source: info: building canu in canu_1.5+dfsg-1.debian.tar.xz dpkg-source: info: building canu in canu_1.5+dfsg-1.dsc debian/rules build dh build --parallel --sourcedirectory=src/ dh_update_autotools_config -O--parallel -O--sourcedirectory=src/ dh_auto_configure -O--parallel -O--sourcedirectory=src/ debian/rules override_dh_auto_build make[1]: Entering directory '/<>/canu-1.5+dfsg' dh_auto_build make -j4 make[2]: Entering directory '/<>/canu-1.5+dfsg/src' Building for 'Linux' '4.9.0-3-amd64' as 'amd64' into '/<>/canu-1.5+dfsg/Linux-amd64/{bin,obj}' CC cc CXX g++ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_decodeRange.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_decodeRange.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_fasta.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fasta.C Building snapshot v1.5 g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_reverseComplement.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_reverseComplement.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_fileIO.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fileIO.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_stackTrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_stackTrace.C AS_UTL/AS_UTL_fileIO.C: In function 'void AS_UTL_symlink(const char*, const char*)': AS_UTL/AS_UTL_fileIO.C:292:10: warning: ignoring return value of 'int symlink(const char*, const char*)', declared with attribute warn_unused_result [-Wunused-result] symlink(pathToFile, pathToLink); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_fileIO.C: In function 'off_t AS_UTL_sizeOfFile(const char*)': AS_UTL/AS_UTL_fileIO.C:392:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(cmd, FILENAME_MAX, F); // compressed uncompressed ratio uncompressed_name ~~~~~^~~~~~~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_fileIO.C:393:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(cmd, FILENAME_MAX, F); // 30264891 43640320 30.6% file ~~~~~^~~~~~~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_fileIO.C: In function 'void AS_UTL_loadFileList(char*, std::vector&)': AS_UTL/AS_UTL_fileIO.C:490:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, FILENAME_MAX, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_fileIO.C:496:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, FILENAME_MAX, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:77:2: warning: #warning LIBBACKTRACE [-Wcpp] #warning LIBBACKTRACE ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/AS_UTL_alloc.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_alloc.C AS_UTL/AS_UTL_stackTrace.C: In function 'void AS_UTL_catchCrash(int, siginfo_t*, void*)': AS_UTL/AS_UTL_stackTrace.C:59:30: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] #define WRITE_STRING(S) write(2, S, strlen(S)) ~~~~~^~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:99:3: note: in expansion of macro 'WRITE_STRING' WRITE_STRING("\nFailed with '"); ^~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:59:30: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] #define WRITE_STRING(S) write(2, S, strlen(S)) ~~~~~^~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:100:3: note: in expansion of macro 'WRITE_STRING' WRITE_STRING(strsignal(sig_num)); ^~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:59:30: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] #define WRITE_STRING(S) write(2, S, strlen(S)) ~~~~~^~~~~~~~~~~~~~~~~ AS_UTL/AS_UTL_stackTrace.C:101:3: note: in expansion of macro 'WRITE_STRING' WRITE_STRING("'; backtrace (libbacktrace):\n"); ^~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitEncodings.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitEncodings.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitPackedFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitPackedFile.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/bitPackedArray.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitPackedArray.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/dnaAlphabets.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/dnaAlphabets.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/hexDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/hexDump.C AS_UTL/bitPackedFile.C: In constructor 'bitPackedFile::bitPackedFile(const char*, uint64, bool)': AS_UTL/bitPackedFile.C:161:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(_file, t, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/bitPackedFile.C:162:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(_file, &at, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/bitPackedFile.C:163:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(_file, &bt, sizeof(uint64)); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AS_UTL/bitPackedFile.C: In member function 'void bitPackedFile::flushDirty()': AS_UTL/bitPackedFile.C:284:8: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(_file, _bfr, sizeof(uint64) * _bfrmax); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/md5.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/md5.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/mt19937ar.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/mt19937ar.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/readBuffer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/readBuffer.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/speedCounter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/speedCounter.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/sweatShop.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/sweatShop.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/timeAndSize.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/timeAndSize.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/kMer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/kMer.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/falcon_sense/libfalcon/falcon.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon falcon_sense/libfalcon/falcon.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/gkStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/gkStore.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/gkStoreEncode.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/gkStoreEncode.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovOverlap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovOverlap.C stores/gkStoreEncode.C: In member function 'uint32 gkRead::gkRead_encode2bit(uint8*&, char*, uint32)': stores/gkStoreEncode.C:67:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // The if here is redundant, but pretty. ^~ stores/gkStoreEncode.C:67:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // The if here is redundant, but pretty. ^~~~ stores/gkStoreEncode.C:68:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // Yes, everything shifts, not a mistake to leave out the braces. ^~ stores/gkStoreEncode.C:68:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // Yes, everything shifts, not a mistake to leave out the braces. ^~~~ stores/gkStoreEncode.C:69:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; ^~ stores/gkStoreEncode.C:69:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; ^~~~ stores/gkStore.C: In static member function 'static void gkStore::gkStore_clone(char*, char*)': stores/gkStore.C:1311:9: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(cPath, FILENAME_MAX); ~~~~~~^~~~~~~~~~~~~~~~~~~~~ stores/gkStore.C:1315:8: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir(clonePath); ~~~~~^~~~~~~~~~~ stores/gkStore.C:1329:8: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result [-Wunused-result] chdir(cPath); ~~~~~^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStore.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreWriter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreWriter.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreFilter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreFilter.C stores/gkStore.C: In constructor 'gkStore::gkStore(const char*, gkStore_mode, uint32)': stores/gkStore.C:592:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/blobs' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/reads' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/blobs' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/reads' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/blobs' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/reads' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/blobs' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/partitions/map' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/partitions/reads.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4124 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:592:1: warning: '/partitions/blobs.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore(char const *path, gkStore_mode mode, uint32 partID) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4124 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In constructor 'ovStore::ovStore(const char*, gkStore*)': stores/ovStore.C:59:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStore::ovStore(const char *path, gkStore *gkp) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C:59:1: warning: '/index' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStore::ovStore(const char *path, gkStore *gkp) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C:59:1: warning: '/evalues' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStore::ovStore(const char *path, gkStore *gkp) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In member function 'uint32 ovStore::readOverlap(ovOverlap*)': stores/ovStore.C:149:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStore::readOverlap(ovOverlap *overlap) { ^~~~~~~ stores/ovStore.C:149:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In member function 'uint32 ovStore::readOverlaps(ovOverlap*&, uint32&, bool)': stores/ovStore.C:205:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStore::readOverlaps(ovOverlap *&overlaps, uint32 &maxOverlaps, bool restrictToIID) { ^~~~~~~ stores/ovStore.C:205:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C: In destructor 'gkStore::~gkStore()': stores/gkStore.C:870:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::~gkStore() { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:870:1: warning: '/reads' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::~gkStore() { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:870:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::~gkStore() { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:870:1: warning: '/info.txt' directive output may be truncated writing 9 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::~gkStore() { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 10 and 4105 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In member function 'void ovStore::setRange(uint32, uint32)': stores/ovStore.C:381:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStore::setRange(uint32 firstIID, uint32 lastIID) { ^~~~~~~ stores/ovStore.C:381:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In member function 'void ovStore::resetRange()': stores/ovStore.C:429:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStore::resetRange(void) { ^~~~~~~ stores/ovStore.C:429:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In constructor 'ovStoreWriter::ovStoreWriter(const char*, gkStore*)': stores/ovStoreWriter.C:48:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::ovStoreWriter(const char *path, gkStore *gkp) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:48:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::ovStoreWriter(const char *path, gkStore *gkp) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:48:1: warning: '/index' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::ovStoreWriter(const char *path, gkStore *gkp) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C: In member function 'void gkStore::gkStore_buildPartitions(uint32*)': stores/gkStore.C:1145:1: warning: '/partitions' directive output may be truncated writing 11 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_buildPartitions(uint32 *partitionMap) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4107 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1145:1: warning: '/partitions/blobs.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_buildPartitions(uint32 *partitionMap) { ^~~~~~~ stores/gkStore.C:1145:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4125 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1145:1: warning: '/partitions/reads.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_buildPartitions(uint32 *partitionMap) { ^~~~~~~ stores/gkStore.C:1145:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4125 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1145:1: warning: '/partitions/map' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_buildPartitions(uint32 *partitionMap) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::writeOverlap(ovOverlap*)': stores/ovStoreWriter.C:164:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::writeOverlap(ovOverlap *overlap) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:164:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::writeOverlaps(ovOverlap*, uint64)': stores/ovStoreWriter.C:243:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::writeOverlaps(ovOverlap *ovls, ^~~~~~~~~~~~~ stores/ovStoreWriter.C:243:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:243:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::writeOverlaps(ovOverlap *ovls, ^~~~~~~~~~~~~ stores/ovStoreWriter.C:243:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4114 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:243:1: warning: '%04u' directive output may be truncated writing between 4 and 10 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::writeOverlaps(ovOverlap *ovls, ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4112 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStore.C: In member function 'void ovStore::addEvalues(std::vector&)': stores/ovStore.C:531:1: warning: '/evalues' directive output may be truncated writing 8 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStore::addEvalues(vector &fileList) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStore.C:55: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 9 and 4104 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C: In member function 'void gkStore::gkStore_deletePartitions()': stores/gkStore.C:1357:1: warning: '/partitions/map' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_deletePartitions(void) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1357:1: warning: '/partitions/reads.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_deletePartitions(void) { ^~~~~~~ stores/gkStore.C:1357:1: note: using the range [0, 4294967295] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4124 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1357:1: warning: '/partitions/blobs.' directive output may be truncated writing 18 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_deletePartitions(void) { ^~~~~~~ stores/gkStore.C:1357:1: note: using the range [0, 4294967295] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4124 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C: In member function 'void gkStore::gkStore_delete()': stores/gkStore.C:1335:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_delete(void) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1335:1: warning: '/libraries' directive output may be truncated writing 10 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_delete(void) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1335:1: warning: '/reads' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_delete(void) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gkStore.C:1335:1: warning: '/blobs' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] gkStore::gkStore_delete(void) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gkStore.H:33, from stores/gkStore.C:34: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'bool ovStoreWriter::testIndex(bool)': stores/ovStoreWriter.C:361:1: warning: '/index' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::testIndex(bool doFixes) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:361:1: warning: '/index.fixed' directive output may be truncated writing 12 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::testIndex(bool doFixes) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 13 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::mergeInfoFiles()': stores/ovStoreWriter.C:437:1: warning: '/index' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::mergeInfoFiles(void) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:437:1: warning: '%04u' directive output may be truncated writing between 4 and 10 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::mergeInfoFiles(void) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4112 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:437:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::mergeInfoFiles(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:437:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4114 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:437:1: warning: '/info' directive output may be truncated writing 5 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::mergeInfoFiles(void) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4101 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreFile.C stores/ovStoreWriter.C: In member function 'void ovStoreWriter::mergeHistogram()': stores/ovStoreWriter.C:578:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::mergeHistogram(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:578:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/ovStoreHistogram.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreHistogram.C stores/ovStoreWriter.C: In member function 'uint64 ovStoreWriter::loadBucketSizes(uint64*)': stores/ovStoreWriter.C:600:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::loadBucketSizes(uint64 *bucketSizes) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:600:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:600:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 22 and 4131 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:600:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::loadBucketSizes(uint64 *bucketSizes) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:600:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:600:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 25 and 4134 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:600:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::loadBucketSizes(uint64 *bucketSizes) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:600:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4125 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::loadOverlapsFromSlice(uint32, uint64, ovOverlap*, uint64&)': stores/ovStoreWriter.C:651:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::loadOverlapsFromSlice(uint32 slice, uint64 expectedLen, ovOverlap *ovls, uint64& ovlsLen) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:651:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:651:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 22 and 4131 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:651:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::loadOverlapsFromSlice(uint32 slice, uint64 expectedLen, ovOverlap *ovls, uint64& ovlsLen) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:651:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:651:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 25 and 4134 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgStore.C stores/ovStoreWriter.C: In member function 'void ovStoreWriter::removeOverlapSlice()': stores/ovStoreWriter.C:687:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::removeOverlapSlice(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:687:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:687:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 25 and 4134 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:687:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::removeOverlapSlice(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:687:1: note: using the range [-2147483648, 2147483647] for directive argument stores/ovStoreWriter.C:687:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 22 and 4131 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::checkSortingIsComplete()': stores/ovStoreWriter.C:699:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::checkSortingIsComplete(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:699:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:699:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::checkSortingIsComplete(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:699:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4113 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:699:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::checkSortingIsComplete(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:699:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4114 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C: In member function 'void ovStoreWriter::removeAllIntermediateFiles()': stores/ovStoreWriter.C:732:1: warning: '%04u' directive output may be truncated writing between 4 and 10 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4113 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:732:1: warning: '%04u' directive output may be truncated writing between 4 and 10 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 11 and 4112 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:732:1: warning: '%04d' directive output may be truncated writing between 4 and 11 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:732:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 6 and 4108 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:732:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:732:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4114 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:732:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:732:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 23 and 4125 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/ovStoreWriter.C:732:1: warning: '/bucket' directive output may be truncated writing 7 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] ovStoreWriter::removeAllIntermediateFiles(void) { ^~~~~~~~~~~~~ stores/ovStoreWriter.C:732:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/ovStore.H:37, from stores/ovStoreWriter.C:30: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 12 and 4114 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTig.C stores/tgStore.C: In member function 'void tgStore::purgeVersion(uint32)': stores/tgStore.C:189:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::purgeVersion(uint32 version) { ^~~~~~~ stores/tgStore.C:189:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C:189:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::purgeVersion(uint32 version) { ^~~~~~~ stores/tgStore.C:189:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C:189:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::purgeVersion(uint32 version) { ^~~~~~~ stores/tgStore.C:189:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C: In member function 'void tgStore::dumpMASR(tgStore::tgStoreEntry*&, uint32&, uint32)': stores/tgStore.C:594:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::dumpMASR(tgStoreEntry* &R, uint32& L, uint32 V) { ^~~~~~~ stores/tgStore.C:594:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C: In member function 'void tgStore::loadMASR(tgStore::tgStoreEntry*&, uint32&, uint32&, uint32)': stores/tgStore.C:622:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::loadMASR(tgStoreEntry* &R, uint32& L, uint32& M, uint32 V) { ^~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C:622:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::loadMASR(tgStoreEntry* &R, uint32& L, uint32& M, uint32 V) { ^~~~~~~ stores/tgStore.C:622:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/tgStore.C:622:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::loadMASR(tgStoreEntry* &R, uint32& L, uint32& M, uint32 V) { ^~~~~~~ stores/tgStore.C:622:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTigSizeAnalysis.C stores/tgStore.C: In member function 'FILE* tgStore::openDB(uint32)': stores/tgStore.C:696:1: warning: '/seqDB.v' directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] tgStore::openDB(uint32 version) { ^~~~~~~ stores/tgStore.C:696:1: note: using the range [-2147483648, 2147483647] for directive argument In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/tgStore.C:42: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4120 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/tgTigMultiAlignDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTigMultiAlignDisplay.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy-sinksource.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy-sinksource.cc stores/tgTig.C: In member function 'bool tgTig::loadLayout(FILE*)': stores/tgTig.C:538:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(LINE, LINEmax, F); LINEnum++; ~~~~~^~~~~~~~~~~~~~~~~~ stores/tgTig.C:661:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(LINE, LINEmax, F); LINEnum++; ~~~~~^~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy-stubs-internal.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy-stubs-internal.cc g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/stores/libsnappy/snappy.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy.cc g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libmeryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libmeryl.C meryl/libmeryl.C: In constructor 'merylStreamReader::merylStreamReader(const char*, uint32)': meryl/libmeryl.C:63:1: warning: '.mcidx' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamReader::merylStreamReader(const char *fn_, uint32 ms_) { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:63:1: warning: '.mcdat' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamReader::merylStreamReader(const char *fn_, uint32 ms_) { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:63:1: warning: '.mcpos' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamReader::merylStreamReader(const char *fn_, uint32 ms_) { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C: In constructor 'merylStreamWriter::merylStreamWriter(const char*, uint32, uint32, uint32, bool)': meryl/libmeryl.C:283:1: warning: '.mcidx.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::merylStreamWriter(const char *fn_, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:283:1: warning: '.mcdat.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::merylStreamWriter(const char *fn_, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:283:1: warning: '.mcpos.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::merylStreamWriter(const char *fn_, ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C: In destructor 'merylStreamWriter::~merylStreamWriter()': meryl/libmeryl.C:378:1: warning: '.mcidx.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:378:1: warning: '.mcidx' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:378:1: warning: '.mcdat.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:378:1: warning: '.mcdat' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:378:1: warning: '.mcpos.creating' directive output may be truncated writing 15 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 16 and 4111 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ meryl/libmeryl.C:378:1: warning: '.mcpos' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] merylStreamWriter::~merylStreamWriter() { ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from meryl/libmeryl.C:46: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 4102 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/overlapReadCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon overlapInCore/overlapReadCache.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapErrorAdjustment/analyzeAlignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon overlapErrorAdjustment/analyzeAlignment.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon overlapInCore/liboverlap/Binomial_Bound.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/overlapInCore/liboverlap/Display_Alignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDalign/Binomial_Bound.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDalign/NDalgorithm.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDalign/NDalgorithm-allocateMoreSpace.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDalign/NDalgorithm-extend.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 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/<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-appendBases.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-appendBases.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-applyAlignment.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-baseCall.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-baseCall.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-mergeRefine.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-refine.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-refine.C utgcns/libcns/abAbacus-refine.C:1326:2: warning: #warning SKIPPING ALL REFINEMENTS [-Wcpp] #warning SKIPPING ALL REFINEMENTS ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-refreshMultiAlign.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abAbacus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abColumn.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abColumn.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/abMultiAlign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abMultiAlign.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libcns/unitigConsensus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/unitigConsensus.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libpbutgcns/Alignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libpbutgcns/Alignment.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libpbutgcns/AlnGraphBoost.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/utgcns/libNDFalcon/dw.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDFalcon/dw.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/gfa/gfa.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon gfa/gfa.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-fasta.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-fasta.C meryl/libkmer/existDB-create-from-fasta.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:170:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:172:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:272:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-fasta.C:272:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-fasta.C:272:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-meryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-meryl.C meryl/libkmer/existDB-create-from-meryl.C:35:2: warning: #warning YUCK RELATIVE INCLUDE OF libmeryl.H [-Wcpp] #warning YUCK RELATIVE INCLUDE OF libmeryl.H ^~~~~~~ meryl/libkmer/existDB-create-from-meryl.C:58:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("F_U32") is different than merSize in meryl database ("F_U32").\n", ^ meryl/libkmer/existDB-create-from-meryl.C:58:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("F_U32") is different than merSize in meryl database ("F_U32").\n", ^ meryl/libkmer/existDB-create-from-meryl.C:85:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- tableSizeInEntries "F_U64"\n", tableSizeInEntries); ^ meryl/libkmer/existDB-create-from-meryl.C:86:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "F_U32"-"F_U32"\n", lo, hi); ^ meryl/libkmer/existDB-create-from-meryl.C:86:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "F_U32"-"F_U32"\n", lo, hi); ^ meryl/libkmer/existDB-create-from-meryl.C:135:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- numberOfMers "F_U64"\n", numberOfMers); ^ meryl/libkmer/existDB-create-from-meryl.C:147:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:147:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:147:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:166:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-meryl.C:167:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-meryl.C:169:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-create-from-sequence.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-sequence.C meryl/libkmer/existDB-create-from-sequence.C:158:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:159:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:261:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-sequence.C:261:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-sequence.C:261:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB-state.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-state.C meryl/libkmer/existDB-state.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "F_U32"\n", _merSizeInBases); ^ meryl/libkmer/existDB-state.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableBits "F_U32"\n", 2 * _merSizeInBases - _shift1); ^ meryl/libkmer/existDB-state.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "F_U64" ("F_U64" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ meryl/libkmer/existDB-state.C:200:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "F_U64" ("F_U64" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ meryl/libkmer/existDB-state.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "F_U64" ("F_U64" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ meryl/libkmer/existDB-state.C:201:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "F_U64" ("F_U64" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ meryl/libkmer/existDB-state.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "F_U64" ("F_U64" KB)\n", _countsWords, _countsWords >> 7); ^ meryl/libkmer/existDB-state.C:202:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "F_U64" ("F_U64" KB)\n", _countsWords, _countsWords >> 7); ^ meryl/libkmer/existDB-state.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift1: "F_U32"\n", _shift1); ^ meryl/libkmer/existDB-state.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift2 "F_U32"\n", _shift2); ^ meryl/libkmer/existDB-state.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask1 "F_X64"\n", _mask1); ^ meryl/libkmer/existDB-state.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask2 "F_X64"\n", _mask2); ^ meryl/libkmer/existDB-state.C:211:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hshWidth "F_U32"\n", _hshWidth); ^ meryl/libkmer/existDB-state.C:219:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_chkWidth "F_U32"\n", _chkWidth); ^ meryl/libkmer/existDB-state.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_cntWidth "F_U32"\n", _cntWidth); ^ meryl/libkmer/existDB-state.C: In member function 'bool existDB::loadState(const char*, bool, bool)': meryl/libkmer/existDB-state.C:108:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(cigam, sizeof(char), 16, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:152:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_merSizeInBases, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:153:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_shift1, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:154:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_shift2, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:155:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_mask1, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:156:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_mask2, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:157:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_hshWidth, sizeof(uint32), 1, F); // only valid if _compressedHash ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:158:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_chkWidth, sizeof(uint32), 1, F); // only valid if _compressedBucket ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:159:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_cntWidth, sizeof(uint32), 1, F); // only valid if _compressedCounts ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:161:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_hashTableWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:162:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_bucketsWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:163:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_countsWords, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:176:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_hashTable, sizeof(uint64), _hashTableWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:177:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_buckets, sizeof(uint64), _bucketsWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/existDB-state.C:180:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_counts, sizeof(uint64), _countsWords, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/existDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB.C meryl/libkmer/existDB.C:73:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "F_U32", expected "F_U32"\n", _merSizeInBases, merSize); ^ meryl/libkmer/existDB.C:73:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "F_U32", expected "F_U32"\n", _merSizeInBases, merSize); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-access.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-access.C In file included from meryl/libkmer/positionDB-access.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-access.C:54:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "F_U64" uint64's.\n", posnMax); ^ meryl/libkmer/positionDB-access.C:247:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "F_U64" and more than "F_U64"\n", lo, hi); ^ meryl/libkmer/positionDB-access.C:247:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "F_U64" and more than "F_U64"\n", lo, hi); ^ meryl/libkmer/positionDB-access.C:371:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers less than "F_U64"\n", loCount, lo); ^ meryl/libkmer/positionDB-access.C:371:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers less than "F_U64"\n", loCount, lo); ^ meryl/libkmer/positionDB-access.C:372:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers more than "F_U64"\n", hiCount, hi); ^ meryl/libkmer/positionDB-access.C:372:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers more than "F_U64"\n", hiCount, hi); ^ meryl/libkmer/positionDB-access.C:373:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Saved "F_U64" kmers with acceptable count\n", okCount); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-dump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-dump.C In file included from meryl/libkmer/positionDB-dump.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-dump.C:54:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:54:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:61:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:61:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:61:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:69:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, " "F_U64, getDecodedValue(_positions, pos, _posnWidth)); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-file.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-file.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-mismatch.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-mismatch.C In file included from meryl/libkmer/positionDB-file.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-file.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeWrite()-- Wanted to write "F_S64" bytes, wrote "F_S64".\n", (int64)towrite, (int64)written); ^ meryl/libkmer/positionDB-file.C:68:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeWrite()-- Wanted to write "F_S64" bytes, wrote "F_S64".\n", (int64)towrite, (int64)written); ^ meryl/libkmer/positionDB-file.C:100:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeRead()-- Wanted to read "F_S64" bytes, read "F_S64".\n", (int64)toread, (int64)written); ^ meryl/libkmer/positionDB-file.C:100:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeRead()-- Wanted to read "F_S64" bytes, read "F_S64".\n", (int64)toread, (int64)written); ^ meryl/libkmer/positionDB-file.C:304:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "F_U32"\n", _merSizeInBases); ^ meryl/libkmer/positionDB-file.C:305:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSkipInBases: "F_U32"\n", _merSkipInBases); ^ meryl/libkmer/positionDB-file.C:306:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInBits: "F_U32"\n", _tableSizeInBits); ^ meryl/libkmer/positionDB-file.C:307:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInEntries: "F_U64"\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB-file.C:308:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "hashWidth: "F_U32"\n", _hashWidth); ^ meryl/libkmer/positionDB-file.C:309:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "chckWidth: "F_U32"\n", _chckWidth); ^ meryl/libkmer/positionDB-file.C:310:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "posnWidth: "F_U32"\n", _posnWidth); ^ meryl/libkmer/positionDB-file.C:311:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfMers: "F_U64"\n", _numberOfMers); ^ meryl/libkmer/positionDB-file.C:312:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfPositions: "F_U64"\n", _numberOfPositions); ^ meryl/libkmer/positionDB-file.C:313:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfDistinct: "F_U64"\n", _numberOfDistinct); ^ meryl/libkmer/positionDB-file.C:314:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfUnique: "F_U64"\n", _numberOfUnique); ^ meryl/libkmer/positionDB-file.C:315:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfEntries: "F_U64"\n", _numberOfEntries); ^ meryl/libkmer/positionDB-file.C:316:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "maximumEntries: "F_U64"\n", _maximumEntries); ^ In file included from meryl/libkmer/positionDB-mismatch.C:26:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-mismatch.C:348:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "F_U64" uint64's.\n", posnMax); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB-sort.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-sort.C In file included from meryl/libkmer/positionDB-sort.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-sort.C:69:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:69:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:69:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:110:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:110:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:118:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:118:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:118:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:142:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-file.C: In member function 'void positionDB::saveState(const char*)': meryl/libkmer/positionDB-file.C:144:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/positionDB-file.C:146:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(F, faild, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libkmer/positionDB-file.C:202:10: warning: ignoring return value of 'ssize_t write(int, const void*, size_t)', declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/meryl/libkmer/positionDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB.C In file included from meryl/libkmer/positionDB.C:38:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB.C:107:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:107:103: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:113:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:113:103: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:119:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:119:119: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:188:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " sm = "F_U64"\n", sm); ^ meryl/libkmer/positionDB.C:189:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " lg = "F_U64"\n", lg); ^ meryl/libkmer/positionDB.C:190:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " merSize = "F_U32" bits\n", 2 * merSize); ^ meryl/libkmer/positionDB.C:191:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " approxMers = "F_U64" mers\n", approxMers); ^ meryl/libkmer/positionDB.C:192:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " posnWidth = "F_U64" bits\n", posnWidth); ^ meryl/libkmer/positionDB.C:203:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:203:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:203:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:278:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:387:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- bktAlloc = new uint64 ["F_U64"]\n", _tableSizeInEntries / 2 + 4); ^ meryl/libkmer/positionDB.C:409:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated bucket size counting space with total size "F_U64" KB\n", _tableSizeInEntries >> 8); ^ meryl/libkmer/positionDB.C:453:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "F_U64" mers (max position = "F_U64")\n", _numberOfMers, _numberOfPositions); ^ meryl/libkmer/positionDB.C:453:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "F_U64" mers (max position = "F_U64")\n", _numberOfMers, _numberOfPositions); ^ meryl/libkmer/positionDB.C:491:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ meryl/libkmer/positionDB.C:491:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ meryl/libkmer/positionDB.C:496:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _countingBuckets = new uint64 ["F_U64"]\n", bucketsSpace); ^ meryl/libkmer/positionDB.C:614:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Sorting and repacking buckets ("F_U64" buckets).\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB.C:629:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:629:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:698:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for hash table ("F_U64" 64-bit words)\n", hs >> 7, hs); ^ meryl/libkmer/positionDB.C:698:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for hash table ("F_U64" 64-bit words)\n", hs >> 7, hs); ^ meryl/libkmer/positionDB.C:704:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _hashTable_BP = new uint64 ["F_U64"]\n", hs); ^ meryl/libkmer/positionDB.C:723:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "F_U64" Need: "F_U64" (64-bit words)\n", bucketsSpace, bs); ^ meryl/libkmer/positionDB.C:723:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "F_U64" Need: "F_U64" (64-bit words)\n", bucketsSpace, bs); ^ meryl/libkmer/positionDB.C:730:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bs >> 7, bs); ^ meryl/libkmer/positionDB.C:730:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bs >> 7, bs); ^ meryl/libkmer/positionDB.C:735:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _buckets = new uint64 ["F_U64"]\n", bs); ^ meryl/libkmer/positionDB.C:741:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for positions ("F_U64" 64-bit words)\n", ps >> 7, ps); ^ meryl/libkmer/positionDB.C:741:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for positions ("F_U64" 64-bit words)\n", ps >> 7, ps); ^ meryl/libkmer/positionDB.C:746:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _positions = new uint64 ["F_U64"\n", ps); ^ meryl/libkmer/positionDB.C:756:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Transferring to final structure ("F_U64" buckets).\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB.C:939:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "F_U64", but only "F_U64" available!\n", ^ meryl/libkmer/positionDB.C:939:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "F_U64", but only "F_U64" available!\n", ^ meryl/libkmer/positionDB.C:994:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:994:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:1016:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "F_U32" bits wide to "F_U32" bits wide.\n", ^ meryl/libkmer/positionDB.C:1016:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "F_U32" bits wide to "F_U32" bits wide.\n", ^ meryl/libkmer/positionDB.C:1051:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loading "F_U64" mercounts.\n", counts->numberOfDistinctMers()); ^ meryl/libkmer/positionDB.C:1074:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "F_U64" mercounts; largest is "F_U64".\n", countsLoaded, largestMerylCount); ^ meryl/libkmer/positionDB.C:1074:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "F_U64" mercounts; largest is "F_U64".\n", countsLoaded, largestMerylCount); ^ meryl/libkmer/positionDB.C:1078:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "F_U32" bits to "F_U32" bits.\n", ^ meryl/libkmer/positionDB.C:1078:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "F_U32" bits to "F_U32" bits.\n", ^ cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/atomic.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/atomic.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/backtrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/backtrace.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/dwarf.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/dwarf.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/elf.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/elf.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/fileline.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/fileline.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/mmap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/mmap.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/mmapio.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/mmapio.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/posix.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/posix.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/print.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/print.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/simple.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/simple.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/sort.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/sort.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/state.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/state.c cc -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libcanu.a/AS_UTL/libbacktrace/unknown.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/unknown.c g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperCreate/stores/gatekeeperCreate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperCreate.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperDumpFASTQ/stores/gatekeeperDumpFASTQ.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -Istores -IAS_UTL -IoverlapBasedTrimming stores/gatekeeperDumpFASTQ.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperDumpMetaData/stores/gatekeeperDumpMetaData.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperDumpMetaData.C stores/gatekeeperDumpFASTQ.C: In function 'int main(int, char**)': stores/gatekeeperDumpFASTQ.C:402:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (dumpFASTA) // Dear GCC: I'm NOT ambiguous ^ stores/gatekeeperDumpFASTQ.C:412:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (dumpFASTQ) // Dear GCC: I'm NOT ambiguous ^ stores/gatekeeperCreate.C: In function 'uint32 loadFASTA(char*, char*, char*, uint32&, char*, compressedFileReader*, FILE*, uint32&)': stores/gatekeeperCreate.C:96:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); nLines++; ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:148:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); nLines++; ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C: In function 'uint32 loadFASTQ(char*, char*, char*, uint32&, char*, compressedFileReader*, FILE*, uint32&)': stores/gatekeeperCreate.C:206:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(S, AS_MAX_READLEN+1, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:219:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(overflow, 1048576, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:272:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(Q, AS_MAX_READLEN+1, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:273:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(Q, AS_MAX_READLEN+1, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:285:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(overflow, 1048576, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C: In function 'void loadReads(gkStore*, gkLibrary*, uint32, uint32, FILE*, FILE*, FILE*, char*, uint32&, uint32&, uint64&, uint32&, uint64&)': stores/gatekeeperCreate.C:391:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperCreate.C:462:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); lineNumber++; ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stores/gatekeeperDumpFASTQ.C: In member function 'FILE* libOutput::openFASTQ()': stores/gatekeeperDumpFASTQ.C:82:10: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] FILE *openFASTQ(void) { ^~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gatekeeperDumpFASTQ.C:38: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 8 and 12293 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gatekeeperDumpFASTQ.C:82:10: warning: '.fastq' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] FILE *openFASTQ(void) { ^~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gatekeeperDumpFASTQ.C:38: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 8197 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gatekeeperDumpFASTQ.C: In member function 'FILE* libOutput::openFASTA()': stores/gatekeeperDumpFASTQ.C:112:10: warning: '%s' directive output may be truncated writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] FILE *openFASTA(void) { ^~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gatekeeperDumpFASTQ.C:38: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 8 and 12293 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ stores/gatekeeperDumpFASTQ.C:112:10: warning: '.fasta' directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] FILE *openFASTA(void) { ^~~~~~~~~ In file included from /usr/include/stdio.h:938:0, from /<>/canu-1.5+dfsg/src/AS_global.H:75, from stores/gatekeeperDumpFASTQ.C:38: /usr/include/x86_64-linux-gnu/bits/stdio2.h:65:44: note: '__builtin___snprintf_chk' output between 7 and 8197 bytes into a destination of size 4096 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/gatekeeperPartition/stores/gatekeeperPartition.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperPartition.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreBuild/stores/ovStoreBuild.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreBuild.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreBucketizer/stores/ovStoreBucketizer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreBucketizer.C stores/ovStoreBuild.C:525:2: warning: #warning not checking overlap IDs for validity [-Wcpp] #warning not checking overlap IDs for validity ^~~~~~~ stores/ovStoreBucketizer.C:270:2: warning: #warning not reporting fate [-Wcpp] #warning not reporting fate ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreSorter/stores/ovStoreSorter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreSorter.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreIndexer/stores/ovStoreIndexer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreIndexer.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreDump/stores/ovStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreDump.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/ovStoreStats/stores/ovStoreStats.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreStats.C stores/ovStoreDump.C: In constructor 'bogartStatus::bogartStatus(const char*, uint32)': stores/ovStoreDump.C:148:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, E); ~~~~~^~~~~~~~~~~~~~~~~~~~ stores/ovStoreDump.C:164:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, E); ~~~~~^~~~~~~~~~~~~~~~~~~~ stores/ovStoreDump.C:169:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, S); ~~~~~^~~~~~~~~~~~~~~~~~~~ stores/ovStoreDump.C:185:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, S); ~~~~~^~~~~~~~~~~~~~~~~~~~ stores/ovStoreDump.C:190:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, G); ~~~~~^~~~~~~~~~~~~~~~~~~~ stores/ovStoreDump.C:206:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, G); ~~~~~^~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreCompress/stores/tgStoreCompress.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreCompress.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreDump/stores/tgStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreDump.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreDump/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgTigSizeAnalysis.C stores/tgStoreDump.C:696:2: warning: #warning replace this with genericStatistics [-Wcpp] #warning replace this with genericStatistics ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreLoad/stores/tgStoreLoad.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreLoad.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreFilter/stores/tgStoreFilter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreFilter.C stores/tgStoreFilter.C:541:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ stores/tgStoreFilter.C:547:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ stores/tgStoreFilter.C:553:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgStoreCoverageStat/stores/tgStoreCoverageStat.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreCoverageStat.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/tgTigDisplay/stores/tgTigDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgTigDisplay.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastaFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastaFile.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastaStdin.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastaStdin.C meryl/libleaff/fastaFile.C: In member function 'void fastaFile::loadIndex(char*)': meryl/libleaff/fastaFile.C:381:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastaFileHeader), 1, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/fastaFile.C:403:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/fastaFile.C:404:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastqFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastqFile.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/fastqStdin.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastqStdin.C meryl/libleaff/fastqFile.C: In member function 'void fastqFile::loadIndex(char*)': meryl/libleaff/fastqFile.C:378:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastqFileHeader), 1, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/fastqFile.C:398:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/fastqFile.C:399:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/gkStoreFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/gkStoreFile.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/merStream.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/merStream.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqCache.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqFactory.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqFactory.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqStore.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/seqStream.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqStream.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/libleaff.a/meryl/libleaff/sffFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/sffFile.C meryl/libleaff/seqStore.C: In constructor 'seqStore::seqStore(const char*)': meryl/libleaff/seqStore.C:50:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C: In member function 'virtual seqFile* seqStore::openFile(const char*)': meryl/libleaff/seqStore.C:102:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&magic1, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C:103:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&magic2, sizeof(uint64), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C: In member function 'void seqStore::loadIndex()': meryl/libleaff/seqStore.C:347:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C:358:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C:372:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/libleaff/seqStore.C:376:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread( _names, sizeof(char), _header._namesLength, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-blocks.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-blocks.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-duplicates.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-duplicates.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-gc.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-gc.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-partition.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-partition.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-simulate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-simulate.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff-statistics.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-statistics.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/leaff/meryl/leaff.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-args.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-args.C meryl/meryl-args.C: In function 'char* readString(FILE*)': meryl/meryl-args.C:79:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&len, sizeof(uint32), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/meryl-args.C:89:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(str, sizeof(char), len, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/meryl-args.C: In constructor 'merylArgs::merylArgs(const char*)': meryl/meryl-args.C:557:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(magic, sizeof(char), 16, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/meryl-args.C:565:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(this, sizeof(merylArgs), 1, F); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-binaryOp.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-binaryOp.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-build.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-build.C meryl/meryl-build.C:281:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] #warning not submitting prepareBatch to grid ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-dump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-dump.C meryl/meryl-dump.C:95:2: warning: #warning make this a test [-Wcpp] #warning make this a test ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-estimate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-estimate.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-merge.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-merge.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl-unaryOp.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-unaryOp.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/meryl/meryl/meryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/maskMers/meryl/maskMers.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/maskMers.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/simple/meryl/simple.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/simple.C g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/estimate-mer-threshold/meryl/estimate-mer-threshold.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/estimate-mer-threshold.C meryl/estimate-mer-threshold.C: In function 'void loadHistogram(FILE*, uint64&, uint64&, uint64&, uint32&, uint32*&)': meryl/estimate-mer-threshold.C:113:8: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, HF); ~~~~~^~~~~~~~~~~~~ meryl/estimate-mer-threshold.C:128:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, HF); ~~~~~^~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/existDB/meryl/existDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff -Imeryl/libkmer meryl/existDB.C meryl/maskMers.C: In member function 'void merMaskedSequence::loadMasking(uint32)': meryl/maskMers.C:159:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_numSeq, sizeof(uint32), 1, maskMersFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/maskMers.C:160:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_merSize, sizeof(uint32), 1, maskMersFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/maskMers.C:168:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread( _seqLen, sizeof(uint32), _numSeq, maskMersFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/maskMers.C:183:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_masking[i], sizeof(char), _seqLen[i], maskMersFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/maskMers.C:184:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(_repeatID[i], sizeof(uint32), _seqLen[i], maskMersFile); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ meryl/existDB.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); ^ meryl/existDB.C:81:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" count differs : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ meryl/existDB.C:90:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ meryl/existDB.C:121:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "F_U64", didn't find "F_U64" merStream mers in the existDB.\n", tried, lost); ^ meryl/existDB.C:121:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "F_U64", didn't find "F_U64" merStream mers in the existDB.\n", tried, lost); ^ meryl/existDB.C:153:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "F_U64" mers in the meryl database.\n", expected); ^ meryl/existDB.C:173:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "F_U64" mers, but found "F_U64" instead.\n", ^ meryl/existDB.C:173:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "F_U64" mers, but found "F_U64" instead.\n", ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/positionDB/meryl/positionDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff -Imeryl/libkmer meryl/positionDB.C In file included from meryl/positionDB.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/positionDB.C:75:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found no matches for mer=%s at pos="F_U64"\n", ^ meryl/positionDB.C:122:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:122:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:122:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:276:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="F_U64" and merend="F_U64" are incompatible.\n", ^ meryl/positionDB.C:276:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="F_U64" and merend="F_U64" are incompatible.\n", ^ meryl/positionDB.C:296:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "F_U32", merSkip "F_U32"\n", mersize, merskip); ^ meryl/positionDB.C:296:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "F_U32", merSkip "F_U32"\n", mersize, merskip); ^ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Imeryl -Imeryl/libleaff -Imeryl/libkmer merTrim/merTrim.C In file included from merTrim/merTrim.C:52:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ merTrim/merTrim.C:471:2: warning: #warning HORRIBLY NON OPTIMAL READING OF READS [-Wcpp] #warning HORRIBLY NON OPTIMAL READING OF READS ^~~~~~~ merTrim/merTrim.C:586:2: warning: #warning ASSUMING SANGER QV ENCODING [-Wcpp] #warning ASSUMING SANGER QV ENCODING ^~~~~~~ merTrim/merTrim.C:649:2: warning: #warning BOGUS ERROR RATE USED [-Wcpp] #warning BOGUS ERROR RATE USED ^~~~~~~ merTrim/merTrim.C:2006:2: warning: #warning BOGUS MIN_READ_LENGTH USED [-Wcpp] #warning BOGUS MIN_READ_LENGTH USED ^~~~~~~ merTrim/merTrim.C:2037:2: warning: #warning BOGUS MIN_READ_LENGTH USED [-Wcpp] #warning BOGUS MIN_READ_LENGTH USED ^~~~~~~ merTrim/merTrim.C:2170:2: warning: #warning unfinished verify [-Wcpp] #warning unfinished verify ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore.C merTrim/merTrim.C: In member function 'bool mertrimComputation::initializeFASTQ(mertrimGlobalData*)': merTrim/merTrim.C:557:37: warning: 'memset' used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset(verifyName, 1024, 0); ^ merTrim/merTrim.C:558:37: warning: 'memset' used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset(verifySeq, allocLen, 0); // Needed, for verified reads shorter than real reads ^ merTrim/merTrim.C: In member function 'void mertrimComputation::dump(char*)': merTrim/merTrim.C:1785:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1795:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1816:28: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1826:28: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1837:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1847:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1857:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1867:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1877:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C: In member function 'bool mertrimComputation::initializeFASTQ(mertrimGlobalData*)': merTrim/merTrim.C:561:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(verifyName, 1024, g->fqVerify->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:562:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(verifySeq, allocLen, g->fqVerify->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:563:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqVerify->file()); // qv name line, ignored ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:564:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqVerify->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:572:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(readName, 1024, g->fqInput->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:573:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(origSeq, allocLen, g->fqInput->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:574:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqInput->file()); // qv name line, ignored ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ merTrim/merTrim.C:575:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqInput->file()); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Build_Hash_Index.C cc1plus: some warnings being treated as errors g++ -o /<>/canu-1.5+dfsg/Linux-amd64/obj/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Find_Overlaps.C Makefile:640: recipe for target '/<>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.o' failed make[2]: *** [/<>/canu-1.5+dfsg/Linux-amd64/obj/merTrim/merTrim/merTrim.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/<>/canu-1.5+dfsg/src' dh_auto_build: make -j4 returned exit code 2 debian/rules:14: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/canu-1.5+dfsg' debian/rules:11: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-13T01:54:42Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: full Build-Space: 78292 Build-Time: 25 Distribution: experimental Fail-Stage: build Host Architecture: amd64 Install-Time: 4 Job: /srv/debomatic/incoming/canu_1.5+dfsg-1.dsc Machine Architecture: amd64 Package: canu Package-Time: 46 Source-Version: 1.5+dfsg-1 Space: 78292 Status: attempted Version: 1.5+dfsg-1 -------------------------------------------------------------------------------- Finished at 2017-08-13T01:54:42Z Build needed 00:00:46, 78292k disk space